2023-09-14T08:09:32,913 Created temporary directory: /tmp/pip-build-tracker-yxn_h4tl 2023-09-14T08:09:32,914 Initialized build tracking at /tmp/pip-build-tracker-yxn_h4tl 2023-09-14T08:09:32,915 Created build tracker: /tmp/pip-build-tracker-yxn_h4tl 2023-09-14T08:09:32,915 Entered build tracker: /tmp/pip-build-tracker-yxn_h4tl 2023-09-14T08:09:32,916 Created temporary directory: /tmp/pip-wheel-4fcxal6q 2023-09-14T08:09:32,919 Created temporary directory: /tmp/pip-ephem-wheel-cache-xuhr4yae 2023-09-14T08:09:32,942 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-14T08:09:32,946 2 location(s) to search for versions of glycopeptidepy: 2023-09-14T08:09:32,946 * https://pypi.org/simple/glycopeptidepy/ 2023-09-14T08:09:32,946 * https://www.piwheels.org/simple/glycopeptidepy/ 2023-09-14T08:09:32,947 Fetching project page and analyzing links: https://pypi.org/simple/glycopeptidepy/ 2023-09-14T08:09:32,948 Getting page https://pypi.org/simple/glycopeptidepy/ 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2023-09-14T08:09:35,003 Created temporary directory: /tmp/pip-build-env-32atlj3e 2023-09-14T08:09:35,008 Installing build dependencies: started 2023-09-14T08:09:35,009 Running command pip subprocess to install build dependencies 2023-09-14T08:09:36,163 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-14T08:09:36,646 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-14T08:09:38,295 Collecting setuptools 2023-09-14T08:09:38,296 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-14T08:09:38,302 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-14T08:09:38,506 Collecting wheel 2023-09-14T08:09:38,521 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-14T08:09:39,905 Collecting Cython 2023-09-14T08:09:39,906 Obtaining dependency information for Cython from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata 2023-09-14T08:09:39,911 Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-14T08:09:40,214 Collecting glypy 2023-09-14T08:09:40,228 Downloading https://www.piwheels.org/simple/glypy/glypy-1.0.2-cp311-cp311-linux_armv7l.whl (1.7 MB) 2023-09-14T08:09:40,392 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 11.1 MB/s eta 0:00:00 2023-09-14T08:09:40,775 Collecting hjson (from glypy) 2023-09-14T08:09:40,816 Downloading https://www.piwheels.org/simple/hjson/hjson-3.1.0-py3-none-any.whl (54 kB) 2023-09-14T08:09:40,833 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.0/54.0 kB 5.1 MB/s eta 0:00:00 2023-09-14T08:09:40,945 Collecting six (from glypy) 2023-09-14T08:09:40,960 Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB) 2023-09-14T08:09:40,992 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-14T08:09:41,027 Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB) 2023-09-14T08:09:43,539 Installing collected packages: hjson, wheel, six, setuptools, Cython, glypy 2023-09-14T08:09:43,776 Creating /tmp/pip-build-env-32atlj3e/overlay/local/bin 2023-09-14T08:09:43,778 changing mode of /tmp/pip-build-env-32atlj3e/overlay/local/bin/hjson to 755 2023-09-14T08:09:44,004 changing mode of /tmp/pip-build-env-32atlj3e/overlay/local/bin/wheel to 755 2023-09-14T08:09:48,971 changing mode of /tmp/pip-build-env-32atlj3e/overlay/local/bin/cygdb to 755 2023-09-14T08:09:48,974 changing mode of /tmp/pip-build-env-32atlj3e/overlay/local/bin/cython to 755 2023-09-14T08:09:48,976 changing mode of /tmp/pip-build-env-32atlj3e/overlay/local/bin/cythonize to 755 2023-09-14T08:09:50,358 Successfully installed Cython-3.0.2 glypy-1.0.2 hjson-3.1.0 setuptools-68.2.2 six-1.16.0 wheel-0.41.2 2023-09-14T08:09:50,943 Installing build dependencies: finished with status 'done' 2023-09-14T08:09:50,957 Getting requirements to build wheel: started 2023-09-14T08:09:50,958 Running command Getting requirements to build wheel 2023-09-14T08:09:55,359 /tmp/pip-build-env-32atlj3e/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-4fcxal6q/glycopeptidepy_813aae0f3b974a4197068381463a7834/glycopeptidepy/_c/algorithm.pyx 2023-09-14T08:09:55,359 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-14T08:09:56,224 /tmp/pip-build-env-32atlj3e/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-4fcxal6q/glycopeptidepy_813aae0f3b974a4197068381463a7834/glycopeptidepy/_c/collectiontools.pxd 2023-09-14T08:09:56,224 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-14T08:09:58,088 /tmp/pip-build-env-32atlj3e/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-4fcxal6q/glycopeptidepy_813aae0f3b974a4197068381463a7834/glycopeptidepy/_c/count_table.pxd 2023-09-14T08:09:58,089 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-14T08:09:59,683 warning: glycopeptidepy/_c/count_table.pyx:15:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-14T08:09:59,700 warning: glycopeptidepy/_c/count_table.pyx:102:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-14T08:09:59,720 warning: glycopeptidepy/_c/count_table.pyx:184:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-14T08:09:59,723 warning: glycopeptidepy/_c/count_table.pyx:195:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-14T08:09:59,895 Error compiling Cython file: 2023-09-14T08:09:59,896 ------------------------------------------------------------ 2023-09-14T08:09:59,896 ... 2023-09-14T08:09:59,897 pytable[int(12)] = 11 2023-09-14T08:09:59,897 pytable[255.2] = 99 2023-09-14T08:09:59,898 assert len(pytable) == 2 2023-09-14T08:09:59,898 del pytable 2023-09-14T08:09:59,899 pytable = CountTable._create() 2023-09-14T08:09:59,899 print pytable 2023-09-14T08:09:59,900 ^ 2023-09-14T08:09:59,900 ------------------------------------------------------------ 2023-09-14T08:09:59,901 glycopeptidepy/_c/count_table.pyx:952:10: Syntax error in simple statement list 2023-09-14T08:09:59,978 Compiling glycopeptidepy/_c/collectiontools.pyx because it changed. 2023-09-14T08:09:59,979 Compiling glycopeptidepy/_c/count_table.pyx because it changed. 2023-09-14T08:09:59,980 Compiling glycopeptidepy/_c/parser.pyx because it changed. 2023-09-14T08:09:59,980 Compiling glycopeptidepy/_c/structure/base.pyx because it changed. 2023-09-14T08:09:59,981 Compiling glycopeptidepy/_c/structure/fragment.pyx because it changed. 2023-09-14T08:09:59,982 Compiling glycopeptidepy/_c/structure/constants.pyx because it changed. 2023-09-14T08:09:59,982 Compiling glycopeptidepy/_c/structure/glycan.pyx because it changed. 2023-09-14T08:09:59,983 Compiling glycopeptidepy/_c/structure/sequence_methods.pyx because it changed. 2023-09-14T08:09:59,983 Compiling glycopeptidepy/_c/structure/modification/rule.pyx because it changed. 2023-09-14T08:09:59,984 Compiling glycopeptidepy/_c/structure/modification/modification.pyx because it changed. 2023-09-14T08:09:59,985 Compiling glycopeptidepy/_c/structure/modification/source.pyx because it changed. 2023-09-14T08:09:59,985 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it changed. 2023-09-14T08:09:59,986 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it changed. 2023-09-14T08:09:59,986 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it changed. 2023-09-14T08:09:59,987 Compiling glycopeptidepy/_c/algorithm.pyx because it changed. 2023-09-14T08:09:59,987 [ 1/15] Cythonizing glycopeptidepy/_c/algorithm.pyx 2023-09-14T08:09:59,987 [ 2/15] Cythonizing glycopeptidepy/_c/collectiontools.pyx 2023-09-14T08:09:59,988 [ 3/15] Cythonizing glycopeptidepy/_c/count_table.pyx 2023-09-14T08:09:59,988 running egg_info 2023-09-14T08:09:59,989 writing glycopeptidepy.egg-info/PKG-INFO 2023-09-14T08:09:59,990 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2023-09-14T08:09:59,992 writing requirements to glycopeptidepy.egg-info/requires.txt 2023-09-14T08:09:59,993 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2023-09-14T08:10:00,029 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-14T08:10:00,037 reading manifest template 'MANIFEST.in' 2023-09-14T08:10:00,038 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-14T08:10:00,038 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-14T08:10:00,202 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-14T08:10:00,204 *************************************************************************** 2023-09-14T08:10:00,205 WARNING: The C extension could not be compiled, speedups are not enabled. 2023-09-14T08:10:00,206 Plain-Python build succeeded. 2023-09-14T08:10:00,207 *************************************************************************** 2023-09-14T08:10:00,464 Getting requirements to build wheel: finished with status 'done' 2023-09-14T08:10:00,474 Created temporary directory: /tmp/pip-modern-metadata-xd7ujk6y 2023-09-14T08:10:00,477 Preparing metadata (pyproject.toml): started 2023-09-14T08:10:00,478 Running command Preparing metadata (pyproject.toml) 2023-09-14T08:10:04,333 /tmp/pip-build-env-32atlj3e/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-4fcxal6q/glycopeptidepy_813aae0f3b974a4197068381463a7834/glycopeptidepy/_c/count_table.pxd 2023-09-14T08:10:04,334 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-14T08:10:05,883 warning: glycopeptidepy/_c/count_table.pyx:15:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-14T08:10:05,901 warning: glycopeptidepy/_c/count_table.pyx:102:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-14T08:10:05,921 warning: glycopeptidepy/_c/count_table.pyx:184:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-14T08:10:05,924 warning: glycopeptidepy/_c/count_table.pyx:195:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-14T08:10:06,105 Error compiling Cython file: 2023-09-14T08:10:06,105 ------------------------------------------------------------ 2023-09-14T08:10:06,106 ... 2023-09-14T08:10:06,106 pytable[int(12)] = 11 2023-09-14T08:10:06,107 pytable[255.2] = 99 2023-09-14T08:10:06,107 assert len(pytable) == 2 2023-09-14T08:10:06,108 del pytable 2023-09-14T08:10:06,108 pytable = CountTable._create() 2023-09-14T08:10:06,109 print pytable 2023-09-14T08:10:06,109 ^ 2023-09-14T08:10:06,109 ------------------------------------------------------------ 2023-09-14T08:10:06,110 glycopeptidepy/_c/count_table.pyx:952:10: Syntax error in simple statement list 2023-09-14T08:10:06,161 Compiling glycopeptidepy/_c/count_table.pyx because it changed. 2023-09-14T08:10:06,162 Compiling glycopeptidepy/_c/parser.pyx because it changed. 2023-09-14T08:10:06,162 Compiling glycopeptidepy/_c/structure/base.pyx because it changed. 2023-09-14T08:10:06,163 Compiling glycopeptidepy/_c/structure/fragment.pyx because it changed. 2023-09-14T08:10:06,163 Compiling glycopeptidepy/_c/structure/constants.pyx because it changed. 2023-09-14T08:10:06,164 Compiling glycopeptidepy/_c/structure/glycan.pyx because it changed. 2023-09-14T08:10:06,164 Compiling glycopeptidepy/_c/structure/sequence_methods.pyx because it changed. 2023-09-14T08:10:06,165 Compiling glycopeptidepy/_c/structure/modification/rule.pyx because it changed. 2023-09-14T08:10:06,165 Compiling glycopeptidepy/_c/structure/modification/modification.pyx because it changed. 2023-09-14T08:10:06,166 Compiling glycopeptidepy/_c/structure/modification/source.pyx because it changed. 2023-09-14T08:10:06,166 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it changed. 2023-09-14T08:10:06,166 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it changed. 2023-09-14T08:10:06,167 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it changed. 2023-09-14T08:10:06,168 [ 1/13] Cythonizing glycopeptidepy/_c/count_table.pyx 2023-09-14T08:10:06,168 running dist_info 2023-09-14T08:10:06,185 creating /tmp/pip-modern-metadata-xd7ujk6y/glycopeptidepy.egg-info 2023-09-14T08:10:06,191 writing /tmp/pip-modern-metadata-xd7ujk6y/glycopeptidepy.egg-info/PKG-INFO 2023-09-14T08:10:06,195 writing dependency_links to /tmp/pip-modern-metadata-xd7ujk6y/glycopeptidepy.egg-info/dependency_links.txt 2023-09-14T08:10:06,196 writing requirements to /tmp/pip-modern-metadata-xd7ujk6y/glycopeptidepy.egg-info/requires.txt 2023-09-14T08:10:06,197 writing top-level names to /tmp/pip-modern-metadata-xd7ujk6y/glycopeptidepy.egg-info/top_level.txt 2023-09-14T08:10:06,199 writing manifest file '/tmp/pip-modern-metadata-xd7ujk6y/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-14T08:10:06,227 reading manifest file '/tmp/pip-modern-metadata-xd7ujk6y/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-14T08:10:06,230 reading manifest template 'MANIFEST.in' 2023-09-14T08:10:06,230 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-14T08:10:06,231 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-14T08:10:06,398 writing manifest file '/tmp/pip-modern-metadata-xd7ujk6y/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-14T08:10:06,400 creating '/tmp/pip-modern-metadata-xd7ujk6y/glycopeptidepy-0.0.10.dist-info' 2023-09-14T08:10:06,479 *************************************************************************** 2023-09-14T08:10:06,480 WARNING: The C extension could not be compiled, speedups are not enabled. 2023-09-14T08:10:06,481 Plain-Python build succeeded. 2023-09-14T08:10:06,482 *************************************************************************** 2023-09-14T08:10:06,746 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-14T08:10:06,751 Source in /tmp/pip-wheel-4fcxal6q/glycopeptidepy_813aae0f3b974a4197068381463a7834 has version 0.0.10, which satisfies requirement glycopeptidepy==0.0.10 from https://files.pythonhosted.org/packages/9b/6b/95d2dd54c15bb66c01d68633d329ca8fce2a879e93c75b99758d64e369a0/glycopeptidepy-0.0.10.tar.gz 2023-09-14T08:10:06,751 Removed glycopeptidepy==0.0.10 from https://files.pythonhosted.org/packages/9b/6b/95d2dd54c15bb66c01d68633d329ca8fce2a879e93c75b99758d64e369a0/glycopeptidepy-0.0.10.tar.gz from build tracker '/tmp/pip-build-tracker-yxn_h4tl' 2023-09-14T08:10:06,755 Created temporary directory: /tmp/pip-unpack-2w6d56u7 2023-09-14T08:10:06,756 Created temporary directory: /tmp/pip-unpack-9lyzdq8_ 2023-09-14T08:10:06,765 Building wheels for collected packages: glycopeptidepy 2023-09-14T08:10:06,769 Created temporary directory: /tmp/pip-wheel-04o58vc7 2023-09-14T08:10:06,770 Destination directory: /tmp/pip-wheel-04o58vc7 2023-09-14T08:10:06,772 Building wheel for glycopeptidepy (pyproject.toml): started 2023-09-14T08:10:06,773 Running command Building wheel for glycopeptidepy (pyproject.toml) 2023-09-14T08:10:10,526 /tmp/pip-build-env-32atlj3e/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-4fcxal6q/glycopeptidepy_813aae0f3b974a4197068381463a7834/glycopeptidepy/_c/count_table.pxd 2023-09-14T08:10:10,526 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-14T08:10:12,049 warning: glycopeptidepy/_c/count_table.pyx:15:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-14T08:10:12,066 warning: glycopeptidepy/_c/count_table.pyx:102:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-14T08:10:12,086 warning: glycopeptidepy/_c/count_table.pyx:184:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-14T08:10:12,089 warning: glycopeptidepy/_c/count_table.pyx:195:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-14T08:10:12,273 Error compiling Cython file: 2023-09-14T08:10:12,274 ------------------------------------------------------------ 2023-09-14T08:10:12,274 ... 2023-09-14T08:10:12,275 pytable[int(12)] = 11 2023-09-14T08:10:12,275 pytable[255.2] = 99 2023-09-14T08:10:12,276 assert len(pytable) == 2 2023-09-14T08:10:12,276 del pytable 2023-09-14T08:10:12,277 pytable = CountTable._create() 2023-09-14T08:10:12,277 print pytable 2023-09-14T08:10:12,278 ^ 2023-09-14T08:10:12,278 ------------------------------------------------------------ 2023-09-14T08:10:12,280 glycopeptidepy/_c/count_table.pyx:952:10: Syntax error in simple statement list 2023-09-14T08:10:12,367 Compiling glycopeptidepy/_c/count_table.pyx because it changed. 2023-09-14T08:10:12,368 Compiling glycopeptidepy/_c/parser.pyx because it changed. 2023-09-14T08:10:12,368 Compiling glycopeptidepy/_c/structure/base.pyx because it changed. 2023-09-14T08:10:12,369 Compiling glycopeptidepy/_c/structure/fragment.pyx because it changed. 2023-09-14T08:10:12,370 Compiling glycopeptidepy/_c/structure/constants.pyx because it changed. 2023-09-14T08:10:12,370 Compiling glycopeptidepy/_c/structure/glycan.pyx because it changed. 2023-09-14T08:10:12,371 Compiling glycopeptidepy/_c/structure/sequence_methods.pyx because it changed. 2023-09-14T08:10:12,371 Compiling glycopeptidepy/_c/structure/modification/rule.pyx because it changed. 2023-09-14T08:10:12,372 Compiling glycopeptidepy/_c/structure/modification/modification.pyx because it changed. 2023-09-14T08:10:12,373 Compiling glycopeptidepy/_c/structure/modification/source.pyx because it changed. 2023-09-14T08:10:12,373 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it changed. 2023-09-14T08:10:12,374 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it changed. 2023-09-14T08:10:12,375 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it changed. 2023-09-14T08:10:12,375 [ 1/13] Cythonizing glycopeptidepy/_c/count_table.pyx 2023-09-14T08:10:12,375 running bdist_wheel 2023-09-14T08:10:12,403 running build 2023-09-14T08:10:12,404 running build_py 2023-09-14T08:10:12,412 creating build 2023-09-14T08:10:12,412 creating build/lib 2023-09-14T08:10:12,413 creating build/lib/glycopeptidepy 2023-09-14T08:10:12,414 copying glycopeptidepy/algorithm.py -> build/lib/glycopeptidepy 2023-09-14T08:10:12,417 copying glycopeptidepy/__init__.py -> build/lib/glycopeptidepy 2023-09-14T08:10:12,418 copying glycopeptidepy/enzyme.py -> build/lib/glycopeptidepy 2023-09-14T08:10:12,420 copying glycopeptidepy/version.py -> build/lib/glycopeptidepy 2023-09-14T08:10:12,422 creating build/lib/glycopeptidepy/io 2023-09-14T08:10:12,423 copying glycopeptidepy/io/fasta.py -> build/lib/glycopeptidepy/io 2023-09-14T08:10:12,426 copying glycopeptidepy/io/__init__.py -> build/lib/glycopeptidepy/io 2023-09-14T08:10:12,428 copying glycopeptidepy/io/utils.py -> build/lib/glycopeptidepy/io 2023-09-14T08:10:12,429 copying glycopeptidepy/io/annotation.py -> build/lib/glycopeptidepy/io 2023-09-14T08:10:12,431 copying glycopeptidepy/io/nextprot.py -> build/lib/glycopeptidepy/io 2023-09-14T08:10:12,433 copying glycopeptidepy/io/uniprot.py -> build/lib/glycopeptidepy/io 2023-09-14T08:10:12,436 creating build/lib/glycopeptidepy/utils 2023-09-14T08:10:12,437 copying glycopeptidepy/utils/collectiontools.py -> build/lib/glycopeptidepy/utils 2023-09-14T08:10:12,439 copying glycopeptidepy/utils/sequence_tree.py -> build/lib/glycopeptidepy/utils 2023-09-14T08:10:12,441 copying glycopeptidepy/utils/__init__.py -> build/lib/glycopeptidepy/utils 2023-09-14T08:10:12,443 copying glycopeptidepy/utils/iterators.py -> build/lib/glycopeptidepy/utils 2023-09-14T08:10:12,444 copying glycopeptidepy/utils/intervals.py -> build/lib/glycopeptidepy/utils 2023-09-14T08:10:12,447 copying glycopeptidepy/utils/memoize.py -> build/lib/glycopeptidepy/utils 2023-09-14T08:10:12,449 creating build/lib/glycopeptidepy/structure 2023-09-14T08:10:12,450 copying glycopeptidepy/structure/terminal_group.py -> build/lib/glycopeptidepy/structure 2023-09-14T08:10:12,452 copying glycopeptidepy/structure/base.py -> build/lib/glycopeptidepy/structure 2023-09-14T08:10:12,453 copying glycopeptidepy/structure/__init__.py -> build/lib/glycopeptidepy/structure 2023-09-14T08:10:12,455 copying glycopeptidepy/structure/parser.py -> build/lib/glycopeptidepy/structure 2023-09-14T08:10:12,457 copying glycopeptidepy/structure/residue.py -> build/lib/glycopeptidepy/structure 2023-09-14T08:10:12,459 copying glycopeptidepy/structure/composition.py -> build/lib/glycopeptidepy/structure 2023-09-14T08:10:12,461 copying glycopeptidepy/structure/sequence_composition.py -> build/lib/glycopeptidepy/structure 2023-09-14T08:10:12,463 copying glycopeptidepy/structure/glycan.py -> build/lib/glycopeptidepy/structure 2023-09-14T08:10:12,465 copying glycopeptidepy/structure/constants.py -> build/lib/glycopeptidepy/structure 2023-09-14T08:10:12,467 copying glycopeptidepy/structure/fragment.py -> build/lib/glycopeptidepy/structure 2023-09-14T08:10:12,470 creating build/lib/glycopeptidepy/_c 2023-09-14T08:10:12,471 copying glycopeptidepy/_c/__init__.py -> build/lib/glycopeptidepy/_c 2023-09-14T08:10:12,472 copying glycopeptidepy/_c/cythonize.py -> build/lib/glycopeptidepy/_c 2023-09-14T08:10:12,475 creating build/lib/glycopeptidepy/test 2023-09-14T08:10:12,476 copying glycopeptidepy/test/test_utils.py -> build/lib/glycopeptidepy/test 2023-09-14T08:10:12,478 copying glycopeptidepy/test/test_fragment.py -> build/lib/glycopeptidepy/test 2023-09-14T08:10:12,479 copying glycopeptidepy/test/test_sequence.py -> build/lib/glycopeptidepy/test 2023-09-14T08:10:12,482 copying glycopeptidepy/test/__init__.py -> build/lib/glycopeptidepy/test 2023-09-14T08:10:12,483 copying glycopeptidepy/test/test_intervals.py -> build/lib/glycopeptidepy/test 2023-09-14T08:10:12,484 copying glycopeptidepy/test/test_residue.py -> build/lib/glycopeptidepy/test 2023-09-14T08:10:12,486 copying glycopeptidepy/test/test_uniprot.py -> build/lib/glycopeptidepy/test 2023-09-14T08:10:12,488 copying glycopeptidepy/test/test_sequence_composition.py -> build/lib/glycopeptidepy/test 2023-09-14T08:10:12,489 copying glycopeptidepy/test/test_fragmentation_strategy.py -> build/lib/glycopeptidepy/test 2023-09-14T08:10:12,491 copying glycopeptidepy/test/test_modification.py -> build/lib/glycopeptidepy/test 2023-09-14T08:10:12,493 copying glycopeptidepy/test/test_fasta.py -> build/lib/glycopeptidepy/test 2023-09-14T08:10:12,494 copying glycopeptidepy/test/test_enzyme.py -> build/lib/glycopeptidepy/test 2023-09-14T08:10:12,496 copying glycopeptidepy/test/common.py -> build/lib/glycopeptidepy/test 2023-09-14T08:10:12,498 copying glycopeptidepy/test/test_algorithms.py -> build/lib/glycopeptidepy/test 2023-09-14T08:10:12,500 creating build/lib/glycopeptidepy/io/cv 2023-09-14T08:10:12,501 copying glycopeptidepy/io/cv/uniprot_ptm.py -> build/lib/glycopeptidepy/io/cv 2023-09-14T08:10:12,502 copying glycopeptidepy/io/cv/__init__.py -> build/lib/glycopeptidepy/io/cv 2023-09-14T08:10:12,504 copying glycopeptidepy/io/cv/term.py -> build/lib/glycopeptidepy/io/cv 2023-09-14T08:10:12,506 copying glycopeptidepy/io/cv/peff.py -> build/lib/glycopeptidepy/io/cv 2023-09-14T08:10:12,508 creating build/lib/glycopeptidepy/structure/fragmentation_strategy 2023-09-14T08:10:12,509 copying glycopeptidepy/structure/fragmentation_strategy/base.py -> build/lib/glycopeptidepy/structure/fragmentation_strategy 2023-09-14T08:10:12,511 copying glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/lib/glycopeptidepy/structure/fragmentation_strategy 2023-09-14T08:10:12,513 copying glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/lib/glycopeptidepy/structure/fragmentation_strategy 2023-09-14T08:10:12,515 copying glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/lib/glycopeptidepy/structure/fragmentation_strategy 2023-09-14T08:10:12,519 creating build/lib/glycopeptidepy/structure/modification 2023-09-14T08:10:12,520 copying glycopeptidepy/structure/modification/rule.py -> build/lib/glycopeptidepy/structure/modification 2023-09-14T08:10:12,522 copying glycopeptidepy/structure/modification/source.py -> build/lib/glycopeptidepy/structure/modification 2023-09-14T08:10:12,525 copying glycopeptidepy/structure/modification/__init__.py -> build/lib/glycopeptidepy/structure/modification 2023-09-14T08:10:12,527 copying glycopeptidepy/structure/modification/modification.py -> build/lib/glycopeptidepy/structure/modification 2023-09-14T08:10:12,529 copying glycopeptidepy/structure/modification/utils.py -> build/lib/glycopeptidepy/structure/modification 2023-09-14T08:10:12,530 copying glycopeptidepy/structure/modification/descriptors.py -> build/lib/glycopeptidepy/structure/modification 2023-09-14T08:10:12,532 copying glycopeptidepy/structure/modification/target.py -> build/lib/glycopeptidepy/structure/modification 2023-09-14T08:10:12,534 copying glycopeptidepy/structure/modification/glycosylation.py -> build/lib/glycopeptidepy/structure/modification 2023-09-14T08:10:12,537 creating build/lib/glycopeptidepy/structure/sequence 2023-09-14T08:10:12,538 copying glycopeptidepy/structure/sequence/implementation.py -> build/lib/glycopeptidepy/structure/sequence 2023-09-14T08:10:12,541 copying glycopeptidepy/structure/sequence/base.py -> build/lib/glycopeptidepy/structure/sequence 2023-09-14T08:10:12,543 copying glycopeptidepy/structure/sequence/__init__.py -> build/lib/glycopeptidepy/structure/sequence 2023-09-14T08:10:12,545 copying glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/lib/glycopeptidepy/structure/sequence 2023-09-14T08:10:12,547 copying glycopeptidepy/structure/sequence/mutable_sequence.py -> build/lib/glycopeptidepy/structure/sequence 2023-09-14T08:10:12,550 creating build/lib/glycopeptidepy/structure/modification/data 2023-09-14T08:10:12,550 copying glycopeptidepy/structure/modification/data/unimod.py -> build/lib/glycopeptidepy/structure/modification/data 2023-09-14T08:10:12,553 copying glycopeptidepy/structure/modification/data/__init__.py -> build/lib/glycopeptidepy/structure/modification/data 2023-09-14T08:10:12,555 copying glycopeptidepy/structure/modification/data/patch_unimod.py -> build/lib/glycopeptidepy/structure/modification/data 2023-09-14T08:10:12,557 creating build/lib/glycopeptidepy/_c/structure 2023-09-14T08:10:12,558 copying glycopeptidepy/_c/structure/__init__.py -> build/lib/glycopeptidepy/_c/structure 2023-09-14T08:10:12,560 creating build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:12,560 copying glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:12,562 creating build/lib/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:12,564 copying glycopeptidepy/_c/structure/modification/__init__.py -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:12,565 running egg_info 2023-09-14T08:10:12,571 writing glycopeptidepy.egg-info/PKG-INFO 2023-09-14T08:10:12,574 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2023-09-14T08:10:12,575 writing requirements to glycopeptidepy.egg-info/requires.txt 2023-09-14T08:10:12,576 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2023-09-14T08:10:12,592 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-14T08:10:12,597 reading manifest template 'MANIFEST.in' 2023-09-14T08:10:12,598 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-14T08:10:12,598 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-14T08:10:12,795 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-14T08:10:12,803 copying glycopeptidepy/_c/algorithm.c -> build/lib/glycopeptidepy/_c 2023-09-14T08:10:12,813 copying glycopeptidepy/_c/algorithm.pyx -> build/lib/glycopeptidepy/_c 2023-09-14T08:10:12,815 copying glycopeptidepy/_c/collectiontools.c -> build/lib/glycopeptidepy/_c 2023-09-14T08:10:12,825 copying glycopeptidepy/_c/collectiontools.pxd -> build/lib/glycopeptidepy/_c 2023-09-14T08:10:12,827 copying glycopeptidepy/_c/collectiontools.pyx -> build/lib/glycopeptidepy/_c 2023-09-14T08:10:12,829 copying glycopeptidepy/_c/compat.h -> build/lib/glycopeptidepy/_c 2023-09-14T08:10:12,831 copying glycopeptidepy/_c/compat.pxd -> build/lib/glycopeptidepy/_c 2023-09-14T08:10:12,833 copying glycopeptidepy/_c/count_table.c -> build/lib/glycopeptidepy/_c 2023-09-14T08:10:12,835 copying glycopeptidepy/_c/count_table.pxd -> build/lib/glycopeptidepy/_c 2023-09-14T08:10:12,837 copying glycopeptidepy/_c/count_table.pyx -> build/lib/glycopeptidepy/_c 2023-09-14T08:10:12,840 copying glycopeptidepy/_c/parser.c -> build/lib/glycopeptidepy/_c 2023-09-14T08:10:12,848 copying glycopeptidepy/_c/parser.pxd -> build/lib/glycopeptidepy/_c 2023-09-14T08:10:12,851 copying glycopeptidepy/_c/parser.pyx -> build/lib/glycopeptidepy/_c 2023-09-14T08:10:12,856 copying glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/lib/glycopeptidepy/structure/modification/data 2023-09-14T08:10:12,860 copying glycopeptidepy/structure/modification/data/unimod.json -> build/lib/glycopeptidepy/structure/modification/data 2023-09-14T08:10:13,128 copying glycopeptidepy/_c/structure/base.c -> build/lib/glycopeptidepy/_c/structure 2023-09-14T08:10:13,153 copying glycopeptidepy/_c/structure/base.pxd -> build/lib/glycopeptidepy/_c/structure 2023-09-14T08:10:13,156 copying glycopeptidepy/_c/structure/base.pyx -> build/lib/glycopeptidepy/_c/structure 2023-09-14T08:10:13,159 copying glycopeptidepy/_c/structure/constants.c -> build/lib/glycopeptidepy/_c/structure 2023-09-14T08:10:13,169 copying glycopeptidepy/_c/structure/constants.pxd -> build/lib/glycopeptidepy/_c/structure 2023-09-14T08:10:13,172 copying glycopeptidepy/_c/structure/constants.pyx -> build/lib/glycopeptidepy/_c/structure 2023-09-14T08:10:13,174 copying glycopeptidepy/_c/structure/fragment.c -> build/lib/glycopeptidepy/_c/structure 2023-09-14T08:10:13,206 copying glycopeptidepy/_c/structure/fragment.pxd -> build/lib/glycopeptidepy/_c/structure 2023-09-14T08:10:13,208 copying glycopeptidepy/_c/structure/fragment.pyx -> build/lib/glycopeptidepy/_c/structure 2023-09-14T08:10:13,211 copying glycopeptidepy/_c/structure/glycan.c -> build/lib/glycopeptidepy/_c/structure 2023-09-14T08:10:13,224 copying glycopeptidepy/_c/structure/glycan.pxd -> build/lib/glycopeptidepy/_c/structure 2023-09-14T08:10:13,226 copying glycopeptidepy/_c/structure/glycan.pyx -> build/lib/glycopeptidepy/_c/structure 2023-09-14T08:10:13,228 copying glycopeptidepy/_c/structure/sequence_methods.c -> build/lib/glycopeptidepy/_c/structure 2023-09-14T08:10:13,244 copying glycopeptidepy/_c/structure/sequence_methods.pxd -> build/lib/glycopeptidepy/_c/structure 2023-09-14T08:10:13,245 copying glycopeptidepy/_c/structure/sequence_methods.pyx -> build/lib/glycopeptidepy/_c/structure 2023-09-14T08:10:13,248 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,255 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,256 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,258 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,288 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,290 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,294 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,322 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,324 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,327 copying glycopeptidepy/_c/structure/modification/modification.c -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,337 copying glycopeptidepy/_c/structure/modification/modification.pxd -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,339 copying glycopeptidepy/_c/structure/modification/modification.pyx -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,342 copying glycopeptidepy/_c/structure/modification/rule.c -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,359 copying glycopeptidepy/_c/structure/modification/rule.pxd -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,363 copying glycopeptidepy/_c/structure/modification/rule.pyx -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,368 copying glycopeptidepy/_c/structure/modification/source.c -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,378 copying glycopeptidepy/_c/structure/modification/source.pxd -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,380 copying glycopeptidepy/_c/structure/modification/source.pyx -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,382 copying glycopeptidepy/_c/structure/modification/target.pyx -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,403 installing to build/bdist.linux-armv7l/wheel 2023-09-14T08:10:13,404 running install 2023-09-14T08:10:13,431 running install_lib 2023-09-14T08:10:13,440 creating build/bdist.linux-armv7l 2023-09-14T08:10:13,440 creating build/bdist.linux-armv7l/wheel 2023-09-14T08:10:13,442 creating build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-14T08:10:13,444 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-14T08:10:13,445 copying build/lib/glycopeptidepy/io/fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-14T08:10:13,449 copying build/lib/glycopeptidepy/io/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-14T08:10:13,450 copying build/lib/glycopeptidepy/io/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-14T08:10:13,452 copying build/lib/glycopeptidepy/io/annotation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-14T08:10:13,455 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-14T08:10:13,456 copying build/lib/glycopeptidepy/io/cv/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-14T08:10:13,459 copying build/lib/glycopeptidepy/io/cv/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-14T08:10:13,460 copying build/lib/glycopeptidepy/io/cv/term.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-14T08:10:13,463 copying build/lib/glycopeptidepy/io/cv/peff.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-14T08:10:13,465 copying build/lib/glycopeptidepy/io/nextprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-14T08:10:13,467 copying build/lib/glycopeptidepy/io/uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-14T08:10:13,470 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-14T08:10:13,472 copying build/lib/glycopeptidepy/utils/collectiontools.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-14T08:10:13,474 copying build/lib/glycopeptidepy/utils/sequence_tree.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-14T08:10:13,477 copying build/lib/glycopeptidepy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-14T08:10:13,479 copying build/lib/glycopeptidepy/utils/iterators.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-14T08:10:13,481 copying build/lib/glycopeptidepy/utils/intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-14T08:10:13,483 copying build/lib/glycopeptidepy/utils/memoize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-14T08:10:13,486 copying build/lib/glycopeptidepy/algorithm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-14T08:10:13,488 copying build/lib/glycopeptidepy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-14T08:10:13,491 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-14T08:10:13,492 copying build/lib/glycopeptidepy/structure/terminal_group.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-14T08:10:13,494 copying build/lib/glycopeptidepy/structure/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-14T08:10:13,496 copying build/lib/glycopeptidepy/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-14T08:10:13,499 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-14T08:10:13,500 copying build/lib/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-14T08:10:13,502 copying build/lib/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-14T08:10:13,504 copying build/lib/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-14T08:10:13,508 copying build/lib/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-14T08:10:13,511 copying build/lib/glycopeptidepy/structure/parser.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-14T08:10:13,513 copying build/lib/glycopeptidepy/structure/residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-14T08:10:13,516 copying build/lib/glycopeptidepy/structure/composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-14T08:10:13,518 copying build/lib/glycopeptidepy/structure/sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-14T08:10:13,521 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-14T08:10:13,522 copying build/lib/glycopeptidepy/structure/modification/rule.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-14T08:10:13,525 copying build/lib/glycopeptidepy/structure/modification/source.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-14T08:10:13,527 copying build/lib/glycopeptidepy/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-14T08:10:13,529 copying build/lib/glycopeptidepy/structure/modification/modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-14T08:10:13,532 copying build/lib/glycopeptidepy/structure/modification/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-14T08:10:13,534 copying build/lib/glycopeptidepy/structure/modification/descriptors.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-14T08:10:13,536 copying build/lib/glycopeptidepy/structure/modification/target.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-14T08:10:13,539 copying build/lib/glycopeptidepy/structure/modification/glycosylation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-14T08:10:13,542 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-14T08:10:13,543 copying build/lib/glycopeptidepy/structure/modification/data/unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-14T08:10:13,546 copying build/lib/glycopeptidepy/structure/modification/data/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-14T08:10:13,548 copying build/lib/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-14T08:10:13,550 copying build/lib/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-14T08:10:13,552 copying build/lib/glycopeptidepy/structure/modification/data/unimod.json -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-14T08:10:13,589 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-14T08:10:13,590 copying build/lib/glycopeptidepy/structure/sequence/implementation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-14T08:10:13,592 copying build/lib/glycopeptidepy/structure/sequence/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-14T08:10:13,596 copying build/lib/glycopeptidepy/structure/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-14T08:10:13,598 copying build/lib/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-14T08:10:13,600 copying build/lib/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-14T08:10:13,603 copying build/lib/glycopeptidepy/structure/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-14T08:10:13,605 copying build/lib/glycopeptidepy/structure/constants.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-14T08:10:13,607 copying build/lib/glycopeptidepy/structure/fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-14T08:10:13,611 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-14T08:10:13,612 copying build/lib/glycopeptidepy/_c/compat.h -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-14T08:10:13,614 copying build/lib/glycopeptidepy/_c/algorithm.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-14T08:10:13,625 copying build/lib/glycopeptidepy/_c/parser.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-14T08:10:13,628 copying build/lib/glycopeptidepy/_c/collectiontools.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-14T08:10:13,630 copying build/lib/glycopeptidepy/_c/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-14T08:10:13,632 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-14T08:10:13,633 copying build/lib/glycopeptidepy/_c/structure/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-14T08:10:13,636 copying build/lib/glycopeptidepy/_c/structure/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-14T08:10:13,647 copying build/lib/glycopeptidepy/_c/structure/constants.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-14T08:10:13,653 copying build/lib/glycopeptidepy/_c/structure/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-14T08:10:13,670 copying build/lib/glycopeptidepy/_c/structure/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-14T08:10:13,672 copying build/lib/glycopeptidepy/_c/structure/constants.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-14T08:10:13,674 copying build/lib/glycopeptidepy/_c/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-14T08:10:13,676 copying build/lib/glycopeptidepy/_c/structure/constants.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-14T08:10:13,678 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,679 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,681 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,703 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,710 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,712 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,713 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,715 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,717 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,735 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,738 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-14T08:10:13,740 copying build/lib/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-14T08:10:13,742 copying build/lib/glycopeptidepy/_c/structure/sequence_methods.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-14T08:10:13,756 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,757 copying build/lib/glycopeptidepy/_c/structure/modification/modification.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,759 copying build/lib/glycopeptidepy/_c/structure/modification/rule.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,761 copying build/lib/glycopeptidepy/_c/structure/modification/modification.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,762 copying build/lib/glycopeptidepy/_c/structure/modification/rule.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,765 copying build/lib/glycopeptidepy/_c/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,766 copying build/lib/glycopeptidepy/_c/structure/modification/source.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,768 copying build/lib/glycopeptidepy/_c/structure/modification/modification.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,774 copying build/lib/glycopeptidepy/_c/structure/modification/source.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,776 copying build/lib/glycopeptidepy/_c/structure/modification/target.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,778 copying build/lib/glycopeptidepy/_c/structure/modification/rule.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,789 copying build/lib/glycopeptidepy/_c/structure/modification/source.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-14T08:10:13,796 copying build/lib/glycopeptidepy/_c/structure/fragment.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-14T08:10:13,798 copying build/lib/glycopeptidepy/_c/structure/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-14T08:10:13,800 copying build/lib/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-14T08:10:13,802 copying build/lib/glycopeptidepy/_c/structure/fragment.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-14T08:10:13,831 copying build/lib/glycopeptidepy/_c/structure/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-14T08:10:13,833 copying build/lib/glycopeptidepy/_c/structure/fragment.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-14T08:10:13,836 copying build/lib/glycopeptidepy/_c/compat.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-14T08:10:13,837 copying build/lib/glycopeptidepy/_c/parser.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-14T08:10:13,839 copying build/lib/glycopeptidepy/_c/count_table.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-14T08:10:13,842 copying build/lib/glycopeptidepy/_c/collectiontools.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-14T08:10:13,843 copying build/lib/glycopeptidepy/_c/count_table.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-14T08:10:13,845 copying build/lib/glycopeptidepy/_c/count_table.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-14T08:10:13,847 copying build/lib/glycopeptidepy/_c/parser.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-14T08:10:13,855 copying build/lib/glycopeptidepy/_c/cythonize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-14T08:10:13,857 copying build/lib/glycopeptidepy/_c/collectiontools.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-14T08:10:13,868 copying build/lib/glycopeptidepy/_c/algorithm.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-14T08:10:13,870 copying build/lib/glycopeptidepy/enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-14T08:10:13,872 copying build/lib/glycopeptidepy/version.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-14T08:10:13,874 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-14T08:10:13,875 copying build/lib/glycopeptidepy/test/test_utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-14T08:10:13,876 copying build/lib/glycopeptidepy/test/test_fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-14T08:10:13,878 copying build/lib/glycopeptidepy/test/test_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-14T08:10:13,880 copying build/lib/glycopeptidepy/test/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-14T08:10:13,882 copying build/lib/glycopeptidepy/test/test_intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-14T08:10:13,884 copying build/lib/glycopeptidepy/test/test_residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-14T08:10:13,885 copying build/lib/glycopeptidepy/test/test_uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-14T08:10:13,887 copying build/lib/glycopeptidepy/test/test_sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-14T08:10:13,889 copying build/lib/glycopeptidepy/test/test_fragmentation_strategy.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-14T08:10:13,890 copying build/lib/glycopeptidepy/test/test_modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-14T08:10:13,892 copying build/lib/glycopeptidepy/test/test_fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-14T08:10:13,895 copying build/lib/glycopeptidepy/test/test_enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-14T08:10:13,896 copying build/lib/glycopeptidepy/test/common.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-14T08:10:13,898 copying build/lib/glycopeptidepy/test/test_algorithms.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-14T08:10:13,900 running install_egg_info 2023-09-14T08:10:13,912 Copying glycopeptidepy.egg-info to build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.10-py3.11.egg-info 2023-09-14T08:10:13,923 running install_scripts 2023-09-14T08:10:13,934 creating build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.10.dist-info/WHEEL 2023-09-14T08:10:13,936 creating '/tmp/pip-wheel-04o58vc7/.tmp-r_a0bhat/glycopeptidepy-0.0.10-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-14T08:10:13,939 adding 'glycopeptidepy/__init__.py' 2023-09-14T08:10:13,941 adding 'glycopeptidepy/algorithm.py' 2023-09-14T08:10:13,943 adding 'glycopeptidepy/enzyme.py' 2023-09-14T08:10:13,944 adding 'glycopeptidepy/version.py' 2023-09-14T08:10:13,946 adding 'glycopeptidepy/_c/__init__.py' 2023-09-14T08:10:13,990 adding 'glycopeptidepy/_c/algorithm.c' 2023-09-14T08:10:13,996 adding 'glycopeptidepy/_c/algorithm.pyx' 2023-09-14T08:10:14,032 adding 'glycopeptidepy/_c/collectiontools.c' 2023-09-14T08:10:14,037 adding 'glycopeptidepy/_c/collectiontools.pxd' 2023-09-14T08:10:14,038 adding 'glycopeptidepy/_c/collectiontools.pyx' 2023-09-14T08:10:14,039 adding 'glycopeptidepy/_c/compat.h' 2023-09-14T08:10:14,041 adding 'glycopeptidepy/_c/compat.pxd' 2023-09-14T08:10:14,042 adding 'glycopeptidepy/_c/count_table.c' 2023-09-14T08:10:14,043 adding 'glycopeptidepy/_c/count_table.pxd' 2023-09-14T08:10:14,046 adding 'glycopeptidepy/_c/count_table.pyx' 2023-09-14T08:10:14,047 adding 'glycopeptidepy/_c/cythonize.py' 2023-09-14T08:10:14,076 adding 'glycopeptidepy/_c/parser.c' 2023-09-14T08:10:14,080 adding 'glycopeptidepy/_c/parser.pxd' 2023-09-14T08:10:14,082 adding 'glycopeptidepy/_c/parser.pyx' 2023-09-14T08:10:14,084 adding 'glycopeptidepy/_c/structure/__init__.py' 2023-09-14T08:10:14,137 adding 'glycopeptidepy/_c/structure/base.c' 2023-09-14T08:10:14,145 adding 'glycopeptidepy/_c/structure/base.pxd' 2023-09-14T08:10:14,147 adding 'glycopeptidepy/_c/structure/base.pyx' 2023-09-14T08:10:14,166 adding 'glycopeptidepy/_c/structure/constants.c' 2023-09-14T08:10:14,169 adding 'glycopeptidepy/_c/structure/constants.pxd' 2023-09-14T08:10:14,170 adding 'glycopeptidepy/_c/structure/constants.pyx' 2023-09-14T08:10:14,252 adding 'glycopeptidepy/_c/structure/fragment.c' 2023-09-14T08:10:14,264 adding 'glycopeptidepy/_c/structure/fragment.pxd' 2023-09-14T08:10:14,267 adding 'glycopeptidepy/_c/structure/fragment.pyx' 2023-09-14T08:10:14,306 adding 'glycopeptidepy/_c/structure/glycan.c' 2023-09-14T08:10:14,313 adding 'glycopeptidepy/_c/structure/glycan.pxd' 2023-09-14T08:10:14,314 adding 'glycopeptidepy/_c/structure/glycan.pyx' 2023-09-14T08:10:14,367 adding 'glycopeptidepy/_c/structure/sequence_methods.c' 2023-09-14T08:10:14,375 adding 'glycopeptidepy/_c/structure/sequence_methods.pxd' 2023-09-14T08:10:14,378 adding 'glycopeptidepy/_c/structure/sequence_methods.pyx' 2023-09-14T08:10:14,379 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py' 2023-09-14T08:10:14,406 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.c' 2023-09-14T08:10:14,409 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd' 2023-09-14T08:10:14,411 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx' 2023-09-14T08:10:14,494 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c' 2023-09-14T08:10:14,506 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd' 2023-09-14T08:10:14,510 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx' 2023-09-14T08:10:14,584 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c' 2023-09-14T08:10:14,595 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd' 2023-09-14T08:10:14,598 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx' 2023-09-14T08:10:14,599 adding 'glycopeptidepy/_c/structure/modification/__init__.py' 2023-09-14T08:10:14,623 adding 'glycopeptidepy/_c/structure/modification/modification.c' 2023-09-14T08:10:14,627 adding 'glycopeptidepy/_c/structure/modification/modification.pxd' 2023-09-14T08:10:14,628 adding 'glycopeptidepy/_c/structure/modification/modification.pyx' 2023-09-14T08:10:14,665 adding 'glycopeptidepy/_c/structure/modification/rule.c' 2023-09-14T08:10:14,671 adding 'glycopeptidepy/_c/structure/modification/rule.pxd' 2023-09-14T08:10:14,672 adding 'glycopeptidepy/_c/structure/modification/rule.pyx' 2023-09-14T08:10:14,698 adding 'glycopeptidepy/_c/structure/modification/source.c' 2023-09-14T08:10:14,701 adding 'glycopeptidepy/_c/structure/modification/source.pxd' 2023-09-14T08:10:14,703 adding 'glycopeptidepy/_c/structure/modification/source.pyx' 2023-09-14T08:10:14,704 adding 'glycopeptidepy/_c/structure/modification/target.pyx' 2023-09-14T08:10:14,706 adding 'glycopeptidepy/io/__init__.py' 2023-09-14T08:10:14,707 adding 'glycopeptidepy/io/annotation.py' 2023-09-14T08:10:14,711 adding 'glycopeptidepy/io/fasta.py' 2023-09-14T08:10:14,713 adding 'glycopeptidepy/io/nextprot.py' 2023-09-14T08:10:14,715 adding 'glycopeptidepy/io/uniprot.py' 2023-09-14T08:10:14,717 adding 'glycopeptidepy/io/utils.py' 2023-09-14T08:10:14,718 adding 'glycopeptidepy/io/cv/__init__.py' 2023-09-14T08:10:14,720 adding 'glycopeptidepy/io/cv/peff.py' 2023-09-14T08:10:14,721 adding 'glycopeptidepy/io/cv/term.py' 2023-09-14T08:10:14,722 adding 'glycopeptidepy/io/cv/uniprot_ptm.py' 2023-09-14T08:10:14,724 adding 'glycopeptidepy/structure/__init__.py' 2023-09-14T08:10:14,725 adding 'glycopeptidepy/structure/base.py' 2023-09-14T08:10:14,726 adding 'glycopeptidepy/structure/composition.py' 2023-09-14T08:10:14,727 adding 'glycopeptidepy/structure/constants.py' 2023-09-14T08:10:14,730 adding 'glycopeptidepy/structure/fragment.py' 2023-09-14T08:10:14,732 adding 'glycopeptidepy/structure/glycan.py' 2023-09-14T08:10:14,734 adding 'glycopeptidepy/structure/parser.py' 2023-09-14T08:10:14,736 adding 'glycopeptidepy/structure/residue.py' 2023-09-14T08:10:14,737 adding 'glycopeptidepy/structure/sequence_composition.py' 2023-09-14T08:10:14,739 adding 'glycopeptidepy/structure/terminal_group.py' 2023-09-14T08:10:14,740 adding 'glycopeptidepy/structure/fragmentation_strategy/__init__.py' 2023-09-14T08:10:14,742 adding 'glycopeptidepy/structure/fragmentation_strategy/base.py' 2023-09-14T08:10:14,746 adding 'glycopeptidepy/structure/fragmentation_strategy/glycan.py' 2023-09-14T08:10:14,749 adding 'glycopeptidepy/structure/fragmentation_strategy/peptide.py' 2023-09-14T08:10:14,750 adding 'glycopeptidepy/structure/modification/__init__.py' 2023-09-14T08:10:14,752 adding 'glycopeptidepy/structure/modification/descriptors.py' 2023-09-14T08:10:14,754 adding 'glycopeptidepy/structure/modification/glycosylation.py' 2023-09-14T08:10:14,755 adding 'glycopeptidepy/structure/modification/modification.py' 2023-09-14T08:10:14,758 adding 'glycopeptidepy/structure/modification/rule.py' 2023-09-14T08:10:14,761 adding 'glycopeptidepy/structure/modification/source.py' 2023-09-14T08:10:14,762 adding 'glycopeptidepy/structure/modification/target.py' 2023-09-14T08:10:14,764 adding 'glycopeptidepy/structure/modification/utils.py' 2023-09-14T08:10:14,765 adding 'glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv' 2023-09-14T08:10:14,767 adding 'glycopeptidepy/structure/modification/data/__init__.py' 2023-09-14T08:10:14,768 adding 'glycopeptidepy/structure/modification/data/patch_unimod.py' 2023-09-14T08:10:14,832 adding 'glycopeptidepy/structure/modification/data/unimod.json' 2023-09-14T08:10:14,849 adding 'glycopeptidepy/structure/modification/data/unimod.py' 2023-09-14T08:10:14,851 adding 'glycopeptidepy/structure/sequence/__init__.py' 2023-09-14T08:10:14,853 adding 'glycopeptidepy/structure/sequence/base.py' 2023-09-14T08:10:14,854 adding 'glycopeptidepy/structure/sequence/glycosylated_sequence.py' 2023-09-14T08:10:14,856 adding 'glycopeptidepy/structure/sequence/implementation.py' 2023-09-14T08:10:14,858 adding 'glycopeptidepy/structure/sequence/mutable_sequence.py' 2023-09-14T08:10:14,859 adding 'glycopeptidepy/test/__init__.py' 2023-09-14T08:10:14,860 adding 'glycopeptidepy/test/common.py' 2023-09-14T08:10:14,862 adding 'glycopeptidepy/test/test_algorithms.py' 2023-09-14T08:10:14,863 adding 'glycopeptidepy/test/test_enzyme.py' 2023-09-14T08:10:14,865 adding 'glycopeptidepy/test/test_fasta.py' 2023-09-14T08:10:14,866 adding 'glycopeptidepy/test/test_fragment.py' 2023-09-14T08:10:14,867 adding 'glycopeptidepy/test/test_fragmentation_strategy.py' 2023-09-14T08:10:14,869 adding 'glycopeptidepy/test/test_intervals.py' 2023-09-14T08:10:14,870 adding 'glycopeptidepy/test/test_modification.py' 2023-09-14T08:10:14,871 adding 'glycopeptidepy/test/test_residue.py' 2023-09-14T08:10:14,873 adding 'glycopeptidepy/test/test_sequence.py' 2023-09-14T08:10:14,874 adding 'glycopeptidepy/test/test_sequence_composition.py' 2023-09-14T08:10:14,876 adding 'glycopeptidepy/test/test_uniprot.py' 2023-09-14T08:10:14,877 adding 'glycopeptidepy/test/test_utils.py' 2023-09-14T08:10:14,878 adding 'glycopeptidepy/utils/__init__.py' 2023-09-14T08:10:14,880 adding 'glycopeptidepy/utils/collectiontools.py' 2023-09-14T08:10:14,882 adding 'glycopeptidepy/utils/intervals.py' 2023-09-14T08:10:14,883 adding 'glycopeptidepy/utils/iterators.py' 2023-09-14T08:10:14,885 adding 'glycopeptidepy/utils/memoize.py' 2023-09-14T08:10:14,886 adding 'glycopeptidepy/utils/sequence_tree.py' 2023-09-14T08:10:14,888 adding 'glycopeptidepy-0.0.10.dist-info/METADATA' 2023-09-14T08:10:14,889 adding 'glycopeptidepy-0.0.10.dist-info/WHEEL' 2023-09-14T08:10:14,889 adding 'glycopeptidepy-0.0.10.dist-info/top_level.txt' 2023-09-14T08:10:14,891 adding 'glycopeptidepy-0.0.10.dist-info/RECORD' 2023-09-14T08:10:14,917 removing build/bdist.linux-armv7l/wheel 2023-09-14T08:10:14,951 *************************************************************************** 2023-09-14T08:10:14,951 WARNING: The C extension could not be compiled, speedups are not enabled. 2023-09-14T08:10:14,952 Plain-Python build succeeded. 2023-09-14T08:10:14,953 *************************************************************************** 2023-09-14T08:10:15,223 Building wheel for glycopeptidepy (pyproject.toml): finished with status 'done' 2023-09-14T08:10:15,255 Created wheel for glycopeptidepy: filename=glycopeptidepy-0.0.10-py3-none-any.whl size=1323900 sha256=fe636940882d5a37a7ebb7a6ec9425c90f78d71e6d9aa4802a4a88250ca450c5 2023-09-14T08:10:15,257 Stored in directory: /tmp/pip-ephem-wheel-cache-xuhr4yae/wheels/fc/0c/4e/844a62bb3e4a13c3d880f64561a590868e4cd60d655e996fc8 2023-09-14T08:10:15,269 Successfully built glycopeptidepy 2023-09-14T08:10:15,305 Removed build tracker: '/tmp/pip-build-tracker-yxn_h4tl'