2023-09-13T15:54:34,707 Created temporary directory: /tmp/pip-build-tracker-oyijkkij 2023-09-13T15:54:34,708 Initialized build tracking at /tmp/pip-build-tracker-oyijkkij 2023-09-13T15:54:34,709 Created build tracker: /tmp/pip-build-tracker-oyijkkij 2023-09-13T15:54:34,709 Entered build tracker: /tmp/pip-build-tracker-oyijkkij 2023-09-13T15:54:34,710 Created temporary directory: /tmp/pip-wheel-oyzlyvkb 2023-09-13T15:54:34,713 Created temporary directory: /tmp/pip-ephem-wheel-cache-kkhy2_m3 2023-09-13T15:54:34,735 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-13T15:54:34,739 2 location(s) to search for versions of pybedtools: 2023-09-13T15:54:34,739 * https://pypi.org/simple/pybedtools/ 2023-09-13T15:54:34,739 * https://www.piwheels.org/simple/pybedtools/ 2023-09-13T15:54:34,740 Fetching project page and analyzing links: https://pypi.org/simple/pybedtools/ 2023-09-13T15:54:34,740 Getting page https://pypi.org/simple/pybedtools/ 2023-09-13T15:54:34,742 Found index url https://pypi.org/simple/ 2023-09-13T15:54:34,956 Fetched page https://pypi.org/simple/pybedtools/ as application/vnd.pypi.simple.v1+json 2023-09-13T15:54:34,962 Found link https://files.pythonhosted.org/packages/00/d9/aca9636b3e5b29f232fd6f60859f07f3420ec3c0712b50cb25c734a02a1f/pybedtools-0.2.2dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.2.2dev 2023-09-13T15:54:34,963 Found link https://files.pythonhosted.org/packages/44/19/a9bebb9eccd8d64d58202d5b3a151de81ffc7703a47503161b7615554703/pybedtools-0.5dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5dev 2023-09-13T15:54:34,964 Found link https://files.pythonhosted.org/packages/e4/2f/e842c6b1165d706ebc62c931c11d4dfffe60e6b045ecf80eef7ea78d7afc/pybedtools-0.5rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5rc1 2023-09-13T15:54:34,964 Found link https://files.pythonhosted.org/packages/85/17/c89028c00537638629ca21be7f1b84e963fc8b63c1e9a5fda9884f86fb90/pybedtools-0.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5 2023-09-13T15:54:34,965 Found link https://files.pythonhosted.org/packages/e7/9b/f082d2db470a0c9ba777a0d661fd5a7292c367840880040940de4a705e1f/pybedtools-0.5.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5.5 2023-09-13T15:54:34,966 Found link https://files.pythonhosted.org/packages/3c/e7/365015ec8104195329635cb75ef745bff45d905271cd165f5048efaf48e3/pybedtools-0.6rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6rc1 2023-09-13T15:54:34,966 Found link https://files.pythonhosted.org/packages/04/ce/0e1480725fe80eb9a401f59e1bcc28fce721f6c2c5d7be233894d0154551/pybedtools-0.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6 2023-09-13T15:54:34,967 Found link https://files.pythonhosted.org/packages/ac/25/c971ba83c6df08cbd17626339ec637df57a0aa409ba3042408ff349dd710/pybedtools-0.6.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.1 2023-09-13T15:54:34,968 Found link https://files.pythonhosted.org/packages/3e/71/cb09c7b874a87803f9fb9a9b679d02a82879b9cadca4c93756e05e65a439/pybedtools-0.6.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.2 2023-09-13T15:54:34,968 Found link https://files.pythonhosted.org/packages/28/0b/15291a1aac0a2a1eb814a0c883ccebf2eebaebbef9923bfa0444df0cb3a8/pybedtools-0.6.3.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.3 2023-09-13T15:54:34,969 Found link https://files.pythonhosted.org/packages/7a/12/73027be04fc57dd3340e2120f0148c0aca569b16e62333f32a40b2b06ee0/pybedtools-0.6.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.4 2023-09-13T15:54:34,970 Found link https://files.pythonhosted.org/packages/a4/98/dab963ff44ddd40849a01b145b6d769158d9794b979fdbfd173728e06e5b/pybedtools-0.6.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.5 2023-09-13T15:54:34,970 Found link https://files.pythonhosted.org/packages/a3/91/02e900caea18ee909665440727222a9f37c9a532170c52684123f07d6e21/pybedtools-0.6.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.6 2023-09-13T15:54:34,971 Found link https://files.pythonhosted.org/packages/af/ff/7d488b19b8e4109bbaf7b7e4c5dc53207f2c4354d7729cf73f17a79fa104/pybedtools-0.6.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.7 2023-09-13T15:54:34,972 Found link https://files.pythonhosted.org/packages/aa/e9/c92a7e58326bf76534af1fbd4074def6999130b1838b4dcc51e9f3ba5e17/pybedtools-0.6.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.8 2023-09-13T15:54:34,972 Found link https://files.pythonhosted.org/packages/79/20/2a0861cc9ffc41043efd814cdf860828f4b2213573c82ea6138eb6cb221b/pybedtools-0.6.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.9 2023-09-13T15:54:34,973 Found link https://files.pythonhosted.org/packages/e6/8d/06beb4e8a9e9a4ce042af337a5b855a789da586072d0c418ed9cb9398628/pybedtools-0.7.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.0 2023-09-13T15:54:34,974 Found link https://files.pythonhosted.org/packages/b5/1c/1b7e66668105e5b84cc6224a54ce552c6a6113e9b34c980fc436140e6be1/pybedtools-0.7.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.1 2023-09-13T15:54:34,974 Found link https://files.pythonhosted.org/packages/a2/43/d80dbf32da421c78ea84a386402e1840dd06f3aba7e5fe73e8134e1ce50a/pybedtools-0.7.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.4 2023-09-13T15:54:34,975 Found link https://files.pythonhosted.org/packages/ed/f1/2caa4dc57b62707f0df147c0820d1fc8565e439c5f5c86778df7a2fec59f/pybedtools-0.7.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.5 2023-09-13T15:54:34,975 Found link https://files.pythonhosted.org/packages/f4/49/ce7ccc0ad79189eb8b8eec170c350643e7a209f98e34dae239a954d6fdb0/pybedtools-0.7.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.6 2023-09-13T15:54:34,976 Found link https://files.pythonhosted.org/packages/c2/a6/29fd41e86b38e7ca39eb7818c422e927534f2bd324c34cfd411cfca203b0/pybedtools-0.7.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.7 2023-09-13T15:54:34,977 Found link https://files.pythonhosted.org/packages/2d/ee/aa19e50e03e06c817d00eadf8b56824b9e473da8c3e8ca3b33a11717ee6f/pybedtools-0.7.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.8 2023-09-13T15:54:34,977 Found link https://files.pythonhosted.org/packages/7c/66/8aecffd830eddbd05c1c3e737f87220cef9f2a8358f1d692f85b30269520/pybedtools-0.7.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.9 2023-09-13T15:54:34,978 Found link https://files.pythonhosted.org/packages/09/57/e7668e8644c60413be05b8cc9c23aaea3a0717b4025843d8c26b7c4822af/pybedtools-0.7.10.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.10 2023-09-13T15:54:34,978 Found link https://files.pythonhosted.org/packages/ca/b6/af143d5247cfe331e32c96ca92056293140eb8ce788d37842f6dcea734b4/pybedtools-0.8.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.0 2023-09-13T15:54:34,979 Found link https://files.pythonhosted.org/packages/bf/14/152220f39cda6b9b72810eeed103c6ec78422429adabe3aafc3eaf6feb40/pybedtools-0.8.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.1 2023-09-13T15:54:34,980 Found link https://files.pythonhosted.org/packages/5b/57/46e9c8135954550d1d3a05db5b0462a264239f7f71c78af304bb47c5c900/pybedtools-0.8.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.2 2023-09-13T15:54:34,980 Found link https://files.pythonhosted.org/packages/58/e2/410bb188b47582e2fd2f7176173b7b7bf46e122bb17fb4422552f4a6c604/pybedtools-0.9.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.0 2023-09-13T15:54:34,981 Found link https://files.pythonhosted.org/packages/38/00/f07c17e25f9cc8e2d22b30aace73733e275b1804196f744f0178012a0d16/pybedtools-0.9.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.1 2023-09-13T15:54:34,982 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybedtools/ 2023-09-13T15:54:34,983 Getting page https://www.piwheels.org/simple/pybedtools/ 2023-09-13T15:54:34,984 Found index url https://www.piwheels.org/simple/ 2023-09-13T15:54:35,265 Fetched page https://www.piwheels.org/simple/pybedtools/ as text/html 2023-09-13T15:54:35,282 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aac4ce2ebe92db07c21f083906878a68f16480f350569fd0e6765abad7cc0212 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,283 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aac4ce2ebe92db07c21f083906878a68f16480f350569fd0e6765abad7cc0212 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,283 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=c7f6b104f90209f3bba532c14d050fd36cf6dcb6a25866f1c57d2eb933853fd1 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,284 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=c7f6b104f90209f3bba532c14d050fd36cf6dcb6a25866f1c57d2eb933853fd1 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,284 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=3c02b8607ef1c00a75a68c36b166b84888b4520947155806b468dee31f6fe065 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,285 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=3c02b8607ef1c00a75a68c36b166b84888b4520947155806b468dee31f6fe065 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,285 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=79bc0a90018bbfd60276901e072ab165804d2ff5f8ad60fc24cd87fd4796ed32 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,286 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=79bc0a90018bbfd60276901e072ab165804d2ff5f8ad60fc24cd87fd4796ed32 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,286 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.0-cp35-cp35m-linux_armv7l.whl#sha256=eb4cf0816506d2cb8baec62d12acfce4105a47818e36316fc202cea4a1bebcff (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,287 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.0-cp35-cp35m-linux_armv6l.whl#sha256=eb4cf0816506d2cb8baec62d12acfce4105a47818e36316fc202cea4a1bebcff (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,287 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=07a180e8ec94b79db1ecf18795ded10f9fafcb7586dd2ac3fc183059d9e20192 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,288 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=07a180e8ec94b79db1ecf18795ded10f9fafcb7586dd2ac3fc183059d9e20192 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,289 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=fe412d87eeebb9a05dbdae0f5730b7722874602038420cc1802a5f7bfd21aaa9 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,289 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=fe412d87eeebb9a05dbdae0f5730b7722874602038420cc1802a5f7bfd21aaa9 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,290 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.2-cp35-cp35m-linux_armv7l.whl#sha256=282cbbf8e41d74ce886483a369858d3a07dd0de1e195b0342f6b9a7312e3b43d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,290 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.2-cp35-cp35m-linux_armv6l.whl#sha256=282cbbf8e41d74ce886483a369858d3a07dd0de1e195b0342f6b9a7312e3b43d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,291 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=3e7766b5993aa9ac36aceacfa1e80ef13e5d9fb9a3820c15f4c1680393929f1d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,291 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=3e7766b5993aa9ac36aceacfa1e80ef13e5d9fb9a3820c15f4c1680393929f1d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,292 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp35-cp35m-linux_armv7l.whl#sha256=8c33ac79af076bf58483627cf7d7e4bb5d76b3214a695335c9e21156cdb13885 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,292 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp35-cp35m-linux_armv6l.whl#sha256=8c33ac79af076bf58483627cf7d7e4bb5d76b3214a695335c9e21156cdb13885 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,293 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp34-cp34m-linux_armv6l.whl#sha256=ea1a8e0e4aa20ad4cc2567ce39857ab0d8a90edb67031434d956ac52360f441f (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,293 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp34-cp34m-linux_armv7l.whl#sha256=ea1a8e0e4aa20ad4cc2567ce39857ab0d8a90edb67031434d956ac52360f441f (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,294 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=0ee5a5a105c113f529af8fd039abbf4775b35d007315becdd315645369270e6d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,294 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=0ee5a5a105c113f529af8fd039abbf4775b35d007315becdd315645369270e6d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,295 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=ee1a206c84220ca1b4d10294ea3f59da5c4d7f7c0538ec4af577c690512abe2b (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,296 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=ee1a206c84220ca1b4d10294ea3f59da5c4d7f7c0538ec4af577c690512abe2b (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,296 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.0-cp35-cp35m-linux_armv7l.whl#sha256=ca8ca8831458cc02917e93095ee6b3b80499f3d59ec1288a02b7f12a0b77f337 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,297 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.0-cp35-cp35m-linux_armv6l.whl#sha256=ca8ca8831458cc02917e93095ee6b3b80499f3d59ec1288a02b7f12a0b77f337 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,297 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.0-cp34-cp34m-linux_armv6l.whl#sha256=1763a047ae734a7fae71bd79eb1d176a88b3913c3697cfdfcae92957b28852fc (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,298 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.0-cp34-cp34m-linux_armv7l.whl#sha256=1763a047ae734a7fae71bd79eb1d176a88b3913c3697cfdfcae92957b28852fc (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,299 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.10-cp34-cp34m-linux_armv6l.whl#sha256=87e83e73a28fed346080668f2a477fb08a6ca8bf3802640775026de54323b23c (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,300 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.10-cp34-cp34m-linux_armv7l.whl#sha256=87e83e73a28fed346080668f2a477fb08a6ca8bf3802640775026de54323b23c (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,300 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.10-cp35-cp35m-linux_armv6l.whl#sha256=2aa333ce8f980896690a87a06480996253427b69909920d39f0e36cfcc80f63c (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,301 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.10-cp35-cp35m-linux_armv7l.whl#sha256=2aa333ce8f980896690a87a06480996253427b69909920d39f0e36cfcc80f63c (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,301 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.9-cp35-cp35m-linux_armv7l.whl#sha256=a9d5b8d91e54f6a17c043f9b94f8fbf1671ef2895d07adb0154774d0428c9ab7 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,302 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.9-cp35-cp35m-linux_armv6l.whl#sha256=a9d5b8d91e54f6a17c043f9b94f8fbf1671ef2895d07adb0154774d0428c9ab7 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,302 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.9-cp34-cp34m-linux_armv6l.whl#sha256=3575f3ae35b6f3ac0a2361eeae3e7503b6fd3f93a38a4b49a514c5f26950970a (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,303 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.9-cp34-cp34m-linux_armv7l.whl#sha256=3575f3ae35b6f3ac0a2361eeae3e7503b6fd3f93a38a4b49a514c5f26950970a (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,303 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.8-cp35-cp35m-linux_armv6l.whl#sha256=8ae0bc12b1cd71f9d8866c5ee397347c3d4bb8eaf9c96d603cab7b9aedc54157 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,304 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.8-cp35-cp35m-linux_armv7l.whl#sha256=8ae0bc12b1cd71f9d8866c5ee397347c3d4bb8eaf9c96d603cab7b9aedc54157 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,304 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.8-cp34-cp34m-linux_armv6l.whl#sha256=94c5dc7c26654dc605f452c971f5dc9dee38169c1c5bbb16e62144e7c6161c1e (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,305 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.8-cp34-cp34m-linux_armv7l.whl#sha256=94c5dc7c26654dc605f452c971f5dc9dee38169c1c5bbb16e62144e7c6161c1e (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,305 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.7-cp34-cp34m-linux_armv6l.whl#sha256=e6f833d45535fe8386fe0fda09bca022a7da6f04721964403d287539df5d92ce (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,306 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.7-cp34-cp34m-linux_armv7l.whl#sha256=e6f833d45535fe8386fe0fda09bca022a7da6f04721964403d287539df5d92ce (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,307 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.7-cp35-cp35m-linux_armv6l.whl#sha256=32650659afa40f4f78715fb0c14b3c4d90557472919b58c66c01936bccc3bee3 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,307 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.7-cp35-cp35m-linux_armv7l.whl#sha256=32650659afa40f4f78715fb0c14b3c4d90557472919b58c66c01936bccc3bee3 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,308 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.6-cp34-cp34m-linux_armv6l.whl#sha256=c6fd88b52227c586bc801675c6035ec0cb14b6a7c83270b093f9d15f8374ac59 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,308 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.6-cp34-cp34m-linux_armv7l.whl#sha256=c6fd88b52227c586bc801675c6035ec0cb14b6a7c83270b093f9d15f8374ac59 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,308 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.6-cp35-cp35m-linux_armv6l.whl#sha256=255524aca6fa274e0c1586973432ad374dd4b7f648ba77dc3ac86eaf09fb464a (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,309 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.6-cp35-cp35m-linux_armv7l.whl#sha256=255524aca6fa274e0c1586973432ad374dd4b7f648ba77dc3ac86eaf09fb464a (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,309 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.5-cp35-cp35m-linux_armv6l.whl#sha256=980037bc7c774a4c03315f85c5a22209dc79103113d282b9dd4998a596430afa (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,310 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.5-cp35-cp35m-linux_armv7l.whl#sha256=980037bc7c774a4c03315f85c5a22209dc79103113d282b9dd4998a596430afa (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,311 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.5-cp34-cp34m-linux_armv6l.whl#sha256=f4f69611f6e31072cd229ea44ce4f5a95085886d5ed43a61bc34a7675c11dc86 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,311 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.5-cp34-cp34m-linux_armv7l.whl#sha256=f4f69611f6e31072cd229ea44ce4f5a95085886d5ed43a61bc34a7675c11dc86 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,312 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.4-cp35-cp35m-linux_armv7l.whl#sha256=21d579f8dc8be0696fe5705e2d390a6967babfed8601a444a6698e18908a54bf (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,312 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.4-cp35-cp35m-linux_armv6l.whl#sha256=21d579f8dc8be0696fe5705e2d390a6967babfed8601a444a6698e18908a54bf (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,313 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.4-cp34-cp34m-linux_armv6l.whl#sha256=0c918e20eb5fd94e0d90ca921bd2c023be4c2cdd9b8f4320a09ca791931cc2f9 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,314 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.4-cp34-cp34m-linux_armv7l.whl#sha256=0c918e20eb5fd94e0d90ca921bd2c023be4c2cdd9b8f4320a09ca791931cc2f9 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,314 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.1-cp34-cp34m-linux_armv6l.whl#sha256=0e95d8fa061476ac4d6f466d79e75d81a3da01e7f6747fc6725c1275b6201d9d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,315 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.1-cp34-cp34m-linux_armv7l.whl#sha256=0e95d8fa061476ac4d6f466d79e75d81a3da01e7f6747fc6725c1275b6201d9d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,315 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.1-cp35-cp35m-linux_armv7l.whl#sha256=da9cb927034371755a7f7294f2498d49b63a6549d77a30f3b5dc91db13be8352 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,316 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.1-cp35-cp35m-linux_armv6l.whl#sha256=da9cb927034371755a7f7294f2498d49b63a6549d77a30f3b5dc91db13be8352 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,316 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.0-cp34-cp34m-linux_armv6l.whl#sha256=1101dc6f2f0a800dec0dbddcc707d40429bf6b5dbe42842ff61bb5850a63cc6c (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,317 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.0-cp34-cp34m-linux_armv7l.whl#sha256=1101dc6f2f0a800dec0dbddcc707d40429bf6b5dbe42842ff61bb5850a63cc6c (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,318 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.0-cp35-cp35m-linux_armv7l.whl#sha256=4a8563d567bdbcc4ae26db720acf3980bc4c63af83effdb6ca5e72145e8ddc6f (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,318 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.0-cp35-cp35m-linux_armv6l.whl#sha256=4a8563d567bdbcc4ae26db720acf3980bc4c63af83effdb6ca5e72145e8ddc6f (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,319 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.2.2.dev0-py3-none-any.whl#sha256=37efef7ea02a872e8d60cd34e5a36bd3e480eaccf7121bd8ac67647dd4550efc (from https://www.piwheels.org/simple/pybedtools/) 2023-09-13T15:54:35,320 Skipping link: not a file: https://www.piwheels.org/simple/pybedtools/ 2023-09-13T15:54:35,320 Skipping link: not a file: https://pypi.org/simple/pybedtools/ 2023-09-13T15:54:35,342 Given no hashes to check 1 links for project 'pybedtools': discarding no candidates 2023-09-13T15:54:35,359 Collecting pybedtools==0.8.2 2023-09-13T15:54:35,362 Created temporary directory: /tmp/pip-unpack-bztf0l4y 2023-09-13T15:54:35,583 Downloading pybedtools-0.8.2.tar.gz (12.5 MB) 2023-09-13T15:54:39,381 Added pybedtools==0.8.2 from https://files.pythonhosted.org/packages/5b/57/46e9c8135954550d1d3a05db5b0462a264239f7f71c78af304bb47c5c900/pybedtools-0.8.2.tar.gz to build tracker '/tmp/pip-build-tracker-oyijkkij' 2023-09-13T15:54:39,383 Running setup.py (path:/tmp/pip-wheel-oyzlyvkb/pybedtools_8d9f5beeb5724026a44daa6b330f99d9/setup.py) egg_info for package pybedtools 2023-09-13T15:54:39,384 Created temporary directory: /tmp/pip-pip-egg-info-ji_t_5g5 2023-09-13T15:54:39,384 Preparing metadata (setup.py): started 2023-09-13T15:54:39,385 Running command python setup.py egg_info 2023-09-13T15:54:40,035 /tmp/pip-wheel-oyzlyvkb/pybedtools_8d9f5beeb5724026a44daa6b330f99d9/setup.py:55: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2023-09-13T15:54:40,036 import pkg_resources 2023-09-13T15:54:40,459 running egg_info 2023-09-13T15:54:40,461 creating /tmp/pip-pip-egg-info-ji_t_5g5/pybedtools.egg-info 2023-09-13T15:54:40,484 writing /tmp/pip-pip-egg-info-ji_t_5g5/pybedtools.egg-info/PKG-INFO 2023-09-13T15:54:40,487 writing dependency_links to /tmp/pip-pip-egg-info-ji_t_5g5/pybedtools.egg-info/dependency_links.txt 2023-09-13T15:54:40,489 writing requirements to /tmp/pip-pip-egg-info-ji_t_5g5/pybedtools.egg-info/requires.txt 2023-09-13T15:54:40,490 writing top-level names to /tmp/pip-pip-egg-info-ji_t_5g5/pybedtools.egg-info/top_level.txt 2023-09-13T15:54:40,491 writing manifest file '/tmp/pip-pip-egg-info-ji_t_5g5/pybedtools.egg-info/SOURCES.txt' 2023-09-13T15:54:40,557 reading manifest file '/tmp/pip-pip-egg-info-ji_t_5g5/pybedtools.egg-info/SOURCES.txt' 2023-09-13T15:54:40,559 adding license file 'LICENSE.txt' 2023-09-13T15:54:40,563 writing manifest file '/tmp/pip-pip-egg-info-ji_t_5g5/pybedtools.egg-info/SOURCES.txt' 2023-09-13T15:54:40,676 Preparing metadata (setup.py): finished with status 'done' 2023-09-13T15:54:40,680 Source in /tmp/pip-wheel-oyzlyvkb/pybedtools_8d9f5beeb5724026a44daa6b330f99d9 has version 0.8.2, which satisfies requirement pybedtools==0.8.2 from https://files.pythonhosted.org/packages/5b/57/46e9c8135954550d1d3a05db5b0462a264239f7f71c78af304bb47c5c900/pybedtools-0.8.2.tar.gz 2023-09-13T15:54:40,681 Removed pybedtools==0.8.2 from https://files.pythonhosted.org/packages/5b/57/46e9c8135954550d1d3a05db5b0462a264239f7f71c78af304bb47c5c900/pybedtools-0.8.2.tar.gz from build tracker '/tmp/pip-build-tracker-oyijkkij' 2023-09-13T15:54:40,686 Created temporary directory: /tmp/pip-unpack-qgf4s0t4 2023-09-13T15:54:40,687 Created temporary directory: /tmp/pip-unpack-43xq06sk 2023-09-13T15:54:40,692 Building wheels for collected packages: pybedtools 2023-09-13T15:54:40,696 Created temporary directory: /tmp/pip-wheel-xohmioa7 2023-09-13T15:54:40,697 Building wheel for pybedtools (setup.py): started 2023-09-13T15:54:40,698 Destination directory: /tmp/pip-wheel-xohmioa7 2023-09-13T15:54:40,698 Running command python setup.py bdist_wheel 2023-09-13T15:54:41,318 /tmp/pip-wheel-oyzlyvkb/pybedtools_8d9f5beeb5724026a44daa6b330f99d9/setup.py:55: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2023-09-13T15:54:41,318 import pkg_resources 2023-09-13T15:54:41,780 running bdist_wheel 2023-09-13T15:54:41,804 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2023-09-13T15:54:41,828 running build 2023-09-13T15:54:41,829 running build_py 2023-09-13T15:54:41,863 creating build 2023-09-13T15:54:41,864 creating build/lib.linux-armv7l-cpython-311 2023-09-13T15:54:41,866 creating build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-13T15:54:41,870 copying pybedtools/bedtool.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-13T15:54:41,916 copying pybedtools/parallel.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-13T15:54:41,920 copying pybedtools/filenames.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-13T15:54:41,924 copying pybedtools/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-13T15:54:41,927 copying pybedtools/logger.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-13T15:54:41,931 copying pybedtools/stats.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-13T15:54:41,935 copying pybedtools/genome_registry.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-13T15:54:41,944 copying pybedtools/settings.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-13T15:54:41,951 copying pybedtools/version.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-13T15:54:41,954 copying pybedtools/helpers.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-13T15:54:41,959 copying pybedtools/paths.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-13T15:54:41,964 creating build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-13T15:54:41,965 copying pybedtools/test/test_contrib.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-13T15:54:41,970 copying pybedtools/test/test_cbedtools.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-13T15:54:41,974 copying pybedtools/test/test_gzip_support.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-13T15:54:41,978 copying pybedtools/test/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-13T15:54:41,982 copying pybedtools/test/test_pathlib.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-13T15:54:41,987 copying pybedtools/test/test_1.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-13T15:54:41,990 copying pybedtools/test/regression_tests.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-13T15:54:41,992 copying pybedtools/test/test_issues.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-13T15:54:41,994 copying pybedtools/test/test_iter.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-13T15:54:41,996 copying pybedtools/test/tfuncs.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-13T15:54:41,998 copying pybedtools/test/test_helpers.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-13T15:54:42,000 copying pybedtools/test/genomepy_integration.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-13T15:54:42,001 copying pybedtools/test/test_len_leak.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-13T15:54:42,003 creating build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-13T15:54:42,004 copying pybedtools/contrib/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-13T15:54:42,006 copying pybedtools/contrib/long_range_interaction.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-13T15:54:42,008 copying pybedtools/contrib/bigwig.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-13T15:54:42,010 copying pybedtools/contrib/venn_maker.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-13T15:54:42,012 copying pybedtools/contrib/plotting.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-13T15:54:42,014 copying pybedtools/contrib/intersection_matrix.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-13T15:54:42,016 copying pybedtools/contrib/bigbed.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-13T15:54:42,019 creating build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,019 copying pybedtools/test/data/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,021 running egg_info 2023-09-13T15:54:42,051 creating pybedtools.egg-info 2023-09-13T15:54:42,078 writing pybedtools.egg-info/PKG-INFO 2023-09-13T15:54:42,081 writing dependency_links to pybedtools.egg-info/dependency_links.txt 2023-09-13T15:54:42,083 writing requirements to pybedtools.egg-info/requires.txt 2023-09-13T15:54:42,084 writing top-level names to pybedtools.egg-info/top_level.txt 2023-09-13T15:54:42,085 writing manifest file 'pybedtools.egg-info/SOURCES.txt' 2023-09-13T15:54:42,123 reading manifest file 'pybedtools.egg-info/SOURCES.txt' 2023-09-13T15:54:42,124 adding license file 'LICENSE.txt' 2023-09-13T15:54:42,129 writing manifest file 'pybedtools.egg-info/SOURCES.txt' 2023-09-13T15:54:42,132 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pybedtools.include' is absent from the `packages` configuration. 2023-09-13T15:54:42,132 !! 2023-09-13T15:54:42,133 ******************************************************************************** 2023-09-13T15:54:42,134 ############################ 2023-09-13T15:54:42,134 # Package would be ignored # 2023-09-13T15:54:42,134 ############################ 2023-09-13T15:54:42,135 Python recognizes 'pybedtools.include' as an importable package[^1], 2023-09-13T15:54:42,135 but it is absent from setuptools' `packages` configuration. 2023-09-13T15:54:42,136 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-13T15:54:42,136 package, please make sure that 'pybedtools.include' is explicitly added 2023-09-13T15:54:42,137 to the `packages` configuration field. 2023-09-13T15:54:42,137 Alternatively, you can also rely on setuptools' discovery methods 2023-09-13T15:54:42,138 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-13T15:54:42,138 instead of `find_packages(...)`/`find:`). 2023-09-13T15:54:42,139 You can read more about "package discovery" on setuptools documentation page: 2023-09-13T15:54:42,140 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-13T15:54:42,140 If you don't want 'pybedtools.include' to be distributed and are 2023-09-13T15:54:42,141 already explicitly excluding 'pybedtools.include' via 2023-09-13T15:54:42,141 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-13T15:54:42,142 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-13T15:54:42,142 combination with a more fine grained `package-data` configuration. 2023-09-13T15:54:42,143 You can read more about "package data files" on setuptools documentation page: 2023-09-13T15:54:42,144 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-13T15:54:42,146 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-13T15:54:42,147 even if it does not contain any `.py` files. 2023-09-13T15:54:42,147 On the other hand, currently there is no concept of package data 2023-09-13T15:54:42,148 directory, all directories are treated like packages. 2023-09-13T15:54:42,148 ******************************************************************************** 2023-09-13T15:54:42,149 !! 2023-09-13T15:54:42,150 check.warn(importable) 2023-09-13T15:54:42,150 copying pybedtools/_Window.pyx -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-13T15:54:42,151 copying pybedtools/cbedtools.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-13T15:54:42,169 copying pybedtools/cbedtools.pxd -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-13T15:54:42,171 copying pybedtools/cbedtools.pyx -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-13T15:54:42,174 copying pybedtools/featurefuncs.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-13T15:54:42,183 copying pybedtools/featurefuncs.pyx -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-13T15:54:42,185 creating build/lib.linux-armv7l-cpython-311/pybedtools/include 2023-09-13T15:54:42,186 copying pybedtools/include/bedFile.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools/include 2023-09-13T15:54:42,189 copying pybedtools/include/fileType.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools/include 2023-09-13T15:54:42,191 copying pybedtools/include/gzstream.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools/include 2023-09-13T15:54:42,193 copying pybedtools/test/data/gdc.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,195 copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,204 copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,205 copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,210 copying pybedtools/test/data/c.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,212 copying pybedtools/test/data/hg19.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,219 copying pybedtools/test/data/gdc.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,221 copying pybedtools/test/data/x.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,253 copying pybedtools/test/data/164.gtf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,255 copying pybedtools/test/data/x.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,302 copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,305 copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,309 copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,311 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,314 copying pybedtools/test/data/d.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,316 copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,325 copying pybedtools/test/data/m1.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,328 copying pybedtools/test/data/expand_test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,330 copying pybedtools/test/data/gdc.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,332 copying pybedtools/test/data/test.fa.fai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,334 copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,337 copying pybedtools/test/data/y.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,339 copying pybedtools/test/data/small.fastq -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,341 copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,343 copying pybedtools/test/data/venn.b.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,345 copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,348 copying pybedtools/test/data/gdc.cram -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,350 copying pybedtools/test/data/reads.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,352 copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,353 copying pybedtools/test/data/a.bed.gz.tbi -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,355 copying pybedtools/test/data/v.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,357 copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,359 copying pybedtools/test/data/issue319.vcf.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,362 copying pybedtools/test/data/a.igv_script -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,364 copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,366 copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,368 copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,370 copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,372 copying pybedtools/test/data/small.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,374 copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,375 copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,379 copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,385 copying pybedtools/test/data/genome.fa -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,387 copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,390 copying pybedtools/test/data/issue319.out.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,398 copying pybedtools/test/data/a.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,401 copying pybedtools/test/data/gdc.othersort.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,404 copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,407 copying pybedtools/test/data/1000genomes-example.vcf.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,410 copying pybedtools/test/data/issue319.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,414 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,418 copying pybedtools/test/data/test.fa -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,421 copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,424 copying pybedtools/test/data/a.links.html -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,427 copying pybedtools/test/data/test_peaks.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,430 copying pybedtools/test/data/exons.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,432 copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,435 copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,438 copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,444 copying pybedtools/test/data/bedpe.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,447 copying pybedtools/test/data/venn.c.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,451 copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,589 copying pybedtools/test/data/b.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,591 copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,593 copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,596 copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,598 copying pybedtools/test/data/a.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,600 copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,604 copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,606 copying pybedtools/test/data/issue_121.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-13T15:54:42,632 running build_ext 2023-09-13T15:54:42,638 building 'pybedtools.cbedtools' extension 2023-09-13T15:54:42,639 creating build/temp.linux-armv7l-cpython-311 2023-09-13T15:54:42,639 creating build/temp.linux-armv7l-cpython-311/pybedtools 2023-09-13T15:54:42,640 creating build/temp.linux-armv7l-cpython-311/pybedtools/include 2023-09-13T15:54:42,641 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/cbedtools.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/cbedtools.o 2023-09-13T15:54:42,948 pybedtools/cbedtools.cpp:225:12: fatal error: longintrepr.h: No such file or directory 2023-09-13T15:54:42,949 225 | #include "longintrepr.h" 2023-09-13T15:54:42,950 | ^~~~~~~~~~~~~~~ 2023-09-13T15:54:42,950 compilation terminated. 2023-09-13T15:54:42,954 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-13T15:54:43,069 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-13T15:54:43,081 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-13T15:54:43,081 exec(compile('"'"''"'"''"'"' 2023-09-13T15:54:43,081 # This is -- a caller that pip uses to run setup.py 2023-09-13T15:54:43,081 # 2023-09-13T15:54:43,081 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-13T15:54:43,081 # import from `distutils.core` to work with newer packaging standards. 2023-09-13T15:54:43,081 # - It provides a clear error message when setuptools is not installed. 2023-09-13T15:54:43,081 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-13T15:54:43,081 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-13T15:54:43,081 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-13T15:54:43,081 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-13T15:54:43,081 import os, sys, tokenize 2023-09-13T15:54:43,081 2023-09-13T15:54:43,081 try: 2023-09-13T15:54:43,081 import setuptools 2023-09-13T15:54:43,081 except ImportError as error: 2023-09-13T15:54:43,081 print( 2023-09-13T15:54:43,081 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-13T15:54:43,081 "the build environment.", 2023-09-13T15:54:43,081 file=sys.stderr, 2023-09-13T15:54:43,081 ) 2023-09-13T15:54:43,081 sys.exit(1) 2023-09-13T15:54:43,081 2023-09-13T15:54:43,081 __file__ = %r 2023-09-13T15:54:43,081 sys.argv[0] = __file__ 2023-09-13T15:54:43,081 2023-09-13T15:54:43,081 if os.path.exists(__file__): 2023-09-13T15:54:43,081 filename = __file__ 2023-09-13T15:54:43,081 with tokenize.open(__file__) as f: 2023-09-13T15:54:43,081 setup_py_code = f.read() 2023-09-13T15:54:43,081 else: 2023-09-13T15:54:43,081 filename = "" 2023-09-13T15:54:43,081 setup_py_code = "from setuptools import setup; setup()" 2023-09-13T15:54:43,081 2023-09-13T15:54:43,081 exec(compile(setup_py_code, filename, "exec")) 2023-09-13T15:54:43,081 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-oyzlyvkb/pybedtools_8d9f5beeb5724026a44daa6b330f99d9/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-xohmioa7[/] 2023-09-13T15:54:43,082 [bold magenta]cwd[/]: /tmp/pip-wheel-oyzlyvkb/pybedtools_8d9f5beeb5724026a44daa6b330f99d9/ 2023-09-13T15:54:43,083 Building wheel for pybedtools (setup.py): finished with status 'error' 2023-09-13T15:54:43,084 ERROR: Failed building wheel for pybedtools 2023-09-13T15:54:43,085 Running setup.py clean for pybedtools 2023-09-13T15:54:43,086 Running command python setup.py clean 2023-09-13T15:54:43,740 /tmp/pip-wheel-oyzlyvkb/pybedtools_8d9f5beeb5724026a44daa6b330f99d9/setup.py:55: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2023-09-13T15:54:43,740 import pkg_resources 2023-09-13T15:54:44,390 usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] 2023-09-13T15:54:44,391 or: setup.py --help [cmd1 cmd2 ...] 2023-09-13T15:54:44,392 or: setup.py --help-commands 2023-09-13T15:54:44,392 or: setup.py cmd --help 2023-09-13T15:54:44,394 error: option --all not recognized 2023-09-13T15:54:44,501 ERROR: [present-rich] python setup.py clean exited with 1 2023-09-13T15:54:44,506 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-13T15:54:44,506 exec(compile('"'"''"'"''"'"' 2023-09-13T15:54:44,506 # This is -- a caller that pip uses to run setup.py 2023-09-13T15:54:44,506 # 2023-09-13T15:54:44,506 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-13T15:54:44,506 # import from `distutils.core` to work with newer packaging standards. 2023-09-13T15:54:44,506 # - It provides a clear error message when setuptools is not installed. 2023-09-13T15:54:44,506 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-13T15:54:44,506 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-13T15:54:44,506 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-13T15:54:44,506 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-13T15:54:44,506 import os, sys, tokenize 2023-09-13T15:54:44,506 2023-09-13T15:54:44,506 try: 2023-09-13T15:54:44,506 import setuptools 2023-09-13T15:54:44,506 except ImportError as error: 2023-09-13T15:54:44,506 print( 2023-09-13T15:54:44,506 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-13T15:54:44,506 "the build environment.", 2023-09-13T15:54:44,506 file=sys.stderr, 2023-09-13T15:54:44,506 ) 2023-09-13T15:54:44,506 sys.exit(1) 2023-09-13T15:54:44,506 2023-09-13T15:54:44,506 __file__ = %r 2023-09-13T15:54:44,506 sys.argv[0] = __file__ 2023-09-13T15:54:44,506 2023-09-13T15:54:44,506 if os.path.exists(__file__): 2023-09-13T15:54:44,506 filename = __file__ 2023-09-13T15:54:44,506 with tokenize.open(__file__) as f: 2023-09-13T15:54:44,506 setup_py_code = f.read() 2023-09-13T15:54:44,506 else: 2023-09-13T15:54:44,506 filename = "" 2023-09-13T15:54:44,506 setup_py_code = "from setuptools import setup; setup()" 2023-09-13T15:54:44,506 2023-09-13T15:54:44,506 exec(compile(setup_py_code, filename, "exec")) 2023-09-13T15:54:44,506 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-oyzlyvkb/pybedtools_8d9f5beeb5724026a44daa6b330f99d9/setup.py'"'"',), "", "exec"))' clean --all[/] 2023-09-13T15:54:44,506 [bold magenta]cwd[/]: /tmp/pip-wheel-oyzlyvkb/pybedtools_8d9f5beeb5724026a44daa6b330f99d9 2023-09-13T15:54:44,507 ERROR: Failed cleaning build dir for pybedtools 2023-09-13T15:54:44,509 Failed to build pybedtools 2023-09-13T15:54:44,511 ERROR: Failed to build one or more wheels 2023-09-13T15:54:44,512 Exception information: 2023-09-13T15:54:44,512 Traceback (most recent call last): 2023-09-13T15:54:44,512 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-13T15:54:44,512 status = run_func(*args) 2023-09-13T15:54:44,512 ^^^^^^^^^^^^^^^ 2023-09-13T15:54:44,512 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-13T15:54:44,512 return func(self, options, args) 2023-09-13T15:54:44,512 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-13T15:54:44,512 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-13T15:54:44,512 raise CommandError("Failed to build one or more wheels") 2023-09-13T15:54:44,512 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-13T15:54:44,515 Removed build tracker: '/tmp/pip-build-tracker-oyijkkij'