2023-09-12T18:16:26,946 Created temporary directory: /tmp/pip-build-tracker-l8liojdu 2023-09-12T18:16:26,947 Initialized build tracking at /tmp/pip-build-tracker-l8liojdu 2023-09-12T18:16:26,947 Created build tracker: /tmp/pip-build-tracker-l8liojdu 2023-09-12T18:16:26,948 Entered build tracker: /tmp/pip-build-tracker-l8liojdu 2023-09-12T18:16:26,948 Created temporary directory: /tmp/pip-wheel-rva1bdgc 2023-09-12T18:16:26,952 Created temporary directory: /tmp/pip-ephem-wheel-cache-_41eemqg 2023-09-12T18:16:26,973 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-12T18:16:26,977 2 location(s) to search for versions of molnet-python: 2023-09-12T18:16:26,977 * https://pypi.org/simple/molnet-python/ 2023-09-12T18:16:26,977 * https://www.piwheels.org/simple/molnet-python/ 2023-09-12T18:16:26,978 Fetching project page and analyzing links: https://pypi.org/simple/molnet-python/ 2023-09-12T18:16:26,978 Getting page https://pypi.org/simple/molnet-python/ 2023-09-12T18:16:26,980 Found index url https://pypi.org/simple/ 2023-09-12T18:16:27,125 Fetched page https://pypi.org/simple/molnet-python/ as application/vnd.pypi.simple.v1+json 2023-09-12T18:16:27,128 Found link https://files.pythonhosted.org/packages/5d/08/98de9fa9e6ff84b42f171d64cb6779657f7dfbf5601013ab4d8b10bf0182/molnet-python-0.0.1.tar.gz (from https://pypi.org/simple/molnet-python/) (requires-python:>=3.6), version: 0.0.1 2023-09-12T18:16:27,129 Skipping link: No binaries permitted for molnet-python: https://files.pythonhosted.org/packages/c8/ab/fe6b07bfe7378c46b221bd1ef6cb0f9044126dba10c2e7a8947105a865f2/molnet_python-0.0.1-py3-none-any.whl (from https://pypi.org/simple/molnet-python/) (requires-python:>=3.6) 2023-09-12T18:16:27,130 Found link https://files.pythonhosted.org/packages/cd/96/b8b24082c5cf5c19367793d0aa374472f5b27412009e9bd483a1ace4f4cb/molnet-python-0.0.2.tar.gz (from https://pypi.org/simple/molnet-python/) (requires-python:>=3.6), version: 0.0.2 2023-09-12T18:16:27,131 Found link https://files.pythonhosted.org/packages/68/68/719d53854c6c658c5a03f57a04ca9d4248f440de5b1691d4350a299d58ba/molnet-python-0.0.3.tar.gz (from https://pypi.org/simple/molnet-python/) (requires-python:>=3.6), version: 0.0.3 2023-09-12T18:16:27,132 Found link https://files.pythonhosted.org/packages/4a/ac/7850baa965ca31f485e20a4fc20c6f83ac2b16c7f2491065a2eaa0957384/molnet-python-0.0.4.tar.gz (from https://pypi.org/simple/molnet-python/) (requires-python:>=3.6), version: 0.0.4 2023-09-12T18:16:27,133 Found link https://files.pythonhosted.org/packages/7a/b1/681a25b343b09c0a3b81a87009cc5249db5c97f12390cf841cdf86ef980a/molnet-python-0.0.5.tar.gz (from https://pypi.org/simple/molnet-python/) (requires-python:>=3.6), version: 0.0.5 2023-09-12T18:16:27,134 Found link https://files.pythonhosted.org/packages/f7/ba/a3735f84083dfe20a9264d6dcb8fa0010e8569f1fe9f4e9c5a2acfb22dcd/molnet-python-0.0.6.tar.gz (from https://pypi.org/simple/molnet-python/) (requires-python:>=3.6), version: 0.0.6 2023-09-12T18:16:27,136 Found link https://files.pythonhosted.org/packages/b4/68/10630f3d68007590a4ff0545559fabcde007ca5fbf02f1346d2c4d3608da/molnet-python-0.0.7.tar.gz (from https://pypi.org/simple/molnet-python/) (requires-python:>=3.6), version: 0.0.7 2023-09-12T18:16:27,137 Found link https://files.pythonhosted.org/packages/7b/d0/bef9b32d0a8f95a0e493ec9c3e2e70e6d1643ddb160c8d000c663e6001e1/molnet-python-0.0.8.tar.gz (from https://pypi.org/simple/molnet-python/) (requires-python:>=3.6), version: 0.0.8 2023-09-12T18:16:27,138 Found link https://files.pythonhosted.org/packages/7f/85/940dd7f8fa57754cd8198e3a7e2c53be53d222de2258e0776546c7128dd8/molnet-python-0.0.9.tar.gz (from https://pypi.org/simple/molnet-python/) (requires-python:>=3.6), version: 0.0.9 2023-09-12T18:16:27,138 Fetching project page and analyzing links: https://www.piwheels.org/simple/molnet-python/ 2023-09-12T18:16:27,139 Getting page https://www.piwheels.org/simple/molnet-python/ 2023-09-12T18:16:27,141 Found index url https://www.piwheels.org/simple/ 2023-09-12T18:16:27,427 Fetched page https://www.piwheels.org/simple/molnet-python/ as text/html 2023-09-12T18:16:27,429 Skipping link: No binaries permitted for molnet-python: https://www.piwheels.org/simple/molnet-python/molnet_python-0.0.1-py3-none-any.whl#sha256=2f6b15d5d7035dcdd4eb7a1ba6aa480ea2b97a265e1589b5cc03f22ef85e5b30 (from https://www.piwheels.org/simple/molnet-python/) (requires-python:>=3.6) 2023-09-12T18:16:27,430 Skipping link: No binaries permitted for molnet-python: https://www.piwheels.org/simple/molnet-python/molnet_python-0.0.2-py3-none-any.whl#sha256=3534765c8a825605c134dbe65b47759dd6fc9eb8f02a73e7b06cb9e3c186e9c3 (from https://www.piwheels.org/simple/molnet-python/) (requires-python:>=3.6) 2023-09-12T18:16:27,431 Skipping link: No binaries permitted for molnet-python: https://www.piwheels.org/simple/molnet-python/molnet_python-0.0.3-py3-none-any.whl#sha256=c000b7a2a668a041541f0d1c1494025731f2e17df6f8450fc4e2d10fcc02bc95 (from https://www.piwheels.org/simple/molnet-python/) (requires-python:>=3.6) 2023-09-12T18:16:27,431 Skipping link: No binaries permitted for molnet-python: https://www.piwheels.org/simple/molnet-python/molnet_python-0.0.4-py3-none-any.whl#sha256=843c51ddfdc17d4958468d77a795344e357083af17da3065ae994d16cd1cba26 (from https://www.piwheels.org/simple/molnet-python/) (requires-python:>=3.6) 2023-09-12T18:16:27,432 Skipping link: No binaries permitted for molnet-python: https://www.piwheels.org/simple/molnet-python/molnet_python-0.0.5-py3-none-any.whl#sha256=3d16e1fc479989fd12ac16e3747c153c9cd3c0063e2145074a11c87f256631f6 (from https://www.piwheels.org/simple/molnet-python/) (requires-python:>=3.6) 2023-09-12T18:16:27,432 Skipping link: not a file: https://www.piwheels.org/simple/molnet-python/ 2023-09-12T18:16:27,433 Skipping link: not a file: https://pypi.org/simple/molnet-python/ 2023-09-12T18:16:27,452 Given no hashes to check 1 links for project 'molnet-python': discarding no candidates 2023-09-12T18:16:27,470 Collecting molnet-python==0.0.9 2023-09-12T18:16:27,473 Created temporary directory: /tmp/pip-unpack-hk7sn83r 2023-09-12T18:16:27,684 Downloading molnet-python-0.0.9.tar.gz (17 kB) 2023-09-12T18:16:27,723 Added molnet-python==0.0.9 from https://files.pythonhosted.org/packages/7f/85/940dd7f8fa57754cd8198e3a7e2c53be53d222de2258e0776546c7128dd8/molnet-python-0.0.9.tar.gz to build tracker '/tmp/pip-build-tracker-l8liojdu' 2023-09-12T18:16:27,725 Running setup.py (path:/tmp/pip-wheel-rva1bdgc/molnet-python_a518d92947c54df68053750e8f06d0b8/setup.py) egg_info for package molnet-python 2023-09-12T18:16:27,726 Created temporary directory: /tmp/pip-pip-egg-info-tre1lnsw 2023-09-12T18:16:27,726 Preparing metadata (setup.py): started 2023-09-12T18:16:27,728 Running command python setup.py egg_info 2023-09-12T18:16:28,146 Traceback (most recent call last): 2023-09-12T18:16:28,146 File "", line 2, in 2023-09-12T18:16:28,147 File "", line 34, in 2023-09-12T18:16:28,147 File "/tmp/pip-wheel-rva1bdgc/molnet-python_a518d92947c54df68053750e8f06d0b8/setup.py", line 2, in 2023-09-12T18:16:28,148 import molnet 2023-09-12T18:16:28,149 File "/tmp/pip-wheel-rva1bdgc/molnet-python_a518d92947c54df68053750e8f06d0b8/molnet/__init__.py", line 1, in 2023-09-12T18:16:28,150 from molnet.molnet_config import molnet_config 2023-09-12T18:16:28,151 File "/tmp/pip-wheel-rva1bdgc/molnet-python_a518d92947c54df68053750e8f06d0b8/molnet/molnet_config.py", line 1, in 2023-09-12T18:16:28,152 from molnet.utils import Config 2023-09-12T18:16:28,153 File "/tmp/pip-wheel-rva1bdgc/molnet-python_a518d92947c54df68053750e8f06d0b8/molnet/utils.py", line 1, in 2023-09-12T18:16:28,154 from rdkit.Chem import SaltRemover 2023-09-12T18:16:28,154 ModuleNotFoundError: No module named 'rdkit' 2023-09-12T18:16:28,218 ERROR: [present-rich] python setup.py egg_info exited with 1 2023-09-12T18:16:28,231 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2023-09-12T18:16:28,231 exec(compile('"'"''"'"''"'"' 2023-09-12T18:16:28,231 # This is -- a caller that pip uses to run setup.py 2023-09-12T18:16:28,231 # 2023-09-12T18:16:28,231 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-12T18:16:28,231 # import from `distutils.core` to work with newer packaging standards. 2023-09-12T18:16:28,231 # - It provides a clear error message when setuptools is not installed. 2023-09-12T18:16:28,231 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-12T18:16:28,231 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-12T18:16:28,231 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-12T18:16:28,231 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-12T18:16:28,231 import os, sys, tokenize 2023-09-12T18:16:28,231 2023-09-12T18:16:28,231 try: 2023-09-12T18:16:28,231 import setuptools 2023-09-12T18:16:28,231 except ImportError as error: 2023-09-12T18:16:28,231 print( 2023-09-12T18:16:28,231 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-12T18:16:28,231 "the build environment.", 2023-09-12T18:16:28,231 file=sys.stderr, 2023-09-12T18:16:28,231 ) 2023-09-12T18:16:28,231 sys.exit(1) 2023-09-12T18:16:28,231 2023-09-12T18:16:28,231 __file__ = %r 2023-09-12T18:16:28,231 sys.argv[0] = __file__ 2023-09-12T18:16:28,231 2023-09-12T18:16:28,231 if os.path.exists(__file__): 2023-09-12T18:16:28,231 filename = __file__ 2023-09-12T18:16:28,231 with tokenize.open(__file__) as f: 2023-09-12T18:16:28,231 setup_py_code = f.read() 2023-09-12T18:16:28,231 else: 2023-09-12T18:16:28,231 filename = "" 2023-09-12T18:16:28,231 setup_py_code = "from setuptools import setup; setup()" 2023-09-12T18:16:28,231 2023-09-12T18:16:28,231 exec(compile(setup_py_code, filename, "exec")) 2023-09-12T18:16:28,231 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-rva1bdgc/molnet-python_a518d92947c54df68053750e8f06d0b8/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-tre1lnsw[/] 2023-09-12T18:16:28,232 [bold magenta]cwd[/]: /tmp/pip-wheel-rva1bdgc/molnet-python_a518d92947c54df68053750e8f06d0b8/ 2023-09-12T18:16:28,233 Preparing metadata (setup.py): finished with status 'error' 2023-09-12T18:16:28,235 ERROR: [present-rich] metadata generation failed 2023-09-12T18:16:28,240 Exception information: 2023-09-12T18:16:28,240 Traceback (most recent call last): 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2023-09-12T18:16:28,240 call_subprocess( 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-09-12T18:16:28,240 raise error 2023-09-12T18:16:28,240 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2023-09-12T18:16:28,240 2023-09-12T18:16:28,240 The above exception was the direct cause of the following exception: 2023-09-12T18:16:28,240 2023-09-12T18:16:28,240 Traceback (most recent call last): 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-12T18:16:28,240 status = run_func(*args) 2023-09-12T18:16:28,240 ^^^^^^^^^^^^^^^ 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-12T18:16:28,240 return func(self, options, args) 2023-09-12T18:16:28,240 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2023-09-12T18:16:28,240 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-09-12T18:16:28,240 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2023-09-12T18:16:28,240 result = self._result = resolver.resolve( 2023-09-12T18:16:28,240 ^^^^^^^^^^^^^^^^^ 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2023-09-12T18:16:28,240 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-09-12T18:16:28,240 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2023-09-12T18:16:28,240 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2023-09-12T18:16:28,240 if not criterion.candidates: 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2023-09-12T18:16:28,240 return bool(self._sequence) 2023-09-12T18:16:28,240 ^^^^^^^^^^^^^^^^^^^^ 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-09-12T18:16:28,240 return any(self) 2023-09-12T18:16:28,240 ^^^^^^^^^ 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-09-12T18:16:28,240 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-09-12T18:16:28,240 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-09-12T18:16:28,240 candidate = func() 2023-09-12T18:16:28,240 ^^^^^^ 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2023-09-12T18:16:28,240 self._link_candidate_cache[link] = LinkCandidate( 2023-09-12T18:16:28,240 ^^^^^^^^^^^^^^ 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__ 2023-09-12T18:16:28,240 super().__init__( 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__ 2023-09-12T18:16:28,240 self.dist = self._prepare() 2023-09-12T18:16:28,240 ^^^^^^^^^^^^^^^ 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare 2023-09-12T18:16:28,240 dist = self._prepare_distribution() 2023-09-12T18:16:28,240 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution 2023-09-12T18:16:28,240 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-09-12T18:16:28,240 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement 2023-09-12T18:16:28,240 return self._prepare_linked_requirement(req, parallel_builds) 2023-09-12T18:16:28,240 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement 2023-09-12T18:16:28,240 dist = _get_prepared_distribution( 2023-09-12T18:16:28,240 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2023-09-12T18:16:28,240 abstract_dist.prepare_distribution_metadata( 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata 2023-09-12T18:16:28,240 self.req.prepare_metadata() 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata 2023-09-12T18:16:28,240 self.metadata_directory = generate_metadata_legacy( 2023-09-12T18:16:28,240 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T18:16:28,240 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2023-09-12T18:16:28,240 raise MetadataGenerationFailed(package_details=details) from error 2023-09-12T18:16:28,240 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2023-09-12T18:16:28,253 Removed molnet-python==0.0.9 from https://files.pythonhosted.org/packages/7f/85/940dd7f8fa57754cd8198e3a7e2c53be53d222de2258e0776546c7128dd8/molnet-python-0.0.9.tar.gz from build tracker '/tmp/pip-build-tracker-l8liojdu' 2023-09-12T18:16:28,254 Removed build tracker: '/tmp/pip-build-tracker-l8liojdu'