2023-09-13T04:33:26,815 Created temporary directory: /tmp/pip-build-tracker-1n9ot39o 2023-09-13T04:33:26,816 Initialized build tracking at /tmp/pip-build-tracker-1n9ot39o 2023-09-13T04:33:26,816 Created build tracker: /tmp/pip-build-tracker-1n9ot39o 2023-09-13T04:33:26,817 Entered build tracker: /tmp/pip-build-tracker-1n9ot39o 2023-09-13T04:33:26,818 Created temporary directory: /tmp/pip-wheel-oig4qywy 2023-09-13T04:33:26,821 Created temporary directory: /tmp/pip-ephem-wheel-cache-z8u8acvq 2023-09-13T04:33:26,842 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-13T04:33:26,846 2 location(s) to search for versions of unifrac: 2023-09-13T04:33:26,846 * https://pypi.org/simple/unifrac/ 2023-09-13T04:33:26,846 * https://www.piwheels.org/simple/unifrac/ 2023-09-13T04:33:26,847 Fetching project page and analyzing links: https://pypi.org/simple/unifrac/ 2023-09-13T04:33:26,848 Getting page https://pypi.org/simple/unifrac/ 2023-09-13T04:33:26,849 Found index url https://pypi.org/simple/ 2023-09-13T04:33:27,062 Fetched page https://pypi.org/simple/unifrac/ as application/vnd.pypi.simple.v1+json 2023-09-13T04:33:27,063 Found link https://files.pythonhosted.org/packages/be/89/683b0925dadf0c63f015aba45e56d943a738caa70f736233e8654dc4a713/unifrac-0.10.0.tar.gz (from https://pypi.org/simple/unifrac/), version: 0.10.0 2023-09-13T04:33:27,064 Found link https://files.pythonhosted.org/packages/c4/fe/bf6d6113ab675272f6eb6e593d6842e4f2c074ee9152b6f4316a621462f7/unifrac-0.20.1.tar.gz (from https://pypi.org/simple/unifrac/), version: 0.20.1 2023-09-13T04:33:27,065 Found link https://files.pythonhosted.org/packages/ef/40/fcc8a73f40b27682661cad19dac3fbc0ed4f5cd3593d86939b2eb7309956/unifrac-0.20.3.tar.gz (from https://pypi.org/simple/unifrac/), version: 0.20.3 2023-09-13T04:33:27,065 Fetching project page and analyzing links: https://www.piwheels.org/simple/unifrac/ 2023-09-13T04:33:27,066 Getting page https://www.piwheels.org/simple/unifrac/ 2023-09-13T04:33:27,067 Found index url https://www.piwheels.org/simple/ 2023-09-13T04:33:27,383 Fetched page https://www.piwheels.org/simple/unifrac/ as text/html 2023-09-13T04:33:27,384 Skipping link: not a file: https://www.piwheels.org/simple/unifrac/ 2023-09-13T04:33:27,385 Skipping link: not a file: https://pypi.org/simple/unifrac/ 2023-09-13T04:33:27,403 Given no hashes to check 1 links for project 'unifrac': discarding no candidates 2023-09-13T04:33:27,421 Collecting unifrac==0.20.1 2023-09-13T04:33:27,424 Created temporary directory: /tmp/pip-unpack-qf32srzy 2023-09-13T04:33:27,674 Downloading unifrac-0.20.1.tar.gz (231 kB) 2023-09-13T04:33:27,908 Added unifrac==0.20.1 from https://files.pythonhosted.org/packages/c4/fe/bf6d6113ab675272f6eb6e593d6842e4f2c074ee9152b6f4316a621462f7/unifrac-0.20.1.tar.gz to build tracker '/tmp/pip-build-tracker-1n9ot39o' 2023-09-13T04:33:27,910 Running setup.py (path:/tmp/pip-wheel-oig4qywy/unifrac_613b3bc11ba4456b98178648e78b1851/setup.py) egg_info for package unifrac 2023-09-13T04:33:27,911 Created temporary directory: /tmp/pip-pip-egg-info-2d1aqao6 2023-09-13T04:33:27,911 Preparing metadata (setup.py): started 2023-09-13T04:33:27,912 Running command python setup.py egg_info 2023-09-13T04:33:28,524 Traceback (most recent call last): 2023-09-13T04:33:28,524 File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 23, in 2023-09-13T04:33:28,525 from . import multiarray 2023-09-13T04:33:28,525 File "/usr/local/lib/python3.11/dist-packages/numpy/core/multiarray.py", line 10, in 2023-09-13T04:33:28,526 from . import overrides 2023-09-13T04:33:28,527 File "/usr/local/lib/python3.11/dist-packages/numpy/core/overrides.py", line 8, in 2023-09-13T04:33:28,527 from numpy.core._multiarray_umath import ( 2023-09-13T04:33:28,528 ImportError: libopenblas.so.0: cannot open shared object file: No such file or directory 2023-09-13T04:33:28,530 During handling of the above exception, another exception occurred: 2023-09-13T04:33:28,532 Traceback (most recent call last): 2023-09-13T04:33:28,533 File "", line 2, in 2023-09-13T04:33:28,534 File "", line 34, in 2023-09-13T04:33:28,535 File "/tmp/pip-wheel-oig4qywy/unifrac_613b3bc11ba4456b98178648e78b1851/setup.py", line 11, in 2023-09-13T04:33:28,535 import numpy as np 2023-09-13T04:33:28,536 File "/usr/local/lib/python3.11/dist-packages/numpy/__init__.py", line 139, in 2023-09-13T04:33:28,537 from . import core 2023-09-13T04:33:28,537 File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 49, in 2023-09-13T04:33:28,538 raise ImportError(msg) 2023-09-13T04:33:28,539 ImportError: 2023-09-13T04:33:28,540 IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 2023-09-13T04:33:28,541 Importing the numpy C-extensions failed. This error can happen for 2023-09-13T04:33:28,542 many reasons, often due to issues with your setup or how NumPy was 2023-09-13T04:33:28,543 installed. 2023-09-13T04:33:28,544 We have compiled some common reasons and troubleshooting tips at: 2023-09-13T04:33:28,546 https://numpy.org/devdocs/user/troubleshooting-importerror.html 2023-09-13T04:33:28,547 Please note and check the following: 2023-09-13T04:33:28,549 * The Python version is: Python3.11 from "/usr/bin/python3" 2023-09-13T04:33:28,550 * The NumPy version is: "1.25.2" 2023-09-13T04:33:28,551 and make sure that they are the versions you expect. 2023-09-13T04:33:28,552 Please carefully study the documentation linked above for further help. 2023-09-13T04:33:28,553 Original error was: libopenblas.so.0: cannot open shared object file: No such file or directory 2023-09-13T04:33:28,613 ERROR: [present-rich] python setup.py egg_info exited with 1 2023-09-13T04:33:28,626 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2023-09-13T04:33:28,626 exec(compile('"'"''"'"''"'"' 2023-09-13T04:33:28,626 # This is -- a caller that pip uses to run setup.py 2023-09-13T04:33:28,626 # 2023-09-13T04:33:28,626 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-13T04:33:28,626 # import from `distutils.core` to work with newer packaging standards. 2023-09-13T04:33:28,626 # - It provides a clear error message when setuptools is not installed. 2023-09-13T04:33:28,626 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-13T04:33:28,626 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-13T04:33:28,626 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-13T04:33:28,626 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-13T04:33:28,626 import os, sys, tokenize 2023-09-13T04:33:28,626 2023-09-13T04:33:28,626 try: 2023-09-13T04:33:28,626 import setuptools 2023-09-13T04:33:28,626 except ImportError as error: 2023-09-13T04:33:28,626 print( 2023-09-13T04:33:28,626 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-13T04:33:28,626 "the build environment.", 2023-09-13T04:33:28,626 file=sys.stderr, 2023-09-13T04:33:28,626 ) 2023-09-13T04:33:28,626 sys.exit(1) 2023-09-13T04:33:28,626 2023-09-13T04:33:28,626 __file__ = %r 2023-09-13T04:33:28,626 sys.argv[0] = __file__ 2023-09-13T04:33:28,626 2023-09-13T04:33:28,626 if os.path.exists(__file__): 2023-09-13T04:33:28,626 filename = __file__ 2023-09-13T04:33:28,626 with tokenize.open(__file__) as f: 2023-09-13T04:33:28,626 setup_py_code = f.read() 2023-09-13T04:33:28,626 else: 2023-09-13T04:33:28,626 filename = "" 2023-09-13T04:33:28,626 setup_py_code = "from setuptools import setup; setup()" 2023-09-13T04:33:28,626 2023-09-13T04:33:28,626 exec(compile(setup_py_code, filename, "exec")) 2023-09-13T04:33:28,626 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-oig4qywy/unifrac_613b3bc11ba4456b98178648e78b1851/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-2d1aqao6[/] 2023-09-13T04:33:28,627 [bold magenta]cwd[/]: /tmp/pip-wheel-oig4qywy/unifrac_613b3bc11ba4456b98178648e78b1851/ 2023-09-13T04:33:28,628 Preparing metadata (setup.py): finished with status 'error' 2023-09-13T04:33:28,629 ERROR: [present-rich] metadata generation failed 2023-09-13T04:33:28,634 Exception information: 2023-09-13T04:33:28,634 Traceback (most recent call last): 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2023-09-13T04:33:28,634 call_subprocess( 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-09-13T04:33:28,634 raise error 2023-09-13T04:33:28,634 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2023-09-13T04:33:28,634 2023-09-13T04:33:28,634 The above exception was the direct cause of the following exception: 2023-09-13T04:33:28,634 2023-09-13T04:33:28,634 Traceback (most recent call last): 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-13T04:33:28,634 status = run_func(*args) 2023-09-13T04:33:28,634 ^^^^^^^^^^^^^^^ 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-13T04:33:28,634 return func(self, options, args) 2023-09-13T04:33:28,634 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2023-09-13T04:33:28,634 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-09-13T04:33:28,634 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2023-09-13T04:33:28,634 result = self._result = resolver.resolve( 2023-09-13T04:33:28,634 ^^^^^^^^^^^^^^^^^ 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2023-09-13T04:33:28,634 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-09-13T04:33:28,634 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2023-09-13T04:33:28,634 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2023-09-13T04:33:28,634 if not criterion.candidates: 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2023-09-13T04:33:28,634 return bool(self._sequence) 2023-09-13T04:33:28,634 ^^^^^^^^^^^^^^^^^^^^ 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-09-13T04:33:28,634 return any(self) 2023-09-13T04:33:28,634 ^^^^^^^^^ 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-09-13T04:33:28,634 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-09-13T04:33:28,634 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-09-13T04:33:28,634 candidate = func() 2023-09-13T04:33:28,634 ^^^^^^ 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2023-09-13T04:33:28,634 self._link_candidate_cache[link] = LinkCandidate( 2023-09-13T04:33:28,634 ^^^^^^^^^^^^^^ 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__ 2023-09-13T04:33:28,634 super().__init__( 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__ 2023-09-13T04:33:28,634 self.dist = self._prepare() 2023-09-13T04:33:28,634 ^^^^^^^^^^^^^^^ 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare 2023-09-13T04:33:28,634 dist = self._prepare_distribution() 2023-09-13T04:33:28,634 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution 2023-09-13T04:33:28,634 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-09-13T04:33:28,634 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement 2023-09-13T04:33:28,634 return self._prepare_linked_requirement(req, parallel_builds) 2023-09-13T04:33:28,634 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement 2023-09-13T04:33:28,634 dist = _get_prepared_distribution( 2023-09-13T04:33:28,634 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2023-09-13T04:33:28,634 abstract_dist.prepare_distribution_metadata( 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata 2023-09-13T04:33:28,634 self.req.prepare_metadata() 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata 2023-09-13T04:33:28,634 self.metadata_directory = generate_metadata_legacy( 2023-09-13T04:33:28,634 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-13T04:33:28,634 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2023-09-13T04:33:28,634 raise MetadataGenerationFailed(package_details=details) from error 2023-09-13T04:33:28,634 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2023-09-13T04:33:28,647 Removed unifrac==0.20.1 from https://files.pythonhosted.org/packages/c4/fe/bf6d6113ab675272f6eb6e593d6842e4f2c074ee9152b6f4316a621462f7/unifrac-0.20.1.tar.gz from build tracker '/tmp/pip-build-tracker-1n9ot39o' 2023-09-13T04:33:28,648 Removed build tracker: '/tmp/pip-build-tracker-1n9ot39o'