2023-09-13T17:49:42,360 Created temporary directory: /tmp/pip-build-tracker-znswb2f1 2023-09-13T17:49:42,362 Initialized build tracking at /tmp/pip-build-tracker-znswb2f1 2023-09-13T17:49:42,362 Created build tracker: /tmp/pip-build-tracker-znswb2f1 2023-09-13T17:49:42,363 Entered build tracker: /tmp/pip-build-tracker-znswb2f1 2023-09-13T17:49:42,364 Created temporary directory: /tmp/pip-wheel-y9mcu922 2023-09-13T17:49:42,367 Created temporary directory: /tmp/pip-ephem-wheel-cache-upybi1aj 2023-09-13T17:49:42,389 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-13T17:49:42,393 2 location(s) to search for versions of openbabel-wheel: 2023-09-13T17:49:42,393 * https://pypi.org/simple/openbabel-wheel/ 2023-09-13T17:49:42,393 * https://www.piwheels.org/simple/openbabel-wheel/ 2023-09-13T17:49:42,394 Fetching project page and analyzing links: https://pypi.org/simple/openbabel-wheel/ 2023-09-13T17:49:42,395 Getting page https://pypi.org/simple/openbabel-wheel/ 2023-09-13T17:49:42,396 Found index url https://pypi.org/simple/ 2023-09-13T17:49:42,623 Fetched page https://pypi.org/simple/openbabel-wheel/ as application/vnd.pypi.simple.v1+json 2023-09-13T17:49:42,643 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/33/fa/ee31663181b121ef9aaa90f7bfafcf64afc06b07854685fa06e5cd1b96e4/openbabel_wheel-3.1.1.3-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,644 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/b3/f2/8327b76b3305de6dbb0e4bb58120d47f9e9b5bed4720d1806a310e95d080/openbabel_wheel-3.1.1.3-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,645 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/ff/d6/64ed1e9ad9cc39b40057cea9980b071c1d563d9fa22baf671429a635076e/openbabel_wheel-3.1.1.3-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,645 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/c4/86/d67f7f31e195333964147c7f5a34c4ec957cd1573ba8830b4c0d4e109346/openbabel_wheel-3.1.1.3-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,646 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/81/d3/3c7f15e68521f09a05e24301fa50f4c53b50d576b8e214dc64c763dae668/openbabel_wheel-3.1.1.4-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,647 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/22/22/eb96f734f889ccdf31be3652a7f3c39ecbda1a8e280b91188346670ff46d/openbabel_wheel-3.1.1.4-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,647 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/fe/cb/14825052ee7d746d2bae30527009222644625970644901b34eada5e3b122/openbabel_wheel-3.1.1.4-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,648 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/89/03/5695ab953075df2f5cc8af36098fa24ff03d8538049a9cb06a5c90ab7edf/openbabel_wheel-3.1.1.4-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,649 Found link https://files.pythonhosted.org/packages/92/c5/e010bb31c67383ceeaf724fe945b2cc7de1242ad9e6f673af111f760e22a/openbabel-wheel-3.1.1.5.tar.gz (from 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https://files.pythonhosted.org/packages/60/f7/07147ae684cb4dc09ddd8673d4c8d54812ff683a3021c35b558ca1059c5b/openbabel_wheel-3.1.1.5-cp39-cp39-manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,654 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/19/7f/b1ccbd6996ffe3646823a5a5a38a4aabce657142d467ee85f70d1889bda7/openbabel_wheel-3.1.1.5-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,654 Found link https://files.pythonhosted.org/packages/81/b8/2b5296b157d28563ce7c175ec9d0fad4a4e0111409bdc5489d3673b0ec9f/openbabel-wheel-3.1.1.6.tar.gz (from https://pypi.org/simple/openbabel-wheel/), version: 3.1.1.6 2023-09-13T17:49:42,655 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/a5/73/e8bf6feaa5aae7d6bbab6c13529a2114852146dae8a24538084a0638b1f1/openbabel_wheel-3.1.1.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,656 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/e1/88/40106bae3c6e3c51a72ef2b0caa98b491848597dd6efd138603a8e1baa30/openbabel_wheel-3.1.1.6-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,669 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/04/a6/0e1b410431385845fb478864ec9e7babd6689ee0159240edbf91a034b1fc/openbabel_wheel-3.1.1.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,670 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/03/db/53491ecadd92259ecd80323ea687633f7e276b22749d90f4e4630d2087c1/openbabel_wheel-3.1.1.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,671 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/31/a8/32475ff9beb3bb433b346326de200f3b7f3740b706d9d721c4eb724b7577/openbabel_wheel-3.1.1.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,672 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/76/77/9d597587e0ee0a38cad8005f71b81937f79d5ad99c4416dd0df3518e4d14/openbabel_wheel-3.1.1.7-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,672 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/d5/d4/889713329308152e46c8eb4b03ba52a5e8984f996d84fc4d3473c85a3346/openbabel_wheel-3.1.1.7-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,673 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/0a/08/c996a007025912e8742fe2d9ecf0a6266b729bc1cd11369ca5ac62c2c792/openbabel_wheel-3.1.1.7-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,674 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/d1/ca/27c68e8061300f9404023f7bc67b1ed4a93c52dc5cc15d3adff43262cd13/openbabel_wheel-3.1.1.7-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,674 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/ec/1e/746bac2352a5edf667ee13c461e71b57bf97269c8258da28899fbfc00f1a/openbabel_wheel-3.1.1.7-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,675 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/4e/b0/fd4f4ee730a03ed0f23b3c0fff5246e6fbc452ee4ef9bddcd7efdb5454ee/openbabel_wheel-3.1.1.8-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-13T17:49:42,675 Found link https://files.pythonhosted.org/packages/89/92/e71b4aed2c2c315a02b599ce257f9816b6a1729ea3618d2858598fdd99d1/openbabel-wheel-3.1.1.10.tar.gz (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7), version: 3.1.1.10 2023-09-13T17:49:42,676 Skipping link: No binaries permitted for openbabel-wheel: 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binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/ee/e4/58b46fa179d736c0d64c7e98d23623bca4bf0ccec43341b203eb07cf5e60/openbabel_wheel-3.1.1.10-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-13T17:49:42,679 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/91/88/ce2660fa8328eb39924ff5feb65fb9683c279f397e0e0546740aa7037a95/openbabel_wheel-3.1.1.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-13T17:49:42,680 Found link https://files.pythonhosted.org/packages/29/ab/49f1739755148867821cf8847a988aa203a82c2b302790e6a1bbf0d28be5/openbabel-wheel-3.1.1.11.tar.gz (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7), version: 3.1.1.11 2023-09-13T17:49:42,680 Skipping link: No binaries permitted for openbabel-wheel: 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https://files.pythonhosted.org/packages/52/64/e4e7d9586211af1da0e9b105eb1e832a238664230b2de04b8f59e76d2a87/openbabel_wheel-3.1.1.17-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-13T17:49:42,723 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/1f/96/f68a43c65f48ec9d94ebf8c9feb03a0ef623523293ff1dd4d92a2932f2a3/openbabel_wheel-3.1.1.17-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-13T17:49:42,724 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/8f/9a/e54324c912f9668bf59d7535ca941aa7da75246ec9f84133f46a30553bd3/openbabel_wheel-3.1.1.17-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-13T17:49:42,724 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/5a/ab/edca6c6f979e3e1c05282ab97b8f0bf1cdab7fa6212dff71fa5de012ac95/openbabel_wheel-3.1.1.17-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-13T17:49:42,725 Fetching project page and analyzing links: https://www.piwheels.org/simple/openbabel-wheel/ 2023-09-13T17:49:42,726 Getting page https://www.piwheels.org/simple/openbabel-wheel/ 2023-09-13T17:49:42,727 Found index url https://www.piwheels.org/simple/ 2023-09-13T17:49:42,988 Fetched page https://www.piwheels.org/simple/openbabel-wheel/ as text/html 2023-09-13T17:49:42,992 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.16-cp39-cp39-linux_armv7l.whl#sha256=64dcd364ae6edf579234a4b11bafd60b3383a6b2f4a28bf986f1348aa533159b (from https://www.piwheels.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-13T17:49:42,993 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.16-cp39-cp39-linux_armv6l.whl#sha256=64dcd364ae6edf579234a4b11bafd60b3383a6b2f4a28bf986f1348aa533159b (from https://www.piwheels.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-13T17:49:42,993 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.16-cp37-cp37m-linux_armv7l.whl#sha256=48b11d06da0f42200cd3ef56bf05c0c8e26da5c5b64f483318fac00388ee4059 (from https://www.piwheels.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-13T17:49:42,994 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.16-cp37-cp37m-linux_armv6l.whl#sha256=48b11d06da0f42200cd3ef56bf05c0c8e26da5c5b64f483318fac00388ee4059 (from https://www.piwheels.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-13T17:49:42,995 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.6-cp37-cp37m-linux_armv7l.whl#sha256=309b5a8e1c7557e216b8004b4e95f61b650be6662ddfe572f244e4236234a399 (from https://www.piwheels.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,995 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.6-cp37-cp37m-linux_armv6l.whl#sha256=309b5a8e1c7557e216b8004b4e95f61b650be6662ddfe572f244e4236234a399 (from https://www.piwheels.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,996 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.5-cp39-cp39-linux_armv7l.whl#sha256=e964a372e696d5ca62dde5671abf124b35601d8b40f03af847b30f79066876a2 (from https://www.piwheels.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,996 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.5-cp39-cp39-linux_armv6l.whl#sha256=e964a372e696d5ca62dde5671abf124b35601d8b40f03af847b30f79066876a2 (from https://www.piwheels.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,997 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.5-cp37-cp37m-linux_armv7l.whl#sha256=8a27ede797ba041ef6b2609cdac8cfdc22387b1e00760cda2f2bae2fb59f69af (from https://www.piwheels.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,997 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.5-cp37-cp37m-linux_armv6l.whl#sha256=8a27ede797ba041ef6b2609cdac8cfdc22387b1e00760cda2f2bae2fb59f69af (from https://www.piwheels.org/simple/openbabel-wheel/) 2023-09-13T17:49:42,998 Skipping link: not a file: https://www.piwheels.org/simple/openbabel-wheel/ 2023-09-13T17:49:42,998 Skipping link: not a file: https://pypi.org/simple/openbabel-wheel/ 2023-09-13T17:49:43,018 Given no hashes to check 1 links for project 'openbabel-wheel': discarding no candidates 2023-09-13T17:49:43,036 Collecting openbabel-wheel==3.1.1.5 2023-09-13T17:49:43,039 Created temporary directory: /tmp/pip-unpack-rpyuxihm 2023-09-13T17:49:43,854 Downloading openbabel-wheel-3.1.1.5.tar.gz (35.8 MB) 2023-09-13T17:50:53,362 Added openbabel-wheel==3.1.1.5 from https://files.pythonhosted.org/packages/92/c5/e010bb31c67383ceeaf724fe945b2cc7de1242ad9e6f673af111f760e22a/openbabel-wheel-3.1.1.5.tar.gz to build tracker '/tmp/pip-build-tracker-znswb2f1' 2023-09-13T17:50:53,369 Created temporary directory: /tmp/pip-build-env-0zj1sn8_ 2023-09-13T17:50:53,374 Installing build dependencies: started 2023-09-13T17:50:53,376 Running command pip subprocess to install build dependencies 2023-09-13T17:50:54,612 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-13T17:50:55,194 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-13T17:50:57,620 Collecting setuptools 2023-09-13T17:50:57,621 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-13T17:50:57,627 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-13T17:50:57,831 Collecting wheel 2023-09-13T17:50:57,847 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-13T17:50:58,084 Collecting cmake_build_extension 2023-09-13T17:50:58,099 Using cached https://www.piwheels.org/simple/cmake-build-extension/cmake_build_extension-0.5.1-py3-none-any.whl (13 kB) 2023-09-13T17:50:58,810 Collecting cmake 2023-09-13T17:50:59,813 Using cached https://www.piwheels.org/simple/cmake/cmake-3.18.4.post1-cp311-cp311-linux_armv7l.whl (14.2 MB) 2023-09-13T17:51:00,497 Collecting ninja 2023-09-13T17:51:00,514 Using cached https://www.piwheels.org/simple/ninja/ninja-1.10.0.post2-cp311-cp311-linux_armv7l.whl (102 kB) 2023-09-13T17:51:00,898 Collecting GitPython (from cmake_build_extension) 2023-09-13T17:51:00,899 Obtaining dependency information for GitPython from https://files.pythonhosted.org/packages/f9/94/1877b88fa3a0a30bedb43757a14f548c3b2719c8d83c16012f89564c0f3b/GitPython-3.1.36-py3-none-any.whl.metadata 2023-09-13T17:51:00,905 Using cached GitPython-3.1.36-py3-none-any.whl.metadata (12 kB) 2023-09-13T17:51:01,185 Collecting setuptools-scm (from cmake_build_extension) 2023-09-13T17:51:01,202 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.1.0-py3-none-any.whl (43 kB) 2023-09-13T17:51:01,346 Collecting gitdb<5,>=4.0.1 (from GitPython->cmake_build_extension) 2023-09-13T17:51:01,363 Using cached https://www.piwheels.org/simple/gitdb/gitdb-4.0.10-py3-none-any.whl (62 kB) 2023-09-13T17:51:01,672 Collecting packaging>=20.0 (from setuptools-scm->cmake_build_extension) 2023-09-13T17:51:01,689 Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB) 2023-09-13T17:51:01,799 Collecting typing-extensions (from setuptools-scm->cmake_build_extension) 2023-09-13T17:51:01,815 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.7.1-py3-none-any.whl (33 kB) 2023-09-13T17:51:01,904 Collecting smmap<6,>=3.0.1 (from gitdb<5,>=4.0.1->GitPython->cmake_build_extension) 2023-09-13T17:51:01,918 Using cached https://www.piwheels.org/simple/smmap/smmap-5.0.0-py3-none-any.whl (24 kB) 2023-09-13T17:51:01,959 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-13T17:51:01,982 Using cached GitPython-3.1.36-py3-none-any.whl (189 kB) 2023-09-13T17:51:04,538 Installing collected packages: ninja, cmake, wheel, typing-extensions, smmap, setuptools, packaging, setuptools-scm, gitdb, GitPython, cmake_build_extension 2023-09-13T17:51:04,585 Creating /tmp/pip-build-env-0zj1sn8_/overlay/local/bin 2023-09-13T17:51:04,587 changing mode of /tmp/pip-build-env-0zj1sn8_/overlay/local/bin/ninja to 755 2023-09-13T17:51:09,145 changing mode of /tmp/pip-build-env-0zj1sn8_/overlay/local/bin/cmake to 755 2023-09-13T17:51:09,147 changing mode of /tmp/pip-build-env-0zj1sn8_/overlay/local/bin/cpack to 755 2023-09-13T17:51:09,149 changing mode of /tmp/pip-build-env-0zj1sn8_/overlay/local/bin/ctest to 755 2023-09-13T17:51:09,419 changing mode of /tmp/pip-build-env-0zj1sn8_/overlay/local/bin/wheel to 755 2023-09-13T17:51:12,944 Successfully installed GitPython-3.1.36 cmake-3.18.4.post1 cmake_build_extension-0.5.1 gitdb-4.0.10 ninja-1.10.0.post2 packaging-23.1 setuptools-68.2.2 setuptools-scm-7.1.0 smmap-5.0.0 typing-extensions-4.7.1 wheel-0.41.2 2023-09-13T17:51:13,631 Installing build dependencies: finished with status 'done' 2023-09-13T17:51:13,643 Getting requirements to build wheel: started 2023-09-13T17:51:13,644 Running command Getting requirements to build wheel 2023-09-13T17:51:14,220 running egg_info 2023-09-13T17:51:14,230 writing openbabel_wheel.egg-info/PKG-INFO 2023-09-13T17:51:14,233 writing dependency_links to openbabel_wheel.egg-info/dependency_links.txt 2023-09-13T17:51:14,235 writing top-level names to openbabel_wheel.egg-info/top_level.txt 2023-09-13T17:51:14,288 listing git files failed - pretending there aren't any 2023-09-13T17:51:14,292 reading manifest file 'openbabel_wheel.egg-info/SOURCES.txt' 2023-09-13T17:51:19,973 adding license file 'COPYING' 2023-09-13T17:51:19,974 adding license file 'AUTHORS' 2023-09-13T17:51:23,978 writing manifest file 'openbabel_wheel.egg-info/SOURCES.txt' 2023-09-13T17:51:24,106 Getting requirements to build wheel: finished with status 'done' 2023-09-13T17:51:24,121 Created temporary directory: /tmp/pip-modern-metadata-3de1rtlt 2023-09-13T17:51:24,124 Preparing metadata (pyproject.toml): started 2023-09-13T17:51:24,125 Running command Preparing metadata (pyproject.toml) 2023-09-13T17:51:24,676 running dist_info 2023-09-13T17:51:24,697 creating /tmp/pip-modern-metadata-3de1rtlt/openbabel_wheel.egg-info 2023-09-13T17:51:24,704 writing /tmp/pip-modern-metadata-3de1rtlt/openbabel_wheel.egg-info/PKG-INFO 2023-09-13T17:51:24,707 writing dependency_links to /tmp/pip-modern-metadata-3de1rtlt/openbabel_wheel.egg-info/dependency_links.txt 2023-09-13T17:51:24,709 writing top-level names to /tmp/pip-modern-metadata-3de1rtlt/openbabel_wheel.egg-info/top_level.txt 2023-09-13T17:51:24,711 writing manifest file '/tmp/pip-modern-metadata-3de1rtlt/openbabel_wheel.egg-info/SOURCES.txt' 2023-09-13T17:51:24,758 listing git files failed - pretending there aren't any 2023-09-13T17:51:24,761 reading manifest file '/tmp/pip-modern-metadata-3de1rtlt/openbabel_wheel.egg-info/SOURCES.txt' 2023-09-13T17:51:24,763 adding license file 'COPYING' 2023-09-13T17:51:24,763 adding license file 'AUTHORS' 2023-09-13T17:51:24,765 writing manifest file '/tmp/pip-modern-metadata-3de1rtlt/openbabel_wheel.egg-info/SOURCES.txt' 2023-09-13T17:51:24,766 creating '/tmp/pip-modern-metadata-3de1rtlt/openbabel_wheel-3.1.1.5.dist-info' 2023-09-13T17:51:24,952 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-13T17:51:24,957 Source in /tmp/pip-wheel-y9mcu922/openbabel-wheel_3af9dde34383406984ff9db5d1f7ff2b has version 3.1.1.5, which satisfies requirement openbabel-wheel==3.1.1.5 from https://files.pythonhosted.org/packages/92/c5/e010bb31c67383ceeaf724fe945b2cc7de1242ad9e6f673af111f760e22a/openbabel-wheel-3.1.1.5.tar.gz 2023-09-13T17:51:24,958 Removed openbabel-wheel==3.1.1.5 from https://files.pythonhosted.org/packages/92/c5/e010bb31c67383ceeaf724fe945b2cc7de1242ad9e6f673af111f760e22a/openbabel-wheel-3.1.1.5.tar.gz from build tracker '/tmp/pip-build-tracker-znswb2f1' 2023-09-13T17:51:24,962 Created temporary directory: /tmp/pip-unpack-lr3jzlyu 2023-09-13T17:51:24,963 Created temporary directory: /tmp/pip-unpack-u9y7ovfv 2023-09-13T17:51:24,966 Building wheels for collected packages: openbabel-wheel 2023-09-13T17:51:24,970 Created temporary directory: /tmp/pip-wheel-68qql7du 2023-09-13T17:51:24,971 Destination directory: /tmp/pip-wheel-68qql7du 2023-09-13T17:51:24,973 Building wheel for openbabel-wheel (pyproject.toml): started 2023-09-13T17:51:24,974 Running command Building wheel for openbabel-wheel (pyproject.toml) 2023-09-13T17:51:25,549 running bdist_wheel 2023-09-13T17:51:25,585 running build 2023-09-13T17:51:25,586 running build_py 2023-09-13T17:51:25,596 running build_ext 2023-09-13T17:51:26,105 -- The C compiler identification is GNU 12.2.0 2023-09-13T17:51:26,397 -- The CXX compiler identification is GNU 12.2.0 2023-09-13T17:51:26,433 -- Detecting C compiler ABI info 2023-09-13T17:51:27,350 -- Detecting C compiler ABI info - done 2023-09-13T17:51:27,415 -- Check for working C compiler: /usr/bin/cc - skipped 2023-09-13T17:51:27,417 -- Detecting C compile features 2023-09-13T17:51:27,420 -- Detecting C compile features - done 2023-09-13T17:51:27,441 -- Detecting CXX compiler ABI info 2023-09-13T17:51:28,395 -- Detecting CXX compiler ABI info - done 2023-09-13T17:51:28,441 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-09-13T17:51:28,443 -- Detecting CXX compile features 2023-09-13T17:51:28,445 -- Detecting CXX compile features - done 2023-09-13T17:51:28,452 CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): 2023-09-13T17:51:28,452 The OLD behavior for policy CMP0042 will be removed from a future version 2023-09-13T17:51:28,453 of CMake. 2023-09-13T17:51:28,454 The cmake-policies(7) manual explains that the OLD behaviors of all 2023-09-13T17:51:28,454 policies are deprecated and that a policy should be set to OLD only under 2023-09-13T17:51:28,455 specific short-term circumstances. Projects should be ported to the NEW 2023-09-13T17:51:28,455 behavior and not rely on setting a policy to OLD. 2023-09-13T17:51:28,457 -- Using included inchi library. 2023-09-13T17:51:28,595 -- Found LibXml2: /usr/lib/arm-linux-gnueabihf/libxml2.so (found version "2.9.14") 2023-09-13T17:51:28,633 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13") 2023-09-13T17:51:28,650 -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) 2023-09-13T17:51:28,664 -- Looking for conio.h 2023-09-13T17:51:29,453 -- Looking for conio.h - not found 2023-09-13T17:51:29,457 -- Looking for sys/time.h 2023-09-13T17:51:30,381 -- Looking for sys/time.h - found 2023-09-13T17:51:30,385 -- Looking for time.h 2023-09-13T17:51:31,302 -- Looking for time.h - found 2023-09-13T17:51:31,305 -- Looking for strings.h 2023-09-13T17:51:32,222 -- Looking for strings.h - found 2023-09-13T17:51:32,226 -- Looking for rpc/xdr.h 2023-09-13T17:51:33,026 -- Looking for rpc/xdr.h - not found 2023-09-13T17:51:33,031 -- Looking for regex.h 2023-09-13T17:51:33,953 -- Looking for regex.h - found 2023-09-13T17:51:33,958 -- Looking for C++ include sstream 2023-09-13T17:51:36,027 -- Looking for C++ include sstream - found 2023-09-13T17:51:36,032 -- Looking for rint 2023-09-13T17:51:36,987 -- Looking for rint - not found 2023-09-13T17:51:36,991 -- Looking for snprintf 2023-09-13T17:51:37,923 -- Looking for snprintf - found 2023-09-13T17:51:37,927 -- Looking for sranddev 2023-09-13T17:51:38,756 -- Looking for sranddev - not found 2023-09-13T17:51:38,761 -- Looking for strcasecmp 2023-09-13T17:51:39,685 -- Looking for strcasecmp - found 2023-09-13T17:51:39,690 -- Looking for strncasecmp 2023-09-13T17:51:40,580 -- Looking for strncasecmp - found 2023-09-13T17:51:40,581 -- Looking for dlopen in dl 2023-09-13T17:51:41,483 -- Looking for dlopen in dl - found 2023-09-13T17:51:41,487 -- Looking for sys/types.h 2023-09-13T17:51:42,385 -- Looking for sys/types.h - found 2023-09-13T17:51:42,389 -- Looking for stdint.h 2023-09-13T17:51:43,319 -- Looking for stdint.h - found 2023-09-13T17:51:43,322 -- Looking for stddef.h 2023-09-13T17:51:44,230 -- Looking for stddef.h - found 2023-09-13T17:51:44,231 -- Check size of clock_t 2023-09-13T17:51:45,154 -- Check size of clock_t - done 2023-09-13T17:51:45,156 -- Performing Test SCANDIR_NEEDS_CONST 2023-09-13T17:51:45,948 -- Performing Test SCANDIR_NEEDS_CONST - Failed 2023-09-13T17:51:45,953 -- Performing Test HAVE_GCC_VISIBILITY 2023-09-13T17:51:46,908 -- Performing Test HAVE_GCC_VISIBILITY - Success 2023-09-13T17:51:46,918 -- Checking available shared pointer... 2023-09-13T17:51:46,920 -- Performing Test HAVE_STD_SHARED_PTR 2023-09-13T17:51:48,532 -- Performing Test HAVE_STD_SHARED_PTR - Success 2023-09-13T17:51:48,534 -- Performing Test HAVE_STD_TR1_SHARED_PTR 2023-09-13T17:51:50,042 -- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed 2023-09-13T17:51:50,044 -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER 2023-09-13T17:51:51,812 -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success 2023-09-13T17:51:51,813 -- Use std::shared_ptr in memory 2023-09-13T17:51:52,084 -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) 2023-09-13T17:51:52,115 -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") 2023-09-13T17:51:52,324 -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) 2023-09-13T17:51:52,327 -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. 2023-09-13T17:51:52,327 -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. 2023-09-13T17:51:52,340 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") 2023-09-13T17:51:52,443 -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") 2023-09-13T17:51:53,670 -- Downloaded RapidJSON to /tmp/pip-wheel-y9mcu922/openbabel-wheel_3af9dde34383406984ff9db5d1f7ff2b/external/rapidjson-1.1.0. 2023-09-13T17:51:53,671 -- JSON formats will be supported. Using RapidJSON 1.1.0 at /tmp/pip-wheel-y9mcu922/openbabel-wheel_3af9dde34383406984ff9db5d1f7ff2b/external/rapidjson-1.1.0/include 2023-09-13T17:51:53,689 -- Checking for module 'cairo' 2023-09-13T17:51:53,731 -- Found cairo, version 1.16.0 2023-09-13T17:51:53,896 -- Found Cairo: /usr/lib/arm-linux-gnueabihf/libcairo.so 2023-09-13T17:51:53,897 -- Cairo found. PNG output will be supported. 2023-09-13T17:51:54,060 -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") 2023-09-13T17:51:54,073 -- Looking for pthread.h 2023-09-13T17:51:55,029 -- Looking for pthread.h - found 2023-09-13T17:51:55,032 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD 2023-09-13T17:51:55,994 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success 2023-09-13T17:51:55,999 -- Found Threads: TRUE 2023-09-13T17:51:56,262 -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) 2023-09-13T17:51:56,266 -- Looking for getopt 2023-09-13T17:51:57,185 -- Looking for getopt - found 2023-09-13T17:51:57,192 -- Attempting to build the GUI 2023-09-13T17:51:57,193 -- wxWidgets not found => GUI will not be built 2023-09-13T17:51:57,334 -- Found PythonInterp: /usr/bin/python3 (found version "3.11.2") 2023-09-13T17:51:57,481 -- Found SWIG: /usr/bin/swig4.0 (found version "4.1.0") 2023-09-13T17:51:57,514 -- Found SWIG: /usr/bin/swig4.0 (found suitable version "4.1.0", minimum required is "2.0") 2023-09-13T17:51:57,634 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.11.so (found version "3.11.2") 2023-09-13T17:51:57,635 -- Python bindings will be compiled 2023-09-13T17:51:58,167 -- Configuring done 2023-09-13T17:51:59,565 -- Generating done 2023-09-13T17:51:59,736 -- Build files have been written to: /tmp/pip-wheel-y9mcu922/openbabel-wheel_3af9dde34383406984ff9db5d1f7ff2b/build/temp.linux-armv7l-cpython-311_OpenBabel 2023-09-13T17:52:04,737 [1/533] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o 2023-09-13T17:52:04,738 In file included from ../../include/openbabel/chargemodel.h:24, 2023-09-13T17:52:04,738 from ../../src/charges/gasteiger.cpp:20: 2023-09-13T17:52:04,739 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:52:04,740 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:52:04,741 | ^~~~~~~~~~~~~~~ 2023-09-13T17:52:04,742 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:52:04,743 from ../../include/openbabel/dlhandler.h:24, 2023-09-13T17:52:04,744 from ../../include/openbabel/plugin.h:23: 2023-09-13T17:52:04,745 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:52:04,746 131 | struct binary_function 2023-09-13T17:52:04,747 | ^~~~~~~~~~~~~~~ 2023-09-13T17:52:05,966 [2/533] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o 2023-09-13T17:52:05,967 In file included from ../../include/openbabel/chargemodel.h:24, 2023-09-13T17:52:05,968 from ../../src/charges/none.cpp:21: 2023-09-13T17:52:05,969 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:52:05,970 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:52:05,971 | ^~~~~~~~~~~~~~~ 2023-09-13T17:52:05,971 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:52:05,972 from ../../include/openbabel/dlhandler.h:24, 2023-09-13T17:52:05,973 from ../../include/openbabel/plugin.h:23: 2023-09-13T17:52:05,974 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:52:05,975 131 | struct binary_function 2023-09-13T17:52:05,976 | ^~~~~~~~~~~~~~~ 2023-09-13T17:52:10,400 [3/533] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o 2023-09-13T17:52:10,401 In file included from ../../include/openbabel/chargemodel.h:24, 2023-09-13T17:52:10,402 from ../../src/charges/fromfile.cpp:21: 2023-09-13T17:52:10,403 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:52:10,404 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:52:10,405 | ^~~~~~~~~~~~~~~ 2023-09-13T17:52:10,406 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:52:10,407 from ../../include/openbabel/dlhandler.h:24, 2023-09-13T17:52:10,407 from ../../include/openbabel/plugin.h:23: 2023-09-13T17:52:10,409 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:52:10,409 131 | struct binary_function 2023-09-13T17:52:10,410 | ^~~~~~~~~~~~~~~ 2023-09-13T17:52:10,411 In file included from /usr/include/c++/12/map:60, 2023-09-13T17:52:10,412 from ../../include/openbabel/plugin.h:27: 2023-09-13T17:52:10,413 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2023-09-13T17:52:10,414 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2023-09-13T17:52:10,415 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2023-09-13T17:52:10,416 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:10,417 In file included from /usr/include/c++/12/map:61: 2023-09-13T17:52:10,418 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]’, 2023-09-13T17:52:10,419 inlined from ‘virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)’ at ../../src/charges/fromfile.cpp:118:32: 2023-09-13T17:52:10,421 /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2023-09-13T17:52:10,421 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2023-09-13T17:52:10,422 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:10,423 531 | std::forward_as_tuple(std::move(__k)), 2023-09-13T17:52:10,424 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:10,425 532 | std::tuple<>()); 2023-09-13T17:52:10,426 | ~~~~~~~~~~~~~~~ 2023-09-13T17:52:10,440 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]’, 2023-09-13T17:52:10,442 inlined from ‘virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)’ at ../../src/charges/fromfile.cpp:126:32: 2023-09-13T17:52:10,443 /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2023-09-13T17:52:10,444 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2023-09-13T17:52:10,445 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:10,446 531 | std::forward_as_tuple(std::move(__k)), 2023-09-13T17:52:10,447 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:10,448 532 | std::tuple<>()); 2023-09-13T17:52:10,449 | ~~~~~~~~~~~~~~~ 2023-09-13T17:52:10,450 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]’, 2023-09-13T17:52:10,451 inlined from ‘virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)’ at ../../src/charges/fromfile.cpp:134:32: 2023-09-13T17:52:10,452 /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2023-09-13T17:52:10,453 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2023-09-13T17:52:10,454 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:10,455 531 | std::forward_as_tuple(std::move(__k)), 2023-09-13T17:52:10,457 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:10,457 532 | std::tuple<>()); 2023-09-13T17:52:10,458 | ~~~~~~~~~~~~~~~ 2023-09-13T17:52:11,517 [4/533] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o 2023-09-13T17:52:11,518 In file included from ../../include/openbabel/chargemodel.h:24, 2023-09-13T17:52:11,519 from ../../src/charges/mmff94.cpp:20: 2023-09-13T17:52:11,520 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:52:11,521 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:52:11,522 | ^~~~~~~~~~~~~~~ 2023-09-13T17:52:11,523 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:52:11,524 from ../../include/openbabel/dlhandler.h:24, 2023-09-13T17:52:11,525 from ../../include/openbabel/plugin.h:23: 2023-09-13T17:52:11,526 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:52:11,526 131 | struct binary_function 2023-09-13T17:52:11,527 | ^~~~~~~~~~~~~~~ 2023-09-13T17:52:11,528 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:52:11,529 from ../../include/openbabel/dlhandler.h:25: 2023-09-13T17:52:11,530 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:52:11,531 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:52:11,532 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:52:11,533 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:11,534 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:11,535 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:11,536 inlined from ‘virtual bool OpenBabel::MMFF94Charges::ComputeCharges(OpenBabel::OBMol&)’ at ../../src/charges/mmff94.cpp:72:33: 2023-09-13T17:52:11,538 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:11,539 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:11,540 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:11,541 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:11,542 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:11,542 inlined from ‘virtual bool OpenBabel::MMFF94Charges::ComputeCharges(OpenBabel::OBMol&)’ at ../../src/charges/mmff94.cpp:73:32: 2023-09-13T17:52:11,543 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:11,545 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:11,546 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:11,917 [5/533] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o 2023-09-13T17:52:11,917 In file included from ../../include/openbabel/chargemodel.h:24, 2023-09-13T17:52:11,918 from ../../src/charges/eem.cpp:24: 2023-09-13T17:52:11,919 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:52:11,920 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:52:11,921 | ^~~~~~~~~~~~~~~ 2023-09-13T17:52:11,922 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:52:11,923 from ../../src/charges/eem.cpp:19: 2023-09-13T17:52:11,924 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:52:11,925 131 | struct binary_function 2023-09-13T17:52:11,926 | ^~~~~~~~~~~~~~~ 2023-09-13T17:52:11,926 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:52:11,927 from ../../src/charges/eem.cpp:20: 2023-09-13T17:52:11,928 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::EEMParameter&}; _Tp = OpenBabel::EEMParameter; _Alloc = std::allocator]’: 2023-09-13T17:52:11,929 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:52:11,930 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:52:11,931 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:11,932 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:52:11,933 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::EEMParameter; _Alloc = std::allocator]’, 2023-09-13T17:52:11,933 inlined from ‘void OpenBabel::EEMCharges::_loadParameters()’ at ../../src/charges/eem.cpp:114:28: 2023-09-13T17:52:11,935 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:11,936 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:11,937 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:39,196 [6/533] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o 2023-09-13T17:52:39,196 In file included from ../../include/openbabel/forcefield.h:28, 2023-09-13T17:52:39,198 from ../../src/forcefields/forcefieldghemical.h:23, 2023-09-13T17:52:39,198 from ../../src/forcefields/forcefieldghemical.cpp:23: 2023-09-13T17:52:39,199 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:52:39,200 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:52:39,201 | ^~~~~~~~~~~~~~~ 2023-09-13T17:52:39,202 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-13T17:52:39,203 from /usr/include/c++/12/vector:66, 2023-09-13T17:52:39,204 from ../../include/openbabel/mol.h:44, 2023-09-13T17:52:39,205 from ../../src/forcefields/forcefieldghemical.cpp:20: 2023-09-13T17:52:39,206 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:52:39,207 131 | struct binary_function 2023-09-13T17:52:39,208 | ^~~~~~~~~~~~~~~ 2023-09-13T17:52:39,209 In file included from /usr/include/c++/12/vector:70: 2023-09-13T17:52:39,210 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationGhemical&}; _Tp = OpenBabel::OBFFBondCalculationGhemical; _Alloc = std::allocator]’: 2023-09-13T17:52:39,211 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:52:39,212 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:52:39,213 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:39,213 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationGhemical&}; _Tp = OpenBabel::OBFFAngleCalculationGhemical; _Alloc = std::allocator]’: 2023-09-13T17:52:39,214 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:52:39,215 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationGhemical&}; _Tp = OpenBabel::OBFFTorsionCalculationGhemical; _Alloc = std::allocator]’: 2023-09-13T17:52:39,215 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:52:39,216 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:52:39,217 /usr/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationGhemical; _Alloc = std::allocator]’: 2023-09-13T17:52:39,218 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:39,219 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:39,220 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:39,221 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationGhemical&}; _Tp = OpenBabel::OBFFVDWCalculationGhemical; _Alloc = std::allocator]’: 2023-09-13T17:52:39,222 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:52:39,224 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:52:39,225 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:39,225 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationGhemical&}; _Tp = OpenBabel::OBFFElectrostaticCalculationGhemical; _Alloc = std::allocator]’: 2023-09-13T17:52:39,226 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:52:39,227 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFBondCalculationGhemical; _Alloc = std::allocator]’, 2023-09-13T17:52:39,228 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at ../../src/forcefields/forcefieldghemical.cpp:477:40: 2023-09-13T17:52:39,230 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:39,231 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:39,231 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:39,232 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFBondCalculationGhemical; _Alloc = std::allocator]’, 2023-09-13T17:52:39,233 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at ../../src/forcefields/forcefieldghemical.cpp:492:34: 2023-09-13T17:52:39,233 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:39,234 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:39,235 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:39,235 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationGhemical; _Alloc = std::allocator]’, 2023-09-13T17:52:39,236 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at ../../src/forcefields/forcefieldghemical.cpp:542:43: 2023-09-13T17:52:39,237 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:39,237 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:39,238 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:39,239 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationGhemical; _Alloc = std::allocator]’, 2023-09-13T17:52:39,240 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at ../../src/forcefields/forcefieldghemical.cpp:558:35: 2023-09-13T17:52:39,241 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:39,242 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:39,243 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:39,244 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationGhemical; _Alloc = std::allocator]’, 2023-09-13T17:52:39,245 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at ../../src/forcefields/forcefieldghemical.cpp:674:37: 2023-09-13T17:52:39,246 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:39,247 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:39,248 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:39,249 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFVDWCalculationGhemical; _Alloc = std::allocator]’, 2023-09-13T17:52:39,250 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at ../../src/forcefields/forcefieldghemical.cpp:778:33: 2023-09-13T17:52:39,252 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:39,252 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:39,253 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:39,254 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFElectrostaticCalculationGhemical; _Alloc = std::allocator]’, 2023-09-13T17:52:39,254 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at ../../src/forcefields/forcefieldghemical.cpp:829:45: 2023-09-13T17:52:39,255 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:39,256 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:39,270 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:39,271 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:52:39,272 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:52:39,272 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:52:39,273 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:39,274 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:39,275 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:39,275 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::ParseParamFile()’ at ../../src/forcefields/forcefieldghemical.cpp:877:34: 2023-09-13T17:52:39,276 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:39,277 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:39,278 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:39,279 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:39,280 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:39,281 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::ParseParamFile()’ at ../../src/forcefields/forcefieldghemical.cpp:878:34: 2023-09-13T17:52:39,282 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:39,283 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:39,284 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:39,285 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:39,286 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:39,287 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::ParseParamFile()’ at ../../src/forcefields/forcefieldghemical.cpp:895:34: 2023-09-13T17:52:39,288 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:39,289 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:39,290 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:39,291 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:39,292 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:39,292 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::ParseParamFile()’ at ../../src/forcefields/forcefieldghemical.cpp:896:34: 2023-09-13T17:52:39,293 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:39,294 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:39,295 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:39,295 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:39,296 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:39,297 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::ParseParamFile()’ at ../../src/forcefields/forcefieldghemical.cpp:927:34: 2023-09-13T17:52:39,298 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:39,299 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:39,300 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:39,301 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:39,302 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:39,303 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::ParseParamFile()’ at ../../src/forcefields/forcefieldghemical.cpp:928:34: 2023-09-13T17:52:39,304 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:39,304 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:39,305 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:39,306 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:39,307 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:39,308 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::ParseParamFile()’ at ../../src/forcefields/forcefieldghemical.cpp:940:34: 2023-09-13T17:52:39,309 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:39,310 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:39,311 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,702 [7/533] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o 2023-09-13T17:52:45,703 In file included from ../../include/openbabel/forcefield.h:28, 2023-09-13T17:52:45,703 from ../../src/forcefields/forcefieldgaff.h:24, 2023-09-13T17:52:45,704 from ../../src/forcefields/forcefieldgaff.cpp:29: 2023-09-13T17:52:45,705 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:52:45,706 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:52:45,707 | ^~~~~~~~~~~~~~~ 2023-09-13T17:52:45,708 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-13T17:52:45,708 from /usr/include/c++/12/vector:66, 2023-09-13T17:52:45,709 from ../../include/openbabel/mol.h:44, 2023-09-13T17:52:45,710 from ../../src/forcefields/forcefieldgaff.cpp:21: 2023-09-13T17:52:45,711 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:52:45,712 131 | struct binary_function 2023-09-13T17:52:45,713 | ^~~~~~~~~~~~~~~ 2023-09-13T17:52:45,714 In file included from /usr/include/c++/12/vector:70: 2023-09-13T17:52:45,715 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationGaff&}; _Tp = OpenBabel::OBFFBondCalculationGaff; _Alloc = std::allocator]’: 2023-09-13T17:52:45,716 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:52:45,716 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:52:45,717 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,718 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationGaff&}; _Tp = OpenBabel::OBFFAngleCalculationGaff; _Alloc = std::allocator]’: 2023-09-13T17:52:45,720 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:52:45,721 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationGaff&}; _Tp = OpenBabel::OBFFTorsionCalculationGaff; _Alloc = std::allocator]’: 2023-09-13T17:52:45,722 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:52:45,723 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:52:45,724 /usr/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationGaff; _Alloc = std::allocator]’: 2023-09-13T17:52:45,725 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,726 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:45,727 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:45,728 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFOOPCalculationGaff&}; _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’: 2023-09-13T17:52:45,729 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:52:45,730 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:52:45,731 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,732 /usr/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’: 2023-09-13T17:52:45,733 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,733 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:45,734 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:45,735 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationGaff&}; _Tp = OpenBabel::OBFFVDWCalculationGaff; _Alloc = std::allocator]’: 2023-09-13T17:52:45,750 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:52:45,751 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:52:45,752 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,753 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationGaff&}; _Tp = OpenBabel::OBFFElectrostaticCalculationGaff; _Alloc = std::allocator]’: 2023-09-13T17:52:45,754 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:52:45,755 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFBondCalculationGaff; _Alloc = std::allocator]’, 2023-09-13T17:52:45,757 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at ../../src/forcefields/forcefieldgaff.cpp:572:40: 2023-09-13T17:52:45,758 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,759 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:45,760 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:45,761 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFBondCalculationGaff; _Alloc = std::allocator]’, 2023-09-13T17:52:45,762 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at ../../src/forcefields/forcefieldgaff.cpp:587:34: 2023-09-13T17:52:45,763 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,764 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:45,765 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:45,766 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationGaff; _Alloc = std::allocator]’, 2023-09-13T17:52:45,767 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at ../../src/forcefields/forcefieldgaff.cpp:637:43: 2023-09-13T17:52:45,768 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,769 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:45,770 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:45,771 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationGaff; _Alloc = std::allocator]’, 2023-09-13T17:52:45,771 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at ../../src/forcefields/forcefieldgaff.cpp:653:35: 2023-09-13T17:52:45,772 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,773 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:45,774 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:45,775 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationGaff; _Alloc = std::allocator]’, 2023-09-13T17:52:45,777 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at ../../src/forcefields/forcefieldgaff.cpp:724:37: 2023-09-13T17:52:45,777 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,778 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:45,779 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:45,780 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’, 2023-09-13T17:52:45,781 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at ../../src/forcefields/forcefieldgaff.cpp:785:28: 2023-09-13T17:52:45,782 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,783 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:45,784 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:45,785 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’, 2023-09-13T17:52:45,786 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at ../../src/forcefields/forcefieldgaff.cpp:799:28: 2023-09-13T17:52:45,787 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,788 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:45,790 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:45,791 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’, 2023-09-13T17:52:45,792 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at ../../src/forcefields/forcefieldgaff.cpp:813:28: 2023-09-13T17:52:45,792 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,793 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:45,794 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:45,795 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’, 2023-09-13T17:52:45,796 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at ../../src/forcefields/forcefieldgaff.cpp:827:28: 2023-09-13T17:52:45,797 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,798 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:45,798 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:45,810 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’, 2023-09-13T17:52:45,811 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at ../../src/forcefields/forcefieldgaff.cpp:841:28: 2023-09-13T17:52:45,812 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,813 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:45,814 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:45,815 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’, 2023-09-13T17:52:45,817 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at ../../src/forcefields/forcefieldgaff.cpp:855:28: 2023-09-13T17:52:45,817 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,819 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:45,820 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:45,821 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFVDWCalculationGaff; _Alloc = std::allocator]’, 2023-09-13T17:52:45,822 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at ../../src/forcefields/forcefieldgaff.cpp:1003:33: 2023-09-13T17:52:45,823 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,824 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:45,825 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:45,826 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFElectrostaticCalculationGaff; _Alloc = std::allocator]’, 2023-09-13T17:52:45,827 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at ../../src/forcefields/forcefieldgaff.cpp:1054:45: 2023-09-13T17:52:45,828 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,829 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:52:45,830 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:52:45,830 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:52:45,831 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:52:45,832 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:52:45,833 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,834 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:45,835 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:45,835 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at ../../src/forcefields/forcefieldgaff.cpp:1099:34: 2023-09-13T17:52:45,836 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,837 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:45,838 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,839 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:45,840 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:45,841 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at ../../src/forcefields/forcefieldgaff.cpp:1100:34: 2023-09-13T17:52:45,842 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,843 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:45,844 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,845 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:45,846 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:45,847 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at ../../src/forcefields/forcefieldgaff.cpp:1112:34: 2023-09-13T17:52:45,848 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,849 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:45,850 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,852 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:45,853 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:45,854 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at ../../src/forcefields/forcefieldgaff.cpp:1113:34: 2023-09-13T17:52:45,855 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,855 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:45,856 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,857 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:45,858 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:45,858 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at ../../src/forcefields/forcefieldgaff.cpp:1125:34: 2023-09-13T17:52:45,859 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,860 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:45,861 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,862 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:45,863 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:45,864 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at ../../src/forcefields/forcefieldgaff.cpp:1126:34: 2023-09-13T17:52:45,865 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,880 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:45,881 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,882 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:45,883 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:45,884 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at ../../src/forcefields/forcefieldgaff.cpp:1142:34: 2023-09-13T17:52:45,885 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,886 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:45,887 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,888 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:45,890 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:45,891 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at ../../src/forcefields/forcefieldgaff.cpp:1143:34: 2023-09-13T17:52:45,892 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,893 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:45,894 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,895 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:45,896 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:45,896 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at ../../src/forcefields/forcefieldgaff.cpp:1144:34: 2023-09-13T17:52:45,897 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,898 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:45,899 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,900 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:45,901 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:45,902 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at ../../src/forcefields/forcefieldgaff.cpp:1169:34: 2023-09-13T17:52:45,903 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,904 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:45,905 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,906 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:45,907 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:45,908 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at ../../src/forcefields/forcefieldgaff.cpp:1170:34: 2023-09-13T17:52:45,909 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,910 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:45,911 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,912 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:45,913 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:45,914 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at ../../src/forcefields/forcefieldgaff.cpp:1171:34: 2023-09-13T17:52:45,915 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,916 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:45,917 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,918 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:45,918 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:45,919 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at ../../src/forcefields/forcefieldgaff.cpp:1182:34: 2023-09-13T17:52:45,920 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,921 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:45,922 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,930 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:45,931 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:45,932 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at ../../src/forcefields/forcefieldgaff.cpp:1183:34: 2023-09-13T17:52:45,933 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,934 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:45,935 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,936 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:45,937 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:45,938 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at ../../src/forcefields/forcefieldgaff.cpp:1201:34: 2023-09-13T17:52:45,940 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,941 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:45,942 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:45,943 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:45,944 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:45,945 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at ../../src/forcefields/forcefieldgaff.cpp:1202:34: 2023-09-13T17:52:45,945 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:45,946 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:45,947 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:51,649 [8/533] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o 2023-09-13T17:52:51,650 In file included from ../../include/openbabel/chargemodel.h:24, 2023-09-13T17:52:51,651 from ../../src/charges/eqeq.h:22, 2023-09-13T17:52:51,652 from ../../src/charges/eqeq.cpp:21: 2023-09-13T17:52:51,652 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:52:51,653 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:52:51,654 | ^~~~~~~~~~~~~~~ 2023-09-13T17:52:51,655 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:52:51,656 from ../../include/openbabel/dlhandler.h:24, 2023-09-13T17:52:51,657 from ../../include/openbabel/plugin.h:23: 2023-09-13T17:52:51,657 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:52:51,658 131 | struct binary_function 2023-09-13T17:52:51,659 | ^~~~~~~~~~~~~~~ 2023-09-13T17:52:51,660 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:52:51,661 from ../../include/openbabel/dlhandler.h:25: 2023-09-13T17:52:51,662 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:52:51,662 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:52:51,663 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:52:51,664 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:51,665 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:51,670 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:51,680 inlined from ‘virtual bool OpenBabel::EQEqCharges::ComputeCharges(OpenBabel::OBMol&)’ at ../../src/charges/eqeq.cpp:200:33: 2023-09-13T17:52:51,681 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:51,682 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:51,683 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:51,684 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:52:51,685 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:52:51,686 inlined from ‘virtual bool OpenBabel::EQEqCharges::ComputeCharges(OpenBabel::OBMol&)’ at ../../src/charges/eqeq.cpp:201:32: 2023-09-13T17:52:51,687 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:52:51,688 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:52:51,689 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:52:55,715 [9/533] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o 2023-09-13T17:52:55,717 In file included from ../../include/openbabel/fingerprint.h:28, 2023-09-13T17:52:55,718 from ../../src/fingerprints/finger2.cpp:24: 2023-09-13T17:52:55,719 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:52:55,720 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:52:55,721 | ^~~~~~~~~~~~~~~ 2023-09-13T17:52:55,722 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:52:55,723 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:52:55,724 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:52:55,725 from /usr/include/c++/12/ios:42, 2023-09-13T17:52:55,726 from /usr/include/c++/12/istream:38, 2023-09-13T17:52:55,726 from /usr/include/c++/12/sstream:38, 2023-09-13T17:52:55,727 from ../../include/openbabel/oberror.h:26, 2023-09-13T17:52:55,728 from ../../src/fingerprints/finger2.cpp:20: 2023-09-13T17:52:55,729 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:52:55,730 131 | struct binary_function 2023-09-13T17:52:55,731 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:02,920 [10/533] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o 2023-09-13T17:53:02,921 In file included from ../../include/openbabel/fingerprint.h:28, 2023-09-13T17:53:02,922 from ../../src/fingerprints/finger3.cpp:27: 2023-09-13T17:53:02,923 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:02,924 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:02,925 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:02,926 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-13T17:53:02,927 from /usr/include/c++/12/vector:66, 2023-09-13T17:53:02,928 from ../../include/openbabel/mol.h:44, 2023-09-13T17:53:02,929 from ../../src/fingerprints/finger3.cpp:19: 2023-09-13T17:53:02,930 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:02,931 131 | struct binary_function 2023-09-13T17:53:02,932 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:04,628 [11/533] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o 2023-09-13T17:53:04,629 In file included from ../../include/openbabel/fingerprint.h:28, 2023-09-13T17:53:04,630 from ../../src/fingerprints/fingerecfp.cpp:20: 2023-09-13T17:53:04,631 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:04,632 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:04,633 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:04,634 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:04,635 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:53:04,636 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:53:04,638 from /usr/include/c++/12/ios:42, 2023-09-13T17:53:04,639 from /usr/include/c++/12/istream:38, 2023-09-13T17:53:04,640 from /usr/include/c++/12/sstream:38, 2023-09-13T17:53:04,641 from ../../include/openbabel/oberror.h:26, 2023-09-13T17:53:04,642 from ../../src/fingerprints/fingerecfp.cpp:15: 2023-09-13T17:53:04,643 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:04,644 131 | struct binary_function 2023-09-13T17:53:04,645 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:06,985 [12/533] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o 2023-09-13T17:53:06,986 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:53:06,987 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:53:06,988 from ../../src/forcefields/forcefieldmmff94.cpp:31: 2023-09-13T17:53:06,989 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:06,990 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:06,991 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:06,992 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:06,993 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:53:06,994 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:53:06,995 from /usr/include/c++/12/ios:42, 2023-09-13T17:53:06,996 from /usr/include/c++/12/ostream:38, 2023-09-13T17:53:06,997 from /usr/include/c++/12/iostream:39, 2023-09-13T17:53:06,997 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:53:06,998 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:06,999 131 | struct binary_function 2023-09-13T17:53:07,000 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:07,001 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:53:07,002 from ../../include/openbabel/obconversion.h:30: 2023-09-13T17:53:07,003 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationMMFF94&}; _Tp = OpenBabel::OBFFBondCalculationMMFF94; _Alloc = std::allocator]’: 2023-09-13T17:53:07,004 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:07,005 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:53:07,007 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,008 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationMMFF94&}; _Tp = OpenBabel::OBFFAngleCalculationMMFF94; _Alloc = std::allocator]’: 2023-09-13T17:53:07,009 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:07,010 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFStrBndCalculationMMFF94&}; _Tp = OpenBabel::OBFFStrBndCalculationMMFF94; _Alloc = std::allocator]’: 2023-09-13T17:53:07,011 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:07,012 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationMMFF94&}; _Tp = OpenBabel::OBFFTorsionCalculationMMFF94; _Alloc = std::allocator]’: 2023-09-13T17:53:07,013 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:07,015 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFOOPCalculationMMFF94&}; _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator]’: 2023-09-13T17:53:07,016 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:07,020 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationMMFF94&}; _Tp = OpenBabel::OBFFVDWCalculationMMFF94; _Alloc = std::allocator]’: 2023-09-13T17:53:07,021 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:07,022 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationMMFF94&}; _Tp = OpenBabel::OBFFElectrostaticCalculationMMFF94; _Alloc = std::allocator]’: 2023-09-13T17:53:07,023 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:07,025 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:53:07,026 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFBondCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-13T17:53:07,026 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at ../../src/forcefields/forcefieldmmff94.cpp:2765:38: 2023-09-13T17:53:07,027 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,028 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:07,029 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:07,040 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFBondCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-13T17:53:07,041 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at ../../src/forcefields/forcefieldmmff94.cpp:2775:36: 2023-09-13T17:53:07,042 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,043 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:07,044 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:07,045 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-13T17:53:07,046 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at ../../src/forcefields/forcefieldmmff94.cpp:2931:35: 2023-09-13T17:53:07,047 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,048 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:07,050 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:07,050 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFStrBndCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-13T17:53:07,051 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at ../../src/forcefields/forcefieldmmff94.cpp:3074:36: 2023-09-13T17:53:07,052 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,053 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:07,054 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:07,055 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-13T17:53:07,056 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at ../../src/forcefields/forcefieldmmff94.cpp:3350:37: 2023-09-13T17:53:07,056 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,057 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:07,058 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:07,059 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-13T17:53:07,060 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at ../../src/forcefields/forcefieldmmff94.cpp:3429:41: 2023-09-13T17:53:07,061 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,061 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:07,062 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:07,063 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-13T17:53:07,064 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at ../../src/forcefields/forcefieldmmff94.cpp:3436:41: 2023-09-13T17:53:07,065 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,066 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:07,067 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:07,068 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-13T17:53:07,069 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at ../../src/forcefields/forcefieldmmff94.cpp:3444:41: 2023-09-13T17:53:07,070 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,071 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:07,072 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:07,072 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-13T17:53:07,073 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at ../../src/forcefields/forcefieldmmff94.cpp:3458:41: 2023-09-13T17:53:07,074 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,075 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:07,075 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:07,076 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-13T17:53:07,077 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at ../../src/forcefields/forcefieldmmff94.cpp:3465:41: 2023-09-13T17:53:07,078 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,079 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:07,080 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:07,081 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-13T17:53:07,081 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at ../../src/forcefields/forcefieldmmff94.cpp:3473:41: 2023-09-13T17:53:07,082 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,083 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:07,084 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:07,085 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFVDWCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-13T17:53:07,085 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at ../../src/forcefields/forcefieldmmff94.cpp:3609:33: 2023-09-13T17:53:07,087 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,087 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:07,088 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:07,089 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFElectrostaticCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-13T17:53:07,090 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at ../../src/forcefields/forcefieldmmff94.cpp:3671:45: 2023-09-13T17:53:07,091 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,092 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:07,093 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:07,094 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:53:07,095 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:07,096 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:53:07,097 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,097 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,098 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,099 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamPbci(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:1270:32: 2023-09-13T17:53:07,100 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,100 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,101 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,102 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,103 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,104 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamPbci(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:1271:32: 2023-09-13T17:53:07,104 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,105 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,106 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,107 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,108 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,109 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamCharge(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:1238:32: 2023-09-13T17:53:07,110 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,111 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,112 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,113 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,114 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,115 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamBndk(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:982:32: 2023-09-13T17:53:07,115 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,116 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,118 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,118 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,119 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,120 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamBndk(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:983:32: 2023-09-13T17:53:07,121 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,121 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,122 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,123 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,124 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,124 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamOOP(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:1125:32: 2023-09-13T17:53:07,125 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,126 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,127 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,128 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,129 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,130 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamDfsb(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:1089:32: 2023-09-13T17:53:07,131 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,132 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,132 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,133 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,134 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,135 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamDfsb(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:1090:32: 2023-09-13T17:53:07,136 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,137 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,138 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,139 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,140 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,141 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamBond(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:948:32: 2023-09-13T17:53:07,141 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,142 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,142 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,143 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,144 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,144 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamBond(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:949:32: 2023-09-13T17:53:07,145 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,146 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,146 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,147 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,148 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,148 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamAngle(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:1018:32: 2023-09-13T17:53:07,149 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,150 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,151 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,152 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,153 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,154 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamAngle(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:1019:32: 2023-09-13T17:53:07,155 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,156 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,157 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,158 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,159 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,160 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamStrBnd(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:1054:32: 2023-09-13T17:53:07,161 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,161 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,162 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,163 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,164 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,164 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamStrBnd(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:1055:32: 2023-09-13T17:53:07,165 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,166 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,167 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,167 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,168 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,169 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamVDW(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:1195:32: 2023-09-13T17:53:07,170 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,171 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,172 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,173 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,174 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,175 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamVDW(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:1196:32: 2023-09-13T17:53:07,176 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,177 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,178 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,179 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,180 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,181 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamVDW(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:1197:32: 2023-09-13T17:53:07,182 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,183 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,184 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,184 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,185 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,185 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamVDW(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:1198:32: 2023-09-13T17:53:07,186 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,187 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,188 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,188 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,189 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,190 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamTorsion(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:1161:32: 2023-09-13T17:53:07,191 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,192 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,193 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,194 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,195 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,196 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamTorsion(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:1162:32: 2023-09-13T17:53:07,197 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,198 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,199 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,199 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,200 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,201 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamTorsion(std::string&)’ at ../../src/forcefields/forcefieldmmff94.cpp:1163:32: 2023-09-13T17:53:07,202 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,203 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,204 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,205 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,206 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,207 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at ../../src/forcefields/forcefieldmmff94.cpp:4100:31: 2023-09-13T17:53:07,207 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,208 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,209 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,210 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,211 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,212 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at ../../src/forcefields/forcefieldmmff94.cpp:4101:31: 2023-09-13T17:53:07,212 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,213 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,214 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,215 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,216 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,217 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at ../../src/forcefields/forcefieldmmff94.cpp:4102:31: 2023-09-13T17:53:07,218 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,219 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,220 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,221 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,222 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,222 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at ../../src/forcefields/forcefieldmmff94.cpp:4103:31: 2023-09-13T17:53:07,223 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,224 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,225 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,226 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,227 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,228 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at ../../src/forcefields/forcefieldmmff94.cpp:4106:33: 2023-09-13T17:53:07,229 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,230 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,231 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,231 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,232 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,233 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at ../../src/forcefields/forcefieldmmff94.cpp:4108:33: 2023-09-13T17:53:07,234 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,235 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,236 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,237 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,237 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,238 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at ../../src/forcefields/forcefieldmmff94.cpp:4110:33: 2023-09-13T17:53:07,240 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,241 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,241 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,242 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,243 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,244 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at ../../src/forcefields/forcefieldmmff94.cpp:4119:31: 2023-09-13T17:53:07,245 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,246 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,247 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,248 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,249 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,249 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at ../../src/forcefields/forcefieldmmff94.cpp:4120:31: 2023-09-13T17:53:07,251 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,251 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,252 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,253 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,254 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,255 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at ../../src/forcefields/forcefieldmmff94.cpp:4121:31: 2023-09-13T17:53:07,256 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,256 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,257 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,258 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,259 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,260 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at ../../src/forcefields/forcefieldmmff94.cpp:4122:31: 2023-09-13T17:53:07,261 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,262 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,263 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,264 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,264 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,265 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at ../../src/forcefields/forcefieldmmff94.cpp:4125:33: 2023-09-13T17:53:07,267 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,268 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,269 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,270 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,270 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,271 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at ../../src/forcefields/forcefieldmmff94.cpp:4127:33: 2023-09-13T17:53:07,272 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,273 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,275 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,275 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,276 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,277 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at ../../src/forcefields/forcefieldmmff94.cpp:4129:33: 2023-09-13T17:53:07,278 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,279 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,279 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:07,280 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:07,281 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:07,282 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at ../../src/forcefields/forcefieldmmff94.cpp:4150:33: 2023-09-13T17:53:07,283 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:07,283 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:07,284 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:08,622 [13/533] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o 2023-09-13T17:53:08,622 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:53:08,623 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:53:08,624 from ../../src/descriptors/cansmidescriptor.cpp:22: 2023-09-13T17:53:08,625 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:08,626 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:08,627 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:08,628 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:08,629 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:53:08,630 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:53:08,631 from /usr/include/c++/12/ios:42, 2023-09-13T17:53:08,632 from /usr/include/c++/12/istream:38, 2023-09-13T17:53:08,632 from /usr/include/c++/12/sstream:38, 2023-09-13T17:53:08,633 from ../../include/openbabel/oberror.h:26, 2023-09-13T17:53:08,634 from ../../src/descriptors/cansmidescriptor.cpp:20: 2023-09-13T17:53:08,635 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:08,636 131 | struct binary_function 2023-09-13T17:53:08,637 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:11,056 [14/533] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o 2023-09-13T17:53:11,057 In file included from ../../include/openbabel/descriptor.h:27, 2023-09-13T17:53:11,058 from ../../src/descriptors/cmpdfilter.cpp:21: 2023-09-13T17:53:11,058 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:11,059 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:11,060 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:11,061 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:11,062 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:53:11,062 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:53:11,063 from /usr/include/c++/12/ios:42, 2023-09-13T17:53:11,064 from /usr/include/c++/12/istream:38, 2023-09-13T17:53:11,065 from /usr/include/c++/12/sstream:38, 2023-09-13T17:53:11,066 from ../../include/openbabel/oberror.h:26, 2023-09-13T17:53:11,067 from ../../src/descriptors/cmpdfilter.cpp:20: 2023-09-13T17:53:11,068 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:11,069 131 | struct binary_function 2023-09-13T17:53:11,070 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:15,006 [15/533] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o 2023-09-13T17:53:15,006 In file included from ../../include/openbabel/descriptor.h:27, 2023-09-13T17:53:15,007 from ../../src/descriptors/filters.cpp:20: 2023-09-13T17:53:15,008 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:15,009 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:15,010 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:15,011 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:15,012 from ../../include/openbabel/descriptor.h:22: 2023-09-13T17:53:15,013 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:15,014 131 | struct binary_function 2023-09-13T17:53:15,015 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:15,486 [16/533] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o 2023-09-13T17:53:15,487 In file included from ../../include/openbabel/forcefield.h:28, 2023-09-13T17:53:15,488 from ../../src/forcefields/forcefielduff.h:24, 2023-09-13T17:53:15,489 from ../../src/forcefields/forcefielduff.cpp:32: 2023-09-13T17:53:15,500 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:15,501 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:15,502 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:15,503 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-13T17:53:15,504 from /usr/include/c++/12/vector:66, 2023-09-13T17:53:15,505 from ../../include/openbabel/mol.h:44, 2023-09-13T17:53:15,506 from ../../src/forcefields/forcefielduff.cpp:21: 2023-09-13T17:53:15,507 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:15,509 131 | struct binary_function 2023-09-13T17:53:15,510 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:15,511 In file included from /usr/include/c++/12/vector:70: 2023-09-13T17:53:15,512 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationUFF&}; _Tp = OpenBabel::OBFFBondCalculationUFF; _Alloc = std::allocator]’: 2023-09-13T17:53:15,513 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:15,514 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:53:15,515 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:15,516 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationUFF&}; _Tp = OpenBabel::OBFFVDWCalculationUFF; _Alloc = std::allocator]’: 2023-09-13T17:53:15,517 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:15,518 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationUFF&}; _Tp = OpenBabel::OBFFAngleCalculationUFF; _Alloc = std::allocator]’: 2023-09-13T17:53:15,530 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:15,540 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationUFF&}; _Tp = OpenBabel::OBFFTorsionCalculationUFF; _Alloc = std::allocator]’: 2023-09-13T17:53:15,541 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:15,542 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFOOPCalculationUFF&}; _Tp = OpenBabel::OBFFOOPCalculationUFF; _Alloc = std::allocator]’: 2023-09-13T17:53:15,543 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:15,544 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:53:15,545 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFBondCalculationUFF; _Alloc = std::allocator]’, 2023-09-13T17:53:15,546 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()’ at ../../src/forcefields/forcefielduff.cpp:969:34: 2023-09-13T17:53:15,547 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,548 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:15,549 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:15,550 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFVDWCalculationUFF; _Alloc = std::allocator]’, 2023-09-13T17:53:15,551 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()’ at ../../src/forcefields/forcefielduff.cpp:1038:37: 2023-09-13T17:53:15,552 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,553 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:15,554 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:15,555 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationUFF; _Alloc = std::allocator]’, 2023-09-13T17:53:15,556 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()’ at ../../src/forcefields/forcefielduff.cpp:1186:35: 2023-09-13T17:53:15,557 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,558 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:15,559 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:15,560 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationUFF; _Alloc = std::allocator]’, 2023-09-13T17:53:15,561 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()’ at ../../src/forcefields/forcefielduff.cpp:1332:37: 2023-09-13T17:53:15,570 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,580 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:15,581 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:15,582 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationUFF; _Alloc = std::allocator]’, 2023-09-13T17:53:15,583 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()’ at ../../src/forcefields/forcefielduff.cpp:1454:33: 2023-09-13T17:53:15,584 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,585 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:15,586 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:15,587 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationUFF; _Alloc = std::allocator]’, 2023-09-13T17:53:15,588 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()’ at ../../src/forcefields/forcefielduff.cpp:1461:33: 2023-09-13T17:53:15,589 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,590 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:15,591 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:15,593 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationUFF; _Alloc = std::allocator]’, 2023-09-13T17:53:15,593 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()’ at ../../src/forcefields/forcefielduff.cpp:1469:33: 2023-09-13T17:53:15,594 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,595 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:15,597 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:15,598 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFVDWCalculationUFF; _Alloc = std::allocator]’, 2023-09-13T17:53:15,599 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()’ at ../../src/forcefields/forcefielduff.cpp:1513:35: 2023-09-13T17:53:15,600 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,610 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:15,620 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:15,621 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationUFF&}; _Tp = OpenBabel::OBFFElectrostaticCalculationUFF; _Alloc = std::allocator]’: 2023-09-13T17:53:15,622 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:15,623 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:53:15,624 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:15,625 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFElectrostaticCalculationUFF; _Alloc = std::allocator]’, 2023-09-13T17:53:15,626 inlined from ‘bool OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at ../../src/forcefields/forcefielduff.cpp:1585:45: 2023-09-13T17:53:15,627 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,627 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:15,628 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:15,630 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:53:15,631 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:15,632 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:53:15,633 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:15,634 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:15,635 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:15,636 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at ../../src/forcefields/forcefielduff.cpp:1635:34: 2023-09-13T17:53:15,637 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,638 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:15,639 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:15,640 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:15,650 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:15,660 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at ../../src/forcefields/forcefielduff.cpp:1636:34: 2023-09-13T17:53:15,661 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,662 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:15,663 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:15,664 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:15,665 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:15,666 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at ../../src/forcefields/forcefielduff.cpp:1637:34: 2023-09-13T17:53:15,667 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,668 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:15,669 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:15,670 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:15,671 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:15,672 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at ../../src/forcefields/forcefielduff.cpp:1638:34: 2023-09-13T17:53:15,673 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,674 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:15,674 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:15,675 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:15,676 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:15,680 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at ../../src/forcefields/forcefielduff.cpp:1639:34: 2023-09-13T17:53:15,690 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,691 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:15,692 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:15,693 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:15,694 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:15,695 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at ../../src/forcefields/forcefielduff.cpp:1640:34: 2023-09-13T17:53:15,696 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,697 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:15,698 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:15,699 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:15,700 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:15,701 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at ../../src/forcefields/forcefielduff.cpp:1641:34: 2023-09-13T17:53:15,702 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,703 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:15,704 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:15,705 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:15,710 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:15,711 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at ../../src/forcefields/forcefielduff.cpp:1642:34: 2023-09-13T17:53:15,712 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,713 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:15,714 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:15,715 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:15,716 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:15,717 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at ../../src/forcefields/forcefielduff.cpp:1643:34: 2023-09-13T17:53:15,718 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,719 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:15,720 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:15,721 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:15,722 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:15,723 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at ../../src/forcefields/forcefielduff.cpp:1644:34: 2023-09-13T17:53:15,724 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,725 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:15,726 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:15,727 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:15,729 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:15,729 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at ../../src/forcefields/forcefielduff.cpp:1645:34: 2023-09-13T17:53:15,730 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:15,731 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:15,732 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:17,337 [17/533] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o 2023-09-13T17:53:17,338 In file included from ../../include/openbabel/descriptor.h:27, 2023-09-13T17:53:17,339 from ../../include/openbabel/groupcontrib.h:27, 2023-09-13T17:53:17,340 from ../../src/descriptors/groupcontrib.cpp:33: 2023-09-13T17:53:17,341 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:17,343 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:17,344 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:17,345 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-13T17:53:17,346 from /usr/include/c++/12/vector:66, 2023-09-13T17:53:17,347 from ../../src/descriptors/groupcontrib.cpp:25: 2023-09-13T17:53:17,348 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:17,349 131 | struct binary_function 2023-09-13T17:53:17,350 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:17,351 In file included from /usr/include/c++/12/vector:70: 2023-09-13T17:53:17,352 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: 2023-09-13T17:53:17,353 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-13T17:53:17,354 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:53:17,355 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:17,357 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-13T17:53:17,358 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:17,359 inlined from ‘bool OpenBabel::OBGroupContrib::ParseFile()’ at ../../src/descriptors/groupcontrib.cpp:88:35: 2023-09-13T17:53:17,360 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:17,361 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:17,362 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:17,363 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-13T17:53:17,364 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:17,365 inlined from ‘bool OpenBabel::OBGroupContrib::ParseFile()’ at ../../src/descriptors/groupcontrib.cpp:90:38: 2023-09-13T17:53:17,366 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:17,367 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:17,367 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:18,833 [18/533] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o 2023-09-13T17:53:18,834 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:53:18,835 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:53:18,835 from ../../src/descriptors/inchidescriptor.cpp:22: 2023-09-13T17:53:18,836 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:18,837 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:18,838 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:18,839 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:18,840 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:53:18,841 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:53:18,842 from /usr/include/c++/12/ios:42, 2023-09-13T17:53:18,843 from /usr/include/c++/12/istream:38, 2023-09-13T17:53:18,844 from /usr/include/c++/12/sstream:38, 2023-09-13T17:53:18,845 from ../../include/openbabel/oberror.h:26, 2023-09-13T17:53:18,846 from ../../src/descriptors/inchidescriptor.cpp:20: 2023-09-13T17:53:18,847 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:18,848 131 | struct binary_function 2023-09-13T17:53:18,849 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:18,851 In file included from ../../src/descriptors/inchidescriptor.cpp:24: 2023-09-13T17:53:18,852 ../../include/openbabel/inchiformat.h:134:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:18,853 134 | : public std::binary_function 2023-09-13T17:53:18,854 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:18,855 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:18,856 131 | struct binary_function 2023-09-13T17:53:18,857 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:20,963 [19/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o 2023-09-13T17:53:20,964 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:20,965 from ../../src/ops/addfilename.cpp:20: 2023-09-13T17:53:20,966 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:20,967 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:20,968 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:20,969 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:20,970 from ../../src/ops/addfilename.cpp:18: 2023-09-13T17:53:20,971 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:20,972 131 | struct binary_function 2023-09-13T17:53:20,973 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:22,388 [20/533] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o 2023-09-13T17:53:22,389 In file included from ../../include/openbabel/descriptor.h:27, 2023-09-13T17:53:22,390 from ../../src/descriptors/smartsdescriptors.cpp:22: 2023-09-13T17:53:22,391 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:22,391 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:22,392 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:22,393 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:22,394 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:53:22,395 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:53:22,396 from /usr/include/c++/12/ios:42, 2023-09-13T17:53:22,397 from /usr/include/c++/12/istream:38, 2023-09-13T17:53:22,398 from /usr/include/c++/12/sstream:38, 2023-09-13T17:53:22,399 from ../../include/openbabel/oberror.h:26, 2023-09-13T17:53:22,400 from ../../src/descriptors/smartsdescriptors.cpp:20: 2023-09-13T17:53:22,400 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:22,401 131 | struct binary_function 2023-09-13T17:53:22,402 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:22,523 [21/533] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o 2023-09-13T17:53:22,524 In file included from ../../include/openbabel/chargemodel.h:24, 2023-09-13T17:53:22,525 from ../../src/charges/qtpie.h:22, 2023-09-13T17:53:22,526 from ../../src/charges/qtpie.cpp:21: 2023-09-13T17:53:22,527 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:22,528 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:22,532 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:22,533 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:22,534 from ../../include/openbabel/dlhandler.h:24, 2023-09-13T17:53:22,535 from ../../include/openbabel/plugin.h:23: 2023-09-13T17:53:22,536 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:22,537 131 | struct binary_function 2023-09-13T17:53:22,538 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:22,539 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:53:22,540 from ../../include/openbabel/dlhandler.h:25: 2023-09-13T17:53:22,541 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2023-09-13T17:53:22,542 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-13T17:53:22,543 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:53:22,545 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:22,546 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:53:22,547 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2023-09-13T17:53:22,548 inlined from ‘void OpenBabel::QTPIECharges::ParseParamFile()’ at ../../src/charges/qtpie.cpp:147:28: 2023-09-13T17:53:22,549 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:22,550 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:22,560 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:22,570 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:53:22,571 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:22,572 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:53:22,573 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:22,574 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:53:22,575 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:22,576 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:22,577 inlined from ‘virtual bool OpenBabel::QTPIECharges::ComputeCharges(OpenBabel::OBMol&)’ at ../../src/charges/qtpie.cpp:336:35: 2023-09-13T17:53:22,578 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:22,579 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:22,580 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:22,581 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:22,582 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:22,584 inlined from ‘virtual bool OpenBabel::QTPIECharges::ComputeCharges(OpenBabel::OBMol&)’ at ../../src/charges/qtpie.cpp:337:34: 2023-09-13T17:53:22,585 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:22,586 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:22,587 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:23,756 [22/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o 2023-09-13T17:53:23,757 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:23,758 from ../../src/ops/addpolarh.cpp:20: 2023-09-13T17:53:23,759 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:23,760 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:23,762 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:23,763 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:23,763 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:53:23,764 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:53:23,766 from /usr/include/c++/12/ios:42, 2023-09-13T17:53:23,766 from /usr/include/c++/12/ostream:38, 2023-09-13T17:53:23,767 from /usr/include/c++/12/iostream:39, 2023-09-13T17:53:23,768 from ../../src/ops/addpolarh.cpp:19: 2023-09-13T17:53:23,769 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:23,770 131 | struct binary_function 2023-09-13T17:53:23,771 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:23,919 [23/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o 2023-09-13T17:53:23,921 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:23,921 from ../../src/ops/addinindex.cpp:21: 2023-09-13T17:53:23,923 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:23,924 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:23,924 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:23,925 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-13T17:53:23,926 from /usr/include/c++/12/vector:66, 2023-09-13T17:53:23,927 from ../../include/openbabel/base.h:25, 2023-09-13T17:53:23,928 from ../../src/ops/addinindex.cpp:19: 2023-09-13T17:53:23,929 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:23,930 131 | struct binary_function 2023-09-13T17:53:23,931 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:28,216 [24/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o 2023-09-13T17:53:28,216 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:28,217 from ../../src/ops/addnonpolarh.cpp:20: 2023-09-13T17:53:28,218 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:28,219 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:28,220 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:28,222 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:28,223 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:53:28,224 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:53:28,225 from /usr/include/c++/12/ios:42, 2023-09-13T17:53:28,226 from /usr/include/c++/12/ostream:38, 2023-09-13T17:53:28,227 from /usr/include/c++/12/iostream:39, 2023-09-13T17:53:28,228 from ../../src/ops/addnonpolarh.cpp:19: 2023-09-13T17:53:28,229 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:28,229 131 | struct binary_function 2023-09-13T17:53:28,230 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:28,792 [25/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o 2023-09-13T17:53:28,793 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:28,794 from ../../src/ops/delpolarh.cpp:20: 2023-09-13T17:53:28,795 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:28,796 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:28,797 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:28,798 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:28,799 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:53:28,800 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:53:28,801 from /usr/include/c++/12/ios:42, 2023-09-13T17:53:28,801 from /usr/include/c++/12/ostream:38, 2023-09-13T17:53:28,802 from /usr/include/c++/12/iostream:39, 2023-09-13T17:53:28,803 from ../../src/ops/delpolarh.cpp:19: 2023-09-13T17:53:28,804 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:28,805 131 | struct binary_function 2023-09-13T17:53:28,806 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:28,815 [26/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o 2023-09-13T17:53:28,816 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:28,816 from ../../src/ops/delnonpolarh.cpp:20: 2023-09-13T17:53:28,817 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:28,818 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:28,819 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:28,820 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:28,821 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:53:28,822 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:53:28,823 from /usr/include/c++/12/ios:42, 2023-09-13T17:53:28,823 from /usr/include/c++/12/ostream:38, 2023-09-13T17:53:28,825 from /usr/include/c++/12/iostream:39, 2023-09-13T17:53:28,826 from ../../src/ops/delnonpolarh.cpp:19: 2023-09-13T17:53:28,826 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:28,827 131 | struct binary_function 2023-09-13T17:53:28,828 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:28,867 [27/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o 2023-09-13T17:53:28,868 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:28,869 from ../../src/ops/canonical.cpp:19: 2023-09-13T17:53:28,870 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:28,871 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:28,872 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:28,873 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:28,874 from ../../include/openbabel/op.h:23: 2023-09-13T17:53:28,875 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:28,876 131 | struct binary_function 2023-09-13T17:53:28,877 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:29,740 [28/533] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o 2023-09-13T17:53:29,741 In file included from ../../include/openbabel/chargemodel.h:24, 2023-09-13T17:53:29,742 from ../../src/charges/qeq.h:22, 2023-09-13T17:53:29,743 from ../../src/charges/qeq.cpp:21: 2023-09-13T17:53:29,744 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:29,746 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:29,747 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:29,748 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:29,748 from ../../include/openbabel/dlhandler.h:24, 2023-09-13T17:53:29,749 from ../../include/openbabel/plugin.h:23: 2023-09-13T17:53:29,750 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:29,751 131 | struct binary_function 2023-09-13T17:53:29,752 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:29,753 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:53:29,754 from ../../include/openbabel/dlhandler.h:25: 2023-09-13T17:53:29,755 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2023-09-13T17:53:29,756 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-13T17:53:29,757 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:53:29,758 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:29,759 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:53:29,761 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2023-09-13T17:53:29,761 inlined from ‘void OpenBabel::QEqCharges::ParseParamFile()’ at ../../src/charges/qeq.cpp:155:28: 2023-09-13T17:53:29,762 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:29,764 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:29,765 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:29,770 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:53:29,772 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:29,773 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:53:29,774 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:29,775 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:53:29,776 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:29,777 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:29,778 inlined from ‘virtual bool OpenBabel::QEqCharges::ComputeCharges(OpenBabel::OBMol&)’ at ../../src/charges/qeq.cpp:291:35: 2023-09-13T17:53:29,779 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:29,781 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:53:29,782 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:53:29,785 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:53:29,787 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:29,788 inlined from ‘virtual bool OpenBabel::QEqCharges::ComputeCharges(OpenBabel::OBMol&)’ at ../../src/charges/qeq.cpp:292:34: 2023-09-13T17:53:29,789 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:29,789 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:29,794 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:33,647 [29/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o 2023-09-13T17:53:33,648 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:33,649 from ../../src/ops/gen2D.cpp:22: 2023-09-13T17:53:33,650 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:33,651 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:33,652 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:33,652 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:33,653 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:53:33,654 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:53:33,655 from /usr/include/c++/12/ios:42, 2023-09-13T17:53:33,656 from /usr/include/c++/12/ostream:38, 2023-09-13T17:53:33,658 from /usr/include/c++/12/iostream:39, 2023-09-13T17:53:33,659 from ../../src/ops/gen2D.cpp:21: 2023-09-13T17:53:33,661 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:33,662 131 | struct binary_function 2023-09-13T17:53:33,663 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:34,580 [30/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o 2023-09-13T17:53:34,581 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:34,582 from ../../src/ops/changecell.cpp:20: 2023-09-13T17:53:34,583 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:34,585 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:34,586 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:34,586 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:34,587 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:53:34,588 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:53:34,589 from /usr/include/c++/12/ios:42, 2023-09-13T17:53:34,590 from /usr/include/c++/12/ostream:38, 2023-09-13T17:53:34,591 from /usr/include/c++/12/iostream:39, 2023-09-13T17:53:34,592 from ../../src/ops/changecell.cpp:19: 2023-09-13T17:53:34,593 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:34,594 131 | struct binary_function 2023-09-13T17:53:34,595 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:38,456 [31/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o 2023-09-13T17:53:38,458 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:38,459 from ../../src/ops/forcefield.cpp:31: 2023-09-13T17:53:38,460 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:38,461 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:38,462 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:38,463 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:38,464 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:53:38,466 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:53:38,467 from /usr/include/c++/12/ios:42, 2023-09-13T17:53:38,467 from /usr/include/c++/12/ostream:38, 2023-09-13T17:53:38,468 from /usr/include/c++/12/iostream:39, 2023-09-13T17:53:38,469 from ../../src/ops/forcefield.cpp:29: 2023-09-13T17:53:38,470 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:38,472 131 | struct binary_function 2023-09-13T17:53:38,473 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:38,533 [32/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o 2023-09-13T17:53:38,534 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:38,535 from ../../src/ops/fillUC.cpp:20: 2023-09-13T17:53:38,536 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:38,537 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:38,537 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:38,538 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:38,539 from ../../include/openbabel/op.h:23: 2023-09-13T17:53:38,540 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:38,541 131 | struct binary_function 2023-09-13T17:53:38,542 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:38,543 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:53:38,544 from ../../include/openbabel/dlhandler.h:25, 2023-09-13T17:53:38,545 from ../../include/openbabel/plugin.h:23: 2023-09-13T17:53:38,546 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:53:38,547 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:53:38,560 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:53:38,570 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:38,571 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:53:38,572 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:38,573 inlined from ‘virtual bool OpenBabel::OpFillUC::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’ at ../../src/ops/fillUC.cpp:176:30: 2023-09-13T17:53:38,574 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:53:38,575 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:38,576 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:39,944 [33/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o 2023-09-13T17:53:39,945 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:39,946 from ../../src/ops/largest.cpp:19: 2023-09-13T17:53:39,947 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:39,948 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:39,949 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:39,950 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:39,951 from ../../include/openbabel/op.h:23: 2023-09-13T17:53:39,952 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:39,953 131 | struct binary_function 2023-09-13T17:53:39,954 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:41,228 [34/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o 2023-09-13T17:53:41,229 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:41,230 from ../../src/ops/gen3d.cpp:20: 2023-09-13T17:53:41,231 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:41,232 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:41,233 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:41,234 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:41,234 from ../../include/openbabel/op.h:23: 2023-09-13T17:53:41,235 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:41,236 131 | struct binary_function 2023-09-13T17:53:41,237 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:41,605 [35/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o 2023-09-13T17:53:41,606 In file included from ../../src/ops/loader.cpp:24: 2023-09-13T17:53:41,607 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:41,608 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:41,609 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:41,610 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:41,612 from ../../src/ops/loader.cpp:19: 2023-09-13T17:53:41,613 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:41,614 131 | struct binary_function 2023-09-13T17:53:41,615 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:42,022 [36/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o 2023-09-13T17:53:42,023 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:42,024 from ../../src/ops/neutralize.cpp:19: 2023-09-13T17:53:42,025 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:42,026 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:42,027 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:42,028 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:42,029 from ../../include/openbabel/op.h:23: 2023-09-13T17:53:42,030 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:42,031 131 | struct binary_function 2023-09-13T17:53:42,032 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:46,824 [37/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o 2023-09-13T17:53:46,824 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:53:46,825 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:53:46,826 from ../../src/ops/opsplit.cpp:19: 2023-09-13T17:53:46,827 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:46,828 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:46,829 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:46,830 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:46,831 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:53:46,832 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:53:46,833 from /usr/include/c++/12/ios:42, 2023-09-13T17:53:46,834 from /usr/include/c++/12/ostream:38, 2023-09-13T17:53:46,835 from /usr/include/c++/12/iostream:39, 2023-09-13T17:53:46,836 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:53:46,837 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:46,837 131 | struct binary_function 2023-09-13T17:53:46,838 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:47,264 [38/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o 2023-09-13T17:53:47,265 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:47,266 from ../../include/openbabel/optransform.h:21, 2023-09-13T17:53:47,267 from ../../src/ops/optransform.cpp:19: 2023-09-13T17:53:47,268 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:47,269 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:47,270 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:47,271 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:47,272 from ../../include/openbabel/parsmart.h:23, 2023-09-13T17:53:47,273 from ../../include/openbabel/phmodel.h:23, 2023-09-13T17:53:47,274 from ../../include/openbabel/optransform.h:19: 2023-09-13T17:53:47,275 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:47,276 131 | struct binary_function 2023-09-13T17:53:47,277 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:48,299 [39/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o 2023-09-13T17:53:48,300 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:48,301 from ../../src/ops/readconformers.cpp:19: 2023-09-13T17:53:48,302 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:48,303 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:48,304 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:48,304 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:48,305 from ../../include/openbabel/op.h:23: 2023-09-13T17:53:48,307 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:48,308 131 | struct binary_function 2023-09-13T17:53:48,309 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:48,726 [40/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o 2023-09-13T17:53:48,727 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:48,729 from ../../src/ops/partialcharges.cpp:20: 2023-09-13T17:53:48,732 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:48,732 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:48,733 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:48,734 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:48,735 from ../../include/openbabel/op.h:23: 2023-09-13T17:53:48,736 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:48,737 131 | struct binary_function 2023-09-13T17:53:48,738 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:53,520 [41/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o 2023-09-13T17:53:53,521 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:53,522 from ../../src/ops/xout.cpp:19: 2023-09-13T17:53:53,523 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:53,524 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:53,525 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:53,526 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:53,527 from ../../include/openbabel/op.h:23: 2023-09-13T17:53:53,528 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:53,529 131 | struct binary_function 2023-09-13T17:53:53,530 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:56,127 [42/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o 2023-09-13T17:53:56,129 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:53:56,129 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:53:56,131 from ../../src/ops/ophighlight.cpp:17: 2023-09-13T17:53:56,131 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:56,132 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:56,133 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:56,134 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:56,136 from ../../include/openbabel/parsmart.h:23, 2023-09-13T17:53:56,137 from ../../src/ops/ophighlight.cpp:16: 2023-09-13T17:53:56,137 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:56,139 131 | struct binary_function 2023-09-13T17:53:56,140 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:57,171 [43/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o 2023-09-13T17:53:57,172 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:57,173 from ../../src/ops/opisomorph.h:15, 2023-09-13T17:53:57,174 from ../../src/ops/opisomorph.cpp:17: 2023-09-13T17:53:57,175 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:57,176 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:57,178 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:57,179 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:57,180 from ../../include/openbabel/parsmart.h:23, 2023-09-13T17:53:57,182 from ../../src/ops/opisomorph.cpp:15: 2023-09-13T17:53:57,183 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:57,184 131 | struct binary_function 2023-09-13T17:53:57,185 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:57,416 [44/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o 2023-09-13T17:53:57,417 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:53:57,418 from ../../src/ops/sort.cpp:19: 2023-09-13T17:53:57,419 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:57,419 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:53:57,420 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:57,421 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:53:57,422 from ../../include/openbabel/op.h:23: 2023-09-13T17:53:57,423 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:57,424 131 | struct binary_function 2023-09-13T17:53:57,425 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:57,426 ../../src/ops/sort.cpp:32:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:53:57,427 32 | struct Order : public std::binary_function, std::pair, bool> 2023-09-13T17:53:57,428 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:57,429 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:53:57,430 131 | struct binary_function 2023-09-13T17:53:57,433 | ^~~~~~~~~~~~~~~ 2023-09-13T17:53:57,434 In file included from /usr/include/c++/12/bits/stl_algo.h:60, 2023-09-13T17:53:57,435 from /usr/include/c++/12/algorithm:61, 2023-09-13T17:53:57,436 from ../../src/ops/deferred.h:5, 2023-09-13T17:53:57,438 from ../../src/ops/sort.cpp:24: 2023-09-13T17:53:57,439 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2023-09-13T17:53:57,440 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:57,441 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2023-09-13T17:53:57,443 | ^~~~~~~~~~~~~ 2023-09-13T17:53:57,444 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:53:57,449 from ../../include/openbabel/dlhandler.h:25, 2023-09-13T17:53:57,450 from ../../include/openbabel/plugin.h:23: 2023-09-13T17:53:57,451 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: 2023-09-13T17:53:57,453 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-13T17:53:57,454 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:53:57,456 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:57,458 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2023-09-13T17:53:57,459 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:57,461 82 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, 2023-09-13T17:53:57,465 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:57,469 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:57,471 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:57,471 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:57,473 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2023-09-13T17:53:57,475 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:57,476 1908 | __introsort_loop(_RandomAccessIterator __first, 2023-09-13T17:53:57,478 | ^~~~~~~~~~~~~~~~ 2023-09-13T17:53:57,479 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:57,480 In function ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’, 2023-09-13T17:53:57,490 inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’ at /usr/include/c++/12/bits/stl_algo.h:1921:38: 2023-09-13T17:53:57,491 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:57,492 1887 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2023-09-13T17:53:57,493 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:57,494 1888 | __comp); 2023-09-13T17:53:57,495 | ~~~~~~~ 2023-09-13T17:53:57,496 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:57,497 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2023-09-13T17:53:57,498 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:57,499 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2023-09-13T17:53:57,500 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:57,501 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter >]’: 2023-09-13T17:53:57,502 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:57,504 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2023-09-13T17:53:57,505 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:57,507 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2023-09-13T17:53:57,510 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:57,511 1802 | __insertion_sort(_RandomAccessIterator __first, 2023-09-13T17:53:57,513 | ^~~~~~~~~~~~~~~~ 2023-09-13T17:53:57,514 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:57,515 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-13T17:53:57,516 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:53:57,522 inlined from ‘virtual bool OpenBabel::OpSort::ProcessVec(std::vector&)’ at ../../src/ops/sort.cpp:118:23: 2023-09-13T17:53:57,523 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:57,524 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:53:57,525 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:57,526 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’, 2023-09-13T17:53:57,527 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = OpenBabel::Order]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:53:57,528 inlined from ‘virtual bool OpenBabel::OpSort::ProcessVec(std::vector&)’ at ../../src/ops/sort.cpp:121:14: 2023-09-13T17:53:57,529 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:57,530 1937 | std::__introsort_loop(__first, __last, 2023-09-13T17:53:57,531 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-09-13T17:53:57,532 1938 | std::__lg(__last - __first) * 2, 2023-09-13T17:53:57,540 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:57,541 1939 | __comp); 2023-09-13T17:53:57,542 | ~~~~~~~ 2023-09-13T17:53:57,543 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’, 2023-09-13T17:53:57,544 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2023-09-13T17:53:57,545 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = OpenBabel::Order]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:53:57,546 inlined from ‘virtual bool OpenBabel::OpSort::ProcessVec(std::vector&)’ at ../../src/ops/sort.cpp:121:14: 2023-09-13T17:53:57,547 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:57,548 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2023-09-13T17:53:57,549 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:53:57,550 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:53:57,551 1854 | std::__insertion_sort(__first, __last, __comp); 2023-09-13T17:53:57,552 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:54:00,154 [45/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o 2023-09-13T17:54:00,155 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:54:00,156 from ../../src/ops/conformer.cpp:32: 2023-09-13T17:54:00,157 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:54:00,158 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:54:00,159 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:00,160 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:54:00,161 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:54:00,162 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:54:00,163 from /usr/include/c++/12/ios:42, 2023-09-13T17:54:00,164 from /usr/include/c++/12/ostream:38, 2023-09-13T17:54:00,165 from /usr/include/c++/12/iostream:39, 2023-09-13T17:54:00,165 from ../../src/ops/conformer.cpp:29: 2023-09-13T17:54:00,166 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:54:00,167 131 | struct binary_function 2023-09-13T17:54:00,168 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:03,049 [46/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o 2023-09-13T17:54:03,050 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:54:03,051 from ../../src/ops/opconfab.cpp:23: 2023-09-13T17:54:03,052 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:54:03,053 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:54:03,054 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:03,055 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:54:03,056 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:54:03,057 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:54:03,058 from /usr/include/c++/12/ios:42, 2023-09-13T17:54:03,059 from /usr/include/c++/12/ostream:38, 2023-09-13T17:54:03,060 from /usr/include/c++/12/iostream:39, 2023-09-13T17:54:03,062 from ../../src/ops/opconfab.cpp:22: 2023-09-13T17:54:03,063 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:54:03,064 131 | struct binary_function 2023-09-13T17:54:03,065 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:03,941 [47/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o 2023-09-13T17:54:03,942 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:54:03,943 from ../../src/ops/opalign.cpp:20: 2023-09-13T17:54:03,944 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:54:03,945 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:54:03,946 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:03,947 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:54:03,948 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:54:03,949 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:54:03,950 from /usr/include/c++/12/ios:42, 2023-09-13T17:54:03,951 from /usr/include/c++/12/ostream:38, 2023-09-13T17:54:03,953 from /usr/include/c++/12/iostream:39, 2023-09-13T17:54:03,954 from ../../src/ops/opalign.cpp:19: 2023-09-13T17:54:03,955 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:54:03,956 131 | struct binary_function 2023-09-13T17:54:03,957 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:03,958 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:54:03,959 from ../../include/openbabel/dlhandler.h:25, 2023-09-13T17:54:03,961 from ../../include/openbabel/plugin.h:23: 2023-09-13T17:54:03,962 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:54:03,963 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:54:03,964 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:54:03,965 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:54:03,966 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:54:03,967 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:54:03,968 inlined from ‘virtual bool OpenBabel::OpAlign::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’ at ../../src/ops/opalign.cpp:172:28: 2023-09-13T17:54:03,969 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:54:03,971 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:54:03,972 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:54:03,974 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:54:03,975 inlined from ‘virtual bool OpenBabel::OpAlign::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’ at ../../src/ops/opalign.cpp:217:20: 2023-09-13T17:54:03,978 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:54:03,980 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:54:03,981 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:54:06,091 [48/533] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o 2023-09-13T17:54:06,731 [49/533] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o 2023-09-13T17:54:07,854 [50/533] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o 2023-09-13T17:54:11,916 [51/533] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o 2023-09-13T17:54:14,911 [52/533] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o 2023-09-13T17:54:14,912 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:54:14,913 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:54:14,914 from ../../src/alias.cpp:19: 2023-09-13T17:54:14,915 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:54:14,916 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:54:14,917 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:14,918 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:54:14,919 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:54:14,920 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:54:14,921 from /usr/include/c++/12/ios:42, 2023-09-13T17:54:14,922 from /usr/include/c++/12/istream:38, 2023-09-13T17:54:14,923 from /usr/include/c++/12/sstream:38, 2023-09-13T17:54:14,924 from ../../src/alias.cpp:16: 2023-09-13T17:54:14,926 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:54:14,927 131 | struct binary_function 2023-09-13T17:54:14,928 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:17,058 [53/533] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o 2023-09-13T17:54:17,059 In file included from ../../include/openbabel/chargemodel.h:24, 2023-09-13T17:54:17,060 from ../../src/chargemodel.cpp:21: 2023-09-13T17:54:17,061 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:54:17,061 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:54:17,062 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:17,063 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:54:17,064 from ../../include/openbabel/dlhandler.h:24, 2023-09-13T17:54:17,065 from ../../include/openbabel/plugin.h:23: 2023-09-13T17:54:17,065 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:54:17,070 131 | struct binary_function 2023-09-13T17:54:17,071 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:17,072 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:54:17,073 from ../../include/openbabel/dlhandler.h:25: 2023-09-13T17:54:17,074 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:54:17,075 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:54:17,076 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:54:17,077 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:54:17,078 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:54:17,079 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:54:17,080 inlined from ‘void OpenBabel::OBChargeModel::FillChargeVectors(OpenBabel::OBMol&)’ at ../../src/chargemodel.cpp:45:35: 2023-09-13T17:54:17,081 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:54:17,083 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:54:17,084 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:54:17,085 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:54:17,091 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:54:17,092 inlined from ‘void OpenBabel::OBChargeModel::FillChargeVectors(OpenBabel::OBMol&)’ at ../../src/chargemodel.cpp:46:34: 2023-09-13T17:54:17,093 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:54:17,094 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:54:17,095 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:54:17,116 [54/533] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o 2023-09-13T17:54:24,526 [55/533] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o 2023-09-13T17:54:26,215 [56/533] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o 2023-09-13T17:54:26,216 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:54:26,217 from ../../include/openbabel/data_utilities.h:25, 2023-09-13T17:54:26,218 from ../../src/data_utilities.cpp:28: 2023-09-13T17:54:26,219 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:54:26,220 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:54:26,221 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:54:26,222 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:54:26,223 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:54:26,224 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:54:26,224 inlined from ‘bool OpenBabel::extract_thermochemistry(OBMol&, bool, int*, int, double, double*, double*, double*, double*, double*, double*, double*, double*, std::vector&, double*)’ at ../../src/data_utilities.cpp:188:26: 2023-09-13T17:54:26,226 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:54:26,226 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:54:26,227 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:54:26,228 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:54:26,229 inlined from ‘bool OpenBabel::extract_thermochemistry(OBMol&, bool, int*, int, double, double*, double*, double*, double*, double*, double*, double*, double*, std::vector&, double*)’ at ../../src/data_utilities.cpp:189:26: 2023-09-13T17:54:26,230 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:54:26,232 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:54:26,233 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:54:26,234 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:54:26,235 inlined from ‘bool OpenBabel::extract_thermochemistry(OBMol&, bool, int*, int, double, double*, double*, double*, double*, double*, double*, double*, double*, std::vector&, double*)’ at ../../src/data_utilities.cpp:190:26: 2023-09-13T17:54:26,236 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:54:26,237 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:54:26,238 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:54:26,239 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:54:26,240 inlined from ‘bool OpenBabel::extract_thermochemistry(OBMol&, bool, int*, int, double, double*, double*, double*, double*, double*, double*, double*, double*, std::vector&, double*)’ at ../../src/data_utilities.cpp:191:26: 2023-09-13T17:54:26,249 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:54:26,251 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:54:26,252 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:54:26,253 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:54:26,254 inlined from ‘bool OpenBabel::extract_thermochemistry(OBMol&, bool, int*, int, double, double*, double*, double*, double*, double*, double*, double*, double*, std::vector&, double*)’ at ../../src/data_utilities.cpp:192:26: 2023-09-13T17:54:26,255 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:54:26,256 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:54:26,256 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:54:31,733 [57/533] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o 2023-09-13T17:54:31,734 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:54:31,735 from ../../include/openbabel/data.h:28, 2023-09-13T17:54:31,736 from ../../src/data.cpp:25: 2023-09-13T17:54:31,738 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBAtomHOF&}; _Tp = OpenBabel::OBAtomHOF; _Alloc = std::allocator]’: 2023-09-13T17:54:31,739 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:54:31,740 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:54:31,741 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:54:31,742 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:54:31,743 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBAtomHOF; _Alloc = std::allocator]’, 2023-09-13T17:54:31,744 inlined from ‘virtual void OpenBabel::OBAtomicHeatOfFormationTable::ParseLine(const char*)’ at ../../src/data.cpp:120:31: 2023-09-13T17:54:31,745 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:54:31,746 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:54:31,747 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:54:36,429 [58/533] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o 2023-09-13T17:54:36,430 In file included from ../../include/openbabel/descriptor.h:27, 2023-09-13T17:54:36,431 from ../../src/descriptor.cpp:23: 2023-09-13T17:54:36,432 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:54:36,433 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:54:36,434 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:36,435 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:54:36,436 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:54:36,437 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:54:36,438 from /usr/include/c++/12/ios:42, 2023-09-13T17:54:36,440 from /usr/include/c++/12/istream:38, 2023-09-13T17:54:36,441 from /usr/include/c++/12/sstream:38, 2023-09-13T17:54:36,442 from ../../include/openbabel/oberror.h:26, 2023-09-13T17:54:36,443 from ../../src/descriptor.cpp:20: 2023-09-13T17:54:36,444 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:54:36,445 131 | struct binary_function 2023-09-13T17:54:36,446 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:41,187 [59/533] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o 2023-09-13T17:54:41,188 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:54:41,190 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:54:41,191 from ../../src/builder.cpp:31: 2023-09-13T17:54:41,192 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:54:41,194 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:54:41,195 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:41,196 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-13T17:54:41,197 from /usr/include/c++/12/vector:66, 2023-09-13T17:54:41,198 from ../../include/openbabel/builder.h:23, 2023-09-13T17:54:41,205 from ../../src/builder.cpp:22: 2023-09-13T17:54:41,207 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:54:41,208 131 | struct binary_function 2023-09-13T17:54:41,209 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:41,210 In file included from /usr/include/c++/12/vector:70: 2023-09-13T17:54:41,212 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:54:41,213 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:54:41,214 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:54:41,215 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:54:41,217 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:54:41,218 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:54:41,230 inlined from ‘void OpenBabel::OBBuilder::LoadFragments()’ at ../../src/builder.cpp:145:25: 2023-09-13T17:54:41,232 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:54:41,233 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:54:41,235 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:54:41,237 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:54:41,241 inlined from ‘std::vector OpenBabel::OBBuilder::GetFragmentCoord(std::string)’ at ../../src/builder.cpp:193:25: 2023-09-13T17:54:41,242 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:54:41,244 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:54:41,250 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:54:41,252 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:54:41,255 inlined from ‘static void OpenBabel::OBBuilder::ConnectFrags(OpenBabel::OBMol&, OpenBabel::OBMol&, std::vector, std::vector, std::vector)’ at ../../src/builder.cpp:1448:26: 2023-09-13T17:54:41,257 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:54:41,259 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:54:41,261 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:54:42,297 [60/533] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o 2023-09-13T17:54:44,336 [61/533] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o 2023-09-13T17:54:45,147 [62/533] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o 2023-09-13T17:54:45,148 In file included from ../../include/openbabel/fingerprint.h:28, 2023-09-13T17:54:45,149 from ../../src/fingerprint.cpp:27: 2023-09-13T17:54:45,150 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:54:45,151 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:54:45,153 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:45,155 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-13T17:54:45,156 from /usr/include/c++/12/vector:66, 2023-09-13T17:54:45,157 from ../../src/fingerprint.cpp:21: 2023-09-13T17:54:45,158 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:54:45,159 131 | struct binary_function 2023-09-13T17:54:45,170 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:47,538 [63/533] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o 2023-09-13T17:54:47,539 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:54:47,540 from ../../src/format.cpp:20: 2023-09-13T17:54:47,541 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:54:47,542 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:54:47,542 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:47,543 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:54:47,544 from ../../include/openbabel/dlhandler.h:24, 2023-09-13T17:54:47,545 from ../../include/openbabel/plugin.h:23: 2023-09-13T17:54:47,546 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:54:47,547 131 | struct binary_function 2023-09-13T17:54:47,548 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:48,151 [64/533] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o 2023-09-13T17:54:48,152 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:54:48,154 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:54:48,155 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:54:48,156 from ../../src/formats/MCDLformat.cpp:21: 2023-09-13T17:54:48,157 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:54:48,158 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:54:48,159 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:48,161 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:54:48,162 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:54:48,163 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:54:48,164 from /usr/include/c++/12/ios:42, 2023-09-13T17:54:48,165 from /usr/include/c++/12/ostream:38, 2023-09-13T17:54:48,166 from /usr/include/c++/12/iostream:39, 2023-09-13T17:54:48,167 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:54:48,169 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:54:48,170 131 | struct binary_function 2023-09-13T17:54:48,171 | ^~~~~~~~~~~~~~~ 2023-09-13T17:54:52,478 [65/533] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o 2023-09-13T17:54:52,479 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:54:52,480 from ../../include/openbabel/mol.h:44, 2023-09-13T17:54:52,481 from ../../src/grid.cpp:22: 2023-09-13T17:54:52,482 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:54:52,483 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:54:52,484 523 | vector<_Tp, _Alloc>:: 2023-09-13T17:54:52,485 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:54:52,486 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:54:52,487 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:54:52,488 inlined from ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’ at ../../src/grid.cpp:86:19: 2023-09-13T17:54:52,489 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:54:52,490 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2023-09-13T17:54:52,491 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:54:55,325 [66/533] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o 2023-09-13T17:54:58,745 [67/533] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o 2023-09-13T17:54:58,891 [68/533] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o 2023-09-13T17:55:01,147 [69/533] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o 2023-09-13T17:55:03,539 [70/533] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o 2023-09-13T17:55:06,714 [71/533] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o 2023-09-13T17:55:06,715 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:55:06,716 from ../../include/openbabel/mol.h:44, 2023-09-13T17:55:06,717 from ../../src/generic.cpp:25: 2023-09-13T17:55:06,718 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBAngle&}; _Tp = OpenBabel::OBAngle; _Alloc = std::allocator]’: 2023-09-13T17:55:06,720 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:55:06,721 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:55:06,722 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:06,723 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:55:06,724 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBAngle; _Alloc = std::allocator]’, 2023-09-13T17:55:06,725 inlined from ‘void OpenBabel::OBAngleData::SetData(OpenBabel::OBAngle&)’ at ../../src/generic.cpp:1061:22: 2023-09-13T17:55:06,726 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:06,727 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:06,728 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:06,729 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::triple&}; _Tp = OpenBabel::triple; _Alloc = std::allocator >]’: 2023-09-13T17:55:06,730 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-13T17:55:06,731 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:55:06,732 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:06,733 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::triple; _Alloc = std::allocator >]’, 2023-09-13T17:55:06,734 inlined from ‘bool OpenBabel::OBTorsion::AddTorsion(OpenBabel::quad&)’ at ../../src/generic.cpp:1278:19: 2023-09-13T17:55:06,735 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:06,736 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:06,737 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:06,737 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::triple; _Alloc = std::allocator >]’, 2023-09-13T17:55:06,738 inlined from ‘OpenBabel::OBTorsion::OBTorsion(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*)’ at ../../src/generic.cpp:1129:19: 2023-09-13T17:55:06,739 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:06,740 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:06,742 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:06,743 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::triple; _Alloc = std::allocator >]’, 2023-09-13T17:55:06,745 inlined from ‘bool OpenBabel::OBTorsion::AddTorsion(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*)’ at ../../src/generic.cpp:1258:19: 2023-09-13T17:55:06,746 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:06,747 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:06,748 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:06,749 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBOrbital&}; _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’: 2023-09-13T17:55:06,750 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:55:06,751 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:55:06,770 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:06,772 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:55:06,773 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:55:06,774 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:55:06,775 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:55:06,776 inlined from ‘std::vector OpenBabel::OBUnitCell::GetCellVectors() const’ at ../../src/generic.cpp:334:16: 2023-09-13T17:55:06,778 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:06,780 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:55:06,781 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:06,782 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:55:06,783 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:55:06,784 inlined from ‘std::vector OpenBabel::OBUnitCell::GetCellVectors() const’ at ../../src/generic.cpp:335:16: 2023-09-13T17:55:06,785 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:06,786 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:55:06,787 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:06,788 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:55:06,790 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:55:06,791 inlined from ‘std::vector OpenBabel::OBUnitCell::GetCellVectors() const’ at ../../src/generic.cpp:336:16: 2023-09-13T17:55:06,792 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:06,793 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:55:06,794 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:06,795 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’, 2023-09-13T17:55:06,796 inlined from ‘void OpenBabel::OBOrbitalData::LoadClosedShellOrbitals(std::vector, std::vector >, unsigned int)’ at ../../src/generic.cpp:1411:33: 2023-09-13T17:55:06,797 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:06,798 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:06,799 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:06,810 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’, 2023-09-13T17:55:06,811 inlined from ‘void OpenBabel::OBOrbitalData::LoadAlphaOrbitals(std::vector, std::vector >, unsigned int)’ at ../../src/generic.cpp:1440:33: 2023-09-13T17:55:06,812 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:06,813 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:06,814 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:06,814 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’, 2023-09-13T17:55:06,815 inlined from ‘void OpenBabel::OBOrbitalData::LoadBetaOrbitals(std::vector, std::vector >, unsigned int)’ at ../../src/generic.cpp:1469:32: 2023-09-13T17:55:06,816 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:06,817 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:06,818 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:07,835 [72/533] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o 2023-09-13T17:55:10,991 [73/533] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o 2023-09-13T17:55:13,796 [74/533] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o 2023-09-13T17:55:13,797 In file included from ../../include/openbabel/forcefield.h:28, 2023-09-13T17:55:13,798 from ../../src/forcefield.cpp:24: 2023-09-13T17:55:13,799 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:55:13,800 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:55:13,801 | ^~~~~~~~~~~~~~~ 2023-09-13T17:55:13,802 In file included from /usr/include/c++/12/bits/stl_tree.h:65, 2023-09-13T17:55:13,804 from /usr/include/c++/12/set:60, 2023-09-13T17:55:13,805 from ../../src/forcefield.cpp:22: 2023-09-13T17:55:13,806 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:55:13,807 131 | struct binary_function 2023-09-13T17:55:13,808 | ^~~~~~~~~~~~~~~ 2023-09-13T17:55:13,809 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:55:13,810 from ../../include/openbabel/forcefield.h:22: 2023-09-13T17:55:13,811 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFConstraint&}; _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’: 2023-09-13T17:55:13,812 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:55:13,813 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:55:13,814 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:13,815 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:55:13,816 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’, 2023-09-13T17:55:13,818 inlined from ‘void OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’ at ../../src/forcefield.cpp:660:27: 2023-09-13T17:55:13,819 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:13,820 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:13,820 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:13,821 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’, 2023-09-13T17:55:13,822 inlined from ‘void OpenBabel::OBFFConstraints::AddIgnore(int)’ at ../../src/forcefield.cpp:580:27: 2023-09-13T17:55:13,829 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:13,830 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:13,831 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:13,832 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’, 2023-09-13T17:55:13,833 inlined from ‘void OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’ at ../../src/forcefield.cpp:624:27: 2023-09-13T17:55:13,834 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:13,835 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:13,836 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:13,837 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’, 2023-09-13T17:55:13,838 inlined from ‘void OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’ at ../../src/forcefield.cpp:635:27: 2023-09-13T17:55:13,839 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:13,840 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:13,841 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:13,851 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’, 2023-09-13T17:55:13,852 inlined from ‘void OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’ at ../../src/forcefield.cpp:602:27: 2023-09-13T17:55:13,853 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:13,854 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:13,856 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:13,857 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’, 2023-09-13T17:55:13,858 inlined from ‘void OpenBabel::OBFFConstraints::AddAtomConstraint(int)’ at ../../src/forcefield.cpp:591:27: 2023-09-13T17:55:13,860 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:13,861 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:13,862 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:13,863 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’, 2023-09-13T17:55:13,864 inlined from ‘void OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’ at ../../src/forcefield.cpp:613:27: 2023-09-13T17:55:13,865 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:13,866 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:13,867 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:13,868 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’, 2023-09-13T17:55:13,869 inlined from ‘void OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’ at ../../src/forcefield.cpp:647:27: 2023-09-13T17:55:13,871 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:13,872 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:13,874 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:13,875 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:55:13,878 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:55:13,879 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:55:13,880 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:13,881 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:55:13,886 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:55:13,887 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:55:13,889 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:55:13,890 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:55:13,892 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:55:13,893 inlined from ‘bool OpenBabel::OBForceField::RandomRotorSearchNextConformer(unsigned int)’ at ../../src/forcefield.cpp:1535:24: 2023-09-13T17:55:13,894 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:13,895 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:55:13,897 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:13,901 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:55:13,902 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:55:13,903 inlined from ‘bool OpenBabel::OBForceField::SystematicRotorSearchNextConformer(unsigned int)’ at ../../src/forcefield.cpp:1269:24: 2023-09-13T17:55:13,903 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:13,904 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:55:13,905 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:13,906 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:55:13,920 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:55:13,921 inlined from ‘void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)’ at ../../src/forcefield.cpp:1655:26: 2023-09-13T17:55:13,922 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:13,923 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:55:13,924 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:13,925 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:55:13,926 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:55:13,927 inlined from ‘void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)’ at ../../src/forcefield.cpp:1660:24: 2023-09-13T17:55:13,928 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:13,929 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:55:13,931 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:13,932 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:55:13,933 inlined from ‘void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)’ at ../../src/forcefield.cpp:1709:27: 2023-09-13T17:55:13,934 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:13,935 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:13,936 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:13,937 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:55:13,938 inlined from ‘void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)’ at ../../src/forcefield.cpp:1728:28: 2023-09-13T17:55:13,939 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:13,940 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:13,941 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:13,942 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:55:13,943 inlined from ‘void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)’ at ../../src/forcefield.cpp:1785:26: 2023-09-13T17:55:13,944 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:13,944 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:13,945 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:13,946 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:55:13,947 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:55:13,948 inlined from ‘bool OpenBabel::OBForceField::GetCoordinates(OpenBabel::OBMol&)’ at ../../src/forcefield.cpp:1044:23: 2023-09-13T17:55:13,949 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:13,950 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:55:13,951 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:14,728 [75/533] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o 2023-09-13T17:55:17,533 [76/533] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o 2023-09-13T17:55:20,523 [77/533] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o 2023-09-13T17:55:20,524 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:55:20,525 from ../../src/op.cpp:20: 2023-09-13T17:55:20,527 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:55:20,528 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:55:20,529 | ^~~~~~~~~~~~~~~ 2023-09-13T17:55:20,530 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:55:20,531 from ../../include/openbabel/op.h:23: 2023-09-13T17:55:20,532 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:55:20,533 131 | struct binary_function 2023-09-13T17:55:20,534 | ^~~~~~~~~~~~~~~ 2023-09-13T17:55:25,136 [78/533] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o 2023-09-13T17:55:31,748 [79/533] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o 2023-09-13T17:55:31,814 [80/533] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o 2023-09-13T17:55:31,814 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:55:31,815 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:55:31,816 from ../../src/obconversion.cpp:48: 2023-09-13T17:55:31,817 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:55:31,818 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:55:31,819 | ^~~~~~~~~~~~~~~ 2023-09-13T17:55:31,820 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:55:31,822 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:55:31,822 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:55:31,823 from /usr/include/c++/12/ios:42, 2023-09-13T17:55:31,824 from /usr/include/c++/12/istream:38, 2023-09-13T17:55:31,825 from /usr/include/c++/12/fstream:38, 2023-09-13T17:55:31,826 from ../../src/obconversion.cpp:37: 2023-09-13T17:55:31,826 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:55:31,827 131 | struct binary_function 2023-09-13T17:55:31,828 | ^~~~~~~~~~~~~~~ 2023-09-13T17:55:36,984 [81/533] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o 2023-09-13T17:55:38,573 [82/533] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o 2023-09-13T17:55:38,574 In file included from ../../src/plugin.cpp:20: 2023-09-13T17:55:38,574 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:55:38,575 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:55:38,576 | ^~~~~~~~~~~~~~~ 2023-09-13T17:55:38,577 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:55:38,578 from ../../include/openbabel/dlhandler.h:24, 2023-09-13T17:55:38,579 from ../../include/openbabel/plugin.h:23: 2023-09-13T17:55:38,580 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:55:38,581 131 | struct binary_function 2023-09-13T17:55:38,582 | ^~~~~~~~~~~~~~~ 2023-09-13T17:55:40,773 [83/533] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o 2023-09-13T17:55:42,536 [84/533] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o 2023-09-13T17:55:42,537 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:55:42,538 from ../../include/openbabel/mol.h:44, 2023-09-13T17:55:42,539 from ../../src/phmodel.cpp:21: 2023-09-13T17:55:42,540 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:55:42,541 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:55:42,542 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:55:42,543 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:42,544 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:55:42,545 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:55:42,546 inlined from ‘virtual void OpenBabel::OBPhModel::ParseLine(const char*)’ at ../../src/phmodel.cpp:94:24: 2023-09-13T17:55:42,547 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:42,548 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:55:42,549 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:42,550 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:55:42,551 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:55:42,552 inlined from ‘virtual void OpenBabel::OBPhModel::ParseLine(const char*)’ at ../../src/phmodel.cpp:117:23: 2023-09-13T17:55:42,553 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:42,554 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:55:42,555 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:42,965 [85/533] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o 2023-09-13T17:55:46,509 [86/533] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o 2023-09-13T17:55:46,510 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:55:46,511 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:55:46,512 from ../../src/query.cpp:29: 2023-09-13T17:55:46,512 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:55:46,513 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:55:46,514 | ^~~~~~~~~~~~~~~ 2023-09-13T17:55:46,515 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-13T17:55:46,516 from /usr/include/c++/12/vector:66, 2023-09-13T17:55:46,517 from ../../include/openbabel/base.h:25, 2023-09-13T17:55:46,518 from ../../include/openbabel/bond.h:31, 2023-09-13T17:55:46,519 from ../../include/openbabel/query.h:27, 2023-09-13T17:55:46,520 from ../../src/query.cpp:25: 2023-09-13T17:55:46,521 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:55:46,522 131 | struct binary_function 2023-09-13T17:55:46,523 | ^~~~~~~~~~~~~~~ 2023-09-13T17:55:51,147 [87/533] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o 2023-09-13T17:55:51,148 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:55:51,149 from ../../include/openbabel/mol.h:44, 2023-09-13T17:55:51,150 from ../../src/mol.cpp:22: 2023-09-13T17:55:51,151 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: 2023-09-13T17:55:51,152 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-13T17:55:51,153 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:55:51,154 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:51,155 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBMol&}; _Tp = OpenBabel::OBMol; _Alloc = std::allocator]’: 2023-09-13T17:55:51,156 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:55:51,157 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:55:51,158 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator]’, 2023-09-13T17:55:51,159 inlined from ‘std::vector OpenBabel::OBMol::Separate(int)’ at ../../src/mol.cpp:4001:23: 2023-09-13T17:55:51,160 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:55:51,161 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:51,162 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:51,163 In file included from /usr/include/c++/12/algorithm:61, 2023-09-13T17:55:51,164 from ../../include/openbabel/ring.h:24, 2023-09-13T17:55:51,165 from ../../src/mol.cpp:24: 2023-09-13T17:55:51,166 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-13T17:55:51,167 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,167 1802 | __insertion_sort(_RandomAccessIterator __first, 2023-09-13T17:55:51,168 | ^~~~~~~~~~~~~~~~ 2023-09-13T17:55:51,169 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,170 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-13T17:55:51,171 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,172 82 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, 2023-09-13T17:55:51,173 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:51,174 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,175 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,176 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,177 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2023-09-13T17:55:51,178 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-13T17:55:51,179 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,180 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2023-09-13T17:55:51,181 | ^~~~~~~~~~~~~ 2023-09-13T17:55:51,182 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-13T17:55:51,182 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,183 1908 | __introsort_loop(_RandomAccessIterator __first, 2023-09-13T17:55:51,184 | ^~~~~~~~~~~~~~~~ 2023-09-13T17:55:51,185 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,185 In function ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-13T17:55:51,186 inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1921:38: 2023-09-13T17:55:51,187 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,188 1887 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2023-09-13T17:55:51,189 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:51,190 1888 | __comp); 2023-09-13T17:55:51,191 | ~~~~~~~ 2023-09-13T17:55:51,200 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,201 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-13T17:55:51,202 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,203 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2023-09-13T17:55:51,204 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:51,205 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-13T17:55:51,206 inlined from ‘void OpenBabel::OBMol::ConnectTheDots()’ at ../../src/mol.cpp:3002:31: 2023-09-13T17:55:51,207 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,208 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:51,209 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:51,210 In function ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-13T17:55:51,211 inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1921:38, 2023-09-13T17:55:51,212 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1937:25, 2023-09-13T17:55:51,213 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(const pair&, const pair&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:55:51,216 inlined from ‘void OpenBabel::OBMol::ConnectTheDots()’ at ../../src/mol.cpp:3004:9: 2023-09-13T17:55:51,230 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,231 1887 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2023-09-13T17:55:51,232 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:51,233 1888 | __comp); 2023-09-13T17:55:51,234 | ~~~~~~~ 2023-09-13T17:55:51,241 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,242 In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-13T17:55:51,243 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1937:25, 2023-09-13T17:55:51,244 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(const pair&, const pair&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:55:51,245 inlined from ‘void OpenBabel::OBMol::ConnectTheDots()’ at ../../src/mol.cpp:3004:9: 2023-09-13T17:55:51,246 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,247 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2023-09-13T17:55:51,248 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:51,249 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-13T17:55:51,250 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2023-09-13T17:55:51,260 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(const pair&, const pair&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:55:51,261 inlined from ‘void OpenBabel::OBMol::ConnectTheDots()’ at ../../src/mol.cpp:3004:9: 2023-09-13T17:55:51,262 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,264 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2023-09-13T17:55:51,265 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:51,266 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,267 1854 | std::__insertion_sort(__first, __last, __comp); 2023-09-13T17:55:51,268 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:51,269 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-13T17:55:51,270 inlined from ‘void OpenBabel::OBMol::PerceiveBondOrders()’ at ../../src/mol.cpp:3412:30: 2023-09-13T17:55:51,271 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,272 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:55:51,273 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:55:51,274 In function ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-13T17:55:51,275 inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1921:38, 2023-09-13T17:55:51,276 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1937:25, 2023-09-13T17:55:51,277 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(const pair&, const pair&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:55:51,278 inlined from ‘void OpenBabel::OBMol::PerceiveBondOrders()’ at ../../src/mol.cpp:3414:9: 2023-09-13T17:55:51,279 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,280 1887 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2023-09-13T17:55:51,281 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:51,282 1888 | __comp); 2023-09-13T17:55:51,283 | ~~~~~~~ 2023-09-13T17:55:51,284 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,285 In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-13T17:55:51,286 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1937:25, 2023-09-13T17:55:51,287 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(const pair&, const pair&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:55:51,288 inlined from ‘void OpenBabel::OBMol::PerceiveBondOrders()’ at ../../src/mol.cpp:3414:9: 2023-09-13T17:55:51,289 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,290 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2023-09-13T17:55:51,291 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:51,291 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-13T17:55:51,292 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2023-09-13T17:55:51,293 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(const pair&, const pair&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:55:51,294 inlined from ‘void OpenBabel::OBMol::PerceiveBondOrders()’ at ../../src/mol.cpp:3414:9: 2023-09-13T17:55:51,294 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,295 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2023-09-13T17:55:51,296 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:51,297 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:55:51,298 1854 | std::__insertion_sort(__first, __last, __comp); 2023-09-13T17:55:51,299 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:55:51,594 [88/533] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o 2023-09-13T17:55:52,604 [89/533] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o 2023-09-13T17:55:52,807 [90/533] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o 2023-09-13T17:56:03,755 [91/533] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o 2023-09-13T17:56:03,756 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:56:03,757 from ../../include/openbabel/mol.h:44, 2023-09-13T17:56:03,758 from ../../src/rotamer.cpp:21: 2023-09-13T17:56:03,759 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:56:03,760 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:56:03,761 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:56:03,762 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:03,763 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:56:03,763 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:56:03,764 inlined from ‘void OpenBabel::OBRotamerList::Setup(OpenBabel::OBMol&, OpenBabel::OBRotorList&)’ at ../../src/rotamer.cpp:258:33: 2023-09-13T17:56:03,765 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:03,765 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:56:03,766 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:56:04,032 [92/533] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o 2023-09-13T17:56:06,687 [93/533] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o 2023-09-13T17:56:06,688 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:56:06,689 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:56:06,690 from ../../src/tautomer.cpp:26: 2023-09-13T17:56:06,691 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:56:06,692 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:56:06,693 | ^~~~~~~~~~~~~~~ 2023-09-13T17:56:06,694 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:56:06,695 from ../../include/openbabel/tautomer.h:24, 2023-09-13T17:56:06,696 from ../../src/tautomer.cpp:19: 2023-09-13T17:56:06,697 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:56:06,697 131 | struct binary_function 2023-09-13T17:56:06,698 | ^~~~~~~~~~~~~~~ 2023-09-13T17:56:08,405 [94/533] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o 2023-09-13T17:56:08,727 [95/533] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o 2023-09-13T17:56:08,728 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:56:08,729 from ../../include/openbabel/mol.h:44, 2023-09-13T17:56:08,730 from ../../src/rotor.cpp:22: 2023-09-13T17:56:08,731 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:56:08,732 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:56:08,733 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:56:08,734 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:08,735 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:56:08,736 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:56:08,737 inlined from ‘void OpenBabel::OBRotor::RemoveSymTorsionValues(int)’ at ../../src/rotor.cpp:756:25: 2023-09-13T17:56:08,738 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:08,751 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:56:08,752 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:56:08,753 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:56:08,754 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:56:08,754 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:56:08,755 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:08,756 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:56:08,757 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:08,758 inlined from ‘void OpenBabel::OBRotor::Precalc(std::vector&)’ at ../../src/rotor.cpp:683:25: 2023-09-13T17:56:08,759 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:08,760 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:08,761 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:08,762 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:56:08,763 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:08,763 inlined from ‘void OpenBabel::OBRotor::Precalc(std::vector&)’ at ../../src/rotor.cpp:684:25: 2023-09-13T17:56:08,764 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:08,765 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:08,766 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:08,767 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:56:08,768 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:08,769 inlined from ‘void OpenBabel::OBRotor::Precalc(std::vector&)’ at ../../src/rotor.cpp:685:24: 2023-09-13T17:56:08,770 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:08,771 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:08,778 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:08,779 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:56:08,781 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:08,782 inlined from ‘void OpenBabel::OBRotor::Precalc(std::vector&)’ at ../../src/rotor.cpp:691:26: 2023-09-13T17:56:08,783 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:08,785 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:08,786 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:08,787 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:56:08,789 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:08,790 inlined from ‘virtual void OpenBabel::OBRotorRules::ParseLine(const char*)’ at ../../src/rotor.cpp:833:28: 2023-09-13T17:56:08,791 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:08,792 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:08,792 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:08,793 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:56:08,794 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:08,795 inlined from ‘virtual void OpenBabel::OBRotorRules::ParseLine(const char*)’ at ../../src/rotor.cpp:842:28: 2023-09-13T17:56:08,796 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:08,797 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:08,798 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:08,799 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:56:08,800 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:08,810 inlined from ‘virtual void OpenBabel::OBRotorRules::ParseLine(const char*)’ at ../../src/rotor.cpp:851:28: 2023-09-13T17:56:08,811 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:08,812 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:08,813 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:08,814 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:56:08,815 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:08,816 inlined from ‘virtual void OpenBabel::OBRotorRules::ParseLine(const char*)’ at ../../src/rotor.cpp:873:29: 2023-09-13T17:56:08,817 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:08,818 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:08,819 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:09,597 [96/533] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o 2023-09-13T17:56:14,559 [97/533] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o 2023-09-13T17:56:14,559 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:56:14,561 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:56:14,563 from ../../src/mcdlutil.cpp:27: 2023-09-13T17:56:14,565 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:56:14,566 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:56:14,569 | ^~~~~~~~~~~~~~~ 2023-09-13T17:56:14,571 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-13T17:56:14,572 from /usr/include/c++/12/vector:66, 2023-09-13T17:56:14,574 from ../../include/openbabel/mol.h:44, 2023-09-13T17:56:14,575 from ../../src/mcdlutil.cpp:22: 2023-09-13T17:56:14,577 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:56:14,578 131 | struct binary_function 2023-09-13T17:56:14,579 | ^~~~~~~~~~~~~~~ 2023-09-13T17:56:15,216 [98/533] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o 2023-09-13T17:56:15,218 In file included from ../../include/openbabel/descriptor.h:27, 2023-09-13T17:56:15,218 from ../../src/transform.cpp:23: 2023-09-13T17:56:15,219 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:56:15,220 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:56:15,221 | ^~~~~~~~~~~~~~~ 2023-09-13T17:56:15,222 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:56:15,223 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:56:15,224 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:56:15,225 from /usr/include/c++/12/ios:42, 2023-09-13T17:56:15,226 from /usr/include/c++/12/istream:38, 2023-09-13T17:56:15,227 from /usr/include/c++/12/sstream:38, 2023-09-13T17:56:15,228 from ../../src/transform.cpp:19: 2023-09-13T17:56:15,229 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:56:15,230 131 | struct binary_function 2023-09-13T17:56:15,232 | ^~~~~~~~~~~~~~~ 2023-09-13T17:56:19,318 [99/533] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o 2023-09-13T17:56:20,976 [100/533] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o 2023-09-13T17:56:22,781 [101/533] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o 2023-09-13T17:56:22,782 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:56:22,783 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:56:22,784 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:56:22,784 from ../../src/obmolecformat.cpp:19: 2023-09-13T17:56:22,785 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:56:22,786 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:56:22,787 | ^~~~~~~~~~~~~~~ 2023-09-13T17:56:22,788 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:56:22,789 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:56:22,790 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:56:22,791 from /usr/include/c++/12/ios:42, 2023-09-13T17:56:22,792 from /usr/include/c++/12/ostream:38, 2023-09-13T17:56:22,794 from /usr/include/c++/12/iostream:39, 2023-09-13T17:56:22,795 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:56:22,796 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:56:22,797 131 | struct binary_function 2023-09-13T17:56:22,798 | ^~~~~~~~~~~~~~~ 2023-09-13T17:56:22,799 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:56:22,800 from ../../include/openbabel/obconversion.h:30: 2023-09-13T17:56:22,801 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBMol&}; _Tp = OpenBabel::OBMol; _Alloc = std::allocator]’: 2023-09-13T17:56:22,802 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:56:22,803 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:56:22,804 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:22,804 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:56:22,805 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator]’, 2023-09-13T17:56:22,806 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22, 2023-09-13T17:56:22,807 inlined from ‘static _OI std::__copy_move::__copy_m(_II, _II, _OI) [with _II = OpenBabel::OBMol*; _OI = std::back_insert_iterator >]’ at /usr/include/c++/12/bits/stl_algobase.h:385:18, 2023-09-13T17:56:22,808 inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = OpenBabel::OBMol*; _OI = back_insert_iterator >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30, 2023-09-13T17:56:22,809 inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = OpenBabel::OBMol*; _OI = back_insert_iterator >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42, 2023-09-13T17:56:22,810 inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = back_insert_iterator >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31, 2023-09-13T17:56:22,811 inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = back_insert_iterator >]’ at /usr/include/c++/12/bits/stl_algobase.h:620:7, 2023-09-13T17:56:22,812 inlined from ‘static bool OpenBabel::OBMoleculeFormat::ReadChemObjectImpl(OpenBabel::OBConversion*, OpenBabel::OBFormat*)’ at ../../src/obmolecformat.cpp:74:16: 2023-09-13T17:56:22,814 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:22,815 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:56:22,816 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:56:26,886 [102/533] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o 2023-09-13T17:56:27,125 [103/533] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o 2023-09-13T17:56:32,435 [104/533] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o 2023-09-13T17:56:33,529 [105/533] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.cpp.o 2023-09-13T17:56:33,530 In file included from ../../include/openbabel/forcefield.h:28, 2023-09-13T17:56:33,531 from ../../src/confsearch.cpp:24: 2023-09-13T17:56:33,532 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:56:33,533 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:56:33,534 | ^~~~~~~~~~~~~~~ 2023-09-13T17:56:33,535 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-13T17:56:33,536 from /usr/include/c++/12/vector:66, 2023-09-13T17:56:33,537 from ../../include/openbabel/atom.h:30, 2023-09-13T17:56:33,538 from ../../src/confsearch.cpp:22: 2023-09-13T17:56:33,539 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:56:33,540 131 | struct binary_function 2023-09-13T17:56:33,541 | ^~~~~~~~~~~~~~~ 2023-09-13T17:56:33,542 ../../src/confsearch.cpp: In constructor ‘OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)’: 2023-09-13T17:56:33,543 ../../src/confsearch.cpp:134:66: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-13T17:56:33,544 134 | vec.erase(std::remove_if(vec.begin(), vec.end(), std::bind2nd(std::less(), (cutoff + 0.1) )), vec.end()); 2023-09-13T17:56:33,545 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,546 In file included from /usr/include/c++/12/bits/stl_function.h:1438: 2023-09-13T17:56:33,547 /usr/include/c++/12/backward/binders.h:172:5: note: declared here 2023-09-13T17:56:33,547 172 | bind2nd(const _Operation& __fn, const _Tp& __x) 2023-09-13T17:56:33,548 | ^~~~~~~ 2023-09-13T17:56:33,549 ../../src/confsearch.cpp: In member function ‘int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)’: 2023-09-13T17:56:33,550 ../../src/confsearch.cpp:444:77: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-13T17:56:33,551 444 | transform(_energies.begin(), _energies.end(), _energies.begin(), bind2nd(std::plus(), energy_offset)); 2023-09-13T17:56:33,553 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,554 /usr/include/c++/12/backward/binders.h:172:5: note: declared here 2023-09-13T17:56:33,554 172 | bind2nd(const _Operation& __fn, const _Tp& __x) 2023-09-13T17:56:33,556 | ^~~~~~~ 2023-09-13T17:56:33,557 In file included from /usr/include/c++/12/vector:60: 2023-09-13T17:56:33,558 /usr/include/c++/12/bits/stl_algobase.h: In function ‘_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred > >]’: 2023-09-13T17:56:33,559 /usr/include/c++/12/bits/stl_algobase.h:2131:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:33,560 2131 | __remove_if(_ForwardIterator __first, _ForwardIterator __last, 2023-09-13T17:56:33,561 | ^~~~~~~~~~~ 2023-09-13T17:56:33,562 /usr/include/c++/12/bits/stl_algobase.h:2131:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:33,563 In file included from /usr/include/c++/12/vector:70: 2023-09-13T17:56:33,564 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:56:33,565 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:56:33,566 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:56:33,570 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,571 In file included from /usr/include/c++/12/algorithm:61, 2023-09-13T17:56:33,572 from /usr/include/eigen3/Eigen/Core:95, 2023-09-13T17:56:33,573 from ../../include/openbabel/math/align.h:26, 2023-09-13T17:56:33,574 from ../../src/confsearch.cpp:27: 2023-09-13T17:56:33,575 In function ‘_FIter std::remove_if(_FIter, _FIter, _Predicate) [with _FIter = __gnu_cxx::__normal_iterator >; _Predicate = binder2nd >]’, 2023-09-13T17:56:33,576 inlined from ‘OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)’ at ../../src/confsearch.cpp:134:29: 2023-09-13T17:56:33,577 /usr/include/c++/12/bits/stl_algo.h:877:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:33,581 877 | return std::__remove_if(__first, __last, 2023-09-13T17:56:33,582 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,583 878 | __gnu_cxx::__ops::__pred_iter(__pred)); 2023-09-13T17:56:33,583 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,585 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:56:33,585 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:56:33,586 inlined from ‘OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)’ at ../../src/confsearch.cpp:135:18: 2023-09-13T17:56:33,600 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:33,602 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:56:33,603 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:56:33,604 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:56:33,605 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:56:33,606 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:56:33,607 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,608 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:56:33,609 inlined from ‘std::vector OpenBabel::GetHeavyAtomCoords(const OBMol*, const std::vector&)’ at ../../src/confsearch.cpp:284:27: 2023-09-13T17:56:33,610 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:33,611 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:56:33,612 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:56:33,613 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:56:33,614 inlined from ‘std::vector OpenBabel::OBDiversePoses::GetHeavyAtomCoords(const std::vector&)’ at ../../src/confsearch.cpp:269:29: 2023-09-13T17:56:33,615 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:33,616 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:56:33,618 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:56:33,619 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::pair >, double>&}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’: 2023-09-13T17:56:33,620 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, double> >::iterator’ changed in GCC 7.1 2023-09-13T17:56:33,621 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:56:33,622 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,622 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:56:33,623 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:56:33,624 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair >, double>}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’: 2023-09-13T17:56:33,626 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, double> >::iterator’ changed in GCC 7.1 2023-09-13T17:56:33,630 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:56:33,631 inlined from ‘bool OpenBabel::OBDiversePoses::AddPose(std::vector, double)’ at ../../src/confsearch.cpp:209:36: 2023-09-13T17:56:33,633 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:33,634 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:56:33,635 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:56:33,636 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >, double>}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’, 2023-09-13T17:56:33,637 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:33,638 inlined from ‘bool OpenBabel::OBDiversePoses::AddPose(std::vector, double)’ at ../../src/confsearch.cpp:224:30: 2023-09-13T17:56:33,639 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-13T17:56:33,640 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:33,641 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,650 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:56:33,652 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:33,652 inlined from ‘bool OpenBabel::OBDiversePoses::AddPose(double*, double)’ at ../../src/confsearch.cpp:151:24: 2023-09-13T17:56:33,653 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:33,654 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:33,655 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,656 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:56:33,657 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:56:33,658 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:56:33,659 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,660 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter, double>&, const pair, double>&)>]’: 2023-09-13T17:56:33,660 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-13T17:56:33,661 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2023-09-13T17:56:33,662 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,663 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’: 2023-09-13T17:56:33,664 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-13T17:56:33,666 1802 | __insertion_sort(_RandomAccessIterator __first, 2023-09-13T17:56:33,666 | ^~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,667 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-13T17:56:33,668 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2023-09-13T17:56:33,669 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Distance = int; _Tp = pair, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’: 2023-09-13T17:56:33,671 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-13T17:56:33,672 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2023-09-13T17:56:33,673 | ^~~~~~~~~~~~~ 2023-09-13T17:56:33,687 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’: 2023-09-13T17:56:33,688 /usr/include/c++/12/bits/stl_heap.h:340:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-13T17:56:33,689 340 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, 2023-09-13T17:56:33,690 | ^~~~~~~~~~~ 2023-09-13T17:56:33,691 /usr/include/c++/12/bits/stl_heap.h:340:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-13T17:56:33,692 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’: 2023-09-13T17:56:33,693 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-13T17:56:33,695 1908 | __introsort_loop(_RandomAccessIterator __first, 2023-09-13T17:56:33,696 | ^~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,697 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-13T17:56:33,698 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-13T17:56:33,699 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2023-09-13T17:56:33,700 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,701 In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’, 2023-09-13T17:56:33,702 inlined from ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1900:25, 2023-09-13T17:56:33,703 inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1916:27: 2023-09-13T17:56:33,705 /usr/include/c++/12/bits/stl_algo.h:1629:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-13T17:56:33,706 1629 | std::__make_heap(__first, __middle, __comp); 2023-09-13T17:56:33,706 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,707 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’, 2023-09-13T17:56:33,708 inlined from ‘void OpenBabel::UpdateConformersFromTree(OBMol*, std::vector&, OBDiversePoses*, bool)’ at ../../src/confsearch.cpp:298:22: 2023-09-13T17:56:33,709 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-13T17:56:33,710 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:56:33,711 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:56:33,712 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’, 2023-09-13T17:56:33,713 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = bool (*)(const pair, double>&, const pair, double>&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:56:33,714 inlined from ‘void OpenBabel::UpdateConformersFromTree(OBMol*, std::vector&, OBDiversePoses*, bool)’ at ../../src/confsearch.cpp:301:7: 2023-09-13T17:56:33,715 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-13T17:56:33,716 1937 | std::__introsort_loop(__first, __last, 2023-09-13T17:56:33,717 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,718 1938 | std::__lg(__last - __first) * 2, 2023-09-13T17:56:33,719 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,721 1939 | __comp); 2023-09-13T17:56:33,722 | ~~~~~~~ 2023-09-13T17:56:33,722 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’, 2023-09-13T17:56:33,723 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2023-09-13T17:56:33,724 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = bool (*)(const pair, double>&, const pair, double>&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:56:33,725 inlined from ‘void OpenBabel::UpdateConformersFromTree(OBMol*, std::vector&, OBDiversePoses*, bool)’ at ../../src/confsearch.cpp:301:7: 2023-09-13T17:56:33,730 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-13T17:56:33,731 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2023-09-13T17:56:33,732 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,733 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-13T17:56:33,734 1854 | std::__insertion_sort(__first, __last, __comp); 2023-09-13T17:56:33,735 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,737 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’, 2023-09-13T17:56:33,738 inlined from ‘void OpenBabel::UpdateConformersFromTree(OBMol*, std::vector&, OBDiversePoses*, bool)’ at ../../src/confsearch.cpp:313:25: 2023-09-13T17:56:33,739 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-13T17:56:33,740 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:56:33,741 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:56:33,742 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:56:33,743 inlined from ‘void OpenBabel::UpdateConformersFromTree(OBMol*, std::vector&, OBDiversePoses*, bool)’ at ../../src/confsearch.cpp:321:23: 2023-09-13T17:56:33,744 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:33,744 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:56:33,745 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:56:33,746 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:56:33,748 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:33,749 inlined from ‘int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)’ at ../../src/confsearch.cpp:350:26: 2023-09-13T17:56:33,750 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:33,750 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:33,751 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:33,752 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:56:33,753 inlined from ‘int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)’ at ../../src/confsearch.cpp:375:24: 2023-09-13T17:56:33,754 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:33,755 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:56:33,756 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:56:36,065 [106/533] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o 2023-09-13T17:56:40,421 [107/533] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.cpp.o 2023-09-13T17:56:40,422 In file included from ../../include/openbabel/forcefield.h:28, 2023-09-13T17:56:40,423 from ../../src/conformersearch.cpp:22: 2023-09-13T17:56:40,424 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:56:40,425 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:56:40,426 | ^~~~~~~~~~~~~~~ 2023-09-13T17:56:40,427 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-13T17:56:40,428 from /usr/include/c++/12/vector:66, 2023-09-13T17:56:40,429 from ../../include/openbabel/mol.h:44, 2023-09-13T17:56:40,430 from ../../include/openbabel/conformersearch.h:24, 2023-09-13T17:56:40,431 from ../../src/conformersearch.cpp:20: 2023-09-13T17:56:40,432 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:56:40,433 131 | struct binary_function 2023-09-13T17:56:40,434 | ^~~~~~~~~~~~~~~ 2023-09-13T17:56:40,435 In file included from /usr/include/c++/12/algorithm:61, 2023-09-13T17:56:40,436 from /usr/include/eigen3/Eigen/Core:95, 2023-09-13T17:56:40,437 from ../../include/openbabel/math/align.h:26, 2023-09-13T17:56:40,438 from ../../src/conformersearch.cpp:21: 2023-09-13T17:56:40,439 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: 2023-09-13T17:56:40,440 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,441 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2023-09-13T17:56:40,442 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,443 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2023-09-13T17:56:40,444 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,445 1802 | __insertion_sort(_RandomAccessIterator __first, 2023-09-13T17:56:40,446 | ^~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,446 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,447 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: 2023-09-13T17:56:40,448 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,449 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2023-09-13T17:56:40,450 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,450 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2023-09-13T17:56:40,451 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,452 1802 | __insertion_sort(_RandomAccessIterator __first, 2023-09-13T17:56:40,453 | ^~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,454 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,455 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2023-09-13T17:56:40,456 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = OpenBabel::ConformerScore; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2023-09-13T17:56:40,457 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,458 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2023-09-13T17:56:40,459 | ^~~~~~~~~~~~~ 2023-09-13T17:56:40,460 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = OpenBabel::ConformerScore; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2023-09-13T17:56:40,461 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,462 In file included from /usr/include/c++/12/vector:70: 2023-09-13T17:56:40,464 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:56:40,464 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:56:40,466 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:56:40,480 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,481 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:56:40,482 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:56:40,483 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:56:40,484 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:40,486 inlined from ‘virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const OpenBabel::RotorKeys&, const std::vector&)’ at ../../src/conformersearch.cpp:259:19: 2023-09-13T17:56:40,487 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,488 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:40,489 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,490 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:56:40,491 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:40,492 inlined from ‘virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const OpenBabel::RotorKeys&, const std::vector&)’ at ../../src/conformersearch.cpp:272:21: 2023-09-13T17:56:40,493 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,494 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:40,495 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,496 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:56:40,497 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:40,498 inlined from ‘virtual double OpenBabel::OBRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const OpenBabel::RotorKeys&, const std::vector&)’ at ../../src/conformersearch.cpp:115:19: 2023-09-13T17:56:40,499 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,501 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:40,502 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,503 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:56:40,503 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:40,504 inlined from ‘virtual double OpenBabel::OBRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const OpenBabel::RotorKeys&, const std::vector&)’ at ../../src/conformersearch.cpp:128:21: 2023-09-13T17:56:40,505 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,506 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:40,507 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,508 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::ConformerScore}; _Tp = OpenBabel::ConformerScore; _Alloc = std::allocator]’: 2023-09-13T17:56:40,509 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:56:40,510 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:56:40,511 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,512 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2023-09-13T17:56:40,513 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,513 1908 | __introsort_loop(_RandomAccessIterator __first, 2023-09-13T17:56:40,514 | ^~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,515 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,530 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,531 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2023-09-13T17:56:40,532 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,533 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2023-09-13T17:56:40,534 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,535 1908 | __introsort_loop(_RandomAccessIterator __first, 2023-09-13T17:56:40,536 | ^~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,537 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,538 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,538 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2023-09-13T17:56:40,539 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,540 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::ConformerScore}; _Tp = OpenBabel::ConformerScore; _Alloc = std::allocator]’, 2023-09-13T17:56:40,541 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::ConformerScore; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:40,542 inlined from ‘double OpenBabel::OBConformerSearch::MakeSelection()’ at ../../src/conformersearch.cpp:531:33: 2023-09-13T17:56:40,543 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,544 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:40,545 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,546 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, 2023-09-13T17:56:40,546 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = OpenBabel::CompareConformerHighScore]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:56:40,548 inlined from ‘double OpenBabel::OBConformerSearch::MakeSelection()’ at ../../src/conformersearch.cpp:540:16: 2023-09-13T17:56:40,549 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,550 1937 | std::__introsort_loop(__first, __last, 2023-09-13T17:56:40,551 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,552 1938 | std::__lg(__last - __first) * 2, 2023-09-13T17:56:40,552 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,553 1939 | __comp); 2023-09-13T17:56:40,554 | ~~~~~~~ 2023-09-13T17:56:40,555 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, 2023-09-13T17:56:40,556 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2023-09-13T17:56:40,557 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = OpenBabel::CompareConformerHighScore]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:56:40,558 inlined from ‘double OpenBabel::OBConformerSearch::MakeSelection()’ at ../../src/conformersearch.cpp:540:16: 2023-09-13T17:56:40,559 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,560 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2023-09-13T17:56:40,561 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,562 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,563 1854 | std::__insertion_sort(__first, __last, __comp); 2023-09-13T17:56:40,564 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,565 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, 2023-09-13T17:56:40,565 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = OpenBabel::CompareConformerLowScore]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:56:40,566 inlined from ‘double OpenBabel::OBConformerSearch::MakeSelection()’ at ../../src/conformersearch.cpp:542:16: 2023-09-13T17:56:40,568 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,569 1937 | std::__introsort_loop(__first, __last, 2023-09-13T17:56:40,570 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,571 1938 | std::__lg(__last - __first) * 2, 2023-09-13T17:56:40,572 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,573 1939 | __comp); 2023-09-13T17:56:40,575 | ~~~~~~~ 2023-09-13T17:56:40,575 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, 2023-09-13T17:56:40,590 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2023-09-13T17:56:40,591 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = OpenBabel::CompareConformerLowScore]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:56:40,592 inlined from ‘double OpenBabel::OBConformerSearch::MakeSelection()’ at ../../src/conformersearch.cpp:542:16: 2023-09-13T17:56:40,594 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,594 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2023-09-13T17:56:40,595 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,596 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,597 1854 | std::__insertion_sort(__first, __last, __comp); 2023-09-13T17:56:40,598 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,599 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::ConformerScore}; _Tp = OpenBabel::ConformerScore; _Alloc = std::allocator]’, 2023-09-13T17:56:40,600 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::ConformerScore; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:40,601 inlined from ‘int OpenBabel::OBConformerSearch::score_population()’ at ../../src/conformersearch.cpp:942:35: 2023-09-13T17:56:40,602 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,603 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:40,603 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,604 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, 2023-09-13T17:56:40,606 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = OpenBabel::CompareConformerHighScore]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:56:40,607 inlined from ‘int OpenBabel::OBConformerSearch::score_population()’ at ../../src/conformersearch.cpp:951:16: 2023-09-13T17:56:40,608 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,609 1937 | std::__introsort_loop(__first, __last, 2023-09-13T17:56:40,610 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,611 1938 | std::__lg(__last - __first) * 2, 2023-09-13T17:56:40,612 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,613 1939 | __comp); 2023-09-13T17:56:40,614 | ~~~~~~~ 2023-09-13T17:56:40,615 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, 2023-09-13T17:56:40,616 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2023-09-13T17:56:40,617 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = OpenBabel::CompareConformerHighScore]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:56:40,618 inlined from ‘int OpenBabel::OBConformerSearch::score_population()’ at ../../src/conformersearch.cpp:951:16: 2023-09-13T17:56:40,619 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,620 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2023-09-13T17:56:40,621 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,622 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,623 1854 | std::__insertion_sort(__first, __last, __comp); 2023-09-13T17:56:40,624 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,624 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, 2023-09-13T17:56:40,625 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = OpenBabel::CompareConformerLowScore]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:56:40,626 inlined from ‘int OpenBabel::OBConformerSearch::score_population()’ at ../../src/conformersearch.cpp:953:16: 2023-09-13T17:56:40,627 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,628 1937 | std::__introsort_loop(__first, __last, 2023-09-13T17:56:40,629 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,640 1938 | std::__lg(__last - __first) * 2, 2023-09-13T17:56:40,641 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,642 1939 | __comp); 2023-09-13T17:56:40,643 | ~~~~~~~ 2023-09-13T17:56:40,644 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, 2023-09-13T17:56:40,645 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2023-09-13T17:56:40,646 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = OpenBabel::CompareConformerLowScore]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:56:40,647 inlined from ‘int OpenBabel::OBConformerSearch::score_population()’ at ../../src/conformersearch.cpp:953:16: 2023-09-13T17:56:40,648 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,649 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2023-09-13T17:56:40,650 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,651 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,651 1854 | std::__insertion_sort(__first, __last, __comp); 2023-09-13T17:56:40,652 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,653 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:56:40,654 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:56:40,655 inlined from ‘int OpenBabel::OBConformerSearch::score_population()’ at ../../src/conformersearch.cpp:961:27: 2023-09-13T17:56:40,656 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,657 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:56:40,658 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:56:40,659 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:56:40,660 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:56:40,661 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:56:40,662 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,663 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:56:40,664 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:40,665 inlined from ‘int OpenBabel::OBConformerSearch::share_fitness()’ at ../../src/conformersearch.cpp:994:34: 2023-09-13T17:56:40,666 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,667 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:40,668 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,669 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:56:40,670 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:40,671 inlined from ‘int OpenBabel::OBConformerSearch::share_fitness()’ at ../../src/conformersearch.cpp:997:34: 2023-09-13T17:56:40,672 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:56:40,673 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:40,674 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:40,675 In file included from /usr/include/c++/12/map:60, 2023-09-13T17:56:40,676 from ../../include/openbabel/mol.h:46: 2023-09-13T17:56:40,677 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::vector; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2023-09-13T17:56:40,678 /usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2023-09-13T17:56:40,679 2209 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2023-09-13T17:56:40,680 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:41,043 [108/533] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o 2023-09-13T17:56:41,043 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:56:41,044 from ../../include/openbabel/mol.h:44, 2023-09-13T17:56:41,045 from ../../src/depict/depict.cpp:20: 2023-09-13T17:56:41,046 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: 2023-09-13T17:56:41,047 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-13T17:56:41,048 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:56:41,049 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:41,050 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: 2023-09-13T17:56:41,051 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-13T17:56:41,052 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-13T17:56:41,053 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:41,054 inlined from ‘virtual void OpenBabel::OBDepictPrivateBallAndStick::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)’ at ../../src/depict/depict.cpp:1127:21: 2023-09-13T17:56:41,055 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,056 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:41,057 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:41,058 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-13T17:56:41,059 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:41,061 inlined from ‘virtual void OpenBabel::OBDepictPrivateBallAndStick::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)’ at ../../src/depict/depict.cpp:1128:21: 2023-09-13T17:56:41,062 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,062 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:41,063 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:41,064 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-13T17:56:41,065 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:41,066 inlined from ‘virtual void OpenBabel::OBDepictPrivateBallAndStick::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)’ at ../../src/depict/depict.cpp:1130:21: 2023-09-13T17:56:41,067 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,068 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:41,069 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:41,070 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-13T17:56:41,071 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:41,072 inlined from ‘virtual void OpenBabel::OBDepictPrivate::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)’ at ../../src/depict/depict.cpp:750:21: 2023-09-13T17:56:41,073 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,074 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:41,076 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:41,078 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-13T17:56:41,079 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:41,080 inlined from ‘virtual void OpenBabel::OBDepictPrivate::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)’ at ../../src/depict/depict.cpp:751:21: 2023-09-13T17:56:41,081 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,082 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:41,083 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:41,084 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-13T17:56:41,085 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:56:41,086 inlined from ‘virtual void OpenBabel::OBDepictPrivate::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)’ at ../../src/depict/depict.cpp:753:21: 2023-09-13T17:56:41,087 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,088 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:56:41,088 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:41,090 In file included from /usr/include/c++/12/algorithm:61, 2023-09-13T17:56:41,091 from ../../include/openbabel/ring.h:24, 2023-09-13T17:56:41,100 from ../../src/depict/depict.cpp:22: 2023-09-13T17:56:41,102 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-13T17:56:41,103 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,105 1802 | __insertion_sort(_RandomAccessIterator __first, 2023-09-13T17:56:41,106 | ^~~~~~~~~~~~~~~~ 2023-09-13T17:56:41,107 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,108 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-13T17:56:41,109 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,110 82 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, 2023-09-13T17:56:41,111 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:41,112 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,113 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,114 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,115 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2023-09-13T17:56:41,116 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-13T17:56:41,117 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,118 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2023-09-13T17:56:41,119 | ^~~~~~~~~~~~~ 2023-09-13T17:56:41,120 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-13T17:56:41,121 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,122 1908 | __introsort_loop(_RandomAccessIterator __first, 2023-09-13T17:56:41,123 | ^~~~~~~~~~~~~~~~ 2023-09-13T17:56:41,124 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,125 In function ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-13T17:56:41,126 inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1921:38: 2023-09-13T17:56:41,127 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,128 1887 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2023-09-13T17:56:41,129 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:41,130 1888 | __comp); 2023-09-13T17:56:41,131 | ~~~~~~~ 2023-09-13T17:56:41,132 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,133 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-13T17:56:41,134 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,135 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2023-09-13T17:56:41,136 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:41,137 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:56:41,138 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-13T17:56:41,139 inlined from ‘bool OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)’ at ../../src/depict/depict.cpp:553:31: 2023-09-13T17:56:41,139 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,140 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:56:41,141 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:56:41,150 In function ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-13T17:56:41,151 inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1921:38, 2023-09-13T17:56:41,152 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1937:25, 2023-09-13T17:56:41,153 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(const pair&, const pair&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:56:41,154 inlined from ‘bool OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)’ at ../../src/depict/depict.cpp:555:9: 2023-09-13T17:56:41,156 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,157 1887 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2023-09-13T17:56:41,158 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:41,159 1888 | __comp); 2023-09-13T17:56:41,160 | ~~~~~~~ 2023-09-13T17:56:41,161 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,162 In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-13T17:56:41,163 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1937:25, 2023-09-13T17:56:41,164 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(const pair&, const pair&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:56:41,164 inlined from ‘bool OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)’ at ../../src/depict/depict.cpp:555:9: 2023-09-13T17:56:41,165 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,166 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2023-09-13T17:56:41,167 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:41,169 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-13T17:56:41,170 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2023-09-13T17:56:41,171 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(const pair&, const pair&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-13T17:56:41,172 inlined from ‘bool OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)’ at ../../src/depict/depict.cpp:555:9: 2023-09-13T17:56:41,173 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,174 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2023-09-13T17:56:41,174 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:41,175 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-13T17:56:41,176 1854 | std::__insertion_sort(__first, __last, __comp); 2023-09-13T17:56:41,177 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:56:41,934 [109/533] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o 2023-09-13T17:56:42,661 [110/533] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o 2023-09-13T17:56:44,886 [111/533] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o 2023-09-13T17:56:45,173 [112/533] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o 2023-09-13T17:56:50,915 [113/533] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o 2023-09-13T17:56:51,046 [114/533] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o 2023-09-13T17:56:52,657 [115/533] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o 2023-09-13T17:56:58,086 [116/533] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o 2023-09-13T17:56:58,087 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:56:58,088 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:56:58,089 from ../../src/stereo/gen3dstereohelper.cpp:29: 2023-09-13T17:56:58,090 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:56:58,091 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:56:58,092 | ^~~~~~~~~~~~~~~ 2023-09-13T17:56:58,093 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:56:58,094 from ../../src/stereo/gen3dstereohelper.h:28, 2023-09-13T17:56:58,095 from ../../src/stereo/gen3dstereohelper.cpp:25: 2023-09-13T17:56:58,097 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:56:58,098 131 | struct binary_function 2023-09-13T17:56:58,099 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:00,696 [117/533] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o 2023-09-13T17:57:03,167 [118/533] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o 2023-09-13T17:57:03,168 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:03,170 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:03,171 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:57:03,172 from ../../src/formats/cacaoformat.cpp:17: 2023-09-13T17:57:03,173 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:03,174 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:03,175 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:03,176 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:57:03,178 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:57:03,179 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:57:03,180 from /usr/include/c++/12/ios:42, 2023-09-13T17:57:03,181 from /usr/include/c++/12/ostream:38, 2023-09-13T17:57:03,182 from /usr/include/c++/12/iostream:39, 2023-09-13T17:57:03,183 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:57:03,185 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:03,186 131 | struct binary_function 2023-09-13T17:57:03,187 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:06,907 [119/533] Building CXX object src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o 2023-09-13T17:57:06,908 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:06,909 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:06,910 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:57:06,911 from ../../src/formats/balstformat.cpp:17: 2023-09-13T17:57:06,912 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:06,913 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:06,914 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:06,914 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:57:06,915 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:57:06,916 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:57:06,917 from /usr/include/c++/12/ios:42, 2023-09-13T17:57:06,918 from /usr/include/c++/12/ostream:38, 2023-09-13T17:57:06,919 from /usr/include/c++/12/iostream:39, 2023-09-13T17:57:06,920 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:57:06,921 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:06,922 131 | struct binary_function 2023-09-13T17:57:06,923 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:10,541 [120/533] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o 2023-09-13T17:57:10,542 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:10,543 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:10,544 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:57:10,545 from ../../src/formats/thermoformat.cpp:23: 2023-09-13T17:57:10,546 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:10,547 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:10,548 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:10,550 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:57:10,550 from ../../src/formats/thermoformat.cpp:21: 2023-09-13T17:57:10,551 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:10,552 131 | struct binary_function 2023-09-13T17:57:10,553 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:11,237 [121/533] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o 2023-09-13T17:57:11,238 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:11,238 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:11,240 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:57:11,248 from ../../src/formats/chem3dformat.cpp:18: 2023-09-13T17:57:11,249 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:11,250 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:11,251 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:11,252 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:57:11,253 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:57:11,253 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:57:11,254 from /usr/include/c++/12/ios:42, 2023-09-13T17:57:11,255 from /usr/include/c++/12/ostream:38, 2023-09-13T17:57:11,256 from ../../include/openbabel/math/matrix3x3.h:24, 2023-09-13T17:57:11,257 from ../../src/formats/chem3dformat.cpp:17: 2023-09-13T17:57:11,258 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:11,258 131 | struct binary_function 2023-09-13T17:57:11,259 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:15,502 [122/533] Building CXX object src/CMakeFiles/openbabel.dir/math/align.cpp.o 2023-09-13T17:57:15,503 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:57:15,504 from ../../src/math/align.cpp:21: 2023-09-13T17:57:15,505 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:57:15,506 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:57:15,507 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:57:15,508 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:15,509 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:57:15,510 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:15,511 inlined from ‘void OpenBabel::OBAlign::SetTargetMol(const OpenBabel::OBMol&)’ at ../../src/math/align.cpp:146:36: 2023-09-13T17:57:15,513 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:15,514 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:15,515 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:15,516 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:15,517 inlined from ‘void OpenBabel::OBAlign::SetRefMol(const OpenBabel::OBMol&)’ at ../../src/math/align.cpp:125:33: 2023-09-13T17:57:15,518 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:15,519 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:15,521 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:15,522 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:57:15,523 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:57:15,524 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:57:15,525 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:15,526 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:15,527 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:15,528 inlined from ‘std::vector OpenBabel::OBAlign::GetAlignment()’ at ../../src/math/align.cpp:394:33: 2023-09-13T17:57:15,529 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:15,530 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:15,531 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:15,532 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:15,533 inlined from ‘std::vector OpenBabel::OBAlign::GetAlignment()’ at ../../src/math/align.cpp:400:32: 2023-09-13T17:57:15,534 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:15,535 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:15,536 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:15,537 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:15,537 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:15,538 inlined from ‘std::vector OpenBabel::OBAlign::GetAlignment()’ at ../../src/math/align.cpp:417:33: 2023-09-13T17:57:15,539 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:15,540 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:15,541 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:17,905 [123/533] Building CXX object src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o 2023-09-13T17:57:17,906 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:17,907 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:17,908 from ../../src/formats/APIInterface.cpp:19: 2023-09-13T17:57:17,909 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:17,910 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:17,912 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:17,913 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:57:17,914 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:57:17,915 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:57:17,916 from /usr/include/c++/12/ios:42, 2023-09-13T17:57:17,918 from /usr/include/c++/12/ostream:38, 2023-09-13T17:57:17,919 from /usr/include/c++/12/iostream:39, 2023-09-13T17:57:17,920 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:57:17,923 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:17,924 131 | struct binary_function 2023-09-13T17:57:17,925 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:24,237 [124/533] Building CXX object src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o 2023-09-13T17:57:24,238 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:24,239 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:24,240 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:57:24,241 from ../../src/formats/lpmdformat.cpp:15: 2023-09-13T17:57:24,242 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:24,243 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:24,244 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:24,244 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:57:24,245 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:57:24,246 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:57:24,247 from /usr/include/c++/12/ios:42, 2023-09-13T17:57:24,248 from /usr/include/c++/12/ostream:38, 2023-09-13T17:57:24,249 from /usr/include/c++/12/iostream:39, 2023-09-13T17:57:24,250 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:57:24,251 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:24,252 131 | struct binary_function 2023-09-13T17:57:24,253 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:24,254 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:57:24,255 from ../../include/openbabel/obconversion.h:30: 2023-09-13T17:57:24,255 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:57:24,256 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:57:24,258 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:57:24,258 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:24,259 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:57:24,260 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:24,261 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:24,263 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:24,264 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:24,266 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:24,267 inlined from ‘virtual bool OpenBabel::LpmdFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/lpmdformat.cpp:306:14: 2023-09-13T17:57:24,269 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:24,270 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:24,271 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:24,273 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:24,274 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:24,275 inlined from ‘virtual bool OpenBabel::LpmdFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/lpmdformat.cpp:307:14: 2023-09-13T17:57:24,276 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:24,277 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:24,279 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:24,290 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:24,291 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:24,292 inlined from ‘virtual bool OpenBabel::LpmdFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/lpmdformat.cpp:308:14: 2023-09-13T17:57:24,293 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:24,294 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:24,295 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:24,296 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:24,297 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:24,297 inlined from ‘virtual bool OpenBabel::LpmdFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/lpmdformat.cpp:363:18: 2023-09-13T17:57:24,298 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:24,299 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:24,300 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:24,301 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:24,302 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:24,303 inlined from ‘virtual bool OpenBabel::LpmdFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/lpmdformat.cpp:364:18: 2023-09-13T17:57:24,304 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:24,305 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:24,306 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:24,307 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:24,308 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:24,309 inlined from ‘virtual bool OpenBabel::LpmdFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/lpmdformat.cpp:365:18: 2023-09-13T17:57:24,310 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:24,311 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:24,312 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:25,347 [125/533] Building CXX object src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o 2023-09-13T17:57:25,348 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:25,349 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:25,350 from ../../src/formats/pointcloudformat.cpp:30: 2023-09-13T17:57:25,351 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:25,352 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:25,353 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:25,354 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-13T17:57:25,355 from /usr/include/c++/12/vector:66, 2023-09-13T17:57:25,356 from ../../include/openbabel/mol.h:44, 2023-09-13T17:57:25,357 from ../../src/formats/pointcloudformat.cpp:28: 2023-09-13T17:57:25,358 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:25,359 131 | struct binary_function 2023-09-13T17:57:25,360 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:25,361 In file included from /usr/include/c++/12/vector:70: 2023-09-13T17:57:25,362 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:57:25,363 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:57:25,364 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:57:25,365 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:25,366 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:57:25,367 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:25,368 inlined from ‘bool OpenBabel::conditional_add(std::vector&, vector3, double)’ at ../../src/formats/pointcloudformat.cpp:159:19: 2023-09-13T17:57:25,369 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:25,370 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:25,371 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:25,372 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:57:25,373 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:57:25,374 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:57:25,375 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:25,376 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:57:25,377 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:57:25,378 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:25,379 inlined from ‘virtual bool OpenBabel::PointCloudFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/pointcloudformat.cpp:205:63: 2023-09-13T17:57:25,380 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:25,381 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:25,382 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:25,383 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:25,385 inlined from ‘virtual bool OpenBabel::PointCloudFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/pointcloudformat.cpp:215:59: 2023-09-13T17:57:25,386 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:25,388 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:25,389 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:25,401 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:25,401 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:25,403 inlined from ‘virtual bool OpenBabel::PointCloudFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/pointcloudformat.cpp:220:68: 2023-09-13T17:57:25,404 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:25,405 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:25,406 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:25,407 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:25,408 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:25,409 inlined from ‘virtual bool OpenBabel::PointCloudFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/pointcloudformat.cpp:222:29: 2023-09-13T17:57:25,410 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:25,411 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:25,413 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:25,414 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:25,415 inlined from ‘virtual bool OpenBabel::PointCloudFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/pointcloudformat.cpp:269:38: 2023-09-13T17:57:25,416 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:25,417 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:25,418 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:27,152 [126/533] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o 2023-09-13T17:57:27,153 ../../src/stereo/perception.cpp: In function ‘void OpenBabel::StereoRefToImplicit(OBMol&, OBStereo::Ref)’: 2023-09-13T17:57:27,154 ../../src/stereo/perception.cpp:2973:16: warning: ‘template class std::binder1st’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-13T17:57:27,155 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); 2023-09-13T17:57:27,156 | ^~~~~~~~~ 2023-09-13T17:57:27,157 In file included from /usr/include/c++/12/bits/stl_function.h:1438, 2023-09-13T17:57:27,158 from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-13T17:57:27,159 from /usr/include/c++/12/vector:66, 2023-09-13T17:57:27,160 from ../../include/openbabel/base.h:25, 2023-09-13T17:57:27,161 from ../../include/openbabel/stereo/stereo.h:27, 2023-09-13T17:57:27,162 from ../../include/openbabel/stereo/tetranonplanar.h:27, 2023-09-13T17:57:27,164 from ../../include/openbabel/stereo/tetrahedral.h:27, 2023-09-13T17:57:27,165 from ../../src/stereo/perception.cpp:26: 2023-09-13T17:57:27,166 /usr/include/c++/12/backward/binders.h:108:11: note: declared here 2023-09-13T17:57:27,167 108 | class binder1st 2023-09-13T17:57:27,168 | ^~~~~~~~~ 2023-09-13T17:57:27,169 ../../src/stereo/perception.cpp:2973:88: warning: ‘std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-13T17:57:27,170 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); 2023-09-13T17:57:27,171 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:27,172 /usr/include/c++/12/backward/binders.h:136:5: note: declared here 2023-09-13T17:57:27,173 136 | bind1st(const _Operation& __fn, const _Tp& __x) 2023-09-13T17:57:27,174 | ^~~~~~~ 2023-09-13T17:57:27,175 ../../src/stereo/perception.cpp: In function ‘void OpenBabel::ImplicitRefToStereo(OBMol&, OBStereo::Ref, OBStereo::Ref)’: 2023-09-13T17:57:27,176 ../../src/stereo/perception.cpp:3005:16: warning: ‘template class std::binder1st’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-13T17:57:27,177 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); 2023-09-13T17:57:27,178 | ^~~~~~~~~ 2023-09-13T17:57:27,179 /usr/include/c++/12/backward/binders.h:108:11: note: declared here 2023-09-13T17:57:27,181 108 | class binder1st 2023-09-13T17:57:27,182 | ^~~~~~~~~ 2023-09-13T17:57:27,183 ../../src/stereo/perception.cpp:3005:93: warning: ‘std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-13T17:57:27,184 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); 2023-09-13T17:57:27,184 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:27,185 /usr/include/c++/12/backward/binders.h:136:5: note: declared here 2023-09-13T17:57:27,186 136 | bind1st(const _Operation& __fn, const _Tp& __x) 2023-09-13T17:57:27,187 | ^~~~~~~ 2023-09-13T17:57:27,188 In file included from /usr/include/c++/12/vector:70: 2023-09-13T17:57:27,189 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:57:27,190 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:57:27,191 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:57:27,192 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:27,192 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:57:27,193 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:27,194 inlined from ‘std::vector OpenBabel::CisTransFrom2D(OBMol*, const OBStereoUnitSet&, const std::map*, bool)’ at ../../src/stereo/perception.cpp:2702:27: 2023-09-13T17:57:27,200 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:27,201 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:27,204 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:27,205 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:27,207 inlined from ‘std::vector OpenBabel::CisTransFrom2D(OBMol*, const OBStereoUnitSet&, const std::map*, bool)’ at ../../src/stereo/perception.cpp:2716:27: 2023-09-13T17:57:27,208 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:27,209 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:27,220 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:27,223 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:27,224 inlined from ‘std::vector OpenBabel::CisTransFrom2D(OBMol*, const OBStereoUnitSet&, const std::map*, bool)’ at ../../src/stereo/perception.cpp:2724:27: 2023-09-13T17:57:27,225 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:27,226 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:27,227 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:27,229 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:27,230 inlined from ‘std::vector OpenBabel::CisTransFrom2D(OBMol*, const OBStereoUnitSet&, const std::map*, bool)’ at ../../src/stereo/perception.cpp:2738:27: 2023-09-13T17:57:27,231 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:27,231 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:27,232 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:27,233 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:57:27,234 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:57:27,235 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:57:27,236 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:27,237 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:27,238 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:27,239 inlined from ‘std::vector OpenBabel::TetrahedralFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at ../../src/stereo/perception.cpp:2147:28: 2023-09-13T17:57:27,240 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:27,241 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:27,242 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:27,243 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:27,244 inlined from ‘std::vector OpenBabel::TetrahedralFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at ../../src/stereo/perception.cpp:2149:28: 2023-09-13T17:57:27,245 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:27,246 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:27,247 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:27,248 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:27,250 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:27,251 inlined from ‘std::vector OpenBabel::TetrahedralFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at ../../src/stereo/perception.cpp:2153:30: 2023-09-13T17:57:27,252 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:27,253 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:27,254 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:27,265 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:27,266 inlined from ‘std::vector OpenBabel::TetrahedralFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at ../../src/stereo/perception.cpp:2155:30: 2023-09-13T17:57:27,267 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:27,268 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:27,269 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:27,270 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:27,271 inlined from ‘std::vector OpenBabel::TetrahedralFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at ../../src/stereo/perception.cpp:2180:28: 2023-09-13T17:57:27,272 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:27,273 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:27,274 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:27,275 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:27,276 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:27,277 inlined from ‘std::vector OpenBabel::CisTransFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at ../../src/stereo/perception.cpp:2229:29: 2023-09-13T17:57:27,278 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:27,279 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:27,280 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:27,281 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:27,282 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:27,283 inlined from ‘std::vector OpenBabel::CisTransFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at ../../src/stereo/perception.cpp:2231:29: 2023-09-13T17:57:27,284 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:27,285 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:27,286 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:27,287 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:27,288 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:27,289 inlined from ‘std::vector OpenBabel::CisTransFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at ../../src/stereo/perception.cpp:2239:29: 2023-09-13T17:57:27,290 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:27,291 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:27,292 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:27,293 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:27,294 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:27,296 inlined from ‘std::vector OpenBabel::CisTransFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at ../../src/stereo/perception.cpp:2241:29: 2023-09-13T17:57:27,297 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:27,298 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:27,299 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:27,300 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:27,301 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:27,302 inlined from ‘std::vector OpenBabel::CisTransFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at ../../src/stereo/perception.cpp:2253:29: 2023-09-13T17:57:27,303 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:27,304 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:27,305 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:27,306 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:27,307 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:27,308 inlined from ‘std::vector OpenBabel::CisTransFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at ../../src/stereo/perception.cpp:2255:29: 2023-09-13T17:57:27,309 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:27,310 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:27,311 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:27,312 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:27,313 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:27,314 inlined from ‘std::vector OpenBabel::CisTransFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at ../../src/stereo/perception.cpp:2262:29: 2023-09-13T17:57:27,330 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:27,331 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:27,332 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:27,333 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:27,334 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:27,335 inlined from ‘std::vector OpenBabel::CisTransFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at ../../src/stereo/perception.cpp:2264:29: 2023-09-13T17:57:27,336 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:27,337 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:27,338 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:30,483 [127/533] Building CXX object src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o 2023-09-13T17:57:30,484 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:30,485 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:30,487 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:57:30,488 from ../../src/formats/mdffformat.cpp:17: 2023-09-13T17:57:30,489 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:30,490 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:30,491 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:30,492 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:57:30,493 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:57:30,494 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:57:30,495 from /usr/include/c++/12/ios:42, 2023-09-13T17:57:30,496 from /usr/include/c++/12/ostream:38, 2023-09-13T17:57:30,497 from /usr/include/c++/12/iostream:39, 2023-09-13T17:57:30,498 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:57:30,499 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:30,500 131 | struct binary_function 2023-09-13T17:57:30,501 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:30,502 In file included from /usr/include/c++/12/map:60, 2023-09-13T17:57:30,503 from ../../include/openbabel/obconversion.h:31: 2023-09-13T17:57:30,504 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2023-09-13T17:57:30,505 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2023-09-13T17:57:30,506 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2023-09-13T17:57:30,507 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:30,508 In file included from /usr/include/c++/12/map:61: 2023-09-13T17:57:30,508 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]’, 2023-09-13T17:57:30,509 inlined from ‘virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/mdffformat.cpp:472:23: 2023-09-13T17:57:30,510 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2023-09-13T17:57:30,511 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2023-09-13T17:57:30,512 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:30,513 512 | std::tuple(__k), 2023-09-13T17:57:30,514 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:30,515 513 | std::tuple<>()); 2023-09-13T17:57:30,516 | ~~~~~~~~~~~~~~~ 2023-09-13T17:57:30,517 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]’, 2023-09-13T17:57:30,518 inlined from ‘virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/mdffformat.cpp:474:26: 2023-09-13T17:57:30,519 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2023-09-13T17:57:30,520 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2023-09-13T17:57:30,522 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:30,522 512 | std::tuple(__k), 2023-09-13T17:57:30,523 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:30,524 513 | std::tuple<>()); 2023-09-13T17:57:30,525 | ~~~~~~~~~~~~~~~ 2023-09-13T17:57:30,526 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]’, 2023-09-13T17:57:30,526 inlined from ‘virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/mdffformat.cpp:475:25: 2023-09-13T17:57:30,527 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2023-09-13T17:57:30,528 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2023-09-13T17:57:30,529 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:30,530 512 | std::tuple(__k), 2023-09-13T17:57:30,540 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:30,541 513 | std::tuple<>()); 2023-09-13T17:57:30,543 | ~~~~~~~~~~~~~~~ 2023-09-13T17:57:30,544 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]’, 2023-09-13T17:57:30,545 inlined from ‘virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/mdffformat.cpp:507:53: 2023-09-13T17:57:30,547 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2023-09-13T17:57:30,548 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2023-09-13T17:57:30,549 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:30,551 512 | std::tuple(__k), 2023-09-13T17:57:30,552 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:30,553 513 | std::tuple<>()); 2023-09-13T17:57:30,557 | ~~~~~~~~~~~~~~~ 2023-09-13T17:57:31,132 [128/533] Building CXX object src/CMakeFiles/openbabel.dir/distgeom.cpp.o 2023-09-13T17:57:31,133 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:31,134 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:31,135 from ../../src/distgeom.cpp:38: 2023-09-13T17:57:31,136 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:31,137 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:31,138 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:31,139 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-13T17:57:31,140 from /usr/include/c++/12/vector:66, 2023-09-13T17:57:31,150 from ../../include/openbabel/mol.h:44, 2023-09-13T17:57:31,151 from ../../include/openbabel/distgeom.h:24, 2023-09-13T17:57:31,152 from ../../src/distgeom.cpp:22: 2023-09-13T17:57:31,153 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:31,154 131 | struct binary_function 2023-09-13T17:57:31,155 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:31,156 In file included from /usr/include/c++/12/vector:70: 2023-09-13T17:57:31,157 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::TetrahedralInfo&}; _Tp = OpenBabel::TetrahedralInfo; _Alloc = std::allocator]’: 2023-09-13T17:57:31,158 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:57:31,159 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:57:31,160 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:31,161 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:57:31,162 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::TetrahedralInfo; _Alloc = std::allocator]’, 2023-09-13T17:57:31,164 inlined from ‘bool OpenBabel::OBDistanceGeometry::Setup(const OpenBabel::OBMol&, bool)’ at ../../src/distgeom.cpp:203:28: 2023-09-13T17:57:31,165 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:31,166 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:31,167 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:31,173 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::TetrahedralInfo; _Alloc = std::allocator]’, 2023-09-13T17:57:31,174 inlined from ‘bool OpenBabel::OBDistanceGeometry::Setup(const OpenBabel::OBMol&, bool)’ at ../../src/distgeom.cpp:206:28: 2023-09-13T17:57:31,175 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:31,176 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:31,178 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:31,179 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::TetrahedralInfo; _Alloc = std::allocator]’, 2023-09-13T17:57:31,179 inlined from ‘bool OpenBabel::OBDistanceGeometry::Setup(const OpenBabel::OBMol&, bool)’ at ../../src/distgeom.cpp:228:30: 2023-09-13T17:57:31,181 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:31,182 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:31,183 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:32,324 [129/533] Linking CXX shared library lib/libopenbabel.so.7.0.0 2023-09-13T17:57:32,369 [130/533] Creating library symlink lib/libopenbabel.so.7 lib/libopenbabel.so 2023-09-13T17:57:32,979 [131/533] Linking CXX shared module lib/plugin_charges.so 2023-09-13T17:57:33,818 [132/533] Linking CXX shared module lib/plugin_forcefields.so 2023-09-13T17:57:34,532 [133/533] Linking CXX shared module lib/plugin_fingerprints.so 2023-09-13T17:57:35,083 [134/533] Linking CXX shared module lib/plugin_descriptors.so 2023-09-13T17:57:35,705 [135/533] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o 2023-09-13T17:57:35,706 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:35,706 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:35,707 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:57:35,708 from ../../src/formats/abinitformat.cpp:16: 2023-09-13T17:57:35,709 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:35,710 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:35,710 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:35,711 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:57:35,712 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:57:35,713 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:57:35,714 from /usr/include/c++/12/ios:42, 2023-09-13T17:57:35,715 from /usr/include/c++/12/ostream:38, 2023-09-13T17:57:35,716 from /usr/include/c++/12/iostream:39, 2023-09-13T17:57:35,717 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:57:35,718 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:35,719 131 | struct binary_function 2023-09-13T17:57:35,719 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:35,722 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:57:35,723 from ../../include/openbabel/obconversion.h:30: 2023-09-13T17:57:35,724 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:57:35,725 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:57:35,726 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:57:35,727 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:35,728 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:35,740 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:35,741 inlined from ‘virtual bool OpenBabel::ABINITFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/abinitformat.cpp:137:27: 2023-09-13T17:57:35,743 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:35,744 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:35,745 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:35,747 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:35,747 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:35,748 inlined from ‘virtual bool OpenBabel::ABINITFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/abinitformat.cpp:146:36: 2023-09-13T17:57:35,749 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:35,750 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:35,751 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:35,980 [136/533] Linking CXX shared module lib/plugin_ops.so 2023-09-13T17:57:36,082 [137/533] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o 2023-09-13T17:57:36,083 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:36,083 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:36,084 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:57:36,085 from ../../src/formats/bgfformat.cpp:17: 2023-09-13T17:57:36,085 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:36,086 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:36,087 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:36,088 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:57:36,089 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:57:36,090 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:57:36,091 from /usr/include/c++/12/ios:42, 2023-09-13T17:57:36,092 from /usr/include/c++/12/ostream:38, 2023-09-13T17:57:36,092 from /usr/include/c++/12/iostream:39, 2023-09-13T17:57:36,094 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:57:36,095 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:36,096 131 | struct binary_function 2023-09-13T17:57:36,097 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:37,611 [138/533] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o 2023-09-13T17:57:37,612 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:37,613 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:37,614 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:57:37,615 from ../../src/formats/xsfformat.cpp:16: 2023-09-13T17:57:37,616 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:37,617 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:37,618 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:37,619 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:57:37,620 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:57:37,622 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:57:37,623 from /usr/include/c++/12/ios:42, 2023-09-13T17:57:37,624 from /usr/include/c++/12/ostream:38, 2023-09-13T17:57:37,625 from /usr/include/c++/12/iostream:39, 2023-09-13T17:57:37,626 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:57:37,627 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:37,629 131 | struct binary_function 2023-09-13T17:57:37,630 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:37,631 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:57:37,632 from ../../include/openbabel/obconversion.h:30: 2023-09-13T17:57:37,633 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:57:37,634 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:57:37,634 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:57:37,635 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:37,636 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:37,638 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:37,639 inlined from ‘virtual bool OpenBabel::XSFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/xsfformat.cpp:118:36: 2023-09-13T17:57:37,640 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:37,641 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:37,643 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:37,644 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:37,645 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:37,646 inlined from ‘virtual bool OpenBabel::XSFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/xsfformat.cpp:163:36: 2023-09-13T17:57:37,647 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:37,648 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:37,650 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:42,536 [139/533] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o 2023-09-13T17:57:42,538 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:42,539 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:42,540 from ../../src/formats/copyformat.cpp:14: 2023-09-13T17:57:42,541 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:42,542 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:42,543 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:42,545 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:57:42,546 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:57:42,547 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:57:42,548 from /usr/include/c++/12/ios:42, 2023-09-13T17:57:42,549 from /usr/include/c++/12/ostream:38, 2023-09-13T17:57:42,550 from /usr/include/c++/12/iostream:39, 2023-09-13T17:57:42,551 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:57:42,552 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:42,553 131 | struct binary_function 2023-09-13T17:57:42,554 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:42,719 [140/533] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o 2023-09-13T17:57:42,720 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:42,720 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:42,721 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:57:42,722 from ../../src/formats/boxformat.cpp:17: 2023-09-13T17:57:42,723 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:42,723 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:42,724 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:42,725 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:57:42,726 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:57:42,727 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:57:42,728 from /usr/include/c++/12/ios:42, 2023-09-13T17:57:42,729 from /usr/include/c++/12/ostream:38, 2023-09-13T17:57:42,730 from /usr/include/c++/12/iostream:39, 2023-09-13T17:57:42,731 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:57:42,732 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:42,734 131 | struct binary_function 2023-09-13T17:57:42,735 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:43,858 [141/533] Building CXX object src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o 2023-09-13T17:57:43,859 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:43,860 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:43,862 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:57:43,862 from ../../src/formats/CSRformat.cpp:17: 2023-09-13T17:57:43,863 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:43,864 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:43,865 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:43,866 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:57:43,867 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:57:43,869 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:57:43,870 from /usr/include/c++/12/ios:42, 2023-09-13T17:57:43,871 from /usr/include/c++/12/ostream:38, 2023-09-13T17:57:43,872 from /usr/include/c++/12/iostream:39, 2023-09-13T17:57:43,873 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:57:43,874 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:43,875 131 | struct binary_function 2023-09-13T17:57:43,876 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:45,773 [142/533] Building CXX object src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o 2023-09-13T17:57:45,774 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:45,775 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:45,776 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:57:45,776 from ../../src/formats/orcaformat.cpp:18: 2023-09-13T17:57:45,777 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:45,778 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:45,779 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:45,781 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:57:45,782 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:57:45,783 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:57:45,784 from /usr/include/c++/12/ios:42, 2023-09-13T17:57:45,785 from /usr/include/c++/12/ostream:38, 2023-09-13T17:57:45,786 from /usr/include/c++/12/iostream:39, 2023-09-13T17:57:45,787 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:57:45,789 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:45,790 131 | struct binary_function 2023-09-13T17:57:45,791 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:45,793 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:57:45,794 from ../../include/openbabel/obconversion.h:30: 2023-09-13T17:57:45,795 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBOrbital&}; _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’: 2023-09-13T17:57:45,798 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:57:45,799 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:57:45,800 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,801 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:57:45,802 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:57:45,803 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:57:45,804 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,805 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:45,806 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,807 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:57:45,808 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:57:45,810 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:57:45,812 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,813 In file included from /usr/include/c++/12/vector:63: 2023-09-13T17:57:45,815 /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*]’: 2023-09-13T17:57:45,820 /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,821 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, 2023-09-13T17:57:45,822 | ^~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,840 /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,841 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; bool _TrivialValueTypes = false]’, 2023-09-13T17:57:45,842 inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, 2023-09-13T17:57:45,843 inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; _Tp = OpenBabel::OBOrbital]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, 2023-09-13T17:57:45,844 inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:601:31: 2023-09-13T17:57:45,845 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,846 137 | { return std::__do_uninit_copy(__first, __last, __result); } 2023-09-13T17:57:45,848 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,849 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; bool _TrivialValueTypes = false]’, 2023-09-13T17:57:45,850 inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, 2023-09-13T17:57:45,851 inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; _Tp = OpenBabel::OBOrbital]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, 2023-09-13T17:57:45,852 inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1617:35, 2023-09-13T17:57:45,853 inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/vector.tcc:232:44: 2023-09-13T17:57:45,854 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,855 137 | { return std::__do_uninit_copy(__first, __last, __result); } 2023-09-13T17:57:45,856 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,857 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:45,858 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:45,860 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:252:30: 2023-09-13T17:57:45,861 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,862 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:45,863 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,864 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:45,867 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:45,869 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:253:35: 2023-09-13T17:57:45,870 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,872 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:45,873 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,874 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:45,875 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:45,877 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:254:35: 2023-09-13T17:57:45,879 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,881 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:45,883 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,884 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:45,885 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:45,886 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:324:41: 2023-09-13T17:57:45,887 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,888 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:45,889 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,900 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:45,902 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:45,903 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:351:36: 2023-09-13T17:57:45,903 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,904 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:45,905 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,906 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:45,907 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:45,909 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:356:36: 2023-09-13T17:57:45,910 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,911 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:45,912 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,913 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:45,914 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:45,915 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:361:36: 2023-09-13T17:57:45,917 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,917 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:45,918 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,920 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:45,921 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:45,922 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:365:41: 2023-09-13T17:57:45,923 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,924 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:45,924 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,925 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:45,926 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:45,927 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:402:38: 2023-09-13T17:57:45,928 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,928 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:45,929 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,930 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:45,931 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:45,933 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:403:38: 2023-09-13T17:57:45,934 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,935 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:45,936 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,937 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:45,938 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:45,939 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:420:42: 2023-09-13T17:57:45,940 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,941 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:45,942 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,943 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:45,944 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:45,945 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:440:35: 2023-09-13T17:57:45,946 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,947 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:45,950 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,951 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:45,952 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:45,953 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:441:39: 2023-09-13T17:57:45,954 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,955 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:45,955 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,956 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:45,958 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:45,959 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:442:36: 2023-09-13T17:57:45,960 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,961 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:45,962 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,963 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:45,964 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:45,970 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:461:35: 2023-09-13T17:57:45,971 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,972 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:45,974 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,975 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:45,976 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:45,977 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:462:39: 2023-09-13T17:57:45,979 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,980 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:45,981 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,982 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:45,983 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:45,984 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:463:36: 2023-09-13T17:57:45,985 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,986 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:45,987 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,988 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:45,989 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:45,990 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:483:37: 2023-09-13T17:57:45,991 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:45,992 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:45,994 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:45,995 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:45,996 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:45,998 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:484:39: 2023-09-13T17:57:46,010 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:46,011 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:46,012 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:46,014 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:46,015 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:46,016 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:485:44: 2023-09-13T17:57:46,017 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:46,018 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:46,019 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:46,020 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:46,021 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:46,022 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:502:42: 2023-09-13T17:57:46,023 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:46,024 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:46,025 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:46,025 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:57:46,026 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’, 2023-09-13T17:57:46,027 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:569:36: 2023-09-13T17:57:46,028 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:46,030 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:46,030 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:46,031 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’, 2023-09-13T17:57:46,032 inlined from ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/orcaformat.cpp:580:39: 2023-09-13T17:57:46,034 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:46,035 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:46,036 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:46,038 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; bool _TrivialValueTypes = false]’, 2023-09-13T17:57:46,039 inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, 2023-09-13T17:57:46,040 inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; _Tp = OpenBabel::OBOrbital]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, 2023-09-13T17:57:46,041 inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:601:31, 2023-09-13T17:57:46,042 inlined from ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ at ../../include/openbabel/generic.h:918:15, 2023-09-13T17:57:46,043 inlined from ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’ at ../../include/openbabel/generic.h:925:41: 2023-09-13T17:57:46,050 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:46,051 137 | { return std::__do_uninit_copy(__first, __last, __result); } 2023-09-13T17:57:46,052 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:46,053 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; bool _TrivialValueTypes = false]’, 2023-09-13T17:57:46,054 inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, 2023-09-13T17:57:46,055 inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; _Tp = OpenBabel::OBOrbital]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, 2023-09-13T17:57:46,056 inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:601:31, 2023-09-13T17:57:46,057 inlined from ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ at ../../include/openbabel/generic.h:918:15, 2023-09-13T17:57:46,059 inlined from ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’ at ../../include/openbabel/generic.h:925:41: 2023-09-13T17:57:46,060 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:46,061 137 | { return std::__do_uninit_copy(__first, __last, __result); } 2023-09-13T17:57:46,062 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:51,964 [143/533] Building CXX object src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o 2023-09-13T17:57:51,965 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:51,966 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:51,967 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:57:51,968 from ../../src/formats/siestaformat.cpp:16: 2023-09-13T17:57:51,969 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:51,970 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:51,972 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:51,973 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:57:51,974 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:57:51,975 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:57:51,976 from /usr/include/c++/12/ios:42, 2023-09-13T17:57:51,977 from /usr/include/c++/12/ostream:38, 2023-09-13T17:57:51,977 from /usr/include/c++/12/iostream:39, 2023-09-13T17:57:51,978 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:57:51,979 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:51,980 131 | struct binary_function 2023-09-13T17:57:51,981 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:54,987 [144/533] Building CXX object src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o 2023-09-13T17:57:54,988 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:54,990 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:54,991 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:57:54,992 from ../../src/formats/pwscfformat.cpp:16: 2023-09-13T17:57:54,993 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:54,994 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:54,995 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:54,997 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:57:54,998 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:57:54,999 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:57:55,000 from /usr/include/c++/12/ios:42, 2023-09-13T17:57:55,002 from /usr/include/c++/12/ostream:38, 2023-09-13T17:57:55,003 from /usr/include/c++/12/iostream:39, 2023-09-13T17:57:55,004 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:57:55,005 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:55,006 131 | struct binary_function 2023-09-13T17:57:55,007 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:59,024 [145/533] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o 2023-09-13T17:57:59,025 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:59,026 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:59,027 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:57:59,028 from ../../src/formats/zindoformat.cpp:16: 2023-09-13T17:57:59,029 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:59,030 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:59,031 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:59,033 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:57:59,034 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:57:59,035 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:57:59,036 from /usr/include/c++/12/ios:42, 2023-09-13T17:57:59,037 from /usr/include/c++/12/ostream:38, 2023-09-13T17:57:59,038 from /usr/include/c++/12/iostream:39, 2023-09-13T17:57:59,039 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:57:59,040 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:59,041 131 | struct binary_function 2023-09-13T17:57:59,042 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:59,093 [146/533] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o 2023-09-13T17:57:59,094 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:57:59,095 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:57:59,096 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:57:59,097 from ../../src/formats/vaspformat.cpp:16: 2023-09-13T17:57:59,098 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:57:59,099 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:57:59,100 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:59,101 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:57:59,101 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:57:59,102 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:57:59,103 from /usr/include/c++/12/ios:42, 2023-09-13T17:57:59,104 from /usr/include/c++/12/ostream:38, 2023-09-13T17:57:59,105 from /usr/include/c++/12/iostream:39, 2023-09-13T17:57:59,106 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:57:59,107 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:57:59,108 131 | struct binary_function 2023-09-13T17:57:59,109 | ^~~~~~~~~~~~~~~ 2023-09-13T17:57:59,110 ../../src/formats/vaspformat.cpp: In member function ‘virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2023-09-13T17:57:59,111 ../../src/formats/vaspformat.cpp:535:35: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = not_equal_to; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-13T17:57:59,112 535 | std::bind2nd(std::not_equal_to(), 0.0)); 2023-09-13T17:57:59,113 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:59,114 In file included from /usr/include/c++/12/bits/stl_function.h:1438: 2023-09-13T17:57:59,115 /usr/include/c++/12/backward/binders.h:172:5: note: declared here 2023-09-13T17:57:59,115 172 | bind2nd(const _Operation& __fn, const _Tp& __x) 2023-09-13T17:57:59,117 | ^~~~~~~ 2023-09-13T17:57:59,118 ../../src/formats/vaspformat.cpp:589:36: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = divides; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-13T17:57:59,119 589 | std::bind2nd(std::divides(), max / 100.0)); 2023-09-13T17:57:59,120 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:59,121 /usr/include/c++/12/backward/binders.h:172:5: note: declared here 2023-09-13T17:57:59,122 172 | bind2nd(const _Operation& __fn, const _Tp& __x) 2023-09-13T17:57:59,123 | ^~~~~~~ 2023-09-13T17:57:59,124 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:57:59,125 from ../../include/openbabel/obconversion.h:30: 2023-09-13T17:57:59,126 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::matrix3x3&}; _Tp = OpenBabel::matrix3x3; _Alloc = std::allocator]’: 2023-09-13T17:57:59,128 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:57:59,129 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:57:59,130 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:59,135 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:57:59,136 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:57:59,137 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:57:59,138 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:57:59,139 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:59,140 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:59,141 inlined from ‘virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/vaspformat.cpp:404:27: 2023-09-13T17:57:59,142 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:59,143 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:59,144 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:59,145 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:59,146 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:59,147 inlined from ‘virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/vaspformat.cpp:405:28: 2023-09-13T17:57:59,148 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:59,149 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:59,150 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:59,152 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:59,154 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:59,155 inlined from ‘virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/vaspformat.cpp:406:30: 2023-09-13T17:57:59,156 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:59,158 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:59,159 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:59,160 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:59,164 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:59,165 inlined from ‘virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/vaspformat.cpp:454:36: 2023-09-13T17:57:59,166 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:59,169 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:59,170 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:59,172 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:59,173 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:59,174 inlined from ‘virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/vaspformat.cpp:457:36: 2023-09-13T17:57:59,175 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:59,178 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:59,190 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:59,197 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:59,198 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:59,199 inlined from ‘virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/vaspformat.cpp:470:28: 2023-09-13T17:57:59,200 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:59,201 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:59,202 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:59,203 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:57:59,204 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:59,205 inlined from ‘virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/vaspformat.cpp:495:30: 2023-09-13T17:57:59,206 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:59,207 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:59,208 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:57:59,209 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:57:59,210 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::matrix3x3; _Alloc = std::allocator]’, 2023-09-13T17:57:59,220 inlined from ‘virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/vaspformat.cpp:516:30: 2023-09-13T17:57:59,230 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:59,231 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:57:59,232 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:57:59,233 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:57:59,233 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:57:59,234 inlined from ‘virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/vaspformat.cpp:583:30: 2023-09-13T17:57:59,235 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:57:59,236 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:57:59,236 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:01,505 [147/533] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o 2023-09-13T17:58:01,506 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:01,507 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:01,508 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:01,509 from ../../src/formats/dlpolyformat.cpp:14: 2023-09-13T17:58:01,510 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:01,511 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:01,512 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:01,513 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:01,514 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:01,515 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:01,516 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:01,517 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:01,518 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:01,519 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:01,520 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:01,521 131 | struct binary_function 2023-09-13T17:58:01,522 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:01,523 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:58:01,524 from ../../include/openbabel/obconversion.h:30: 2023-09-13T17:58:01,524 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:58:01,525 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:58:01,526 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:58:01,527 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:01,528 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:58:01,529 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:01,530 inlined from ‘bool OpenBabel::DlpolyInputReader::ReadAtom(std::istream&, OpenBabel::OBMol&)’ at ../../src/formats/dlpolyformat.cpp:247:25: 2023-09-13T17:58:01,531 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:01,532 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:01,533 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:04,000 [148/533] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o 2023-09-13T17:58:04,001 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:04,002 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:04,003 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:04,004 from ../../src/formats/reportformat.cpp:23: 2023-09-13T17:58:04,005 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:04,006 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:04,007 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:04,008 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:04,009 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:04,010 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:04,011 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:04,012 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:04,014 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:04,015 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:04,016 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:04,017 131 | struct binary_function 2023-09-13T17:58:04,018 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:04,946 [149/533] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o 2023-09-13T17:58:04,948 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:04,949 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:04,950 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:04,950 from ../../src/formats/mopacformat.cpp:17: 2023-09-13T17:58:04,952 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:04,954 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:04,955 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:04,957 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:04,958 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:04,959 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:04,960 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:04,961 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:04,962 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:04,963 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:04,964 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:04,965 131 | struct binary_function 2023-09-13T17:58:04,967 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:04,968 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:58:04,970 from ../../include/openbabel/obconversion.h:30: 2023-09-13T17:58:04,971 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:58:04,976 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:58:04,977 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:58:04,977 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:04,978 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:58:04,979 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:58:04,980 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:04,981 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:04,982 inlined from ‘virtual bool OpenBabel::MOPACFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/mopacformat.cpp:291:42: 2023-09-13T17:58:04,983 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:04,984 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:04,985 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:04,987 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:04,988 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:04,992 inlined from ‘virtual bool OpenBabel::MOPACFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/mopacformat.cpp:317:34: 2023-09-13T17:58:04,993 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:04,994 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:04,995 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:04,996 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:04,997 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:04,998 inlined from ‘virtual bool OpenBabel::MOPACFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/mopacformat.cpp:339:34: 2023-09-13T17:58:05,000 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:05,001 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:05,002 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:05,003 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:05,004 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:05,005 inlined from ‘virtual bool OpenBabel::MOPACFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/mopacformat.cpp:385:36: 2023-09-13T17:58:05,006 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:05,007 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:05,008 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:05,009 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:05,010 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:05,020 inlined from ‘virtual bool OpenBabel::MOPACFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/mopacformat.cpp:404:28: 2023-09-13T17:58:05,021 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:05,022 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:05,023 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:05,024 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:05,025 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:05,026 inlined from ‘virtual bool OpenBabel::MOPACFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/mopacformat.cpp:410:28: 2023-09-13T17:58:05,027 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:05,028 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:05,029 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:05,030 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:05,031 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:05,032 inlined from ‘virtual bool OpenBabel::MOPACFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/mopacformat.cpp:417:28: 2023-09-13T17:58:05,033 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:05,035 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:05,036 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:05,037 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:58:05,038 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:05,038 inlined from ‘virtual bool OpenBabel::MOPACFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/mopacformat.cpp:424:59: 2023-09-13T17:58:05,039 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:05,040 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:05,041 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:05,042 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:05,043 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:05,043 inlined from ‘virtual bool OpenBabel::MOPACFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/mopacformat.cpp:441:34: 2023-09-13T17:58:05,044 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:05,045 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:05,046 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,002 [150/533] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o 2023-09-13T17:58:06,003 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:06,004 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:06,004 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:06,005 from ../../src/formats/nwchemformat.cpp:17: 2023-09-13T17:58:06,007 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:06,008 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:06,009 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:06,010 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:06,011 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:06,012 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:06,013 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:06,014 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:06,015 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:06,016 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:06,017 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:06,018 131 | struct binary_function 2023-09-13T17:58:06,020 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:06,021 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:58:06,022 from ../../include/openbabel/obconversion.h:30: 2023-09-13T17:58:06,023 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBOrbital&}; _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’: 2023-09-13T17:58:06,024 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:58:06,025 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:58:06,026 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,027 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:58:06,028 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:58:06,029 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:58:06,030 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:06,031 inlined from ‘void OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::istream*, OpenBabel::OBMol*)’ at ../../src/formats/nwchemformat.cpp:951:35: 2023-09-13T17:58:06,032 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,033 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:58:06,033 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:58:06,034 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:58:06,036 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:58:06,037 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:58:06,038 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,039 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:06,040 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:06,041 inlined from ‘void OpenBabel::NWChemOutputFormat::ReadPartialCharges(std::istream*, OpenBabel::OBMol*)’ at ../../src/formats/nwchemformat.cpp:428:34: 2023-09-13T17:58:06,042 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,043 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:06,044 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,045 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:06,046 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:06,047 inlined from ‘void OpenBabel::NWChemOutputFormat::ReadMEPCalculation(std::istream*, OpenBabel::OBMol*)’ at ../../src/formats/nwchemformat.cpp:560:43: 2023-09-13T17:58:06,049 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,051 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:06,052 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,053 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:06,053 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:06,054 inlined from ‘void OpenBabel::NWChemOutputFormat::ReadTDDFTCalculation(std::istream*, OpenBabel::OBMol*)’ at ../../src/formats/nwchemformat.cpp:356:34: 2023-09-13T17:58:06,055 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,056 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:06,057 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,058 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:06,059 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:06,059 inlined from ‘void OpenBabel::NWChemOutputFormat::ReadTDDFTCalculation(std::istream*, OpenBabel::OBMol*)’ at ../../src/formats/nwchemformat.cpp:361:46: 2023-09-13T17:58:06,060 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,061 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:06,062 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,063 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:06,064 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:06,065 inlined from ‘void OpenBabel::NWChemOutputFormat::ReadTDDFTCalculation(std::istream*, OpenBabel::OBMol*)’ at ../../src/formats/nwchemformat.cpp:369:46: 2023-09-13T17:58:06,066 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,067 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:06,068 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,069 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:58:06,073 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:58:06,080 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:58:06,088 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,089 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:06,090 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:06,091 inlined from ‘void OpenBabel::NWChemOutputFormat::ReadNEBCalculation(std::istream*, OpenBabel::OBMol*)’ at ../../src/formats/nwchemformat.cpp:865:35: 2023-09-13T17:58:06,093 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,094 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:06,095 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,095 In file included from /usr/include/c++/12/vector:63: 2023-09-13T17:58:06,096 /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*]’: 2023-09-13T17:58:06,097 /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,098 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, 2023-09-13T17:58:06,099 | ^~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,110 /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,111 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; bool _TrivialValueTypes = false]’, 2023-09-13T17:58:06,112 inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, 2023-09-13T17:58:06,113 inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; _Tp = OpenBabel::OBOrbital]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, 2023-09-13T17:58:06,114 inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1617:35, 2023-09-13T17:58:06,115 inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/vector.tcc:232:44: 2023-09-13T17:58:06,116 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,117 137 | { return std::__do_uninit_copy(__first, __last, __result); } 2023-09-13T17:58:06,118 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,119 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; bool _TrivialValueTypes = false]’, 2023-09-13T17:58:06,120 inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, 2023-09-13T17:58:06,121 inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; _Tp = OpenBabel::OBOrbital]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, 2023-09-13T17:58:06,122 inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:601:31, 2023-09-13T17:58:06,123 inlined from ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ at ../../include/openbabel/generic.h:918:15, 2023-09-13T17:58:06,124 inlined from ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’ at ../../include/openbabel/generic.h:925:41: 2023-09-13T17:58:06,125 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,126 137 | { return std::__do_uninit_copy(__first, __last, __result); } 2023-09-13T17:58:06,127 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,128 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; bool _TrivialValueTypes = false]’, 2023-09-13T17:58:06,129 inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, 2023-09-13T17:58:06,130 inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; _Tp = OpenBabel::OBOrbital]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, 2023-09-13T17:58:06,131 inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:601:31, 2023-09-13T17:58:06,132 inlined from ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ at ../../include/openbabel/generic.h:918:15, 2023-09-13T17:58:06,133 inlined from ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’ at ../../include/openbabel/generic.h:925:41: 2023-09-13T17:58:06,134 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,135 137 | { return std::__do_uninit_copy(__first, __last, __result); } 2023-09-13T17:58:06,136 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,137 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’, 2023-09-13T17:58:06,138 inlined from ‘void OpenBabel::NWChemOutputFormat::ReadOrbitals(std::istream*, OpenBabel::OBMol*)’ at ../../src/formats/nwchemformat.cpp:492:31: 2023-09-13T17:58:06,139 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,139 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:58:06,144 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:58:06,146 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; bool _TrivialValueTypes = false]’, 2023-09-13T17:58:06,147 inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, 2023-09-13T17:58:06,148 inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; _Tp = OpenBabel::OBOrbital]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, 2023-09-13T17:58:06,149 inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:601:31, 2023-09-13T17:58:06,150 inlined from ‘void OpenBabel::NWChemOutputFormat::ReadOrbitals(std::istream*, OpenBabel::OBMol*)’ at ../../src/formats/nwchemformat.cpp:503:43: 2023-09-13T17:58:06,152 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,153 137 | { return std::__do_uninit_copy(__first, __last, __result); } 2023-09-13T17:58:06,154 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,156 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; bool _TrivialValueTypes = false]’, 2023-09-13T17:58:06,157 inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, 2023-09-13T17:58:06,159 inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; _Tp = OpenBabel::OBOrbital]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, 2023-09-13T17:58:06,161 inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:601:31, 2023-09-13T17:58:06,162 inlined from ‘void OpenBabel::NWChemOutputFormat::ReadOrbitals(std::istream*, OpenBabel::OBMol*)’ at ../../src/formats/nwchemformat.cpp:512:46: 2023-09-13T17:58:06,165 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,166 137 | { return std::__do_uninit_copy(__first, __last, __result); } 2023-09-13T17:58:06,168 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,170 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; bool _TrivialValueTypes = false]’, 2023-09-13T17:58:06,172 inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, 2023-09-13T17:58:06,173 inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenBabel::OBOrbital*; _Tp = OpenBabel::OBOrbital]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, 2023-09-13T17:58:06,175 inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:601:31, 2023-09-13T17:58:06,177 inlined from ‘void OpenBabel::NWChemOutputFormat::ReadOrbitals(std::istream*, OpenBabel::OBMol*)’ at ../../src/formats/nwchemformat.cpp:514:47: 2023-09-13T17:58:06,179 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,181 137 | { return std::__do_uninit_copy(__first, __last, __result); } 2023-09-13T17:58:06,183 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,185 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:06,188 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:06,190 inlined from ‘void OpenBabel::NWChemOutputFormat::ReadGeometryOptimizationCalculation(std::istream*, OpenBabel::OBMol*)’ at ../../src/formats/nwchemformat.cpp:616:35: 2023-09-13T17:58:06,192 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,194 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:06,196 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,198 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:06,200 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:06,202 inlined from ‘void OpenBabel::NWChemOutputFormat::ReadFrequencyCalculation(std::istream*, OpenBabel::OBMol*)’ at ../../src/formats/nwchemformat.cpp:670:31: 2023-09-13T17:58:06,206 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,208 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:06,210 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,212 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:06,214 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:06,216 inlined from ‘void OpenBabel::NWChemOutputFormat::ReadFrequencyCalculation(std::istream*, OpenBabel::OBMol*)’ at ../../src/formats/nwchemformat.cpp:679:32: 2023-09-13T17:58:06,218 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,220 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:06,222 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,224 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:06,225 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:06,227 inlined from ‘void OpenBabel::NWChemOutputFormat::ReadFrequencyCalculation(std::istream*, OpenBabel::OBMol*)’ at ../../src/formats/nwchemformat.cpp:683:32: 2023-09-13T17:58:06,230 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,232 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:06,234 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,236 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:06,238 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:06,240 inlined from ‘void OpenBabel::NWChemOutputFormat::ReadFrequencyCalculation(std::istream*, OpenBabel::OBMol*)’ at ../../src/formats/nwchemformat.cpp:687:32: 2023-09-13T17:58:06,242 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,245 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:06,247 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,249 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:58:06,251 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:06,253 inlined from ‘void OpenBabel::NWChemOutputFormat::ReadFrequencyCalculation(std::istream*, OpenBabel::OBMol*)’ at ../../src/formats/nwchemformat.cpp:695:37: 2023-09-13T17:58:06,255 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,256 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:06,257 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,258 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:06,259 inlined from ‘void OpenBabel::NWChemOutputFormat::ReadFrequencyCalculation(std::istream*, OpenBabel::OBMol*)’ at ../../src/formats/nwchemformat.cpp:702:38: 2023-09-13T17:58:06,260 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,260 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:58:06,261 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:58:06,262 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:06,263 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:06,264 inlined from ‘void OpenBabel::NWChemOutputFormat::ReadFrequencyCalculation(std::istream*, OpenBabel::OBMol*)’ at ../../src/formats/nwchemformat.cpp:716:42: 2023-09-13T17:58:06,265 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:06,266 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:06,267 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:06,589 [151/533] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o 2023-09-13T17:58:06,590 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:06,591 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:06,592 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:06,594 from ../../src/formats/hinformat.cpp:17: 2023-09-13T17:58:06,595 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:06,596 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:06,597 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:06,598 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:06,599 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:06,600 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:06,601 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:06,602 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:06,603 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:06,604 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:06,606 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:06,607 131 | struct binary_function 2023-09-13T17:58:06,607 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:08,466 [152/533] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o 2023-09-13T17:58:08,577 [153/533] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.cpp.o 2023-09-13T17:58:08,578 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:08,579 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:08,580 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:08,581 from ../../src/formats/carformat.cpp:18: 2023-09-13T17:58:08,582 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:08,582 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:08,583 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:08,584 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:08,585 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:08,586 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:08,587 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:08,588 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:08,589 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:08,590 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:08,591 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:08,591 131 | struct binary_function 2023-09-13T17:58:08,592 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:14,396 [154/533] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o 2023-09-13T17:58:14,397 In file included from ../../include/openbabel/op.h:25, 2023-09-13T17:58:14,398 from ../../src/ops/unique.cpp:19: 2023-09-13T17:58:14,400 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:14,401 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:14,402 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:14,403 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:14,404 from ../../include/openbabel/op.h:23: 2023-09-13T17:58:14,405 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:14,406 131 | struct binary_function 2023-09-13T17:58:14,407 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:14,408 In file included from ../../src/ops/unique.cpp:23: 2023-09-13T17:58:14,408 ../../include/openbabel/inchiformat.h:134:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:14,409 134 | : public std::binary_function 2023-09-13T17:58:14,410 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:14,411 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:14,412 131 | struct binary_function 2023-09-13T17:58:14,413 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:15,327 [155/533] Building CXX object src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o 2023-09-13T17:58:15,327 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:15,328 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:15,329 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:15,331 from ../../src/formats/gulpformat.cpp:16: 2023-09-13T17:58:15,332 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:15,333 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:15,335 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:15,336 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:15,337 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:15,338 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:15,339 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:15,340 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:15,341 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:15,342 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:15,343 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:15,344 131 | struct binary_function 2023-09-13T17:58:15,345 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:19,251 [156/533] Building CXX object src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o 2023-09-13T17:58:19,252 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:19,253 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:19,254 from ../../src/formats/pngformat.cpp:19: 2023-09-13T17:58:19,255 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:19,256 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:19,257 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:19,257 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:19,258 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:19,259 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:19,260 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:19,261 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:19,262 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:19,263 from ../../src/formats/pngformat.cpp:13: 2023-09-13T17:58:19,264 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:19,265 131 | struct binary_function 2023-09-13T17:58:19,267 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:21,759 [157/533] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o 2023-09-13T17:58:21,761 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:21,762 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:21,763 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:21,765 from ../../src/formats/mpqcformat.cpp:16: 2023-09-13T17:58:21,766 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:21,767 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:21,769 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:21,782 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:21,783 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:21,784 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:21,785 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:21,786 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:21,788 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:21,789 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:21,791 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:21,793 131 | struct binary_function 2023-09-13T17:58:21,795 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:22,776 [158/533] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.cpp.o 2023-09-13T17:58:22,776 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:22,777 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:22,778 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:22,779 from ../../src/formats/outformat.cpp:16: 2023-09-13T17:58:22,780 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:22,781 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:22,781 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:22,782 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:22,783 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:22,784 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:22,784 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:22,785 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:22,786 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:22,786 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:22,787 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:22,788 131 | struct binary_function 2023-09-13T17:58:22,789 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:23,617 [159/533] Building CXX object src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o 2023-09-13T17:58:23,617 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:23,618 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:23,619 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:23,620 from ../../src/formats/smileyformat.cpp:15: 2023-09-13T17:58:23,621 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:23,622 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:23,623 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:23,624 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:23,625 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:23,626 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:23,627 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:23,628 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:23,629 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:23,630 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:23,631 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:23,632 131 | struct binary_function 2023-09-13T17:58:23,633 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:25,204 [160/533] Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o 2023-09-13T17:58:25,205 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:25,206 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:25,208 from ../../src/formats/fchkformat.cpp:24: 2023-09-13T17:58:25,209 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:25,210 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:25,212 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:25,213 In file included from /usr/include/c++/12/functional:49, 2023-09-13T17:58:25,214 from ../../src/formats/fchkformat.cpp:16: 2023-09-13T17:58:25,215 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:25,215 131 | struct binary_function 2023-09-13T17:58:25,217 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:25,218 ../../src/formats/fchkformat.cpp: In member function ‘virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2023-09-13T17:58:25,219 ../../src/formats/fchkformat.cpp:668:43: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less_equal; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-13T17:58:25,220 668 | bind2nd(less_equal(), 0)) || 2023-09-13T17:58:25,221 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:25,222 In file included from /usr/include/c++/12/bits/stl_function.h:1438: 2023-09-13T17:58:25,223 /usr/include/c++/12/backward/binders.h:172:5: note: declared here 2023-09-13T17:58:25,224 172 | bind2nd(const _Operation& __fn, const _Tp& __x) 2023-09-13T17:58:25,224 | ^~~~~~~ 2023-09-13T17:58:25,225 ../../src/formats/fchkformat.cpp:671:43: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-13T17:58:25,227 671 | bind2nd(greater(), MxBond)) || 2023-09-13T17:58:25,228 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:25,229 /usr/include/c++/12/backward/binders.h:172:5: note: declared here 2023-09-13T17:58:25,230 172 | bind2nd(const _Operation& __fn, const _Tp& __x) 2023-09-13T17:58:25,231 | ^~~~~~~ 2023-09-13T17:58:25,233 ../../src/formats/fchkformat.cpp:674:43: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-13T17:58:25,234 674 | bind2nd(less(), 0)) || 2023-09-13T17:58:25,250 | ~~~~~~~^~~~~~~~~~~~~~~~ 2023-09-13T17:58:25,251 /usr/include/c++/12/backward/binders.h:172:5: note: declared here 2023-09-13T17:58:25,252 172 | bind2nd(const _Operation& __fn, const _Tp& __x) 2023-09-13T17:58:25,254 | ^~~~~~~ 2023-09-13T17:58:25,255 ../../src/formats/fchkformat.cpp:677:43: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-13T17:58:25,256 677 | bind2nd(greater(), Natoms))) 2023-09-13T17:58:25,257 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:25,258 /usr/include/c++/12/backward/binders.h:172:5: note: declared here 2023-09-13T17:58:25,259 172 | bind2nd(const _Operation& __fn, const _Tp& __x) 2023-09-13T17:58:25,260 | ^~~~~~~ 2023-09-13T17:58:25,261 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:58:25,262 from ../../include/openbabel/mol.h:44, 2023-09-13T17:58:25,263 from ../../src/formats/fchkformat.cpp:23: 2023-09-13T17:58:25,264 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:58:25,265 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:58:25,266 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:58:25,267 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:25,268 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:58:25,269 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:25,270 inlined from ‘static bool OpenBabel::FCHKFormat::read_numbers(const char*, std::vector<_Tp>&, unsigned int) [with T = double]’ at ../../src/formats/fchkformat.cpp:762:26: 2023-09-13T17:58:25,271 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:25,272 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:58:25,273 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:58:25,273 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:25,274 inlined from ‘static bool OpenBabel::FCHKFormat::read_numbers(const char*, std::vector<_Tp>&, unsigned int) [with T = double]’ at ../../src/formats/fchkformat.cpp:784:20: 2023-09-13T17:58:25,275 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:25,276 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:58:25,277 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:58:25,278 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:25,279 inlined from ‘static bool OpenBabel::FCHKFormat::read_numbers(const char*, std::vector<_Tp>&, unsigned int) [with T = double]’ at ../../src/formats/fchkformat.cpp:762:26, 2023-09-13T17:58:25,280 inlined from ‘virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/fchkformat.cpp:240:42: 2023-09-13T17:58:25,281 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:25,282 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:58:25,283 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:58:25,694 [161/533] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o 2023-09-13T17:58:25,695 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:25,696 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:25,697 from ../../src/formats/inchiformat.cpp:23: 2023-09-13T17:58:25,698 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:25,699 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:25,701 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:25,701 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-13T17:58:25,702 from /usr/include/c++/12/vector:66, 2023-09-13T17:58:25,703 from ../../include/openbabel/mol.h:44, 2023-09-13T17:58:25,704 from ../../src/formats/inchiformat.cpp:19: 2023-09-13T17:58:25,705 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:25,706 131 | struct binary_function 2023-09-13T17:58:25,708 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:25,710 In file included from ../../src/formats/inchiformat.cpp:32: 2023-09-13T17:58:25,711 ../../include/openbabel/inchiformat.h:134:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:25,712 134 | : public std::binary_function 2023-09-13T17:58:25,713 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:25,714 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:25,716 131 | struct binary_function 2023-09-13T17:58:25,719 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:26,615 [162/533] Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.cpp.o 2023-09-13T17:58:26,616 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:26,617 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:26,618 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:26,619 from ../../src/formats/molreport.cpp:21: 2023-09-13T17:58:26,620 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:26,621 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:26,622 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:26,623 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:26,623 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:26,624 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:26,625 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:26,626 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:26,627 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:26,628 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:26,630 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:26,631 131 | struct binary_function 2023-09-13T17:58:26,632 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:30,168 [163/533] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o 2023-09-13T17:58:30,169 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:30,170 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:30,171 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:30,172 from ../../src/formats/crkformat.cpp:16: 2023-09-13T17:58:30,174 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:30,175 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:30,176 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:30,177 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:30,178 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:30,179 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:30,180 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:30,181 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:30,182 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:30,183 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:30,184 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:30,186 131 | struct binary_function 2023-09-13T17:58:30,187 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:31,884 [164/533] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.cpp.o 2023-09-13T17:58:31,885 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:31,887 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:31,888 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:31,888 from ../../src/formats/featformat.cpp:17: 2023-09-13T17:58:31,889 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:31,890 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:31,892 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:31,892 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:31,894 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:31,895 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:31,896 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:31,897 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:31,898 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:31,899 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:31,900 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:31,901 131 | struct binary_function 2023-09-13T17:58:31,902 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:31,912 [165/533] Building CXX object src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o 2023-09-13T17:58:31,913 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:31,914 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:31,915 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:31,917 from ../../src/formats/acrformat.cpp:26: 2023-09-13T17:58:31,918 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:31,919 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:31,920 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:31,921 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-13T17:58:31,922 from /usr/include/c++/12/vector:66, 2023-09-13T17:58:31,923 from ../../include/openbabel/mol.h:44, 2023-09-13T17:58:31,924 from ../../src/formats/acrformat.cpp:23: 2023-09-13T17:58:31,925 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:31,927 131 | struct binary_function 2023-09-13T17:58:31,928 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:32,102 [166/533] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o 2023-09-13T17:58:32,102 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:32,103 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:32,104 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:32,105 from ../../src/formats/tinkerformat.cpp:17: 2023-09-13T17:58:32,106 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:32,107 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:32,108 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:32,108 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:32,109 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:32,110 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:32,111 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:32,112 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:32,113 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:32,114 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:32,114 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:32,115 131 | struct binary_function 2023-09-13T17:58:32,116 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:32,907 [167/533] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o 2023-09-13T17:58:32,908 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:32,909 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:32,910 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:32,911 from ../../src/formats/shelxformat.cpp:18: 2023-09-13T17:58:32,912 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:32,912 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:32,913 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:32,914 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:32,915 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:32,916 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:32,917 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:32,918 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:32,919 from ../../include/openbabel/math/matrix3x3.h:24, 2023-09-13T17:58:32,921 from ../../src/formats/shelxformat.cpp:17: 2023-09-13T17:58:32,922 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:32,923 131 | struct binary_function 2023-09-13T17:58:32,930 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:40,121 [168/533] Building CXX object src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o 2023-09-13T17:58:40,122 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:40,123 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:40,124 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:40,125 from ../../src/formats/freefracformat.cpp:16: 2023-09-13T17:58:40,126 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:40,128 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:40,129 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:40,130 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:40,131 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:40,132 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:40,133 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:40,134 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:40,135 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:40,136 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:40,137 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:40,138 131 | struct binary_function 2023-09-13T17:58:40,139 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:42,642 [169/533] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o 2023-09-13T17:58:42,643 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:42,645 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:42,645 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:42,646 from ../../src/formats/povrayformat.cpp:23: 2023-09-13T17:58:42,647 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:42,648 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:42,649 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:42,650 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:42,651 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:42,651 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:42,652 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:42,653 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:42,654 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:42,655 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:42,656 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:42,658 131 | struct binary_function 2023-09-13T17:58:42,659 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:42,660 ../../src/formats/povrayformat.cpp: In function ‘void OpenBabel::OutputCSTBonds(std::ostream&, OBMol&, std::string)’: 2023-09-13T17:58:42,661 ../../src/formats/povrayformat.cpp:526:78: warning: ‘std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = char]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-13T17:58:42,662 526 | bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); 2023-09-13T17:58:42,663 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:42,664 In file included from /usr/include/c++/12/bits/stl_function.h:1438: 2023-09-13T17:58:42,665 /usr/include/c++/12/backward/binders.h:136:5: note: declared here 2023-09-13T17:58:42,666 136 | bind1st(const _Operation& __fn, const _Tp& __x) 2023-09-13T17:58:42,667 | ^~~~~~~ 2023-09-13T17:58:42,668 ../../src/formats/povrayformat.cpp:587:78: warning: ‘std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = char]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-13T17:58:42,670 587 | bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); 2023-09-13T17:58:42,671 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:42,672 /usr/include/c++/12/backward/binders.h:136:5: note: declared here 2023-09-13T17:58:42,673 136 | bind1st(const _Operation& __fn, const _Tp& __x) 2023-09-13T17:58:42,674 | ^~~~~~~ 2023-09-13T17:58:44,535 [170/533] Building CXX object src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o 2023-09-13T17:58:44,536 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:44,537 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:44,538 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:44,540 from ../../src/formats/qchemformat.cpp:18: 2023-09-13T17:58:44,541 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:44,542 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:44,543 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:44,544 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:44,545 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:44,546 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:44,547 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:44,548 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:44,549 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:44,550 from ../../src/formats/qchemformat.cpp:16: 2023-09-13T17:58:44,551 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:44,551 131 | struct binary_function 2023-09-13T17:58:44,552 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:44,553 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:58:44,554 from ../../include/openbabel/obconversion.h:30: 2023-09-13T17:58:44,555 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:58:44,556 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:58:44,558 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:58:44,559 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:44,560 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:58:44,561 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:58:44,562 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:44,562 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:44,563 inlined from ‘virtual bool OpenBabel::QChemOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/qchemformat.cpp:233:36: 2023-09-13T17:58:44,564 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:44,565 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:44,566 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:44,567 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:44,568 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:44,569 inlined from ‘virtual bool OpenBabel::QChemOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/qchemformat.cpp:243:36: 2023-09-13T17:58:44,570 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:44,572 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:44,573 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:44,574 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:58:44,579 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:44,580 inlined from ‘virtual bool OpenBabel::QChemOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/qchemformat.cpp:261:33: 2023-09-13T17:58:44,580 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:44,581 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:44,582 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:44,584 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:58:44,584 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:44,586 inlined from ‘virtual bool OpenBabel::QChemOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/qchemformat.cpp:263:33: 2023-09-13T17:58:44,588 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:44,589 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:44,590 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:44,591 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:58:44,600 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:44,603 inlined from ‘virtual bool OpenBabel::QChemOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/qchemformat.cpp:265:33: 2023-09-13T17:58:44,605 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:44,606 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:44,607 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:44,731 [171/533] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o 2023-09-13T17:58:44,732 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:44,733 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:44,734 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:44,736 from ../../src/formats/pdbformat.cpp:17: 2023-09-13T17:58:44,737 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:44,738 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:44,739 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:44,740 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:44,741 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:44,742 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:44,743 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:44,743 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:44,744 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:44,745 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:44,746 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:44,747 131 | struct binary_function 2023-09-13T17:58:44,747 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:48,964 [172/533] Building CXX object src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o 2023-09-13T17:58:48,965 FAILED: src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o 2023-09-13T17:58:48,966 /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dpainterformat_EXPORTS -Iinclude -I../../data -I../../include -I/usr/include/eigen3 -I../../external/rapidjson-1.1.0/include -I/usr/include/cairo -I../../include/inchi -I/usr/include/libxml2 -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -MF src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o.d -o src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -c ../../src/depict/commandpainter.cpp 2023-09-13T17:58:48,967 In file included from ../../src/depict/commandpainter.cpp:18: 2023-09-13T17:58:48,968 ../../include/openbabel/obutil.h: In member function ‘void OpenBabel::OBStopwatch::Start()’: 2023-09-13T17:58:48,969 ../../include/openbabel/obutil.h:65:14: error: ‘clock’ was not declared in this scope 2023-09-13T17:58:48,970 65 | start= clock(); 2023-09-13T17:58:48,972 | ^~~~~ 2023-09-13T17:58:48,973 ../../include/openbabel/obutil.h:40:1: note: ‘clock’ is defined in header ‘’; did you forget to ‘#include ’? 2023-09-13T17:58:48,974 39 | #include 2023-09-13T17:58:48,975 +++ |+#include 2023-09-13T17:58:48,977 40 | 2023-09-13T17:58:48,978 ../../include/openbabel/obutil.h: In member function ‘double OpenBabel::OBStopwatch::Lap()’: 2023-09-13T17:58:48,979 ../../include/openbabel/obutil.h:70:13: error: ‘clock’ was not declared in this scope 2023-09-13T17:58:48,981 70 | stop= clock(); 2023-09-13T17:58:48,982 | ^~~~~ 2023-09-13T17:58:48,983 ../../include/openbabel/obutil.h:70:13: note: ‘clock’ is defined in header ‘’; did you forget to ‘#include ’? 2023-09-13T17:58:48,985 ../../include/openbabel/obutil.h:71:40: error: ‘CLOCKS_PER_SEC’ was not declared in this scope 2023-09-13T17:58:48,986 71 | return((stop - start) / (double) CLOCKS_PER_SEC); 2023-09-13T17:58:48,987 | ^~~~~~~~~~~~~~ 2023-09-13T17:58:48,988 ../../include/openbabel/obutil.h:71:40: note: the macro ‘CLOCKS_PER_SEC’ had not yet been defined 2023-09-13T17:58:48,990 In file included from /usr/include/time.h:33, 2023-09-13T17:58:48,991 from /usr/include/pthread.h:23, 2023-09-13T17:58:48,992 from /usr/include/arm-linux-gnueabihf/c++/12/bits/gthr-default.h:35, 2023-09-13T17:58:48,993 from /usr/include/arm-linux-gnueabihf/c++/12/bits/gthr.h:148, 2023-09-13T17:58:48,994 from /usr/include/c++/12/ext/atomicity.h:35, 2023-09-13T17:58:48,995 from /usr/include/c++/12/bits/ios_base.h:39, 2023-09-13T17:58:48,996 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:48,997 from /usr/include/c++/12/istream:38, 2023-09-13T17:58:48,998 from /usr/include/c++/12/sstream:38, 2023-09-13T17:58:49,000 from ../../include/openbabel/depict/painter.h:25, 2023-09-13T17:58:49,001 from ../../include/openbabel/depict/commandpainter.h:21, 2023-09-13T17:58:49,002 from ../../src/depict/commandpainter.cpp:19: 2023-09-13T17:58:49,003 /usr/include/arm-linux-gnueabihf/bits/time.h:34: note: it was later defined here 2023-09-13T17:58:49,004 34 | #define CLOCKS_PER_SEC ((__clock_t) 1000000) 2023-09-13T17:58:49,005 | 2023-09-13T17:58:50,104 [173/533] Building CXX object src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o 2023-09-13T17:58:50,105 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:50,106 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:50,107 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:50,108 from ../../src/formats/painterformat.cpp:19: 2023-09-13T17:58:50,109 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:50,110 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:50,111 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:50,112 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:50,113 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:50,114 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:50,115 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:50,116 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:50,117 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:50,118 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:50,120 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:50,121 131 | struct binary_function 2023-09-13T17:58:50,122 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:50,841 [174/533] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o 2023-09-13T17:58:50,842 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:50,843 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:50,844 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:50,845 from ../../src/formats/mol2format.cpp:17: 2023-09-13T17:58:50,846 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:50,847 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:50,848 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:50,849 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:50,850 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:50,851 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:50,852 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:50,853 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:50,854 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:50,854 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:50,855 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:50,856 131 | struct binary_function 2023-09-13T17:58:50,857 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:51,382 [175/533] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o 2023-09-13T17:58:51,382 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:51,383 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:51,385 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:51,385 from ../../src/formats/asciiformat.cpp:19: 2023-09-13T17:58:51,386 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:51,386 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:51,387 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:51,388 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:51,388 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:51,389 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:51,389 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:51,390 from /usr/include/c++/12/ostream:38, 2023-09-13T17:58:51,391 from /usr/include/c++/12/iostream:39, 2023-09-13T17:58:51,391 from ../../include/openbabel/obconversion.h:24: 2023-09-13T17:58:51,392 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:51,393 131 | struct binary_function 2023-09-13T17:58:51,393 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:51,871 [176/533] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o 2023-09-13T17:58:51,872 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:51,873 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:51,873 from ../../include/openbabel/obmolecformat.h:36, 2023-09-13T17:58:51,874 from ../../src/formats/gausscubeformat.cpp:29: 2023-09-13T17:58:51,875 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:51,875 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:51,876 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:51,877 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:51,878 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:51,878 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:51,879 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:51,880 from /usr/include/c++/12/istream:38, 2023-09-13T17:58:51,881 from /usr/include/c++/12/sstream:38, 2023-09-13T17:58:51,881 from ../../src/formats/gausscubeformat.cpp:25: 2023-09-13T17:58:51,882 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:51,883 131 | struct binary_function 2023-09-13T17:58:51,883 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:51,884 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:58:51,885 from ../../include/openbabel/obconversion.h:30: 2023-09-13T17:58:51,885 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:58:51,886 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:58:51,886 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:58:51,887 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:51,888 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-13T17:58:51,889 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:58:51,889 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:51,890 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:51,890 inlined from ‘virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/gausscubeformat.cpp:507:25: 2023-09-13T17:58:51,891 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:51,891 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:51,892 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:51,892 In file included from /usr/include/c++/12/vector:64: 2023-09-13T17:58:51,893 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-13T17:58:51,893 inlined from ‘virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/gausscubeformat.cpp:518:25: 2023-09-13T17:58:51,894 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:51,895 1287 | _M_realloc_insert(end(), __x); 2023-09-13T17:58:51,895 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-13T17:58:54,768 [177/533] Building CXX object src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o 2023-09-13T17:58:54,769 In file included from ../../include/openbabel/format.h:22, 2023-09-13T17:58:54,770 from ../../include/openbabel/obconversion.h:37, 2023-09-13T17:58:54,771 from ../../src/formats/adfformat.cpp:35: 2023-09-13T17:58:54,771 ../../include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-13T17:58:54,772 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-13T17:58:54,773 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:54,774 In file included from /usr/include/c++/12/string:48, 2023-09-13T17:58:54,775 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-13T17:58:54,776 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-13T17:58:54,777 from /usr/include/c++/12/ios:42, 2023-09-13T17:58:54,778 from /usr/include/c++/12/istream:38, 2023-09-13T17:58:54,778 from /usr/include/c++/12/fstream:38, 2023-09-13T17:58:54,779 from ../../src/formats/adfformat.cpp:29: 2023-09-13T17:58:54,780 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-13T17:58:54,781 131 | struct binary_function 2023-09-13T17:58:54,781 | ^~~~~~~~~~~~~~~ 2023-09-13T17:58:54,782 In file included from /usr/include/c++/12/vector:70, 2023-09-13T17:58:54,783 from ../../src/formats/adfformat.cpp:31: 2023-09-13T17:58:54,784 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-13T17:58:54,785 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:58:54,785 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:58:54,787 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:54,787 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:58:54,788 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:54,788 inlined from ‘virtual bool OpenBabel::ADFDftbFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/adfformat.cpp:602:30: 2023-09-13T17:58:54,789 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:54,790 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:54,790 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:54,791 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:58:54,793 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:54,794 inlined from ‘virtual bool OpenBabel::ADFDftbFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/adfformat.cpp:606:30: 2023-09-13T17:58:54,795 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:54,796 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:54,797 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:54,798 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:58:54,799 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:54,799 inlined from ‘virtual bool OpenBabel::ADFBandFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/adfformat.cpp:460:28: 2023-09-13T17:58:54,800 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:54,801 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:54,802 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:54,803 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-13T17:58:54,803 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:54,804 inlined from ‘virtual bool OpenBabel::ADFBandFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/adfformat.cpp:464:28: 2023-09-13T17:58:54,805 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:54,806 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:54,807 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:54,807 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::OBT41Format::AtomData}; _Tp = OpenBabel::OBT41Format::AtomData; _Alloc = std::allocator]’: 2023-09-13T17:58:54,808 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-13T17:58:54,809 439 | vector<_Tp, _Alloc>:: 2023-09-13T17:58:54,809 | ^~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:54,810 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::OBT41Format::AtomData}; _Tp = OpenBabel::OBT41Format::AtomData; _Alloc = std::allocator]’, 2023-09-13T17:58:54,811 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::OBT41Format::AtomData; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-13T17:58:54,812 inlined from ‘bool OpenBabel::OBT41Format::ReadASCII(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ../../src/formats/adfformat.cpp:897:26: 2023-09-13T17:58:54,812 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-13T17:58:54,813 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-13T17:58:54,814 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-13T17:58:54,814 ninja: build stopped: subcommand failed. 2023-09-13T17:58:54,816 ==> Configuring: 2023-09-13T17:58:54,816 $ cmake -S /tmp/pip-wheel-y9mcu922/openbabel-wheel_3af9dde34383406984ff9db5d1f7ff2b -B /tmp/pip-wheel-y9mcu922/openbabel-wheel_3af9dde34383406984ff9db5d1f7ff2b/build/temp.linux-armv7l-cpython-311_OpenBabel -GNinja -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX:PATH=/tmp/pip-wheel-y9mcu922/openbabel-wheel_3af9dde34383406984ff9db5d1f7ff2b/build/lib.linux-armv7l-cpython-311/openbabel -DCMAKE_MAKE_PROGRAM=/tmp/pip-build-env-0zj1sn8_/overlay/local/bin/ninja -DPYTHON_EXECUTABLE=/usr/bin/python3 -DCMAKE_BUILD_TYPE=Release -DWITH_INCHI=ON -DPYTHON_BINDINGS=ON -DRUN_SWIG=ON -DBUILD_BY_PIP=ON 2023-09-13T17:58:54,817 ==> Building: 2023-09-13T17:58:54,818 $ cmake --build /tmp/pip-wheel-y9mcu922/openbabel-wheel_3af9dde34383406984ff9db5d1f7ff2b/build/temp.linux-armv7l-cpython-311_OpenBabel --config Release 2023-09-13T17:58:54,819 ==> Installing: 2023-09-13T17:58:54,820 $ cmake --install /tmp/pip-wheel-y9mcu922/openbabel-wheel_3af9dde34383406984ff9db5d1f7ff2b/build/temp.linux-armv7l-cpython-311_OpenBabel 2023-09-13T17:58:54,821 Traceback (most recent call last): 2023-09-13T17:58:54,822 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in 2023-09-13T17:58:54,822 main() 2023-09-13T17:58:54,823 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main 2023-09-13T17:58:54,824 json_out['return_val'] = hook(**hook_input['kwargs']) 2023-09-13T17:58:54,824 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-13T17:58:54,825 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 251, in build_wheel 2023-09-13T17:58:54,825 return _build_backend().build_wheel(wheel_directory, config_settings, 2023-09-13T17:58:54,826 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-13T17:58:54,827 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 434, in build_wheel 2023-09-13T17:58:54,827 return self._build_with_temp_dir( 2023-09-13T17:58:54,828 ^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-13T17:58:54,828 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 419, in _build_with_temp_dir 2023-09-13T17:58:54,829 self.run_setup() 2023-09-13T17:58:54,829 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 507, in run_setup 2023-09-13T17:58:54,830 super(_BuildMetaLegacyBackend, self).run_setup(setup_script=setup_script) 2023-09-13T17:58:54,830 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 341, in run_setup 2023-09-13T17:58:54,831 exec(code, locals()) 2023-09-13T17:58:54,831 File "", line 15, in 2023-09-13T17:58:54,832 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/setuptools/__init__.py", line 103, in setup 2023-09-13T17:58:54,833 return distutils.core.setup(**attrs) 2023-09-13T17:58:54,833 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-13T17:58:54,834 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 185, in setup 2023-09-13T17:58:54,834 return run_commands(dist) 2023-09-13T17:58:54,835 ^^^^^^^^^^^^^^^^^^ 2023-09-13T17:58:54,835 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 201, in run_commands 2023-09-13T17:58:54,836 dist.run_commands() 2023-09-13T17:58:54,836 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 969, in run_commands 2023-09-13T17:58:54,837 self.run_command(cmd) 2023-09-13T17:58:54,837 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py", line 989, in run_command 2023-09-13T17:58:54,838 super().run_command(command) 2023-09-13T17:58:54,839 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command 2023-09-13T17:58:54,840 cmd_obj.run() 2023-09-13T17:58:54,841 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/wheel/bdist_wheel.py", line 364, in run 2023-09-13T17:58:54,842 self.run_command("build") 2023-09-13T17:58:54,843 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 318, in run_command 2023-09-13T17:58:54,844 self.distribution.run_command(command) 2023-09-13T17:58:54,845 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py", line 989, in run_command 2023-09-13T17:58:54,846 super().run_command(command) 2023-09-13T17:58:54,846 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command 2023-09-13T17:58:54,847 cmd_obj.run() 2023-09-13T17:58:54,848 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/command/build.py", line 131, in run 2023-09-13T17:58:54,849 self.run_command(cmd_name) 2023-09-13T17:58:54,850 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 318, in run_command 2023-09-13T17:58:54,850 self.distribution.run_command(command) 2023-09-13T17:58:54,851 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py", line 989, in run_command 2023-09-13T17:58:54,852 super().run_command(command) 2023-09-13T17:58:54,853 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command 2023-09-13T17:58:54,854 cmd_obj.run() 2023-09-13T17:58:54,855 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/cmake_build_extension/build_extension.py", line 113, in run 2023-09-13T17:58:54,855 self.build_extension(ext) 2023-09-13T17:58:54,856 File "/tmp/pip-build-env-0zj1sn8_/overlay/local/lib/python3.11/dist-packages/cmake_build_extension/build_extension.py", line 230, in build_extension 2023-09-13T17:58:54,856 subprocess.check_call(build_command) 2023-09-13T17:58:54,857 File "/usr/lib/python3.11/subprocess.py", line 413, in check_call 2023-09-13T17:58:54,858 raise CalledProcessError(retcode, cmd) 2023-09-13T17:58:54,858 subprocess.CalledProcessError: Command '['cmake', '--build', '/tmp/pip-wheel-y9mcu922/openbabel-wheel_3af9dde34383406984ff9db5d1f7ff2b/build/temp.linux-armv7l-cpython-311_OpenBabel', '--config', 'Release']' returned non-zero exit status 1. 2023-09-13T17:58:54,933 ERROR: [present-rich] Building wheel for openbabel-wheel (pyproject.toml) exited with 1 2023-09-13T17:58:54,947 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpbjriiux8[/] 2023-09-13T17:58:54,947 [bold magenta]cwd[/]: /tmp/pip-wheel-y9mcu922/openbabel-wheel_3af9dde34383406984ff9db5d1f7ff2b 2023-09-13T17:58:54,948 Building wheel for openbabel-wheel (pyproject.toml): finished with status 'error' 2023-09-13T17:58:54,950 ERROR: Failed building wheel for openbabel-wheel 2023-09-13T17:58:54,952 Failed to build openbabel-wheel 2023-09-13T17:58:54,954 ERROR: Failed to build one or more wheels 2023-09-13T17:58:54,955 Exception information: 2023-09-13T17:58:54,955 Traceback (most recent call last): 2023-09-13T17:58:54,955 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-13T17:58:54,955 status = run_func(*args) 2023-09-13T17:58:54,955 ^^^^^^^^^^^^^^^ 2023-09-13T17:58:54,955 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-13T17:58:54,955 return func(self, options, args) 2023-09-13T17:58:54,955 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-13T17:58:54,955 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-13T17:58:54,955 raise CommandError("Failed to build one or more wheels") 2023-09-13T17:58:54,955 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-13T17:58:54,959 Removed build tracker: '/tmp/pip-build-tracker-znswb2f1'