2023-09-13T19:54:50,706 Created temporary directory: /tmp/pip-build-tracker-j9kqvdai 2023-09-13T19:54:50,707 Initialized build tracking at /tmp/pip-build-tracker-j9kqvdai 2023-09-13T19:54:50,707 Created build tracker: /tmp/pip-build-tracker-j9kqvdai 2023-09-13T19:54:50,708 Entered build tracker: /tmp/pip-build-tracker-j9kqvdai 2023-09-13T19:54:50,709 Created temporary directory: /tmp/pip-wheel-a7mhp58v 2023-09-13T19:54:50,712 Created temporary directory: /tmp/pip-ephem-wheel-cache-r45iugxz 2023-09-13T19:54:50,733 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-13T19:54:50,736 2 location(s) to search for versions of gff3tool: 2023-09-13T19:54:50,736 * https://pypi.org/simple/gff3tool/ 2023-09-13T19:54:50,736 * https://www.piwheels.org/simple/gff3tool/ 2023-09-13T19:54:50,737 Fetching project page and analyzing links: https://pypi.org/simple/gff3tool/ 2023-09-13T19:54:50,738 Getting page https://pypi.org/simple/gff3tool/ 2023-09-13T19:54:50,739 Found index url https://pypi.org/simple/ 2023-09-13T19:54:50,958 Fetched page https://pypi.org/simple/gff3tool/ as application/vnd.pypi.simple.v1+json 2023-09-13T19:54:50,961 Found link https://files.pythonhosted.org/packages/71/33/dac2be6f38dd40d4f914814e7afe2cc5391f1bfecc77439612284de537a1/gff3tool-1.1.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.1.0 2023-09-13T19:54:50,962 Found link https://files.pythonhosted.org/packages/a1/f1/6630128adac220623c28a5f5ed4e6cfa070589143a0b2151237c20923149/gff3tool-1.3.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.3.0 2023-09-13T19:54:50,962 Found link https://files.pythonhosted.org/packages/71/cb/9b9d73fd7171571b9ad063fa3a6aac684aeebc7e958a37e2423c690d5110/gff3tool-1.4.1.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.1 2023-09-13T19:54:50,963 Found link https://files.pythonhosted.org/packages/23/bb/0b7952dfc7fb8992e6d7349eb55cbbe51e6c0750d57e33c01de5be39da46/gff3tool-1.4.2.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.2 2023-09-13T19:54:50,963 Found link https://files.pythonhosted.org/packages/7c/79/b59b3e47735edfe2ac2a9334c8e2836d63c0899b51f9badc416ae07e8353/gff3tool-1.4.3.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.3 2023-09-13T19:54:50,964 Found link https://files.pythonhosted.org/packages/cf/33/8cd85764a601bf3a5e0116f8b457c308294ec9c25139aacade6e21860335/gff3tool-1.4.4.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.4 2023-09-13T19:54:50,965 Skipping link: No binaries permitted for gff3tool: https://files.pythonhosted.org/packages/2a/4c/a16d0aae5fa870fc7630eb0536042fd3e0494467efd9f27cea6090cdbbe0/gff3tool-1.4.5-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/gff3tool/) 2023-09-13T19:54:50,965 Found link https://files.pythonhosted.org/packages/f8/78/330f714b6e771d69079128a44f61830c9ce22969eaa3b176dafb94c48809/gff3tool-1.4.5.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.5 2023-09-13T19:54:50,966 Found link https://files.pythonhosted.org/packages/8a/82/0f528dc498d7fdfbd6b8a968ed1cfee43ffa55461e77830a22f606aea3bb/gff3tool-2.0.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.0.0 2023-09-13T19:54:50,967 Found link https://files.pythonhosted.org/packages/aa/b3/cecb768a048bf2e661f0e77bf3208ed8ef203acbd93107b1f00d7b57da1e/gff3tool-2.0.1.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.0.1 2023-09-13T19:54:50,968 Found link https://files.pythonhosted.org/packages/21/2e/7e77d34adec82b4d896c8959c7993534810f8bc43cc374e984e5635bbf94/gff3tool-2.0.3.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.0.3 2023-09-13T19:54:50,968 Found link https://files.pythonhosted.org/packages/7f/12/d177f42f6e3a73dae82fd5cc89e7404de121ab381e5454ca8da11110d88a/gff3tool-2.1.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.1.0 2023-09-13T19:54:50,969 Fetching project page and analyzing links: https://www.piwheels.org/simple/gff3tool/ 2023-09-13T19:54:50,970 Getting page https://www.piwheels.org/simple/gff3tool/ 2023-09-13T19:54:50,971 Found index url https://www.piwheels.org/simple/ 2023-09-13T19:54:51,246 Fetched page https://www.piwheels.org/simple/gff3tool/ as text/html 2023-09-13T19:54:51,260 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp39-cp39-linux_armv7l.whl#sha256=acb5d3cb45afefe5eab3c74db7b776dda5cf59ce38bb15cbde8edddd6079c343 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,261 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp39-cp39-linux_armv6l.whl#sha256=acb5d3cb45afefe5eab3c74db7b776dda5cf59ce38bb15cbde8edddd6079c343 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,262 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp37-cp37m-linux_armv7l.whl#sha256=cfe6edebe5cd63bcd5cd38e34377d8c34eb8fdc675d148da65e75d4399db5ff6 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,262 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp37-cp37m-linux_armv6l.whl#sha256=cfe6edebe5cd63bcd5cd38e34377d8c34eb8fdc675d148da65e75d4399db5ff6 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,263 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp35-cp35m-linux_armv7l.whl#sha256=5eef1c37d908cd2d30f368726348cf85a26dc4d95abc8131735de5c720d7975b (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,263 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp35-cp35m-linux_armv6l.whl#sha256=5eef1c37d908cd2d30f368726348cf85a26dc4d95abc8131735de5c720d7975b (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,264 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp39-cp39-linux_armv7l.whl#sha256=66d9164d8245e216f080754a89df8cda4192f034e99a32532198ccf3c38f6faa (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,265 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp39-cp39-linux_armv6l.whl#sha256=66d9164d8245e216f080754a89df8cda4192f034e99a32532198ccf3c38f6faa (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,265 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp37-cp37m-linux_armv7l.whl#sha256=79c3e33604c37bc449a60874dbc1520dde9140874fb47948d3a087eeec48f52f (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,266 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp37-cp37m-linux_armv6l.whl#sha256=79c3e33604c37bc449a60874dbc1520dde9140874fb47948d3a087eeec48f52f (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,267 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp35-cp35m-linux_armv7l.whl#sha256=ce80154080e74e3fb30b340e7a76661a4b8f3d78c6104490aa6da9c40fdc91d6 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,267 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp35-cp35m-linux_armv6l.whl#sha256=ce80154080e74e3fb30b340e7a76661a4b8f3d78c6104490aa6da9c40fdc91d6 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,268 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp311-cp311-linux_armv7l.whl#sha256=a9753f3c49fd1cb2cdd4a192e12efbded3d886fc08011031e9ebaeaf96095389 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,269 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp311-cp311-linux_armv6l.whl#sha256=a9753f3c49fd1cb2cdd4a192e12efbded3d886fc08011031e9ebaeaf96095389 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,269 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp39-cp39-linux_armv7l.whl#sha256=a89f1ece9e20b3183b0eba298b269f1c4b0109af60b409f5d3f7bc0be4914bfd (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,270 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp39-cp39-linux_armv6l.whl#sha256=a89f1ece9e20b3183b0eba298b269f1c4b0109af60b409f5d3f7bc0be4914bfd (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,271 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp35-cp35m-linux_armv7l.whl#sha256=baa47b3147a931daf4958a447f96979e4448707996cc9d60ac45ad3ebb8e9c1f (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,272 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp35-cp35m-linux_armv6l.whl#sha256=baa47b3147a931daf4958a447f96979e4448707996cc9d60ac45ad3ebb8e9c1f (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,272 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp34-cp34m-linux_armv7l.whl#sha256=fa519097d18d8d8239808e305f0bb0549b3dd93a72ed8d5ea6f45d785e6bef11 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,273 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp34-cp34m-linux_armv6l.whl#sha256=fa519097d18d8d8239808e305f0bb0549b3dd93a72ed8d5ea6f45d785e6bef11 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,273 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp37-cp37m-linux_armv6l.whl#sha256=88be7d8c71c322212fdc989a672f6e0f10ed299cb5615d7d34f70058a0d6f928 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,274 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp37-cp37m-linux_armv7l.whl#sha256=88be7d8c71c322212fdc989a672f6e0f10ed299cb5615d7d34f70058a0d6f928 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,275 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp311-cp311-linux_armv7l.whl#sha256=036c36c64ae995bbd9b6234e9f0b2fdaed36e2a4869fa2885c0fa449d01f6bd1 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,275 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp311-cp311-linux_armv6l.whl#sha256=036c36c64ae995bbd9b6234e9f0b2fdaed36e2a4869fa2885c0fa449d01f6bd1 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,276 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=7dbbba3501c691ddb06f2ace77ee9897d1e51e32f6e05430923d4a5e53b86174 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,277 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=7dbbba3501c691ddb06f2ace77ee9897d1e51e32f6e05430923d4a5e53b86174 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,277 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp35-cp35m-linux_armv7l.whl#sha256=a6d1a1bf91d08ad305f7476e9a3439e57749b4091c112cbf4f73569a4f711a68 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,278 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp35-cp35m-linux_armv6l.whl#sha256=a6d1a1bf91d08ad305f7476e9a3439e57749b4091c112cbf4f73569a4f711a68 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,279 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=0be9d0d0079481fcbd19198c4fba52c6703b11b043e14bc17cd9b7863857efde (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,279 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=0be9d0d0079481fcbd19198c4fba52c6703b11b043e14bc17cd9b7863857efde (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,280 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp34-cp34m-linux_armv6l.whl#sha256=a6197f7982794de21eb411313c8591f643ea19667efba72907a0fbafd47ca4e7 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,281 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp34-cp34m-linux_armv7l.whl#sha256=a6197f7982794de21eb411313c8591f643ea19667efba72907a0fbafd47ca4e7 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,282 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-1.3.0-py3-none-any.whl#sha256=f993f46b60c812a88426ea96ad2c23aa521aee04c8bdad4016e21d03d6186291 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,282 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-1.1.0-py3-none-any.whl#sha256=f5eefabf7e1b27382cef033e939fd956121ebf02ae4e7085b83ade5f98c69d90 (from https://www.piwheels.org/simple/gff3tool/) 2023-09-13T19:54:51,283 Skipping link: not a file: https://www.piwheels.org/simple/gff3tool/ 2023-09-13T19:54:51,283 Skipping link: not a file: https://pypi.org/simple/gff3tool/ 2023-09-13T19:54:51,312 Given no hashes to check 1 links for project 'gff3tool': discarding no candidates 2023-09-13T19:54:51,338 Collecting gff3tool==2.0.3 2023-09-13T19:54:51,341 Created temporary directory: /tmp/pip-unpack-t5lyk19q 2023-09-13T19:54:52,072 Downloading gff3tool-2.0.3.tar.gz (83 kB) 2023-09-13T19:54:52,278 Added gff3tool==2.0.3 from https://files.pythonhosted.org/packages/21/2e/7e77d34adec82b4d896c8959c7993534810f8bc43cc374e984e5635bbf94/gff3tool-2.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-j9kqvdai' 2023-09-13T19:54:52,280 Running setup.py (path:/tmp/pip-wheel-a7mhp58v/gff3tool_9bb90e2599124aa49763ef541c58a13d/setup.py) egg_info for package gff3tool 2023-09-13T19:54:52,281 Created temporary directory: /tmp/pip-pip-egg-info-rqr2kvss 2023-09-13T19:54:52,282 Preparing metadata (setup.py): started 2023-09-13T19:54:52,283 Running command python setup.py egg_info 2023-09-13T19:54:53,004 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-13T19:54:53,004 !! 2023-09-13T19:54:53,006 ******************************************************************************** 2023-09-13T19:54:53,006 Usage of dash-separated 'dist-dir' will not be supported in future 2023-09-13T19:54:53,007 versions. Please use the underscore name 'dist_dir' instead. 2023-09-13T19:54:53,008 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-13T19:54:53,008 or your builds will no longer be supported. 2023-09-13T19:54:53,010 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-13T19:54:53,010 ******************************************************************************** 2023-09-13T19:54:53,011 !! 2023-09-13T19:54:53,012 opt = self.warn_dash_deprecation(opt, section) 2023-09-13T19:54:53,306 running egg_info 2023-09-13T19:54:53,307 creating /tmp/pip-pip-egg-info-rqr2kvss/gff3tool.egg-info 2023-09-13T19:54:53,331 writing /tmp/pip-pip-egg-info-rqr2kvss/gff3tool.egg-info/PKG-INFO 2023-09-13T19:54:53,334 writing dependency_links to /tmp/pip-pip-egg-info-rqr2kvss/gff3tool.egg-info/dependency_links.txt 2023-09-13T19:54:53,336 writing entry points to /tmp/pip-pip-egg-info-rqr2kvss/gff3tool.egg-info/entry_points.txt 2023-09-13T19:54:53,338 writing top-level names to /tmp/pip-pip-egg-info-rqr2kvss/gff3tool.egg-info/top_level.txt 2023-09-13T19:54:53,339 writing manifest file '/tmp/pip-pip-egg-info-rqr2kvss/gff3tool.egg-info/SOURCES.txt' 2023-09-13T19:54:53,396 reading manifest file '/tmp/pip-pip-egg-info-rqr2kvss/gff3tool.egg-info/SOURCES.txt' 2023-09-13T19:54:53,397 reading manifest template 'MANIFEST.in' 2023-09-13T19:54:53,405 writing manifest file '/tmp/pip-pip-egg-info-rqr2kvss/gff3tool.egg-info/SOURCES.txt' 2023-09-13T19:54:53,521 Preparing metadata (setup.py): finished with status 'done' 2023-09-13T19:54:53,525 Source in /tmp/pip-wheel-a7mhp58v/gff3tool_9bb90e2599124aa49763ef541c58a13d has version 2.0.3, which satisfies requirement gff3tool==2.0.3 from https://files.pythonhosted.org/packages/21/2e/7e77d34adec82b4d896c8959c7993534810f8bc43cc374e984e5635bbf94/gff3tool-2.0.3.tar.gz 2023-09-13T19:54:53,525 Removed gff3tool==2.0.3 from https://files.pythonhosted.org/packages/21/2e/7e77d34adec82b4d896c8959c7993534810f8bc43cc374e984e5635bbf94/gff3tool-2.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-j9kqvdai' 2023-09-13T19:54:53,530 Created temporary directory: /tmp/pip-unpack-1lsmtz8r 2023-09-13T19:54:53,531 Created temporary directory: /tmp/pip-unpack-dauxdh4o 2023-09-13T19:54:53,534 Building wheels for collected packages: gff3tool 2023-09-13T19:54:53,538 Created temporary directory: /tmp/pip-wheel-ibxqgifg 2023-09-13T19:54:53,538 Building wheel for gff3tool (setup.py): started 2023-09-13T19:54:53,539 Destination directory: /tmp/pip-wheel-ibxqgifg 2023-09-13T19:54:53,540 Running command python setup.py bdist_wheel 2023-09-13T19:54:54,266 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-13T19:54:54,267 !! 2023-09-13T19:54:54,268 ******************************************************************************** 2023-09-13T19:54:54,268 Usage of dash-separated 'dist-dir' will not be supported in future 2023-09-13T19:54:54,269 versions. Please use the underscore name 'dist_dir' instead. 2023-09-13T19:54:54,270 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-13T19:54:54,271 or your builds will no longer be supported. 2023-09-13T19:54:54,272 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-13T19:54:54,272 ******************************************************************************** 2023-09-13T19:54:54,274 !! 2023-09-13T19:54:54,274 opt = self.warn_dash_deprecation(opt, section) 2023-09-13T19:54:54,542 running bdist_wheel 2023-09-13T19:54:54,612 running build 2023-09-13T19:55:34,035 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-13T19:55:34,036 !! 2023-09-13T19:55:34,037 ******************************************************************************** 2023-09-13T19:55:34,037 Please avoid running ``setup.py`` directly. 2023-09-13T19:55:34,038 Instead, use pypa/build, pypa/installer or other 2023-09-13T19:55:34,038 standards-based tools. 2023-09-13T19:55:34,040 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-13T19:55:34,040 ******************************************************************************** 2023-09-13T19:55:34,041 !! 2023-09-13T19:55:34,042 self.initialize_options() 2023-09-13T19:55:34,060 installing to build/bdist.linux-armv7l/wheel 2023-09-13T19:55:34,061 running install 2023-09-13T19:55:34,085 running install_lib 2023-09-13T19:55:34,108 running build_py 2023-09-13T19:55:34,136 creating build 2023-09-13T19:55:34,136 creating build/lib 2023-09-13T19:55:34,137 creating build/lib/gff3tool 2023-09-13T19:55:34,138 copying gff3tool/__init__.py -> build/lib/gff3tool 2023-09-13T19:55:34,141 creating build/lib/gff3tool/bin 2023-09-13T19:55:34,142 copying gff3tool/bin/version.py -> build/lib/gff3tool/bin 2023-09-13T19:55:34,143 copying gff3tool/bin/gff3_QC.py -> build/lib/gff3tool/bin 2023-09-13T19:55:34,146 copying gff3tool/bin/gff3_sort.py -> build/lib/gff3tool/bin 2023-09-13T19:55:34,148 copying gff3tool/bin/gff3_merge.py -> build/lib/gff3tool/bin 2023-09-13T19:55:34,150 copying gff3tool/bin/gff3_to_fasta.py -> build/lib/gff3tool/bin 2023-09-13T19:55:34,153 copying gff3tool/bin/__init__.py -> build/lib/gff3tool/bin 2023-09-13T19:55:34,155 copying gff3tool/bin/gff3_fix.py -> build/lib/gff3tool/bin 2023-09-13T19:55:34,157 creating build/lib/gff3tool/lib 2023-09-13T19:55:34,158 copying gff3tool/lib/utils.py -> build/lib/gff3tool/lib 2023-09-13T19:55:34,160 copying gff3tool/lib/replace_OGS.py -> build/lib/gff3tool/lib 2023-09-13T19:55:34,163 copying gff3tool/lib/__init__.py -> build/lib/gff3tool/lib 2023-09-13T19:55:34,164 copying gff3tool/lib/id_processor.py -> build/lib/gff3tool/lib 2023-09-13T19:55:34,166 copying gff3tool/lib/gff3_ID_generator.py -> build/lib/gff3tool/lib 2023-09-13T19:55:34,169 creating build/lib/gff3tool/lib/gff3 2023-09-13T19:55:34,170 copying gff3tool/lib/gff3/gff3.py -> build/lib/gff3tool/lib/gff3 2023-09-13T19:55:34,173 copying gff3tool/lib/gff3/__init__.py -> build/lib/gff3tool/lib/gff3 2023-09-13T19:55:34,175 creating build/lib/gff3tool/lib/gff3_fix 2023-09-13T19:55:34,176 copying gff3tool/lib/gff3_fix/fix.py -> build/lib/gff3tool/lib/gff3_fix 2023-09-13T19:55:34,179 copying gff3tool/lib/gff3_fix/__init__.py -> build/lib/gff3tool/lib/gff3_fix 2023-09-13T19:55:34,181 creating build/lib/gff3tool/lib/function4gff 2023-09-13T19:55:34,182 copying gff3tool/lib/function4gff/function4gff.py -> build/lib/gff3tool/lib/function4gff 2023-09-13T19:55:34,184 copying gff3tool/lib/function4gff/__init__.py -> build/lib/gff3tool/lib/function4gff 2023-09-13T19:55:34,187 creating build/lib/gff3tool/lib/single_feature 2023-09-13T19:55:34,187 copying gff3tool/lib/single_feature/single_feature.py -> build/lib/gff3tool/lib/single_feature 2023-09-13T19:55:34,190 copying gff3tool/lib/single_feature/__init__.py -> build/lib/gff3tool/lib/single_feature 2023-09-13T19:55:34,192 creating build/lib/gff3tool/lib/inter_model 2023-09-13T19:55:34,193 copying gff3tool/lib/inter_model/inter_model.py -> build/lib/gff3tool/lib/inter_model 2023-09-13T19:55:34,195 copying gff3tool/lib/inter_model/__init__.py -> build/lib/gff3tool/lib/inter_model 2023-09-13T19:55:34,198 creating build/lib/gff3tool/lib/gff3_merge 2023-09-13T19:55:34,199 copying gff3tool/lib/gff3_merge/auto_replace_tag.py -> build/lib/gff3tool/lib/gff3_merge 2023-09-13T19:55:34,201 copying gff3tool/lib/gff3_merge/__init__.py -> build/lib/gff3tool/lib/gff3_merge 2023-09-13T19:55:34,203 copying gff3tool/lib/gff3_merge/revision.py -> build/lib/gff3tool/lib/gff3_merge 2023-09-13T19:55:34,205 copying gff3tool/lib/gff3_merge/merge.py -> build/lib/gff3tool/lib/gff3_merge 2023-09-13T19:55:34,208 creating build/lib/gff3tool/lib/ERROR 2023-09-13T19:55:34,209 copying gff3tool/lib/ERROR/ERROR.py -> build/lib/gff3tool/lib/ERROR 2023-09-13T19:55:34,211 copying gff3tool/lib/ERROR/__init__.py -> build/lib/gff3tool/lib/ERROR 2023-09-13T19:55:34,213 creating build/lib/gff3tool/lib/intra_model 2023-09-13T19:55:34,214 copying gff3tool/lib/intra_model/intra_model.py -> build/lib/gff3tool/lib/intra_model 2023-09-13T19:55:34,217 copying gff3tool/lib/intra_model/__init__.py -> build/lib/gff3tool/lib/intra_model 2023-09-13T19:55:34,218 running egg_info 2023-09-13T19:55:34,275 writing gff3tool.egg-info/PKG-INFO 2023-09-13T19:55:34,278 writing dependency_links to gff3tool.egg-info/dependency_links.txt 2023-09-13T19:55:34,280 writing entry points to gff3tool.egg-info/entry_points.txt 2023-09-13T19:55:34,282 writing top-level names to gff3tool.egg-info/top_level.txt 2023-09-13T19:55:34,312 reading manifest file 'gff3tool.egg-info/SOURCES.txt' 2023-09-13T19:55:34,315 reading manifest template 'MANIFEST.in' 2023-09-13T19:55:34,326 writing manifest file 'gff3tool.egg-info/SOURCES.txt' 2023-09-13T19:55:34,328 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'gff3tool.lib.auto_assignment' is absent from the `packages` configuration. 2023-09-13T19:55:34,329 !! 2023-09-13T19:55:34,330 ******************************************************************************** 2023-09-13T19:55:34,330 ############################ 2023-09-13T19:55:34,330 # Package would be ignored # 2023-09-13T19:55:34,331 ############################ 2023-09-13T19:55:34,331 Python recognizes 'gff3tool.lib.auto_assignment' as an importable package[^1], 2023-09-13T19:55:34,332 but it is absent from setuptools' `packages` configuration. 2023-09-13T19:55:34,333 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-13T19:55:34,334 package, please make sure that 'gff3tool.lib.auto_assignment' is explicitly added 2023-09-13T19:55:34,334 to the `packages` configuration field. 2023-09-13T19:55:34,335 Alternatively, you can also rely on setuptools' discovery methods 2023-09-13T19:55:34,335 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-13T19:55:34,336 instead of `find_packages(...)`/`find:`). 2023-09-13T19:55:34,337 You can read more about "package discovery" on setuptools documentation page: 2023-09-13T19:55:34,338 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-13T19:55:34,339 If you don't want 'gff3tool.lib.auto_assignment' to be distributed and are 2023-09-13T19:55:34,339 already explicitly excluding 'gff3tool.lib.auto_assignment' via 2023-09-13T19:55:34,339 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-13T19:55:34,340 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-13T19:55:34,340 combination with a more fine grained `package-data` configuration. 2023-09-13T19:55:34,341 You can read more about "package data files" on setuptools documentation page: 2023-09-13T19:55:34,342 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-13T19:55:34,344 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-13T19:55:34,344 even if it does not contain any `.py` files. 2023-09-13T19:55:34,345 On the other hand, currently there is no concept of package data 2023-09-13T19:55:34,346 directory, all directories are treated like packages. 2023-09-13T19:55:34,346 ******************************************************************************** 2023-09-13T19:55:34,347 !! 2023-09-13T19:55:34,348 check.warn(importable) 2023-09-13T19:55:34,348 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'gff3tool.lib.check_gene_parent' is absent from the `packages` configuration. 2023-09-13T19:55:34,349 !! 2023-09-13T19:55:34,350 ******************************************************************************** 2023-09-13T19:55:34,350 ############################ 2023-09-13T19:55:34,351 # Package would be ignored # 2023-09-13T19:55:34,351 ############################ 2023-09-13T19:55:34,352 Python recognizes 'gff3tool.lib.check_gene_parent' as an importable package[^1], 2023-09-13T19:55:34,352 but it is absent from setuptools' `packages` configuration. 2023-09-13T19:55:34,353 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-13T19:55:34,354 package, please make sure that 'gff3tool.lib.check_gene_parent' is explicitly added 2023-09-13T19:55:34,354 to the `packages` configuration field. 2023-09-13T19:55:34,355 Alternatively, you can also rely on setuptools' discovery methods 2023-09-13T19:55:34,356 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-13T19:55:34,356 instead of `find_packages(...)`/`find:`). 2023-09-13T19:55:34,358 You can read more about "package discovery" on setuptools documentation page: 2023-09-13T19:55:34,358 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-13T19:55:34,359 If you don't want 'gff3tool.lib.check_gene_parent' to be distributed and are 2023-09-13T19:55:34,360 already explicitly excluding 'gff3tool.lib.check_gene_parent' via 2023-09-13T19:55:34,360 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-13T19:55:34,361 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-13T19:55:34,361 combination with a more fine grained `package-data` configuration. 2023-09-13T19:55:34,362 You can read more about "package data files" on setuptools documentation page: 2023-09-13T19:55:34,363 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-13T19:55:34,364 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-13T19:55:34,365 even if it does not contain any `.py` files. 2023-09-13T19:55:34,365 On the other hand, currently there is no concept of package data 2023-09-13T19:55:34,366 directory, all directories are treated like packages. 2023-09-13T19:55:34,366 ******************************************************************************** 2023-09-13T19:55:34,367 !! 2023-09-13T19:55:34,367 check.warn(importable) 2023-09-13T19:55:34,368 copying gff3tool/lib.md -> build/lib/gff3tool 2023-09-13T19:55:34,368 creating build/lib/gff3tool/lib/auto_assignment 2023-09-13T19:55:34,369 copying gff3tool/lib/auto_assignment/create_annotation_summaries_nov21-7.pl -> build/lib/gff3tool/lib/auto_assignment 2023-09-13T19:55:34,370 copying gff3tool/lib/auto_assignment/find_match.pl -> build/lib/gff3tool/lib/auto_assignment 2023-09-13T19:55:34,370 copying gff3tool/lib/auto_assignment/gen_spreadsheet.pl -> build/lib/gff3tool/lib/auto_assignment 2023-09-13T19:55:34,371 creating build/lib/gff3tool/lib/check_gene_parent 2023-09-13T19:55:34,372 copying gff3tool/lib/check_gene_parent/find_wrongly_split_gene_parent.pl -> build/lib/gff3tool/lib/check_gene_parent 2023-09-13T19:55:34,372 creating build/lib/gff3tool/lib/ncbi-blast+ 2023-09-13T19:55:34,373 creating build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:34,374 copying gff3tool/lib/ncbi-blast+/bin/blast_formatter -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:34,820 copying gff3tool/lib/ncbi-blast+/bin/blastdb_aliastool -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:35,123 copying gff3tool/lib/ncbi-blast+/bin/blastdbcheck -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:35,443 copying gff3tool/lib/ncbi-blast+/bin/blastdbcmd -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:35,867 copying gff3tool/lib/ncbi-blast+/bin/blastn -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:36,339 copying gff3tool/lib/ncbi-blast+/bin/blastp -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:36,791 copying gff3tool/lib/ncbi-blast+/bin/blastx -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:37,246 copying gff3tool/lib/ncbi-blast+/bin/convert2blastmask -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:37,547 copying gff3tool/lib/ncbi-blast+/bin/deltablast -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:38,024 copying gff3tool/lib/ncbi-blast+/bin/dustmasker -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:38,355 copying gff3tool/lib/ncbi-blast+/bin/legacy_blast.pl -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:38,359 copying gff3tool/lib/ncbi-blast+/bin/makeblastdb -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:38,678 copying gff3tool/lib/ncbi-blast+/bin/makembindex -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:38,991 copying gff3tool/lib/ncbi-blast+/bin/makeprofiledb -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:39,309 copying gff3tool/lib/ncbi-blast+/bin/psiblast -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:39,841 copying gff3tool/lib/ncbi-blast+/bin/rpsblast -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:40,347 copying gff3tool/lib/ncbi-blast+/bin/rpstblastn -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:40,816 copying gff3tool/lib/ncbi-blast+/bin/segmasker -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:41,106 copying gff3tool/lib/ncbi-blast+/bin/tblastn -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:41,548 copying gff3tool/lib/ncbi-blast+/bin/tblastx -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:41,992 copying gff3tool/lib/ncbi-blast+/bin/update_blastdb.pl -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:41,994 copying gff3tool/lib/ncbi-blast+/bin/windowmasker -> build/lib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:42,380 creating build/bdist.linux-armv7l 2023-09-13T19:55:42,380 creating build/bdist.linux-armv7l/wheel 2023-09-13T19:55:42,381 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data 2023-09-13T19:55:42,383 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib 2023-09-13T19:55:42,385 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool 2023-09-13T19:55:42,386 copying build/lib/gff3tool/lib.md -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool 2023-09-13T19:55:42,390 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/bin 2023-09-13T19:55:42,392 copying build/lib/gff3tool/bin/version.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/bin 2023-09-13T19:55:42,395 copying build/lib/gff3tool/bin/gff3_QC.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/bin 2023-09-13T19:55:42,399 copying build/lib/gff3tool/bin/gff3_sort.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/bin 2023-09-13T19:55:42,403 copying build/lib/gff3tool/bin/gff3_merge.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/bin 2023-09-13T19:55:42,408 copying build/lib/gff3tool/bin/gff3_to_fasta.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/bin 2023-09-13T19:55:42,414 copying build/lib/gff3tool/bin/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/bin 2023-09-13T19:55:42,415 copying build/lib/gff3tool/bin/gff3_fix.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/bin 2023-09-13T19:55:42,417 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib 2023-09-13T19:55:42,419 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3 2023-09-13T19:55:42,420 copying build/lib/gff3tool/lib/gff3/gff3.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3 2023-09-13T19:55:42,423 copying build/lib/gff3tool/lib/gff3/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3 2023-09-13T19:55:42,428 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/check_gene_parent 2023-09-13T19:55:42,429 copying build/lib/gff3tool/lib/check_gene_parent/find_wrongly_split_gene_parent.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/check_gene_parent 2023-09-13T19:55:42,432 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3_fix 2023-09-13T19:55:42,433 copying build/lib/gff3tool/lib/gff3_fix/fix.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3_fix 2023-09-13T19:55:42,436 copying build/lib/gff3tool/lib/gff3_fix/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3_fix 2023-09-13T19:55:42,438 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/function4gff 2023-09-13T19:55:42,439 copying build/lib/gff3tool/lib/function4gff/function4gff.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/function4gff 2023-09-13T19:55:42,441 copying build/lib/gff3tool/lib/function4gff/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/function4gff 2023-09-13T19:55:42,443 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+ 2023-09-13T19:55:42,444 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:42,445 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastn -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:42,927 copying build/lib/gff3tool/lib/ncbi-blast+/bin/rpsblast -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:43,423 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastdbcheck -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:43,761 copying build/lib/gff3tool/lib/ncbi-blast+/bin/windowmasker -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:44,102 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastx -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:44,547 copying build/lib/gff3tool/lib/ncbi-blast+/bin/psiblast -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:45,013 copying build/lib/gff3tool/lib/ncbi-blast+/bin/segmasker -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:45,325 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastdb_aliastool -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:45,615 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastdbcmd -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:46,023 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastp -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:46,487 copying build/lib/gff3tool/lib/ncbi-blast+/bin/convert2blastmask -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:46,787 copying build/lib/gff3tool/lib/ncbi-blast+/bin/makeblastdb -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:47,183 copying build/lib/gff3tool/lib/ncbi-blast+/bin/tblastx -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:47,692 copying build/lib/gff3tool/lib/ncbi-blast+/bin/tblastn -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:48,128 copying build/lib/gff3tool/lib/ncbi-blast+/bin/deltablast -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:49,000 copying build/lib/gff3tool/lib/ncbi-blast+/bin/update_blastdb.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:49,003 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blast_formatter -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:49,455 copying build/lib/gff3tool/lib/ncbi-blast+/bin/dustmasker -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:49,756 copying build/lib/gff3tool/lib/ncbi-blast+/bin/rpstblastn -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:50,452 copying build/lib/gff3tool/lib/ncbi-blast+/bin/makeprofiledb -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:50,783 copying build/lib/gff3tool/lib/ncbi-blast+/bin/legacy_blast.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:50,786 copying build/lib/gff3tool/lib/ncbi-blast+/bin/makembindex -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin 2023-09-13T19:55:51,168 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/single_feature 2023-09-13T19:55:51,169 copying build/lib/gff3tool/lib/single_feature/single_feature.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/single_feature 2023-09-13T19:55:51,172 copying build/lib/gff3tool/lib/single_feature/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/single_feature 2023-09-13T19:55:51,174 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/inter_model 2023-09-13T19:55:51,175 copying build/lib/gff3tool/lib/inter_model/inter_model.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/inter_model 2023-09-13T19:55:51,178 copying build/lib/gff3tool/lib/inter_model/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/inter_model 2023-09-13T19:55:51,180 copying build/lib/gff3tool/lib/utils.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib 2023-09-13T19:55:51,182 copying build/lib/gff3tool/lib/replace_OGS.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib 2023-09-13T19:55:51,185 copying build/lib/gff3tool/lib/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib 2023-09-13T19:55:51,187 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/auto_assignment 2023-09-13T19:55:51,188 copying build/lib/gff3tool/lib/auto_assignment/create_annotation_summaries_nov21-7.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/auto_assignment 2023-09-13T19:55:51,191 copying build/lib/gff3tool/lib/auto_assignment/find_match.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/auto_assignment 2023-09-13T19:55:51,194 copying build/lib/gff3tool/lib/auto_assignment/gen_spreadsheet.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/auto_assignment 2023-09-13T19:55:51,196 copying build/lib/gff3tool/lib/id_processor.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib 2023-09-13T19:55:51,199 copying build/lib/gff3tool/lib/gff3_ID_generator.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib 2023-09-13T19:55:51,202 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3_merge 2023-09-13T19:55:51,203 copying build/lib/gff3tool/lib/gff3_merge/auto_replace_tag.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3_merge 2023-09-13T19:55:51,206 copying build/lib/gff3tool/lib/gff3_merge/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3_merge 2023-09-13T19:55:51,207 copying build/lib/gff3tool/lib/gff3_merge/revision.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3_merge 2023-09-13T19:55:51,210 copying build/lib/gff3tool/lib/gff3_merge/merge.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3_merge 2023-09-13T19:55:51,213 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ERROR 2023-09-13T19:55:51,214 copying build/lib/gff3tool/lib/ERROR/ERROR.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ERROR 2023-09-13T19:55:51,216 copying build/lib/gff3tool/lib/ERROR/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/ERROR 2023-09-13T19:55:51,218 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/intra_model 2023-09-13T19:55:51,219 copying build/lib/gff3tool/lib/intra_model/intra_model.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/intra_model 2023-09-13T19:55:51,222 copying build/lib/gff3tool/lib/intra_model/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool/lib/intra_model 2023-09-13T19:55:51,224 copying build/lib/gff3tool/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool 2023-09-13T19:55:51,225 running install_egg_info 2023-09-13T19:55:51,252 Copying gff3tool.egg-info to build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.data/purelib/gff3tool-2.0.3-py3.11.egg-info 2023-09-13T19:55:51,262 running install_scripts 2023-09-13T19:55:51,314 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.3.dist-info/WHEEL 2023-09-13T19:55:51,316 creating '/tmp/pip-wheel-ibxqgifg/gff3tool-2.0.3-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-13T19:55:51,319 adding 'gff3tool-2.0.3.data/purelib/gff3tool/__init__.py' 2023-09-13T19:55:51,321 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib.md' 2023-09-13T19:55:51,322 adding 'gff3tool-2.0.3.data/purelib/gff3tool/bin/__init__.py' 2023-09-13T19:55:51,324 adding 'gff3tool-2.0.3.data/purelib/gff3tool/bin/gff3_QC.py' 2023-09-13T19:55:51,326 adding 'gff3tool-2.0.3.data/purelib/gff3tool/bin/gff3_fix.py' 2023-09-13T19:55:51,329 adding 'gff3tool-2.0.3.data/purelib/gff3tool/bin/gff3_merge.py' 2023-09-13T19:55:51,332 adding 'gff3tool-2.0.3.data/purelib/gff3tool/bin/gff3_sort.py' 2023-09-13T19:55:51,338 adding 'gff3tool-2.0.3.data/purelib/gff3tool/bin/gff3_to_fasta.py' 2023-09-13T19:55:51,340 adding 'gff3tool-2.0.3.data/purelib/gff3tool/bin/version.py' 2023-09-13T19:55:51,342 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/__init__.py' 2023-09-13T19:55:51,344 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3_ID_generator.py' 2023-09-13T19:55:51,346 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/id_processor.py' 2023-09-13T19:55:51,351 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/replace_OGS.py' 2023-09-13T19:55:51,352 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/utils.py' 2023-09-13T19:55:51,354 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ERROR/ERROR.py' 2023-09-13T19:55:51,355 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ERROR/__init__.py' 2023-09-13T19:55:51,358 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/auto_assignment/create_annotation_summaries_nov21-7.pl' 2023-09-13T19:55:51,360 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/auto_assignment/find_match.pl' 2023-09-13T19:55:51,361 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/auto_assignment/gen_spreadsheet.pl' 2023-09-13T19:55:51,364 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/check_gene_parent/find_wrongly_split_gene_parent.pl' 2023-09-13T19:55:51,366 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/function4gff/__init__.py' 2023-09-13T19:55:51,368 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/function4gff/function4gff.py' 2023-09-13T19:55:51,370 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3/__init__.py' 2023-09-13T19:55:51,379 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3/gff3.py' 2023-09-13T19:55:51,381 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3_fix/__init__.py' 2023-09-13T19:55:51,385 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3_fix/fix.py' 2023-09-13T19:55:51,387 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3_merge/__init__.py' 2023-09-13T19:55:51,389 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3_merge/auto_replace_tag.py' 2023-09-13T19:55:51,391 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3_merge/merge.py' 2023-09-13T19:55:51,393 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/gff3_merge/revision.py' 2023-09-13T19:55:51,395 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/inter_model/__init__.py' 2023-09-13T19:55:51,397 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/inter_model/inter_model.py' 2023-09-13T19:55:51,398 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/intra_model/__init__.py' 2023-09-13T19:55:51,400 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/intra_model/intra_model.py' 2023-09-13T19:55:56,348 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/blast_formatter' 2023-09-13T19:55:59,664 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastdb_aliastool' 2023-09-13T19:56:03,567 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastdbcheck' 2023-09-13T19:56:08,127 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastdbcmd' 2023-09-13T19:56:13,637 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastn' 2023-09-13T19:56:18,817 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastp' 2023-09-13T19:56:24,856 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastx' 2023-09-13T19:56:28,640 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/convert2blastmask' 2023-09-13T19:56:33,819 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/deltablast' 2023-09-13T19:56:37,363 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/dustmasker' 2023-09-13T19:56:37,537 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/legacy_blast.pl' 2023-09-13T19:56:41,328 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/makeblastdb' 2023-09-13T19:56:44,889 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/makembindex' 2023-09-13T19:56:48,431 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/makeprofiledb' 2023-09-13T19:56:53,976 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/psiblast' 2023-09-13T19:56:59,532 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/rpsblast' 2023-09-13T19:57:04,729 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/rpstblastn' 2023-09-13T19:57:08,544 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/segmasker' 2023-09-13T19:57:13,667 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/tblastn' 2023-09-13T19:57:19,255 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/tblastx' 2023-09-13T19:57:19,517 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/update_blastdb.pl' 2023-09-13T19:57:23,647 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/ncbi-blast+/bin/windowmasker' 2023-09-13T19:57:23,855 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/single_feature/__init__.py' 2023-09-13T19:57:23,857 adding 'gff3tool-2.0.3.data/purelib/gff3tool/lib/single_feature/single_feature.py' 2023-09-13T19:57:23,860 adding 'gff3tool-2.0.3.dist-info/METADATA' 2023-09-13T19:57:23,861 adding 'gff3tool-2.0.3.dist-info/WHEEL' 2023-09-13T19:57:23,862 adding 'gff3tool-2.0.3.dist-info/entry_points.txt' 2023-09-13T19:57:23,863 adding 'gff3tool-2.0.3.dist-info/top_level.txt' 2023-09-13T19:57:23,865 adding 'gff3tool-2.0.3.dist-info/RECORD' 2023-09-13T19:57:24,040 removing build/bdist.linux-armv7l/wheel 2023-09-13T19:57:24,387 Building wheel for gff3tool (setup.py): finished with status 'done' 2023-09-13T19:57:28,372 Created wheel for gff3tool: filename=gff3tool-2.0.3-cp311-cp311-linux_armv7l.whl size=177059918 sha256=95e1e75ca03aacb334f33561f347c21a95265b3d091aad9a31329060ff7c1931 2023-09-13T19:57:28,373 Stored in directory: /tmp/pip-ephem-wheel-cache-r45iugxz/wheels/2c/10/01/589477cd65b7388375edc41ea2d8abc9c04ffeff62fb17d9f4 2023-09-13T19:57:28,438 Successfully built gff3tool 2023-09-13T19:57:32,365 Removed build tracker: '/tmp/pip-build-tracker-j9kqvdai'