2023-09-13T22:48:46,451 Created temporary directory: /tmp/pip-build-tracker-tqlqho9q 2023-09-13T22:48:46,452 Initialized build tracking at /tmp/pip-build-tracker-tqlqho9q 2023-09-13T22:48:46,453 Created build tracker: /tmp/pip-build-tracker-tqlqho9q 2023-09-13T22:48:46,454 Entered build tracker: /tmp/pip-build-tracker-tqlqho9q 2023-09-13T22:48:46,455 Created temporary directory: /tmp/pip-wheel-yydn7l2u 2023-09-13T22:48:46,458 Created temporary directory: /tmp/pip-ephem-wheel-cache-jdp8u2gi 2023-09-13T22:48:46,485 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-13T22:48:46,490 2 location(s) to search for versions of megalodon: 2023-09-13T22:48:46,490 * https://pypi.org/simple/megalodon/ 2023-09-13T22:48:46,490 * https://www.piwheels.org/simple/megalodon/ 2023-09-13T22:48:46,491 Fetching project page and analyzing links: https://pypi.org/simple/megalodon/ 2023-09-13T22:48:46,492 Getting page https://pypi.org/simple/megalodon/ 2023-09-13T22:48:46,494 Found index url https://pypi.org/simple/ 2023-09-13T22:48:46,735 Fetched page https://pypi.org/simple/megalodon/ as application/vnd.pypi.simple.v1+json 2023-09-13T22:48:46,745 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/fe/5f/fc169f4470c2ab9a3d0dcf7b0eba0752a950494eb6587cbe3425724bcbaa/megalodon-1.0.0-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/megalodon/) 2023-09-13T22:48:46,746 Found link https://files.pythonhosted.org/packages/9b/94/e9a546cb3958043d7378b0d1b5eebe01ca3923db3de08a10ef230e27dff5/megalodon-1.0.0.tar.gz (from https://pypi.org/simple/megalodon/), version: 1.0.0 2023-09-13T22:48:46,746 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/15/da/db7e0d83c7237552d45289530e9418d460c7a994f0d2b6a1735f98f62ecf/megalodon-2.0.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/megalodon/) 2023-09-13T22:48:46,747 Found link https://files.pythonhosted.org/packages/1d/e0/6a40deaac257dacfb2c31c056b37abd76e8ddfc8e852ea5117cb3d67b220/megalodon-2.0.0.tar.gz (from https://pypi.org/simple/megalodon/), version: 2.0.0 2023-09-13T22:48:46,748 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/33/7c/bfd056d9b7d5a618f61d28fe44d2402a16b6a959f9a30cd13f8dc7046e4c/megalodon-2.1.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/megalodon/) 2023-09-13T22:48:46,749 Found link https://files.pythonhosted.org/packages/aa/cc/b3c81dc70660c4e043180ea7535b8b42dd8724cddd784dbeb039ff2bf0c5/megalodon-2.1.0.tar.gz (from https://pypi.org/simple/megalodon/), version: 2.1.0 2023-09-13T22:48:46,750 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/82/eb/8a50a84306188acf8c4dc1855184d652e6497a11343769b2d6b474a96d66/megalodon-2.2.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/megalodon/) 2023-09-13T22:48:46,750 Found link https://files.pythonhosted.org/packages/74/a9/32eb1037cb5e427a433a648e02fd0e3e137d8803320858190e7b2fec74a7/megalodon-2.2.0.tar.gz (from https://pypi.org/simple/megalodon/), version: 2.2.0 2023-09-13T22:48:46,751 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/82/27/2831a1d28162814e76b2e8a11fce724981e8859d1bc01f6466c242c4aca8/megalodon-2.2.1-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/megalodon/) 2023-09-13T22:48:46,752 Found link https://files.pythonhosted.org/packages/af/83/f12260694514be27333adb79165bc3958b59909eb21495b918a98e0e6f07/megalodon-2.2.1.tar.gz (from https://pypi.org/simple/megalodon/), version: 2.2.1 2023-09-13T22:48:46,753 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/23/94/863df7fd77e1944284db39b53c3cc1f70e0f8fcbf6986d2a88e6f4d580e8/megalodon-2.2.2-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/megalodon/) 2023-09-13T22:48:46,754 Found link https://files.pythonhosted.org/packages/9e/46/69945645195a2fb592946734e200065f4789a25d58083d8c3abf9892a81f/megalodon-2.2.2.tar.gz (from https://pypi.org/simple/megalodon/), version: 2.2.2 2023-09-13T22:48:46,755 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/45/a6/2823df05db649df59c68dd45cf096fbfbfc329ef1d0f7ebec4f8d9f22aba/megalodon-2.2.3-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/megalodon/) 2023-09-13T22:48:46,756 Found link https://files.pythonhosted.org/packages/4e/ef/da0e43132c1e0eb419591aa7827c4283599e58693d0b62234154b82596ae/megalodon-2.2.3.tar.gz (from https://pypi.org/simple/megalodon/), version: 2.2.3 2023-09-13T22:48:46,756 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/68/ae/04258dc7767930aa202d1bde4b85ab85d7198e309aeac9dd87022622feb2/megalodon-2.2.4-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/megalodon/) 2023-09-13T22:48:46,757 Found link https://files.pythonhosted.org/packages/f2/1a/4cbec97bcedb05c100398b752bccc14078a7bb7d72e4c3dd9adf96280818/megalodon-2.2.4.tar.gz (from https://pypi.org/simple/megalodon/), version: 2.2.4 2023-09-13T22:48:46,758 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/19/dd/f9468b176d7205983acd0815d8e5c8c261befeac8ada2b56b1ecb993bb68/megalodon-2.2.5-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/megalodon/) 2023-09-13T22:48:46,758 Found link https://files.pythonhosted.org/packages/16/ae/a874438ab41e90ab0cef6dd27dacfdafde85d1e53919d16a6cf7179db5a0/megalodon-2.2.5.tar.gz (from https://pypi.org/simple/megalodon/), version: 2.2.5 2023-09-13T22:48:46,759 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/a5/62/9b0b3ea25b343f382552662ebfe57635b614f8a2377ffd5023c211936cc1/megalodon-2.2.6-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/megalodon/) 2023-09-13T22:48:46,760 Found link https://files.pythonhosted.org/packages/e5/b2/d811ca419757cbba76ddc27bfa2d6737697ff84154452b854ed45bff00cd/megalodon-2.2.6.tar.gz (from https://pypi.org/simple/megalodon/), version: 2.2.6 2023-09-13T22:48:46,760 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/c9/b4/f5d093c9af006cf796dabdbc11c1e35d948f0614ded7d2287c59edf176f5/megalodon-2.2.7-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/megalodon/) 2023-09-13T22:48:46,761 Found link https://files.pythonhosted.org/packages/8f/3a/0dddaefaafd13b422c47b29b6eb8244e063cf1913a6c93bb266f81ba28b0/megalodon-2.2.7.tar.gz (from https://pypi.org/simple/megalodon/), version: 2.2.7 2023-09-13T22:48:46,762 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/1c/e2/aac960ece82b3ee2d1bf508bbad89b0322df7ee93867bff61eb08eea7d02/megalodon-2.2.8-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/megalodon/) 2023-09-13T22:48:46,763 Found link https://files.pythonhosted.org/packages/96/ff/fbca07072116bded97faa95b3e612e51699f0f2b0f6bf3f8ceb4d517eb13/megalodon-2.2.8.tar.gz (from https://pypi.org/simple/megalodon/), version: 2.2.8 2023-09-13T22:48:46,764 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/54/36/c04e7bca80b2e6c219622a5ac59624929bdf393917c6b22afb0b20cab5a2/megalodon-2.2.9-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/megalodon/) 2023-09-13T22:48:46,765 Found link https://files.pythonhosted.org/packages/32/34/06e3789e13ba3a53aee81ad3c8cb68b1e9356530af8525ca0f68869d02eb/megalodon-2.2.9.tar.gz (from https://pypi.org/simple/megalodon/), version: 2.2.9 2023-09-13T22:48:46,765 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/85/e8/e90f759e0e17e18731d7c22fbf238b09662d54629b9736ff92f98975a6a1/megalodon-2.2.10-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/megalodon/) 2023-09-13T22:48:46,766 Found link https://files.pythonhosted.org/packages/c4/f8/97ed0590b57f2105b63c9141901cc9488fd94d4d0550cf316d9737092701/megalodon-2.2.10.tar.gz (from https://pypi.org/simple/megalodon/), version: 2.2.10 2023-09-13T22:48:46,767 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/af/89/c690ee45ac097048cc7738902b9d633c469948e15d2091f203e504183c69/megalodon-2.3.0-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/megalodon/) 2023-09-13T22:48:46,768 Found link https://files.pythonhosted.org/packages/a3/ac/c085b61208e30364a2d5aa52bdb9fe26b2e71331384ea510043df6c93db2/megalodon-2.3.0.tar.gz (from https://pypi.org/simple/megalodon/), version: 2.3.0 2023-09-13T22:48:46,769 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/89/ca/b8b717f61b34ea09ed4a19b0ba7c088f44efbd84c3e6d4ee04797e98022b/megalodon-2.3.1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/megalodon/) 2023-09-13T22:48:46,770 Found link https://files.pythonhosted.org/packages/a2/b9/4730d767af8173b026270f434ac0faac38cc527e85218736e83b39ff9b3a/megalodon-2.3.1.tar.gz (from https://pypi.org/simple/megalodon/), version: 2.3.1 2023-09-13T22:48:46,770 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/6e/a9/dade983077875bca37f2558709482ec2638f0e236bf450d1355a852506e6/megalodon-2.3.2-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/megalodon/) 2023-09-13T22:48:46,771 Found link https://files.pythonhosted.org/packages/35/ae/d788181d8ad6d23022ad17ef333ba0ae1f29c91aed2fe4988806d9e58cab/megalodon-2.3.2.tar.gz (from https://pypi.org/simple/megalodon/), version: 2.3.2 2023-09-13T22:48:46,772 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/cf/b2/456dd3c337f80c9f55d276df727f4c95ec13de7f7ef2b72a69f6889c033d/megalodon-2.3.3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/megalodon/) 2023-09-13T22:48:46,772 Found link https://files.pythonhosted.org/packages/2f/c2/3466feebb701a2aa549833f13a1d4061d87ebaddaec55c2be9bb09ccf2f1/megalodon-2.3.3.tar.gz (from https://pypi.org/simple/megalodon/), version: 2.3.3 2023-09-13T22:48:46,773 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/85/31/eda4a2777fd88cd41f1492bc0972f887bebfa40d1cd8e38a881b14187830/megalodon-2.3.4-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/megalodon/) (requires-python:>=3.6) 2023-09-13T22:48:46,774 Found link https://files.pythonhosted.org/packages/eb/ff/dbaac26e1b426af272ff2e5938c7d56754160450530b39f6b7cda83a8b29/megalodon-2.3.4.tar.gz (from https://pypi.org/simple/megalodon/) (requires-python:>=3.6), version: 2.3.4 2023-09-13T22:48:46,775 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/38/20/1bb57402b880c16149079fbeac3b43c80498d5acc2862295306e7c964676/megalodon-2.3.5-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/megalodon/) (requires-python:>=3.6) 2023-09-13T22:48:46,776 Found link https://files.pythonhosted.org/packages/a4/b3/ff840460f90dd4bc113448e8634a7511f930893b84d32d5863f54534779f/megalodon-2.3.5.tar.gz (from https://pypi.org/simple/megalodon/) (requires-python:>=3.6), version: 2.3.5 2023-09-13T22:48:46,777 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/47/00/91db7cbbe387898be68b912f18a3b91e7c12eee61f13483b150ca9924173/megalodon-2.4.0-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/megalodon/) (requires-python:>=3.6) 2023-09-13T22:48:46,778 Found link https://files.pythonhosted.org/packages/77/c2/5d08135f7a2d41985d4b9254f9bc7aa1c1df69bb4c82a08a389b74a8e754/megalodon-2.4.0.tar.gz (from https://pypi.org/simple/megalodon/) (requires-python:>=3.6), version: 2.4.0 2023-09-13T22:48:46,779 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/1b/1e/dd1133c626ca4ca140974770d00b4b2c0b129c3c78b64e96337f6e5d815a/megalodon-2.4.1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/megalodon/) (requires-python:>=3.6) 2023-09-13T22:48:46,780 Found link https://files.pythonhosted.org/packages/2f/34/6afc0aaba624849e304376aa147febf703443b0a6797c5c13884da5c637a/megalodon-2.4.1.tar.gz (from https://pypi.org/simple/megalodon/) (requires-python:>=3.6), version: 2.4.1 2023-09-13T22:48:46,781 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/4b/1e/6b21ec5d6f616634c8ee24c35c670cbee1d58df92db7640172c764dec9c7/megalodon-2.4.2-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/megalodon/) (requires-python:>=3.6) 2023-09-13T22:48:46,782 Found link https://files.pythonhosted.org/packages/03/46/966ca271702c6ca7d2ed03131f75a67c8ab687210e290768a693ccaf6d73/megalodon-2.4.2.tar.gz (from https://pypi.org/simple/megalodon/) (requires-python:>=3.6), version: 2.4.2 2023-09-13T22:48:46,783 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/6f/7c/e2838831951df05b80930490da9a16dbab95945973749b48639a2f222e71/megalodon-2.5.0-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/megalodon/) (requires-python:>=3.6) 2023-09-13T22:48:46,784 Found link https://files.pythonhosted.org/packages/81/b4/ca5bacd89b7478612da30557c2839cc2ff96ae3bf41218987fafc3256775/megalodon-2.5.0.tar.gz (from https://pypi.org/simple/megalodon/) (requires-python:>=3.6), version: 2.5.0 2023-09-13T22:48:46,785 Fetching project page and analyzing links: https://www.piwheels.org/simple/megalodon/ 2023-09-13T22:48:46,786 Getting page https://www.piwheels.org/simple/megalodon/ 2023-09-13T22:48:46,787 Found index url https://www.piwheels.org/simple/ 2023-09-13T22:48:47,066 Fetched page https://www.piwheels.org/simple/megalodon/ as text/html 2023-09-13T22:48:47,101 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-2.5.0-cp39-cp39-linux_armv7l.whl#sha256=1480ad3cec21d7f8cca8b1a7ca3449f2cfd8d429fbcf870d022f729acafe722e (from https://www.piwheels.org/simple/megalodon/) (requires-python:>=3.6) 2023-09-13T22:48:47,102 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-2.5.0-cp39-cp39-linux_armv6l.whl#sha256=1480ad3cec21d7f8cca8b1a7ca3449f2cfd8d429fbcf870d022f729acafe722e (from https://www.piwheels.org/simple/megalodon/) (requires-python:>=3.6) 2023-09-13T22:48:47,103 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-2.5.0-cp37-cp37m-linux_armv7l.whl#sha256=bc744d0c905f25d787b97c81ee35de59505982843b28f59b9112bb1a8a3e4cb9 (from https://www.piwheels.org/simple/megalodon/) (requires-python:>=3.6) 2023-09-13T22:48:47,104 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-2.5.0-cp37-cp37m-linux_armv6l.whl#sha256=bc744d0c905f25d787b97c81ee35de59505982843b28f59b9112bb1a8a3e4cb9 (from https://www.piwheels.org/simple/megalodon/) (requires-python:>=3.6) 2023-09-13T22:48:47,104 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-2.4.2-cp39-cp39-linux_armv7l.whl#sha256=e8d37cf5db930194a6e8b1d67de2116f376f3f4a6233cd9ced80a95bbbf485b4 (from https://www.piwheels.org/simple/megalodon/) (requires-python:>=3.6) 2023-09-13T22:48:47,105 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-2.4.2-cp39-cp39-linux_armv6l.whl#sha256=e8d37cf5db930194a6e8b1d67de2116f376f3f4a6233cd9ced80a95bbbf485b4 (from https://www.piwheels.org/simple/megalodon/) (requires-python:>=3.6) 2023-09-13T22:48:47,106 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-2.4.2-cp37-cp37m-linux_armv7l.whl#sha256=10f3ab2d955b0a0e1b0afa23d5128b891c452b7fa48a0d0293abd65ddf23b24b (from https://www.piwheels.org/simple/megalodon/) (requires-python:>=3.6) 2023-09-13T22:48:47,107 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-2.4.2-cp37-cp37m-linux_armv6l.whl#sha256=10f3ab2d955b0a0e1b0afa23d5128b891c452b7fa48a0d0293abd65ddf23b24b (from https://www.piwheels.org/simple/megalodon/) (requires-python:>=3.6) 2023-09-13T22:48:47,107 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-2.4.1-cp39-cp39-linux_armv7l.whl#sha256=fa9c7e94b42dad7b8e761311d3b3ec5abb8317f62b962ed24f7e4268fcd316a4 (from https://www.piwheels.org/simple/megalodon/) (requires-python:>=3.6) 2023-09-13T22:48:47,108 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-2.4.1-cp39-cp39-linux_armv6l.whl#sha256=fa9c7e94b42dad7b8e761311d3b3ec5abb8317f62b962ed24f7e4268fcd316a4 (from https://www.piwheels.org/simple/megalodon/) (requires-python:>=3.6) 2023-09-13T22:48:47,109 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-2.4.1-cp37-cp37m-linux_armv7l.whl#sha256=edd378f768edebd5e0b229a2c0df61d76eb399b0b38c79b3073a6a0708224881 (from https://www.piwheels.org/simple/megalodon/) (requires-python:>=3.6) 2023-09-13T22:48:47,110 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-2.4.1-cp37-cp37m-linux_armv6l.whl#sha256=edd378f768edebd5e0b229a2c0df61d76eb399b0b38c79b3073a6a0708224881 (from https://www.piwheels.org/simple/megalodon/) (requires-python:>=3.6) 2023-09-13T22:48:47,110 Skipping link: No binaries permitted for megalodon: 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https://www.piwheels.org/simple/megalodon/megalodon-2.1.0-cp37-cp37m-linux_armv6l.whl#sha256=ff7ed8ac5b1eeeda00e3e84f4c97937efb5d9a3aba4716019c4ce44dbce7b298 (from https://www.piwheels.org/simple/megalodon/) 2023-09-13T22:48:47,196 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=e2eac67261b57f14671cc3a02e115cdefa06fe017bb76790738d971b3140d050 (from https://www.piwheels.org/simple/megalodon/) 2023-09-13T22:48:47,196 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=e2eac67261b57f14671cc3a02e115cdefa06fe017bb76790738d971b3140d050 (from https://www.piwheels.org/simple/megalodon/) 2023-09-13T22:48:47,197 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-2.0.0-cp35-cp35m-linux_armv7l.whl#sha256=6db4d8cc86003524c8f8de840b945e48f73bb4bbebbf98458727099a7e73bc5b (from https://www.piwheels.org/simple/megalodon/) 2023-09-13T22:48:47,198 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-2.0.0-cp35-cp35m-linux_armv6l.whl#sha256=6db4d8cc86003524c8f8de840b945e48f73bb4bbebbf98458727099a7e73bc5b (from https://www.piwheels.org/simple/megalodon/) 2023-09-13T22:48:47,198 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=0e4debc0b30c952e1826735c87f4088bc457611e16ef4e311a7c8deeedd006d9 (from https://www.piwheels.org/simple/megalodon/) 2023-09-13T22:48:47,199 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=0e4debc0b30c952e1826735c87f4088bc457611e16ef4e311a7c8deeedd006d9 (from https://www.piwheels.org/simple/megalodon/) 2023-09-13T22:48:47,200 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=3b8a5c1309bfac12953ab449713cad7ae171a6d2821683bafdf5ea52cb143438 (from https://www.piwheels.org/simple/megalodon/) 2023-09-13T22:48:47,200 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=3b8a5c1309bfac12953ab449713cad7ae171a6d2821683bafdf5ea52cb143438 (from https://www.piwheels.org/simple/megalodon/) 2023-09-13T22:48:47,201 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-1.0.0-cp35-cp35m-linux_armv7l.whl#sha256=b253b4870b5f5f69452fee11d59aca438220ed07ac6f592c3b59b0611de87acc (from https://www.piwheels.org/simple/megalodon/) 2023-09-13T22:48:47,202 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-1.0.0-cp35-cp35m-linux_armv6l.whl#sha256=b253b4870b5f5f69452fee11d59aca438220ed07ac6f592c3b59b0611de87acc (from https://www.piwheels.org/simple/megalodon/) 2023-09-13T22:48:47,202 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=901f078d6b564ebbaa89c7beff23b1afbaf455a51872f8b31f35c98d9d343579 (from https://www.piwheels.org/simple/megalodon/) 2023-09-13T22:48:47,203 Skipping link: No binaries permitted for megalodon: https://www.piwheels.org/simple/megalodon/megalodon-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=901f078d6b564ebbaa89c7beff23b1afbaf455a51872f8b31f35c98d9d343579 (from https://www.piwheels.org/simple/megalodon/) 2023-09-13T22:48:47,204 Skipping link: not a file: https://www.piwheels.org/simple/megalodon/ 2023-09-13T22:48:47,205 Skipping link: not a file: https://pypi.org/simple/megalodon/ 2023-09-13T22:48:47,228 Given no hashes to check 1 links for project 'megalodon': discarding no candidates 2023-09-13T22:48:47,247 Collecting megalodon==2.3.2 2023-09-13T22:48:47,250 Created temporary directory: /tmp/pip-unpack-sc2aggop 2023-09-13T22:48:48,015 Downloading megalodon-2.3.2.tar.gz (6.4 MB) 2023-09-13T22:48:51,422 Added megalodon==2.3.2 from https://files.pythonhosted.org/packages/35/ae/d788181d8ad6d23022ad17ef333ba0ae1f29c91aed2fe4988806d9e58cab/megalodon-2.3.2.tar.gz to build tracker '/tmp/pip-build-tracker-tqlqho9q' 2023-09-13T22:48:51,426 Created temporary directory: /tmp/pip-build-env-g83iww05 2023-09-13T22:48:51,431 Installing build dependencies: started 2023-09-13T22:48:51,432 Running command pip subprocess to install build dependencies 2023-09-13T22:48:53,133 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-13T22:48:53,697 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-13T22:48:55,511 Collecting setuptools>=40.8.0 2023-09-13T22:48:55,512 Obtaining dependency information for setuptools>=40.8.0 from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-13T22:48:55,518 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-13T22:48:55,738 Collecting wheel 2023-09-13T22:48:55,756 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-13T22:48:55,952 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-13T22:48:58,708 Installing collected packages: wheel, setuptools 2023-09-13T22:48:58,957 Creating /tmp/pip-build-env-g83iww05/overlay/local/bin 2023-09-13T22:48:58,960 changing mode of /tmp/pip-build-env-g83iww05/overlay/local/bin/wheel to 755 2023-09-13T22:49:01,592 Successfully installed setuptools-68.2.2 wheel-0.41.2 2023-09-13T22:49:02,176 Installing build dependencies: finished with status 'done' 2023-09-13T22:49:02,179 Getting requirements to build wheel: started 2023-09-13T22:49:02,180 Running command Getting requirements to build wheel 2023-09-13T22:49:02,690 /tmp/pip-build-env-g83iww05/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-13T22:49:02,690 !! 2023-09-13T22:49:02,691 ******************************************************************************** 2023-09-13T22:49:02,692 Usage of dash-separated 'long-description' will not be supported in future 2023-09-13T22:49:02,693 versions. Please use the underscore name 'long_description' instead. 2023-09-13T22:49:02,694 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-13T22:49:02,695 or your builds will no longer be supported. 2023-09-13T22:49:02,696 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-13T22:49:02,696 ******************************************************************************** 2023-09-13T22:49:02,698 !! 2023-09-13T22:49:02,698 opt = self.warn_dash_deprecation(opt, section) 2023-09-13T22:49:02,699 /tmp/pip-build-env-g83iww05/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-13T22:49:02,700 !! 2023-09-13T22:49:02,701 ******************************************************************************** 2023-09-13T22:49:02,702 Usage of dash-separated 'long-description-content-type' will not be supported in future 2023-09-13T22:49:02,702 versions. Please use the underscore name 'long_description_content_type' instead. 2023-09-13T22:49:02,704 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-13T22:49:02,705 or your builds will no longer be supported. 2023-09-13T22:49:02,706 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-13T22:49:02,707 ******************************************************************************** 2023-09-13T22:49:02,708 !! 2023-09-13T22:49:02,708 opt = self.warn_dash_deprecation(opt, section) 2023-09-13T22:49:02,846 Getting requirements to build wheel: finished with status 'done' 2023-09-13T22:49:02,872 Installing backend dependencies: started 2023-09-13T22:49:02,873 Running command pip subprocess to install backend dependencies 2023-09-13T22:49:04,145 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-13T22:49:04,683 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-13T22:49:06,549 Collecting cython 2023-09-13T22:49:06,550 Obtaining dependency information for cython from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata 2023-09-13T22:49:06,556 Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-13T22:49:06,592 Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB) 2023-09-13T22:49:09,201 Installing collected packages: cython 2023-09-13T22:49:12,600 Creating /tmp/pip-build-env-g83iww05/normal/local/bin 2023-09-13T22:49:12,603 changing mode of /tmp/pip-build-env-g83iww05/normal/local/bin/cygdb to 755 2023-09-13T22:49:12,605 changing mode of /tmp/pip-build-env-g83iww05/normal/local/bin/cython to 755 2023-09-13T22:49:12,608 changing mode of /tmp/pip-build-env-g83iww05/normal/local/bin/cythonize to 755 2023-09-13T22:49:12,626 Successfully installed cython-3.0.2 2023-09-13T22:49:13,231 Installing backend dependencies: finished with status 'done' 2023-09-13T22:49:13,233 Created temporary directory: /tmp/pip-modern-metadata-_4gqf4cf 2023-09-13T22:49:13,236 Preparing metadata (pyproject.toml): started 2023-09-13T22:49:13,237 Running command Preparing metadata (pyproject.toml) 2023-09-13T22:49:13,738 /tmp/pip-build-env-g83iww05/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'use_pyscaffold' 2023-09-13T22:49:13,738 warnings.warn(msg) 2023-09-13T22:49:13,767 /tmp/pip-build-env-g83iww05/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-13T22:49:13,768 !! 2023-09-13T22:49:13,769 ******************************************************************************** 2023-09-13T22:49:13,770 Usage of dash-separated 'long-description' will not be supported in future 2023-09-13T22:49:13,770 versions. Please use the underscore name 'long_description' instead. 2023-09-13T22:49:13,772 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-13T22:49:13,773 or your builds will no longer be supported. 2023-09-13T22:49:13,774 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-13T22:49:13,775 ******************************************************************************** 2023-09-13T22:49:13,776 !! 2023-09-13T22:49:13,777 opt = self.warn_dash_deprecation(opt, section) 2023-09-13T22:49:13,777 /tmp/pip-build-env-g83iww05/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-13T22:49:13,778 !! 2023-09-13T22:49:13,779 ******************************************************************************** 2023-09-13T22:49:13,780 Usage of dash-separated 'long-description-content-type' will not be supported in future 2023-09-13T22:49:13,781 versions. Please use the underscore name 'long_description_content_type' instead. 2023-09-13T22:49:13,783 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-13T22:49:13,783 or your builds will no longer be supported. 2023-09-13T22:49:13,784 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-13T22:49:13,785 ******************************************************************************** 2023-09-13T22:49:13,786 !! 2023-09-13T22:49:13,786 opt = self.warn_dash_deprecation(opt, section) 2023-09-13T22:49:13,896 running dist_info 2023-09-13T22:49:13,919 creating /tmp/pip-modern-metadata-_4gqf4cf/megalodon.egg-info 2023-09-13T22:49:13,925 writing /tmp/pip-modern-metadata-_4gqf4cf/megalodon.egg-info/PKG-INFO 2023-09-13T22:49:13,932 writing dependency_links to /tmp/pip-modern-metadata-_4gqf4cf/megalodon.egg-info/dependency_links.txt 2023-09-13T22:49:13,934 writing entry points to /tmp/pip-modern-metadata-_4gqf4cf/megalodon.egg-info/entry_points.txt 2023-09-13T22:49:13,937 writing requirements to /tmp/pip-modern-metadata-_4gqf4cf/megalodon.egg-info/requires.txt 2023-09-13T22:49:13,938 writing top-level names to /tmp/pip-modern-metadata-_4gqf4cf/megalodon.egg-info/top_level.txt 2023-09-13T22:49:13,940 writing manifest file '/tmp/pip-modern-metadata-_4gqf4cf/megalodon.egg-info/SOURCES.txt' 2023-09-13T22:49:14,168 reading manifest file '/tmp/pip-modern-metadata-_4gqf4cf/megalodon.egg-info/SOURCES.txt' 2023-09-13T22:49:14,171 reading manifest template 'MANIFEST.in' 2023-09-13T22:49:14,177 adding license file 'LICENCE.txt' 2023-09-13T22:49:14,183 writing manifest file '/tmp/pip-modern-metadata-_4gqf4cf/megalodon.egg-info/SOURCES.txt' 2023-09-13T22:49:14,185 creating '/tmp/pip-modern-metadata-_4gqf4cf/megalodon-2.3.2.dist-info' 2023-09-13T22:49:14,390 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-13T22:49:14,395 Source in /tmp/pip-wheel-yydn7l2u/megalodon_d9b7707ec7024c87a0e9ca001f7e3318 has version 2.3.2, which satisfies requirement megalodon==2.3.2 from https://files.pythonhosted.org/packages/35/ae/d788181d8ad6d23022ad17ef333ba0ae1f29c91aed2fe4988806d9e58cab/megalodon-2.3.2.tar.gz 2023-09-13T22:49:14,396 Removed megalodon==2.3.2 from https://files.pythonhosted.org/packages/35/ae/d788181d8ad6d23022ad17ef333ba0ae1f29c91aed2fe4988806d9e58cab/megalodon-2.3.2.tar.gz from build tracker '/tmp/pip-build-tracker-tqlqho9q' 2023-09-13T22:49:14,402 Created temporary directory: /tmp/pip-unpack-c6xos7q_ 2023-09-13T22:49:14,403 Created temporary directory: /tmp/pip-unpack-fa9mvj11 2023-09-13T22:49:14,438 Building wheels for collected packages: megalodon 2023-09-13T22:49:14,444 Created temporary directory: /tmp/pip-wheel-azgdvh2b 2023-09-13T22:49:14,444 Destination directory: /tmp/pip-wheel-azgdvh2b 2023-09-13T22:49:14,447 Building wheel for megalodon (pyproject.toml): started 2023-09-13T22:49:14,448 Running command Building wheel for megalodon (pyproject.toml) 2023-09-13T22:49:14,917 /tmp/pip-build-env-g83iww05/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'use_pyscaffold' 2023-09-13T22:49:14,917 warnings.warn(msg) 2023-09-13T22:49:14,945 /tmp/pip-build-env-g83iww05/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-13T22:49:14,946 !! 2023-09-13T22:49:14,947 ******************************************************************************** 2023-09-13T22:49:14,948 Usage of dash-separated 'long-description' will not be supported in future 2023-09-13T22:49:14,949 versions. Please use the underscore name 'long_description' instead. 2023-09-13T22:49:14,950 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-13T22:49:14,951 or your builds will no longer be supported. 2023-09-13T22:49:14,952 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-13T22:49:14,953 ******************************************************************************** 2023-09-13T22:49:14,955 !! 2023-09-13T22:49:14,955 opt = self.warn_dash_deprecation(opt, section) 2023-09-13T22:49:14,956 /tmp/pip-build-env-g83iww05/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-13T22:49:14,956 !! 2023-09-13T22:49:14,957 ******************************************************************************** 2023-09-13T22:49:14,958 Usage of dash-separated 'long-description-content-type' will not be supported in future 2023-09-13T22:49:14,958 versions. Please use the underscore name 'long_description_content_type' instead. 2023-09-13T22:49:14,959 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-13T22:49:14,960 or your builds will no longer be supported. 2023-09-13T22:49:14,961 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-13T22:49:14,962 ******************************************************************************** 2023-09-13T22:49:14,963 !! 2023-09-13T22:49:14,964 opt = self.warn_dash_deprecation(opt, section) 2023-09-13T22:49:15,107 running bdist_wheel 2023-09-13T22:49:15,307 running build 2023-09-13T22:49:15,308 running build_py 2023-09-13T22:49:15,316 creating build 2023-09-13T22:49:15,317 creating build/lib.linux-armv7l-cpython-311 2023-09-13T22:49:15,318 creating build/lib.linux-armv7l-cpython-311/megalodon 2023-09-13T22:49:15,319 copying ./megalodon/megalodon_multiprocessing.py -> build/lib.linux-armv7l-cpython-311/megalodon 2023-09-13T22:49:15,322 copying ./megalodon/backends.py -> build/lib.linux-armv7l-cpython-311/megalodon 2023-09-13T22:49:15,325 copying ./megalodon/aggregate.py -> build/lib.linux-armv7l-cpython-311/megalodon 2023-09-13T22:49:15,328 copying ./megalodon/validation.py -> build/lib.linux-armv7l-cpython-311/megalodon 2023-09-13T22:49:15,330 copying ./megalodon/megalodon.py -> build/lib.linux-armv7l-cpython-311/megalodon 2023-09-13T22:49:15,334 copying ./megalodon/mapping.py -> build/lib.linux-armv7l-cpython-311/megalodon 2023-09-13T22:49:15,336 copying ./megalodon/mods.py -> build/lib.linux-armv7l-cpython-311/megalodon 2023-09-13T22:49:15,340 copying ./megalodon/calibration.py -> build/lib.linux-armv7l-cpython-311/megalodon 2023-09-13T22:49:15,343 copying ./megalodon/signal_mapping.py -> build/lib.linux-armv7l-cpython-311/megalodon 2023-09-13T22:49:15,345 copying ./megalodon/fast5_io.py -> build/lib.linux-armv7l-cpython-311/megalodon 2023-09-13T22:49:15,348 copying ./megalodon/__main__.py -> build/lib.linux-armv7l-cpython-311/megalodon 2023-09-13T22:49:15,350 copying ./megalodon/__init__.py -> build/lib.linux-armv7l-cpython-311/megalodon 2023-09-13T22:49:15,352 copying ./megalodon/megalodon_helper.py -> build/lib.linux-armv7l-cpython-311/megalodon 2023-09-13T22:49:15,356 copying ./megalodon/variants.py -> build/lib.linux-armv7l-cpython-311/megalodon 2023-09-13T22:49:15,360 copying ./megalodon/logging.py -> build/lib.linux-armv7l-cpython-311/megalodon 2023-09-13T22:49:15,363 creating build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,364 copying ./megalodon_extras/variants_atomize.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,366 copying ./megalodon_extras/modified_bases_create_motif_bed.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,368 copying ./megalodon_extras/calibrate_generate_modified_base_stats.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,371 copying ./megalodon_extras/calibrate_generate_variant_stats.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,374 copying ./megalodon_extras/validate_results.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,376 copying ./megalodon_extras/_extras_parsers.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,380 copying ./megalodon_extras/modified_bases_create_ground_truth.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,382 copying ./megalodon_extras/phase_variants_extract_haplotype_reads.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,383 copying ./megalodon_extras/modified_bases_per_site_thresholds.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,386 copying ./megalodon_extras/validate_mod_bases_from_calibration.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,388 copying ./megalodon_extras/variants_heterozygous_factor.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,390 copying ./megalodon_extras/merge_aggregated_modified_bases.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,392 copying ./megalodon_extras/calibrate_merge_modified_bases.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,394 copying ./megalodon_extras/phase_variants_merge_haploid_variants.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,396 copying ./megalodon_extras/calibrate_variants.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,398 copying ./megalodon_extras/validate_aggregated_modified_bases.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,401 copying ./megalodon_extras/per_read_text_variants.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,403 copying ./megalodon_extras/modified_bases_split_by_motif.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,405 copying ./megalodon_extras/validate_compare_modified_bases.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,408 copying ./megalodon_extras/variants_resolve.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,411 copying ./megalodon_extras/calibrate_generate_mod_stats_from_msf.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,413 copying ./megalodon_extras/per_read_text_modified_bases.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,415 copying ./megalodon_extras/modified_bases_index_database.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,418 copying ./megalodon_extras/modified_bases_estimate_threshold.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,420 copying ./megalodon_extras/modified_bases_describe_alphabet.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,422 copying ./megalodon_extras/merge_modified_bases.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,424 copying ./megalodon_extras/aggregate_run.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,426 copying ./megalodon_extras/merge_variants.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,428 copying ./megalodon_extras/__main__.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,431 copying ./megalodon_extras/variants_index_database.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,433 copying ./megalodon_extras/calibrate_modified_bases.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,435 copying ./megalodon_extras/__init__.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,437 copying ./megalodon_extras/phase_variants_whatshap_filter.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,439 copying ./megalodon_extras/modified_bases_update_database.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,441 copying ./megalodon_extras/calibrate_merge_modified_bases_stats.py -> build/lib.linux-armv7l-cpython-311/megalodon_extras 2023-09-13T22:49:15,442 running egg_info 2023-09-13T22:49:15,448 writing megalodon.egg-info/PKG-INFO 2023-09-13T22:49:15,455 writing dependency_links to megalodon.egg-info/dependency_links.txt 2023-09-13T22:49:15,457 writing entry points to megalodon.egg-info/entry_points.txt 2023-09-13T22:49:15,459 writing requirements to megalodon.egg-info/requires.txt 2023-09-13T22:49:15,460 writing top-level names to megalodon.egg-info/top_level.txt 2023-09-13T22:49:15,482 reading manifest file 'megalodon.egg-info/SOURCES.txt' 2023-09-13T22:49:15,487 reading manifest template 'MANIFEST.in' 2023-09-13T22:49:15,494 adding license file 'LICENCE.txt' 2023-09-13T22:49:15,501 writing manifest file 'megalodon.egg-info/SOURCES.txt' 2023-09-13T22:49:15,503 /tmp/pip-build-env-g83iww05/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'megalodon.model_data' is absent from the `packages` configuration. 2023-09-13T22:49:15,504 !! 2023-09-13T22:49:15,505 ******************************************************************************** 2023-09-13T22:49:15,506 ############################ 2023-09-13T22:49:15,506 # Package would be ignored # 2023-09-13T22:49:15,507 ############################ 2023-09-13T22:49:15,508 Python recognizes 'megalodon.model_data' as an importable package[^1], 2023-09-13T22:49:15,508 but it is absent from setuptools' `packages` configuration. 2023-09-13T22:49:15,509 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-13T22:49:15,510 package, please make sure that 'megalodon.model_data' is explicitly added 2023-09-13T22:49:15,510 to the `packages` configuration field. 2023-09-13T22:49:15,511 Alternatively, you can also rely on setuptools' discovery methods 2023-09-13T22:49:15,512 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-13T22:49:15,512 instead of `find_packages(...)`/`find:`). 2023-09-13T22:49:15,514 You can read more about "package discovery" on setuptools documentation page: 2023-09-13T22:49:15,515 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-13T22:49:15,516 If you don't want 'megalodon.model_data' to be distributed and are 2023-09-13T22:49:15,517 already explicitly excluding 'megalodon.model_data' via 2023-09-13T22:49:15,517 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-13T22:49:15,518 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-13T22:49:15,519 combination with a more fine grained `package-data` configuration. 2023-09-13T22:49:15,520 You can read more about "package data files" on setuptools documentation page: 2023-09-13T22:49:15,521 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-13T22:49:15,523 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-13T22:49:15,524 even if it does not contain any `.py` files. 2023-09-13T22:49:15,524 On the other hand, currently there is no concept of package data 2023-09-13T22:49:15,525 directory, all directories are treated like packages. 2023-09-13T22:49:15,525 ******************************************************************************** 2023-09-13T22:49:15,527 !! 2023-09-13T22:49:15,535 check.warn(importable) 2023-09-13T22:49:15,537 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data 2023-09-13T22:49:15,539 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r10.3_450bps_fast.cfg 2023-09-13T22:49:15,540 copying ./megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r10.3_450bps_fast.cfg 2023-09-13T22:49:15,541 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg 2023-09-13T22:49:15,543 copying ./megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg 2023-09-13T22:49:15,575 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r10.3_450bps_hac.cfg 2023-09-13T22:49:15,576 copying ./megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r10.3_450bps_hac.cfg 2023-09-13T22:49:15,615 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg 2023-09-13T22:49:15,616 copying ./megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg 2023-09-13T22:49:15,634 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r10.3_450bps_modbases_5mc_hac_prom.cfg 2023-09-13T22:49:15,635 copying ./megalodon/model_data/dna_r10.3_450bps_modbases_5mc_hac_prom.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r10.3_450bps_modbases_5mc_hac_prom.cfg 2023-09-13T22:49:15,638 copying ./megalodon/model_data/dna_r10.3_450bps_modbases_5mc_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r10.3_450bps_modbases_5mc_hac_prom.cfg 2023-09-13T22:49:15,662 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg 2023-09-13T22:49:15,663 copying ./megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg 2023-09-13T22:49:15,680 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg 2023-09-13T22:49:15,681 copying ./megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg 2023-09-13T22:49:15,700 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg 2023-09-13T22:49:15,701 copying ./megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg 2023-09-13T22:49:15,724 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg 2023-09-13T22:49:15,726 copying ./megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg 2023-09-13T22:49:15,752 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac.cfg 2023-09-13T22:49:15,753 copying ./megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac.cfg 2023-09-13T22:49:15,759 copying ./megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac.cfg 2023-09-13T22:49:15,781 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac_prom.cfg 2023-09-13T22:49:15,783 copying ./megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac_prom.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac_prom.cfg 2023-09-13T22:49:15,787 copying ./megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac_prom.cfg 2023-09-13T22:49:15,812 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg 2023-09-13T22:49:15,814 copying ./megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg 2023-09-13T22:49:15,818 copying ./megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg 2023-09-13T22:49:15,837 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg 2023-09-13T22:49:15,838 copying ./megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg 2023-09-13T22:49:15,842 copying ./megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg 2023-09-13T22:49:15,873 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg 2023-09-13T22:49:15,874 copying ./megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg 2023-09-13T22:49:15,878 copying ./megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg 2023-09-13T22:49:15,907 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg 2023-09-13T22:49:15,908 copying ./megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg 2023-09-13T22:49:15,913 copying ./megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg 2023-09-13T22:49:15,932 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg 2023-09-13T22:49:15,934 copying ./megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg 2023-09-13T22:49:15,938 copying ./megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg 2023-09-13T22:49:15,959 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_v001.cfg 2023-09-13T22:49:15,960 copying ./megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_v001.cfg 2023-09-13T22:49:15,964 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg 2023-09-13T22:49:15,966 copying ./megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg 2023-09-13T22:49:15,969 copying ./megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg 2023-09-13T22:49:15,988 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg 2023-09-13T22:49:15,989 copying ./megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg 2023-09-13T22:49:15,995 copying ./megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg 2023-09-13T22:49:16,017 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg 2023-09-13T22:49:16,019 copying ./megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg 2023-09-13T22:49:16,022 copying ./megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg 2023-09-13T22:49:16,047 creating build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg 2023-09-13T22:49:16,048 copying ./megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg 2023-09-13T22:49:16,052 copying ./megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg 2023-09-13T22:49:16,081 running build_ext 2023-09-13T22:49:20,216 warning: megalodon/_decode.pyx:790:54: Index should be typed for more efficient access 2023-09-13T22:49:22,950 Compiling megalodon/_decode.pyx because it changed. 2023-09-13T22:49:22,951 [1/1] Cythonizing megalodon/_decode.pyx 2023-09-13T22:49:22,951 building 'megalodon.decode' extension 2023-09-13T22:49:22,952 creating build/temp.linux-armv7l-cpython-311 2023-09-13T22:49:22,952 creating build/temp.linux-armv7l-cpython-311/megalodon 2023-09-13T22:49:22,953 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c megalodon/_decode.c -o build/temp.linux-armv7l-cpython-311/megalodon/_decode.o -std=c99 2023-09-13T22:50:00,191 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/megalodon/_decode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/megalodon/decode.cpython-311-arm-linux-gnueabihf.so 2023-09-13T22:50:00,387 installing to build/bdist.linux-armv7l/wheel 2023-09-13T22:50:00,387 running install 2023-09-13T22:50:00,414 running install_lib 2023-09-13T22:50:00,424 creating build/bdist.linux-armv7l 2023-09-13T22:50:00,425 creating build/bdist.linux-armv7l/wheel 2023-09-13T22:50:00,427 creating build/bdist.linux-armv7l/wheel/megalodon 2023-09-13T22:50:00,428 copying build/lib.linux-armv7l-cpython-311/megalodon/megalodon_multiprocessing.py -> build/bdist.linux-armv7l/wheel/megalodon 2023-09-13T22:50:00,431 copying build/lib.linux-armv7l-cpython-311/megalodon/backends.py -> build/bdist.linux-armv7l/wheel/megalodon 2023-09-13T22:50:00,435 copying build/lib.linux-armv7l-cpython-311/megalodon/aggregate.py -> build/bdist.linux-armv7l/wheel/megalodon 2023-09-13T22:50:00,438 copying build/lib.linux-armv7l-cpython-311/megalodon/validation.py -> build/bdist.linux-armv7l/wheel/megalodon 2023-09-13T22:50:00,441 copying build/lib.linux-armv7l-cpython-311/megalodon/megalodon.py -> build/bdist.linux-armv7l/wheel/megalodon 2023-09-13T22:50:00,445 copying build/lib.linux-armv7l-cpython-311/megalodon/mapping.py -> build/bdist.linux-armv7l/wheel/megalodon 2023-09-13T22:50:00,449 creating build/bdist.linux-armv7l/wheel/megalodon/model_data 2023-09-13T22:50:00,451 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg 2023-09-13T22:50:00,452 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg 2023-09-13T22:50:00,479 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg 2023-09-13T22:50:00,484 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg 2023-09-13T22:50:00,485 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg 2023-09-13T22:50:00,511 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_v001.cfg 2023-09-13T22:50:00,513 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_v001.cfg 2023-09-13T22:50:00,517 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg 2023-09-13T22:50:00,518 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg 2023-09-13T22:50:00,538 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg 2023-09-13T22:50:00,542 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg 2023-09-13T22:50:00,543 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg 2023-09-13T22:50:00,565 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg 2023-09-13T22:50:00,566 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg 2023-09-13T22:50:00,594 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg 2023-09-13T22:50:00,595 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg 2023-09-13T22:50:00,613 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg 2023-09-13T22:50:00,617 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg 2023-09-13T22:50:00,618 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg 2023-09-13T22:50:00,639 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg 2023-09-13T22:50:00,642 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg 2023-09-13T22:50:00,644 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg 2023-09-13T22:50:00,671 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg 2023-09-13T22:50:00,672 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg 2023-09-13T22:50:00,690 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg 2023-09-13T22:50:00,691 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg 2023-09-13T22:50:00,710 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg 2023-09-13T22:50:00,714 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac_prom.cfg 2023-09-13T22:50:00,716 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac_prom.cfg 2023-09-13T22:50:00,734 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac_prom.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac_prom.cfg 2023-09-13T22:50:00,738 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac.cfg 2023-09-13T22:50:00,739 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac.cfg 2023-09-13T22:50:00,759 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac.cfg 2023-09-13T22:50:00,764 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg 2023-09-13T22:50:00,765 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg 2023-09-13T22:50:00,800 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg 2023-09-13T22:50:00,806 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg 2023-09-13T22:50:00,807 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg 2023-09-13T22:50:00,829 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_modbases_5mc_hac_prom.cfg 2023-09-13T22:50:00,830 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r10.3_450bps_modbases_5mc_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_modbases_5mc_hac_prom.cfg 2023-09-13T22:50:00,853 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r10.3_450bps_modbases_5mc_hac_prom.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_modbases_5mc_hac_prom.cfg 2023-09-13T22:50:00,857 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg 2023-09-13T22:50:00,858 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg 2023-09-13T22:50:00,876 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg 2023-09-13T22:50:00,881 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg 2023-09-13T22:50:00,882 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg 2023-09-13T22:50:00,910 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg 2023-09-13T22:50:00,915 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg 2023-09-13T22:50:00,916 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg 2023-09-13T22:50:00,933 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg 2023-09-13T22:50:00,934 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg 2023-09-13T22:50:00,955 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg 2023-09-13T22:50:00,959 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg 2023-09-13T22:50:00,960 copying build/lib.linux-armv7l-cpython-311/megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg 2023-09-13T22:50:00,980 copying build/lib.linux-armv7l-cpython-311/megalodon/mods.py -> build/bdist.linux-armv7l/wheel/megalodon 2023-09-13T22:50:00,985 copying build/lib.linux-armv7l-cpython-311/megalodon/calibration.py -> build/bdist.linux-armv7l/wheel/megalodon 2023-09-13T22:50:00,988 copying build/lib.linux-armv7l-cpython-311/megalodon/signal_mapping.py -> build/bdist.linux-armv7l/wheel/megalodon 2023-09-13T22:50:00,990 copying build/lib.linux-armv7l-cpython-311/megalodon/fast5_io.py -> build/bdist.linux-armv7l/wheel/megalodon 2023-09-13T22:50:00,994 copying build/lib.linux-armv7l-cpython-311/megalodon/__main__.py -> build/bdist.linux-armv7l/wheel/megalodon 2023-09-13T22:50:00,997 copying build/lib.linux-armv7l-cpython-311/megalodon/__init__.py -> build/bdist.linux-armv7l/wheel/megalodon 2023-09-13T22:50:00,999 copying build/lib.linux-armv7l-cpython-311/megalodon/decode.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/megalodon 2023-09-13T22:50:01,029 copying build/lib.linux-armv7l-cpython-311/megalodon/megalodon_helper.py -> build/bdist.linux-armv7l/wheel/megalodon 2023-09-13T22:50:01,033 copying build/lib.linux-armv7l-cpython-311/megalodon/variants.py -> build/bdist.linux-armv7l/wheel/megalodon 2023-09-13T22:50:01,041 copying build/lib.linux-armv7l-cpython-311/megalodon/logging.py -> build/bdist.linux-armv7l/wheel/megalodon 2023-09-13T22:50:01,045 creating build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,047 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/variants_atomize.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,050 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/modified_bases_create_motif_bed.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,053 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/calibrate_generate_modified_base_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,056 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/calibrate_generate_variant_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,060 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/validate_results.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,063 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/_extras_parsers.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,069 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/modified_bases_create_ground_truth.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,072 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/phase_variants_extract_haplotype_reads.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,074 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/modified_bases_per_site_thresholds.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,078 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/validate_mod_bases_from_calibration.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,081 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/variants_heterozygous_factor.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,084 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/merge_aggregated_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,087 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/calibrate_merge_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,089 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/phase_variants_merge_haploid_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,093 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/calibrate_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,096 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/validate_aggregated_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,099 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/per_read_text_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,101 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/modified_bases_split_by_motif.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,104 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/validate_compare_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,107 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/variants_resolve.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,109 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/calibrate_generate_mod_stats_from_msf.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,112 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/per_read_text_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,114 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/modified_bases_index_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,117 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/modified_bases_estimate_threshold.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,119 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/modified_bases_describe_alphabet.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,121 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/merge_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,124 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/aggregate_run.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,126 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/merge_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,128 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/__main__.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,131 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/variants_index_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,133 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/calibrate_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,135 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/__init__.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,137 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/phase_variants_whatshap_filter.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,139 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/modified_bases_update_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,142 copying build/lib.linux-armv7l-cpython-311/megalodon_extras/calibrate_merge_modified_bases_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2023-09-13T22:50:01,144 running install_egg_info 2023-09-13T22:50:01,159 Copying megalodon.egg-info to build/bdist.linux-armv7l/wheel/megalodon-2.3.2-py3.11.egg-info 2023-09-13T22:50:01,176 running install_scripts 2023-09-13T22:50:01,248 creating build/bdist.linux-armv7l/wheel/megalodon-2.3.2.dist-info/WHEEL 2023-09-13T22:50:01,252 creating '/tmp/pip-wheel-azgdvh2b/.tmp-fkdu3mlq/megalodon-2.3.2-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-13T22:50:01,255 adding 'megalodon/__init__.py' 2023-09-13T22:50:01,258 adding 'megalodon/__main__.py' 2023-09-13T22:50:01,261 adding 'megalodon/aggregate.py' 2023-09-13T22:50:01,267 adding 'megalodon/backends.py' 2023-09-13T22:50:01,271 adding 'megalodon/calibration.py' 2023-09-13T22:50:01,562 adding 'megalodon/decode.cpython-311-arm-linux-gnueabihf.so' 2023-09-13T22:50:01,574 adding 'megalodon/fast5_io.py' 2023-09-13T22:50:01,576 adding 'megalodon/logging.py' 2023-09-13T22:50:01,579 adding 'megalodon/mapping.py' 2023-09-13T22:50:01,587 adding 'megalodon/megalodon.py' 2023-09-13T22:50:01,592 adding 'megalodon/megalodon_helper.py' 2023-09-13T22:50:01,595 adding 'megalodon/megalodon_multiprocessing.py' 2023-09-13T22:50:01,608 adding 'megalodon/mods.py' 2023-09-13T22:50:01,610 adding 'megalodon/signal_mapping.py' 2023-09-13T22:50:01,612 adding 'megalodon/validation.py' 2023-09-13T22:50:01,625 adding 'megalodon/variants.py' 2023-09-13T22:50:01,690 adding 'megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:01,751 adding 'megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:01,807 adding 'megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:01,879 adding 'megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:01,892 adding 'megalodon/model_data/dna_r10.3_450bps_modbases_5mc_hac_prom.cfg/megalodon_mod_calibration.npz' 2023-09-13T22:50:01,941 adding 'megalodon/model_data/dna_r10.3_450bps_modbases_5mc_hac_prom.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:02,012 adding 'megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:02,078 adding 'megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:02,149 adding 'megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:02,210 adding 'megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:02,222 adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac.cfg/megalodon_mod_calibration.npz' 2023-09-13T22:50:02,267 adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:02,281 adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac_prom.cfg/megalodon_mod_calibration.npz' 2023-09-13T22:50:02,330 adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_5mc_hac_prom.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:02,347 adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz' 2023-09-13T22:50:02,408 adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:02,425 adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz' 2023-09-13T22:50:02,484 adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:02,498 adding 'megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz' 2023-09-13T22:50:02,545 adding 'megalodon/model_data/res_dna_r103_prom_modbases_5mC_v001.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:02,559 adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz' 2023-09-13T22:50:02,608 adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:02,625 adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz' 2023-09-13T22:50:02,681 adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:02,700 adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_v001.cfg/megalodon_mod_calibration.npz' 2023-09-13T22:50:02,707 adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz' 2023-09-13T22:50:02,755 adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:02,767 adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz' 2023-09-13T22:50:02,824 adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_v001.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:02,837 adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz' 2023-09-13T22:50:02,881 adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:02,895 adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg/megalodon_mod_calibration.npz' 2023-09-13T22:50:02,944 adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_v001.cfg/megalodon_variant_calibration.npz' 2023-09-13T22:50:02,955 adding 'megalodon_extras/__init__.py' 2023-09-13T22:50:02,957 adding 'megalodon_extras/__main__.py' 2023-09-13T22:50:02,963 adding 'megalodon_extras/_extras_parsers.py' 2023-09-13T22:50:02,965 adding 'megalodon_extras/aggregate_run.py' 2023-09-13T22:50:02,968 adding 'megalodon_extras/calibrate_generate_mod_stats_from_msf.py' 2023-09-13T22:50:02,970 adding 'megalodon_extras/calibrate_generate_modified_base_stats.py' 2023-09-13T22:50:02,973 adding 'megalodon_extras/calibrate_generate_variant_stats.py' 2023-09-13T22:50:02,975 adding 'megalodon_extras/calibrate_merge_modified_bases.py' 2023-09-13T22:50:02,977 adding 'megalodon_extras/calibrate_merge_modified_bases_stats.py' 2023-09-13T22:50:02,978 adding 'megalodon_extras/calibrate_modified_bases.py' 2023-09-13T22:50:02,980 adding 'megalodon_extras/calibrate_variants.py' 2023-09-13T22:50:02,982 adding 'megalodon_extras/merge_aggregated_modified_bases.py' 2023-09-13T22:50:02,984 adding 'megalodon_extras/merge_modified_bases.py' 2023-09-13T22:50:02,986 adding 'megalodon_extras/merge_variants.py' 2023-09-13T22:50:02,987 adding 'megalodon_extras/modified_bases_create_ground_truth.py' 2023-09-13T22:50:02,989 adding 'megalodon_extras/modified_bases_create_motif_bed.py' 2023-09-13T22:50:02,990 adding 'megalodon_extras/modified_bases_describe_alphabet.py' 2023-09-13T22:50:02,992 adding 'megalodon_extras/modified_bases_estimate_threshold.py' 2023-09-13T22:50:02,993 adding 'megalodon_extras/modified_bases_index_database.py' 2023-09-13T22:50:02,996 adding 'megalodon_extras/modified_bases_per_site_thresholds.py' 2023-09-13T22:50:02,998 adding 'megalodon_extras/modified_bases_split_by_motif.py' 2023-09-13T22:50:02,999 adding 'megalodon_extras/modified_bases_update_database.py' 2023-09-13T22:50:03,001 adding 'megalodon_extras/per_read_text_modified_bases.py' 2023-09-13T22:50:03,003 adding 'megalodon_extras/per_read_text_variants.py' 2023-09-13T22:50:03,004 adding 'megalodon_extras/phase_variants_extract_haplotype_reads.py' 2023-09-13T22:50:03,006 adding 'megalodon_extras/phase_variants_merge_haploid_variants.py' 2023-09-13T22:50:03,008 adding 'megalodon_extras/phase_variants_whatshap_filter.py' 2023-09-13T22:50:03,010 adding 'megalodon_extras/validate_aggregated_modified_bases.py' 2023-09-13T22:50:03,012 adding 'megalodon_extras/validate_compare_modified_bases.py' 2023-09-13T22:50:03,014 adding 'megalodon_extras/validate_mod_bases_from_calibration.py' 2023-09-13T22:50:03,017 adding 'megalodon_extras/validate_results.py' 2023-09-13T22:50:03,019 adding 'megalodon_extras/variants_atomize.py' 2023-09-13T22:50:03,021 adding 'megalodon_extras/variants_heterozygous_factor.py' 2023-09-13T22:50:03,022 adding 'megalodon_extras/variants_index_database.py' 2023-09-13T22:50:03,025 adding 'megalodon_extras/variants_resolve.py' 2023-09-13T22:50:03,027 adding 'megalodon-2.3.2.dist-info/LICENCE.txt' 2023-09-13T22:50:03,030 adding 'megalodon-2.3.2.dist-info/METADATA' 2023-09-13T22:50:03,032 adding 'megalodon-2.3.2.dist-info/WHEEL' 2023-09-13T22:50:03,033 adding 'megalodon-2.3.2.dist-info/entry_points.txt' 2023-09-13T22:50:03,034 adding 'megalodon-2.3.2.dist-info/top_level.txt' 2023-09-13T22:50:03,036 adding 'megalodon-2.3.2.dist-info/RECORD' 2023-09-13T22:50:03,117 removing build/bdist.linux-armv7l/wheel 2023-09-13T22:50:03,612 Building wheel for megalodon (pyproject.toml): finished with status 'done' 2023-09-13T22:50:03,802 Created wheel for megalodon: filename=megalodon-2.3.2-cp311-cp311-linux_armv7l.whl size=6948871 sha256=d4a51933dfe22e9988d650d26575d31a5565f5604e8f9374a4f8cb423bb7ff6a 2023-09-13T22:50:03,804 Stored in directory: /tmp/pip-ephem-wheel-cache-jdp8u2gi/wheels/5e/22/3a/113e6549a5fa5a7b511aacf971cbbe99ac3c4a2ff6f9774b1b 2023-09-13T22:50:03,825 Successfully built megalodon 2023-09-13T22:50:04,023 Removed build tracker: '/tmp/pip-build-tracker-tqlqho9q'