2023-09-13T08:06:25,023 Created temporary directory: /tmp/pip-build-tracker-i5xdrw3e
2023-09-13T08:06:25,024 Initialized build tracking at /tmp/pip-build-tracker-i5xdrw3e
2023-09-13T08:06:25,025 Created build tracker: /tmp/pip-build-tracker-i5xdrw3e
2023-09-13T08:06:25,025 Entered build tracker: /tmp/pip-build-tracker-i5xdrw3e
2023-09-13T08:06:25,026 Created temporary directory: /tmp/pip-wheel-4fzttawj
2023-09-13T08:06:25,029 Created temporary directory: /tmp/pip-ephem-wheel-cache-g6_u48dg
2023-09-13T08:06:25,051 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-13T08:06:25,054 2 location(s) to search for versions of bio-embeddings-bepler:
2023-09-13T08:06:25,054 * https://pypi.org/simple/bio-embeddings-bepler/
2023-09-13T08:06:25,054 * https://www.piwheels.org/simple/bio-embeddings-bepler/
2023-09-13T08:06:25,056 Fetching project page and analyzing links: https://pypi.org/simple/bio-embeddings-bepler/
2023-09-13T08:06:25,056 Getting page https://pypi.org/simple/bio-embeddings-bepler/
2023-09-13T08:06:25,058 Found index url https://pypi.org/simple/
2023-09-13T08:06:25,200 Fetched page https://pypi.org/simple/bio-embeddings-bepler/ as application/vnd.pypi.simple.v1+json
2023-09-13T08:06:25,202   Skipping link: No binaries permitted for bio-embeddings-bepler: https://files.pythonhosted.org/packages/24/f3/57d97b719813d04c35bfc98c3ccfe9520f097d1741f19afad2e5a053cb99/bio_embeddings_bepler-0.0.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/bio-embeddings-bepler/)
2023-09-13T08:06:25,203   Found link https://files.pythonhosted.org/packages/a3/ff/3aa07849cc8cd4135a9d4554d675e2f383be2959a50bb7f94d9a4144ca44/bio_embeddings_bepler-0.0.0.tar.gz (from https://pypi.org/simple/bio-embeddings-bepler/), version: 0.0.0
2023-09-13T08:06:25,203   Skipping link: No binaries permitted for bio-embeddings-bepler: https://files.pythonhosted.org/packages/68/19/da14ff02e9f834ccd9d07444cda0ec4a58f4b850d560dca80a56b7d29ad7/bio_embeddings_bepler-0.0.1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/bio-embeddings-bepler/)
2023-09-13T08:06:25,204   Found link https://files.pythonhosted.org/packages/f8/6e/648e10a489dbf0940269c57e23f1e19fefa1d8c20a90ae135d8245cbb304/bio_embeddings_bepler-0.0.1.tar.gz (from https://pypi.org/simple/bio-embeddings-bepler/), version: 0.0.1
2023-09-13T08:06:25,205 Fetching project page and analyzing links: https://www.piwheels.org/simple/bio-embeddings-bepler/
2023-09-13T08:06:25,205 Getting page https://www.piwheels.org/simple/bio-embeddings-bepler/
2023-09-13T08:06:25,207 Found index url https://www.piwheels.org/simple/
2023-09-13T08:06:26,471 Fetched page https://www.piwheels.org/simple/bio-embeddings-bepler/ as text/html
2023-09-13T08:06:26,477   Skipping link: No binaries permitted for bio-embeddings-bepler: https://www.piwheels.org/simple/bio-embeddings-bepler/bio_embeddings_bepler-0.0.1-cp35-cp35m-linux_armv6l.whl#sha256=4301727b639f91faf27dee226bb5cc85f090d4f66e7d728f04355cf9df0f361a (from https://www.piwheels.org/simple/bio-embeddings-bepler/)
2023-09-13T08:06:26,479   Skipping link: No binaries permitted for bio-embeddings-bepler: https://www.piwheels.org/simple/bio-embeddings-bepler/bio_embeddings_bepler-0.0.1-cp35-cp35m-linux_armv7l.whl#sha256=4301727b639f91faf27dee226bb5cc85f090d4f66e7d728f04355cf9df0f361a (from https://www.piwheels.org/simple/bio-embeddings-bepler/)
2023-09-13T08:06:26,480   Skipping link: No binaries permitted for bio-embeddings-bepler: https://www.piwheels.org/simple/bio-embeddings-bepler/bio_embeddings_bepler-0.0.1-cp37-cp37m-linux_armv6l.whl#sha256=4802d44ff0dac5c267684cac25a9355c2a86c8b713ac25586d6a2ea802cdb660 (from https://www.piwheels.org/simple/bio-embeddings-bepler/)
2023-09-13T08:06:26,481   Skipping link: No binaries permitted for bio-embeddings-bepler: https://www.piwheels.org/simple/bio-embeddings-bepler/bio_embeddings_bepler-0.0.1-cp37-cp37m-linux_armv7l.whl#sha256=4802d44ff0dac5c267684cac25a9355c2a86c8b713ac25586d6a2ea802cdb660 (from https://www.piwheels.org/simple/bio-embeddings-bepler/)
2023-09-13T08:06:26,482   Skipping link: No binaries permitted for bio-embeddings-bepler: https://www.piwheels.org/simple/bio-embeddings-bepler/bio_embeddings_bepler-0.0.1-cp39-cp39-linux_armv6l.whl#sha256=dc0d34ec7f4f1d35d489ce16e3396de8ea8963eb76ebcefb76e97798ff3b10a2 (from https://www.piwheels.org/simple/bio-embeddings-bepler/)
2023-09-13T08:06:26,483   Skipping link: No binaries permitted for bio-embeddings-bepler: https://www.piwheels.org/simple/bio-embeddings-bepler/bio_embeddings_bepler-0.0.1-cp39-cp39-linux_armv7l.whl#sha256=dc0d34ec7f4f1d35d489ce16e3396de8ea8963eb76ebcefb76e97798ff3b10a2 (from https://www.piwheels.org/simple/bio-embeddings-bepler/)
2023-09-13T08:06:26,485 Skipping link: not a file: https://www.piwheels.org/simple/bio-embeddings-bepler/
2023-09-13T08:06:26,486 Skipping link: not a file: https://pypi.org/simple/bio-embeddings-bepler/
2023-09-13T08:06:26,530 Given no hashes to check 1 links for project 'bio-embeddings-bepler': discarding no candidates
2023-09-13T08:06:26,550 Collecting bio-embeddings-bepler==0.0.1
2023-09-13T08:06:26,552   Created temporary directory: /tmp/pip-unpack-mlhvwchk
2023-09-13T08:06:26,692   Downloading bio_embeddings_bepler-0.0.1.tar.gz (140 kB)
2023-09-13T08:06:26,841   Added bio-embeddings-bepler==0.0.1 from https://files.pythonhosted.org/packages/f8/6e/648e10a489dbf0940269c57e23f1e19fefa1d8c20a90ae135d8245cbb304/bio_embeddings_bepler-0.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-i5xdrw3e'
2023-09-13T08:06:26,847   Created temporary directory: /tmp/pip-build-env-etqigcjy
2023-09-13T08:06:26,851   Installing build dependencies: started
2023-09-13T08:06:26,852   Running command pip subprocess to install build dependencies
2023-09-13T08:06:27,983   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-09-13T08:06:28,447   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-13T08:06:33,689   Collecting setuptools>=40.9.0
2023-09-13T08:06:33,690     Obtaining dependency information for setuptools>=40.9.0 from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata
2023-09-13T08:06:33,696     Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB)
2023-09-13T08:06:37,637   Collecting wheel
2023-09-13T08:06:39,501     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-09-13T08:06:40,966   Collecting Cython
2023-09-13T08:06:40,967     Obtaining dependency information for Cython from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata
2023-09-13T08:06:40,972     Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB)
2023-09-13T08:06:41,673     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-13T08:06:41,680     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-13T08:06:41,687     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-13T08:06:41,697     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-13T08:06:41,704     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-13T08:06:46,885   Collecting numpy
2023-09-13T08:06:51,367     Using cached https://www.piwheels.org/simple/numpy/numpy-1.25.2-cp311-cp311-linux_armv7l.whl (12.5 MB)
2023-09-13T08:06:51,965   Using cached setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-09-13T08:06:52,003   Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB)
2023-09-13T08:06:53,706   Installing collected packages: wheel, setuptools, numpy, Cython
2023-09-13T08:06:53,940     Creating /tmp/pip-build-env-etqigcjy/overlay/local/bin
2023-09-13T08:06:53,942     changing mode of /tmp/pip-build-env-etqigcjy/overlay/local/bin/wheel to 755
2023-09-13T08:07:04,925     changing mode of /tmp/pip-build-env-etqigcjy/overlay/local/bin/f2py to 755
2023-09-13T08:07:04,927     changing mode of /tmp/pip-build-env-etqigcjy/overlay/local/bin/f2py3 to 755
2023-09-13T08:07:04,929     changing mode of /tmp/pip-build-env-etqigcjy/overlay/local/bin/f2py3.11 to 755
2023-09-13T08:07:07,735     changing mode of /tmp/pip-build-env-etqigcjy/overlay/local/bin/cygdb to 755
2023-09-13T08:07:07,737     changing mode of /tmp/pip-build-env-etqigcjy/overlay/local/bin/cython to 755
2023-09-13T08:07:07,739     changing mode of /tmp/pip-build-env-etqigcjy/overlay/local/bin/cythonize to 755
2023-09-13T08:07:07,773   Successfully installed Cython-3.0.2 numpy-1.25.2 setuptools-68.2.2 wheel-0.41.2
2023-09-13T08:07:08,379   Installing build dependencies: finished with status 'done'
2023-09-13T08:07:08,382   Getting requirements to build wheel: started
2023-09-13T08:07:08,383   Running command Getting requirements to build wheel
2023-09-13T08:07:10,957   /tmp/pip-build-env-etqigcjy/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-4fzttawj/bio-embeddings-bepler_131bc1a43cb84aa8a6ec477f463ef0ed/bepler/alignment.pyx
2023-09-13T08:07:10,958     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-13T08:07:13,602   /tmp/pip-build-env-etqigcjy/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-4fzttawj/bio-embeddings-bepler_131bc1a43cb84aa8a6ec477f463ef0ed/bepler/metrics.pyx
2023-09-13T08:07:13,603     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-13T08:07:14,602   Compiling bepler/metrics.pyx because it changed.
2023-09-13T08:07:14,603   Compiling bepler/alignment.pyx because it changed.
2023-09-13T08:07:14,604   [1/2] Cythonizing bepler/alignment.pyx
2023-09-13T08:07:14,604   [2/2] Cythonizing bepler/metrics.pyx
2023-09-13T08:07:15,054   Getting requirements to build wheel: finished with status 'done'
2023-09-13T08:07:15,068   Created temporary directory: /tmp/pip-modern-metadata-vls536ru
2023-09-13T08:07:15,071   Preparing metadata (pyproject.toml): started
2023-09-13T08:07:15,072   Running command Preparing metadata (pyproject.toml)
2023-09-13T08:07:16,860   Preparing metadata (pyproject.toml): finished with status 'done'
2023-09-13T08:07:16,865   Source in /tmp/pip-wheel-4fzttawj/bio-embeddings-bepler_131bc1a43cb84aa8a6ec477f463ef0ed has version 0.0.1, which satisfies requirement bio-embeddings-bepler==0.0.1 from https://files.pythonhosted.org/packages/f8/6e/648e10a489dbf0940269c57e23f1e19fefa1d8c20a90ae135d8245cbb304/bio_embeddings_bepler-0.0.1.tar.gz
2023-09-13T08:07:16,866   Removed bio-embeddings-bepler==0.0.1 from https://files.pythonhosted.org/packages/f8/6e/648e10a489dbf0940269c57e23f1e19fefa1d8c20a90ae135d8245cbb304/bio_embeddings_bepler-0.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-i5xdrw3e'
2023-09-13T08:07:16,869 Created temporary directory: /tmp/pip-unpack-9lck664g
2023-09-13T08:07:16,870 Created temporary directory: /tmp/pip-unpack-v4uew14h
2023-09-13T08:07:16,872 Building wheels for collected packages: bio-embeddings-bepler
2023-09-13T08:07:16,878   Created temporary directory: /tmp/pip-wheel-l1ixcpqr
2023-09-13T08:07:16,879   Destination directory: /tmp/pip-wheel-l1ixcpqr
2023-09-13T08:07:16,881   Building wheel for bio-embeddings-bepler (pyproject.toml): started
2023-09-13T08:07:16,882   Running command Building wheel for bio-embeddings-bepler (pyproject.toml)
2023-09-13T08:07:18,819   In file included from /tmp/pip-build-env-etqigcjy/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-13T08:07:18,820                    from /tmp/pip-build-env-etqigcjy/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-13T08:07:18,820                    from /tmp/pip-build-env-etqigcjy/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-13T08:07:18,821                    from bepler/metrics.c:1167:
2023-09-13T08:07:18,821   /tmp/pip-build-env-etqigcjy/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-13T08:07:18,821      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-13T08:07:18,822         |  ^~~~~~~
2023-09-13T08:07:24,388   In file included from /tmp/pip-build-env-etqigcjy/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-13T08:07:24,388                    from /tmp/pip-build-env-etqigcjy/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-13T08:07:24,389                    from /tmp/pip-build-env-etqigcjy/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-13T08:07:24,389                    from bepler/alignment.c:1167:
2023-09-13T08:07:24,390   /tmp/pip-build-env-etqigcjy/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-13T08:07:24,390      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-13T08:07:24,391         |  ^~~~~~~
2023-09-13T08:07:51,897   Building wheel for bio-embeddings-bepler (pyproject.toml): finished with status 'done'
2023-09-13T08:07:51,918   Created wheel for bio-embeddings-bepler: filename=bio_embeddings_bepler-0.0.1-cp311-cp311-linux_armv7l.whl size=565743 sha256=484691ace2f99c4b22c37d411788ae971c4b5cf408a57338309313405b764fa2
2023-09-13T08:07:51,919   Stored in directory: /tmp/pip-ephem-wheel-cache-g6_u48dg/wheels/23/65/aa/ea040fab2e7e12fa73d08535b69ef25dfbbf637ad819ed4c6f
2023-09-13T08:07:51,928 Successfully built bio-embeddings-bepler
2023-09-13T08:07:51,951 Removed build tracker: '/tmp/pip-build-tracker-i5xdrw3e'