2023-09-14T13:14:54,839 Created temporary directory: /tmp/pip-build-tracker-o070yxso 2023-09-14T13:14:54,840 Initialized build tracking at /tmp/pip-build-tracker-o070yxso 2023-09-14T13:14:54,841 Created build tracker: /tmp/pip-build-tracker-o070yxso 2023-09-14T13:14:54,841 Entered build tracker: /tmp/pip-build-tracker-o070yxso 2023-09-14T13:14:54,842 Created temporary directory: /tmp/pip-wheel-whzlymjv 2023-09-14T13:14:54,845 Created temporary directory: /tmp/pip-ephem-wheel-cache-k1jba7nc 2023-09-14T13:14:54,866 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-14T13:14:54,870 2 location(s) to search for versions of parmed: 2023-09-14T13:14:54,870 * https://pypi.org/simple/parmed/ 2023-09-14T13:14:54,870 * https://www.piwheels.org/simple/parmed/ 2023-09-14T13:14:54,871 Fetching project page and analyzing links: https://pypi.org/simple/parmed/ 2023-09-14T13:14:54,872 Getting page https://pypi.org/simple/parmed/ 2023-09-14T13:14:54,873 Found index url https://pypi.org/simple/ 2023-09-14T13:14:55,106 Fetched page https://pypi.org/simple/parmed/ as application/vnd.pypi.simple.v1+json 2023-09-14T13:14:55,110 Found link https://files.pythonhosted.org/packages/dd/24/a0d4de0b0ff344795b09fdfcbc0bd3e7207d1554bf5fe20736a78338610d/ParmEd-2.1.10.tar.gz (from https://pypi.org/simple/parmed/), version: 2.1.10 2023-09-14T13:14:55,111 Found link https://files.pythonhosted.org/packages/66/3c/f117d1069a26fd6a8153f3061827ea8b47d4ee99beb43850a93c009d0f38/ParmEd-2.5.0.tar.gz (from https://pypi.org/simple/parmed/), version: 2.5.0 2023-09-14T13:14:55,111 Found link https://files.pythonhosted.org/packages/ee/c3/d59a85593e3bd0ad611567b131211b3d4966f49b9d1ac8ea94eea3c2e78c/ParmEd-2.5.1.tar.gz (from https://pypi.org/simple/parmed/), version: 2.5.1 2023-09-14T13:14:55,112 Found link https://files.pythonhosted.org/packages/61/3b/78c0f325c0e96bbb5caef585ddddf304bbddc91f60f2fd1c4e2de0f49fde/ParmEd-2.7.2.tar.gz (from https://pypi.org/simple/parmed/), version: 2.7.2 2023-09-14T13:14:55,112 Found link https://files.pythonhosted.org/packages/58/1a/b76c7180457602ecc6d2953b1d60e1930217038561e91eedc172eba74b61/ParmEd-2.7.3.tar.gz (from https://pypi.org/simple/parmed/), version: 2.7.3 2023-09-14T13:14:55,113 Found link https://files.pythonhosted.org/packages/6a/93/5e9fee0634f476695b405bf595577ee1e817939b5d6bf58bb55499e57cb9/ParmEd-3.0.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.0 2023-09-14T13:14:55,114 Found link https://files.pythonhosted.org/packages/8a/7a/ae87eed78118f5622c278c94560126bd7d2b849417b0e28c83b1178b2ab6/ParmEd-3.0.1.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.1 2023-09-14T13:14:55,115 Found link https://files.pythonhosted.org/packages/e0/dc/3916a326be85412af07681e151a01bfa3f2d884b97c25ff549b4a3e836a8/ParmEd-3.0.3.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.3 2023-09-14T13:14:55,116 Found link https://files.pythonhosted.org/packages/8b/3e/4f54833855ca64ad5d9667285125c7ce9ae026cb5cc6b7c3f0a643178354/ParmEd-3.1.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.1.0 2023-09-14T13:14:55,116 Found link https://files.pythonhosted.org/packages/ba/a2/d6a9135efd6b1f7d70b79019a2fb2cd1472fceed979e66deaba64e2b641c/ParmEd-3.2.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.2.0 2023-09-14T13:14:55,117 Found link https://files.pythonhosted.org/packages/24/d1/dafba1bdb2f395de37efa51355e093843bb05e7a6dfb5373403ff9af2575/ParmEd-3.4.2.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.2 2023-09-14T13:14:55,118 Found link https://files.pythonhosted.org/packages/56/75/422fa404b42999d6346545b63542d8c1e30f1cc31e5fc884bb7c9a3995c8/ParmEd-3.4.3.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.3 2023-09-14T13:14:55,119 Found link https://files.pythonhosted.org/packages/74/f2/6f19ed34378c32ac1b5304f58bc6e6086e14a725af589c7b3fa35deaff07/ParmEd-3.4.4.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.4 2023-09-14T13:14:55,120 Found link https://files.pythonhosted.org/packages/6b/b6/040189f8ecb7fc2233d408b2c575ca0a1383c2fe6945c3462015c156bae5/ParmEd-4.0.0.tar.gz (from https://pypi.org/simple/parmed/), version: 4.0.0 2023-09-14T13:14:55,121 Found link https://files.pythonhosted.org/packages/dc/85/01007d38fe0945398c5e0ec7c7ce2d9cc433289bf05e32393c8e48e71cd4/ParmEd-4.1.0.tar.gz (from https://pypi.org/simple/parmed/) (requires-python:>=3.8), version: 4.1.0 2023-09-14T13:14:55,122 Fetching project page and analyzing links: https://www.piwheels.org/simple/parmed/ 2023-09-14T13:14:55,122 Getting page https://www.piwheels.org/simple/parmed/ 2023-09-14T13:14:55,124 Found index url https://www.piwheels.org/simple/ 2023-09-14T13:14:55,380 Fetched page https://www.piwheels.org/simple/parmed/ as text/html 2023-09-14T13:14:55,407 Skipping link: No binaries permitted for parmed: 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https://www.piwheels.org/simple/parmed/ParmEd-2.5.0-cp35-cp35m-linux_armv7l.whl#sha256=5865d3138f2558b816d9dca1ee2b3f7fdab0f8860a37767eeebde3544c3ffab0 (from https://www.piwheels.org/simple/parmed/) 2023-09-14T13:14:55,468 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.5.0-cp37-cp37m-linux_armv7l.whl#sha256=8cd5f3d69097b934b7ee66a577dbed5393d2a6998be794bc350fedb675960e64 (from https://www.piwheels.org/simple/parmed/) 2023-09-14T13:14:55,469 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.5.0-cp37-cp37m-linux_armv6l.whl#sha256=8cd5f3d69097b934b7ee66a577dbed5393d2a6998be794bc350fedb675960e64 (from https://www.piwheels.org/simple/parmed/) 2023-09-14T13:14:55,469 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp39-cp39-linux_armv7l.whl#sha256=14be7d2a461926bbae33d82c7180c8f99c41c7c0ed0f93289ce6eb2a3c30e4e2 (from https://www.piwheels.org/simple/parmed/) 2023-09-14T13:14:55,470 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp39-cp39-linux_armv6l.whl#sha256=14be7d2a461926bbae33d82c7180c8f99c41c7c0ed0f93289ce6eb2a3c30e4e2 (from https://www.piwheels.org/simple/parmed/) 2023-09-14T13:14:55,470 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp35-cp35m-linux_armv6l.whl#sha256=e0534a25b390e9bc78d69f0efe9459ee04206f616c997a738a2fe47e4b32b697 (from https://www.piwheels.org/simple/parmed/) 2023-09-14T13:14:55,471 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp35-cp35m-linux_armv7l.whl#sha256=e0534a25b390e9bc78d69f0efe9459ee04206f616c997a738a2fe47e4b32b697 (from https://www.piwheels.org/simple/parmed/) 2023-09-14T13:14:55,471 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp34-cp34m-linux_armv6l.whl#sha256=6b0dd3f2441783503ee0e302bc79578fafea899959437e1f410325427e4e27db (from https://www.piwheels.org/simple/parmed/) 2023-09-14T13:14:55,471 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp34-cp34m-linux_armv7l.whl#sha256=6b0dd3f2441783503ee0e302bc79578fafea899959437e1f410325427e4e27db (from https://www.piwheels.org/simple/parmed/) 2023-09-14T13:14:55,472 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp37-cp37m-linux_armv7l.whl#sha256=1854e07427c63691c54378dd17a4aa7885d24280196bc0b895bc45187d1161be (from https://www.piwheels.org/simple/parmed/) 2023-09-14T13:14:55,473 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp37-cp37m-linux_armv6l.whl#sha256=1854e07427c63691c54378dd17a4aa7885d24280196bc0b895bc45187d1161be (from https://www.piwheels.org/simple/parmed/) 2023-09-14T13:14:55,473 Skipping link: not a file: https://www.piwheels.org/simple/parmed/ 2023-09-14T13:14:55,474 Skipping link: not a file: https://pypi.org/simple/parmed/ 2023-09-14T13:14:55,494 Given no hashes to check 1 links for project 'parmed': discarding no candidates 2023-09-14T13:14:55,512 Collecting parmed==3.4.2 2023-09-14T13:14:55,514 Created temporary directory: /tmp/pip-unpack-33anokj6 2023-09-14T13:14:55,737 Downloading ParmEd-3.4.2.tar.gz (1.9 MB) 2023-09-14T13:14:56,777 Added parmed==3.4.2 from https://files.pythonhosted.org/packages/24/d1/dafba1bdb2f395de37efa51355e093843bb05e7a6dfb5373403ff9af2575/ParmEd-3.4.2.tar.gz to build tracker '/tmp/pip-build-tracker-o070yxso' 2023-09-14T13:14:56,779 Running setup.py (path:/tmp/pip-wheel-whzlymjv/parmed_fdb1c4895584481a931c3314abd4a2fb/setup.py) egg_info for package parmed 2023-09-14T13:14:56,779 Created temporary directory: /tmp/pip-pip-egg-info-fy4h5q1q 2023-09-14T13:14:56,780 Preparing metadata (setup.py): started 2023-09-14T13:14:56,781 Running command python setup.py egg_info 2023-09-14T13:14:57,876 running egg_info 2023-09-14T13:14:57,877 creating /tmp/pip-pip-egg-info-fy4h5q1q/ParmEd.egg-info 2023-09-14T13:14:57,901 writing /tmp/pip-pip-egg-info-fy4h5q1q/ParmEd.egg-info/PKG-INFO 2023-09-14T13:14:57,904 writing dependency_links to /tmp/pip-pip-egg-info-fy4h5q1q/ParmEd.egg-info/dependency_links.txt 2023-09-14T13:14:57,906 writing entry points to /tmp/pip-pip-egg-info-fy4h5q1q/ParmEd.egg-info/entry_points.txt 2023-09-14T13:14:57,908 writing top-level names to /tmp/pip-pip-egg-info-fy4h5q1q/ParmEd.egg-info/top_level.txt 2023-09-14T13:14:57,909 writing manifest file '/tmp/pip-pip-egg-info-fy4h5q1q/ParmEd.egg-info/SOURCES.txt' 2023-09-14T13:14:57,978 dependency src/CompatabilityMacros.h won't be automatically included in the manifest: the path doesn't exist 2023-09-14T13:14:58,002 reading manifest file '/tmp/pip-pip-egg-info-fy4h5q1q/ParmEd.egg-info/SOURCES.txt' 2023-09-14T13:14:58,008 writing manifest file '/tmp/pip-pip-egg-info-fy4h5q1q/ParmEd.egg-info/SOURCES.txt' 2023-09-14T13:14:58,118 Preparing metadata (setup.py): finished with status 'done' 2023-09-14T13:14:58,121 Source in /tmp/pip-wheel-whzlymjv/parmed_fdb1c4895584481a931c3314abd4a2fb has version 3.4.2, which satisfies requirement parmed==3.4.2 from https://files.pythonhosted.org/packages/24/d1/dafba1bdb2f395de37efa51355e093843bb05e7a6dfb5373403ff9af2575/ParmEd-3.4.2.tar.gz 2023-09-14T13:14:58,122 Removed parmed==3.4.2 from https://files.pythonhosted.org/packages/24/d1/dafba1bdb2f395de37efa51355e093843bb05e7a6dfb5373403ff9af2575/ParmEd-3.4.2.tar.gz from build tracker '/tmp/pip-build-tracker-o070yxso' 2023-09-14T13:14:58,126 Created temporary directory: /tmp/pip-unpack-jd6_7x1g 2023-09-14T13:14:58,127 Created temporary directory: /tmp/pip-unpack-rvitickh 2023-09-14T13:14:58,129 Building wheels for collected packages: parmed 2023-09-14T13:14:58,133 Created temporary directory: /tmp/pip-wheel-ts4fz4ug 2023-09-14T13:14:58,134 Building wheel for parmed (setup.py): started 2023-09-14T13:14:58,135 Destination directory: /tmp/pip-wheel-ts4fz4ug 2023-09-14T13:14:58,135 Running command python setup.py bdist_wheel 2023-09-14T13:14:59,233 running bdist_wheel 2023-09-14T13:14:59,326 running build 2023-09-14T13:14:59,326 running build_py 2023-09-14T13:14:59,330 creating build 2023-09-14T13:14:59,331 creating build/lib.linux-armv7l-cpython-311 2023-09-14T13:14:59,332 creating build/lib.linux-armv7l-cpython-311/parmed 2023-09-14T13:14:59,333 copying parmed/_version.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-14T13:14:59,335 copying parmed/residue.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-14T13:14:59,337 copying parmed/scripts.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-14T13:14:59,339 copying parmed/periodic_table.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-14T13:14:59,341 copying parmed/constants.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-14T13:14:59,343 copying parmed/vec3.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-14T13:14:59,345 copying parmed/structure.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-14T13:14:59,349 copying parmed/topologyobjects.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-14T13:14:59,354 copying parmed/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-14T13:14:59,356 copying parmed/symmetry.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-14T13:14:59,357 copying parmed/geometry.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-14T13:14:59,359 copying parmed/exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-14T13:14:59,361 copying parmed/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-14T13:14:59,364 creating build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-14T13:14:59,365 copying parmed/amber/titratable_residues.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-14T13:14:59,368 copying parmed/amber/_tinkerparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-14T13:14:59,371 copying parmed/amber/_chamberparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-14T13:14:59,374 copying parmed/amber/asciicrd.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-14T13:14:59,377 copying parmed/amber/_amberparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-14T13:14:59,380 copying parmed/amber/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-14T13:14:59,382 copying parmed/amber/mask.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-14T13:14:59,384 copying parmed/amber/readparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-14T13:14:59,385 copying parmed/amber/amberformat.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-14T13:14:59,388 copying parmed/amber/offlib.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-14T13:14:59,390 copying parmed/amber/netcdffiles.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-14T13:14:59,392 copying parmed/amber/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-14T13:14:59,395 creating build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-14T13:14:59,396 copying parmed/modeller/residue.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-14T13:14:59,399 copying parmed/modeller/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-14T13:14:59,400 copying parmed/modeller/standardtemplates.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-14T13:14:59,402 creating build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-14T13:14:59,403 copying parmed/tinker/tinkerfiles.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-14T13:14:59,405 copying parmed/tinker/topologyobjects.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-14T13:14:59,407 copying parmed/tinker/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-14T13:14:59,409 copying parmed/tinker/system.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-14T13:14:59,412 copying parmed/tinker/parameterfile.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-14T13:14:59,415 creating build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-14T13:14:59,416 copying parmed/unit/mymatrix.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-14T13:14:59,418 copying parmed/unit/constants.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-14T13:14:59,420 copying parmed/unit/unit_math.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-14T13:14:59,422 copying parmed/unit/prefix.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-14T13:14:59,424 copying parmed/unit/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-14T13:14:59,426 copying parmed/unit/basedimension.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-14T13:14:59,428 copying parmed/unit/unit_operators.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-14T13:14:59,430 copying parmed/unit/standard_dimensions.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-14T13:14:59,431 copying parmed/unit/quantity.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-14T13:14:59,434 copying parmed/unit/unit_definitions.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-14T13:14:59,436 copying parmed/unit/unit.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-14T13:14:59,439 copying parmed/unit/baseunit.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-14T13:14:59,442 creating build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-14T13:14:59,443 copying parmed/amber/mdin/ewald.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-14T13:14:59,445 copying parmed/amber/mdin/cntrl.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-14T13:14:59,447 copying parmed/amber/mdin/qmmm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-14T13:14:59,448 copying parmed/amber/mdin/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-14T13:14:59,450 copying parmed/amber/mdin/mdin.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-14T13:14:59,452 copying parmed/amber/mdin/pb.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-14T13:14:59,455 creating build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-14T13:14:59,456 copying parmed/charmm/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-14T13:14:59,457 copying parmed/charmm/psf.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-14T13:14:59,460 copying parmed/charmm/charmmcrds.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-14T13:14:59,462 copying parmed/charmm/_charmmfile.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-14T13:14:59,464 copying parmed/charmm/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-14T13:14:59,467 creating build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-14T13:14:59,468 creating build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-14T13:14:59,469 copying parmed/formats/pdbx/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-14T13:14:59,471 copying parmed/formats/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-14T13:14:59,473 copying parmed/formats/pdbx/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-14T13:14:59,475 copying parmed/formats/pdbx/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-14T13:14:59,477 creating build/lib.linux-armv7l-cpython-311/parmed/rosetta 2023-09-14T13:14:59,478 copying parmed/rosetta/pose.py -> build/lib.linux-armv7l-cpython-311/parmed/rosetta 2023-09-14T13:14:59,480 copying parmed/rosetta/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/rosetta 2023-09-14T13:14:59,482 creating build/lib.linux-armv7l-cpython-311/parmed/rdkit 2023-09-14T13:14:59,482 copying parmed/rdkit/rdkit.py -> build/lib.linux-armv7l-cpython-311/parmed/rdkit 2023-09-14T13:14:59,484 copying parmed/rdkit/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/rdkit 2023-09-14T13:14:59,486 copying parmed/formats/registry.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-14T13:14:59,488 copying parmed/formats/sdf.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-14T13:14:59,490 copying parmed/formats/pdb.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-14T13:14:59,493 copying parmed/formats/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-14T13:14:59,495 copying parmed/formats/psf.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-14T13:14:59,497 copying parmed/formats/mol2.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-14T13:14:59,499 copying parmed/formats/pqr.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-14T13:14:59,502 creating build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-14T13:14:59,503 creating build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-14T13:14:59,504 copying parmed/utils/fortranformat/config.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-14T13:14:59,506 copying parmed/utils/fortranformat/_misc.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-14T13:14:59,507 copying parmed/utils/fortranformat/_lexer.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-14T13:14:59,509 copying parmed/utils/fortranformat/_parser.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-14T13:14:59,512 copying parmed/utils/fortranformat/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-14T13:14:59,513 copying parmed/utils/fortranformat/FortranRecordWriter.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-14T13:14:59,515 copying parmed/utils/fortranformat/_exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-14T13:14:59,516 copying parmed/utils/fortranformat/_output.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-14T13:14:59,519 copying parmed/utils/fortranformat/_input.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-14T13:14:59,521 copying parmed/utils/fortranformat/FortranRecordReader.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-14T13:14:59,523 copying parmed/utils/fortranformat/_edit_descriptors.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-14T13:14:59,525 creating build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-14T13:14:59,526 copying parmed/openmm/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-14T13:14:59,528 copying parmed/openmm/reporters.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-14T13:14:59,530 copying parmed/openmm/utils.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-14T13:14:59,532 copying parmed/openmm/topsystem.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-14T13:14:59,534 copying parmed/openmm/xmlfile.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-14T13:14:59,536 copying parmed/openmm/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-14T13:14:59,539 copying parmed/utils/pandautils.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-14T13:14:59,541 copying parmed/utils/timer.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-14T13:14:59,543 copying parmed/utils/decorators.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-14T13:14:59,545 copying parmed/utils/netcdf.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-14T13:14:59,547 copying parmed/utils/six.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-14T13:14:59,549 copying parmed/utils/io.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-14T13:14:59,551 copying parmed/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-14T13:14:59,553 copying parmed/utils/pairlist.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-14T13:14:59,556 creating build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-14T13:14:59,556 copying parmed/gromacs/gromacstop.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-14T13:14:59,560 copying parmed/gromacs/_gromacsfile.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-14T13:14:59,562 copying parmed/gromacs/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-14T13:14:59,563 copying parmed/gromacs/_cpp.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-14T13:14:59,565 copying parmed/gromacs/gromacsgro.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-14T13:14:59,568 creating build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-14T13:14:59,569 copying parmed/tools/parmed_cmd.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-14T13:14:59,572 copying parmed/tools/parmlist.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-14T13:14:59,573 copying parmed/tools/logos.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-14T13:14:59,575 copying parmed/tools/changeradii.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-14T13:14:59,577 copying parmed/tools/addljtype.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-14T13:14:59,579 copying parmed/tools/coarsegrain.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-14T13:14:59,581 copying parmed/tools/actions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-14T13:14:59,586 copying parmed/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-14T13:14:59,588 copying parmed/tools/argumentlist.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-14T13:14:59,590 copying parmed/tools/add1264.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-14T13:14:59,592 copying parmed/tools/checkvalidity.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-14T13:14:59,595 copying parmed/tools/exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-14T13:14:59,597 creating build/lib.linux-armv7l-cpython-311/parmed/namd 2023-09-14T13:14:59,598 copying parmed/namd/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/namd 2023-09-14T13:14:59,600 copying parmed/namd/namdbinfiles.py -> build/lib.linux-armv7l-cpython-311/parmed/namd 2023-09-14T13:14:59,602 creating build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-14T13:14:59,603 copying parmed/tools/gui/guifiletools.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-14T13:14:59,605 copying parmed/tools/gui/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-14T13:14:59,606 copying parmed/tools/gui/_guiwidgets.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-14T13:14:59,608 copying parmed/tools/gui/guitools.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-14T13:14:59,610 copying parmed/tools/gui/guiactions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-14T13:14:59,612 copying parmed/tools/gui/_guiactions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-14T13:14:59,615 creating build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-14T13:14:59,616 copying parmed/tools/simulations/sanderapi.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-14T13:14:59,618 copying parmed/tools/simulations/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-14T13:14:59,620 copying parmed/tools/simulations/openmm.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-14T13:14:59,624 creating build/lib.linux-armv7l-cpython-311/parmed/modeller/data 2023-09-14T13:14:59,625 copying parmed/modeller/data/standard_residues.lib -> build/lib.linux-armv7l-cpython-311/parmed/modeller/data 2023-09-14T13:14:59,638 UPDATING build/lib.linux-armv7l-cpython-311/parmed/_version.py 2023-09-14T13:14:59,639 set build/lib.linux-armv7l-cpython-311/parmed/_version.py to '3.4.2' 2023-09-14T13:14:59,640 running build_ext 2023-09-14T13:15:00,145 building 'parmed.amber._rdparm' extension 2023-09-14T13:15:00,146 creating build/temp.linux-armv7l-cpython-311 2023-09-14T13:15:00,146 creating build/temp.linux-armv7l-cpython-311/src 2023-09-14T13:15:00,147 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-whzlymjv/parmed_fdb1c4895584481a931c3314abd4a2fb/src -I/usr/include/python3.11 -c src/_rdparm.cpp -o build/temp.linux-armv7l-cpython-311/src/_rdparm.o 2023-09-14T13:15:05,801 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-whzlymjv/parmed_fdb1c4895584481a931c3314abd4a2fb/src -I/usr/include/python3.11 -c src/readparm.cpp -o build/temp.linux-armv7l-cpython-311/src/readparm.o 2023-09-14T13:15:08,971 In file included from /usr/include/c++/12/vector:70, 2023-09-14T13:15:08,972 from src/readparm.h:8, 2023-09-14T13:15:08,973 from src/readparm.cpp:10: 2023-09-14T13:15:08,973 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ParmData&}; _Tp = ParmData; _Alloc = std::allocator]’: 2023-09-14T13:15:08,974 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-14T13:15:08,975 439 | vector<_Tp, _Alloc>:: 2023-09-14T13:15:08,976 | ^~~~~~~~~~~~~~~~~~~ 2023-09-14T13:15:10,062 src/readparm.cpp: In function ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’: 2023-09-14T13:15:10,063 src/readparm.cpp:143:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound 8 equals destination size [-Wstringop-truncation] 2023-09-14T13:15:10,064 143 | strncpy(d.c, word.c_str(), MAX_HOLLERITH_SIZE); 2023-09-14T13:15:10,065 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-14T13:15:10,191 In file included from /usr/include/c++/12/vector:64: 2023-09-14T13:15:10,192 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator]’, 2023-09-14T13:15:10,193 inlined from ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:128:48: 2023-09-14T13:15:10,194 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-14T13:15:10,194 1287 | _M_realloc_insert(end(), __x); 2023-09-14T13:15:10,195 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-14T13:15:10,196 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator]’, 2023-09-14T13:15:10,197 inlined from ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:135:48: 2023-09-14T13:15:10,198 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-14T13:15:10,199 1287 | _M_realloc_insert(end(), __x); 2023-09-14T13:15:10,199 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-14T13:15:10,202 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator]’, 2023-09-14T13:15:10,202 inlined from ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:144:48: 2023-09-14T13:15:10,203 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-14T13:15:10,204 1287 | _M_realloc_insert(end(), __x); 2023-09-14T13:15:10,204 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-14T13:15:11,961 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/_rdparm.o build/temp.linux-armv7l-cpython-311/src/readparm.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so 2023-09-14T13:15:12,277 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-14T13:15:12,278 !! 2023-09-14T13:15:12,279 ******************************************************************************** 2023-09-14T13:15:12,280 Please avoid running ``setup.py`` directly. 2023-09-14T13:15:12,280 Instead, use pypa/build, pypa/installer or other 2023-09-14T13:15:12,281 standards-based tools. 2023-09-14T13:15:12,282 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-14T13:15:12,283 ******************************************************************************** 2023-09-14T13:15:12,284 !! 2023-09-14T13:15:12,285 self.initialize_options() 2023-09-14T13:15:12,310 installing to build/bdist.linux-armv7l/wheel 2023-09-14T13:15:12,311 running install 2023-09-14T13:15:12,335 running install_lib 2023-09-14T13:15:12,359 creating build/bdist.linux-armv7l 2023-09-14T13:15:12,360 creating build/bdist.linux-armv7l/wheel 2023-09-14T13:15:12,363 creating build/bdist.linux-armv7l/wheel/parmed 2023-09-14T13:15:12,364 creating build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-14T13:15:12,365 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-14T13:15:12,367 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/psf.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-14T13:15:12,370 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/charmmcrds.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-14T13:15:12,373 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/_charmmfile.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-14T13:15:12,376 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-14T13:15:12,381 copying build/lib.linux-armv7l-cpython-311/parmed/_version.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-14T13:15:12,384 creating build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-14T13:15:12,385 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/gromacstop.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-14T13:15:12,390 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/_gromacsfile.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-14T13:15:12,392 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-14T13:15:12,395 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/_cpp.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-14T13:15:12,397 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/gromacsgro.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-14T13:15:12,400 copying build/lib.linux-armv7l-cpython-311/parmed/residue.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-14T13:15:12,403 copying build/lib.linux-armv7l-cpython-311/parmed/scripts.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-14T13:15:12,406 copying build/lib.linux-armv7l-cpython-311/parmed/periodic_table.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-14T13:15:12,409 copying build/lib.linux-armv7l-cpython-311/parmed/constants.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-14T13:15:12,411 copying build/lib.linux-armv7l-cpython-311/parmed/vec3.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-14T13:15:12,413 copying build/lib.linux-armv7l-cpython-311/parmed/structure.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-14T13:15:12,421 creating build/bdist.linux-armv7l/wheel/parmed/rosetta 2023-09-14T13:15:12,423 copying build/lib.linux-armv7l-cpython-311/parmed/rosetta/pose.py -> build/bdist.linux-armv7l/wheel/parmed/rosetta 2023-09-14T13:15:12,426 copying build/lib.linux-armv7l-cpython-311/parmed/rosetta/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/rosetta 2023-09-14T13:15:12,429 copying build/lib.linux-armv7l-cpython-311/parmed/topologyobjects.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-14T13:15:12,436 creating build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-14T13:15:12,437 copying build/lib.linux-armv7l-cpython-311/parmed/utils/pandautils.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-14T13:15:12,441 copying build/lib.linux-armv7l-cpython-311/parmed/utils/timer.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-14T13:15:12,444 copying build/lib.linux-armv7l-cpython-311/parmed/utils/decorators.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-14T13:15:12,449 copying build/lib.linux-armv7l-cpython-311/parmed/utils/netcdf.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-14T13:15:12,460 copying build/lib.linux-armv7l-cpython-311/parmed/utils/six.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-14T13:15:12,479 copying build/lib.linux-armv7l-cpython-311/parmed/utils/io.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-14T13:15:12,495 copying build/lib.linux-armv7l-cpython-311/parmed/utils/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-14T13:15:12,510 copying build/lib.linux-armv7l-cpython-311/parmed/utils/pairlist.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-14T13:15:12,525 creating build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-14T13:15:12,530 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/config.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-14T13:15:12,543 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_misc.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-14T13:15:12,554 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_lexer.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-14T13:15:12,567 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_parser.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-14T13:15:12,578 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-14T13:15:12,580 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/FortranRecordWriter.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-14T13:15:12,583 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_exceptions.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-14T13:15:12,585 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_output.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-14T13:15:12,590 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_input.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-14T13:15:12,597 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/FortranRecordReader.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-14T13:15:12,603 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_edit_descriptors.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-14T13:15:12,611 creating build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-14T13:15:12,612 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-14T13:15:12,615 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/reporters.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-14T13:15:12,621 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/utils.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-14T13:15:12,629 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/topsystem.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-14T13:15:12,637 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/xmlfile.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-14T13:15:12,646 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-14T13:15:12,659 copying build/lib.linux-armv7l-cpython-311/parmed/__init__.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-14T13:15:12,670 copying build/lib.linux-armv7l-cpython-311/parmed/symmetry.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-14T13:15:12,682 creating build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-14T13:15:12,687 copying build/lib.linux-armv7l-cpython-311/parmed/unit/mymatrix.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-14T13:15:12,701 copying build/lib.linux-armv7l-cpython-311/parmed/unit/constants.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-14T13:15:12,709 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_math.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-14T13:15:12,717 copying build/lib.linux-armv7l-cpython-311/parmed/unit/prefix.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-14T13:15:12,726 copying build/lib.linux-armv7l-cpython-311/parmed/unit/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-14T13:15:12,734 copying build/lib.linux-armv7l-cpython-311/parmed/unit/basedimension.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-14T13:15:12,743 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_operators.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-14T13:15:12,750 copying build/lib.linux-armv7l-cpython-311/parmed/unit/standard_dimensions.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-14T13:15:12,754 copying build/lib.linux-armv7l-cpython-311/parmed/unit/quantity.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-14T13:15:12,760 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_definitions.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-14T13:15:12,763 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-14T13:15:12,766 copying build/lib.linux-armv7l-cpython-311/parmed/unit/baseunit.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-14T13:15:12,769 creating build/bdist.linux-armv7l/wheel/parmed/namd 2023-09-14T13:15:12,770 copying build/lib.linux-armv7l-cpython-311/parmed/namd/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/namd 2023-09-14T13:15:12,773 copying build/lib.linux-armv7l-cpython-311/parmed/namd/namdbinfiles.py -> build/bdist.linux-armv7l/wheel/parmed/namd 2023-09-14T13:15:12,775 copying build/lib.linux-armv7l-cpython-311/parmed/geometry.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-14T13:15:12,781 creating build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-14T13:15:12,782 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/residue.py -> build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-14T13:15:12,789 creating build/bdist.linux-armv7l/wheel/parmed/modeller/data 2023-09-14T13:15:12,790 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/data/standard_residues.lib -> build/bdist.linux-armv7l/wheel/parmed/modeller/data 2023-09-14T13:15:12,801 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-14T13:15:12,805 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/standardtemplates.py -> build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-14T13:15:12,808 creating build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-14T13:15:12,810 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/tinkerfiles.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-14T13:15:12,813 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/topologyobjects.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-14T13:15:12,817 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-14T13:15:12,819 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/system.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-14T13:15:12,823 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/parameterfile.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-14T13:15:12,827 creating build/bdist.linux-armv7l/wheel/parmed/rdkit 2023-09-14T13:15:12,828 copying build/lib.linux-armv7l-cpython-311/parmed/rdkit/rdkit.py -> build/bdist.linux-armv7l/wheel/parmed/rdkit 2023-09-14T13:15:12,831 copying build/lib.linux-armv7l-cpython-311/parmed/rdkit/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/rdkit 2023-09-14T13:15:12,834 creating build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-14T13:15:12,836 copying build/lib.linux-armv7l-cpython-311/parmed/amber/titratable_residues.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-14T13:15:12,841 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_tinkerparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-14T13:15:12,846 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_chamberparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-14T13:15:12,850 copying build/lib.linux-armv7l-cpython-311/parmed/amber/asciicrd.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-14T13:15:12,854 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_amberparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-14T13:15:12,861 copying build/lib.linux-armv7l-cpython-311/parmed/amber/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-14T13:15:12,864 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mask.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-14T13:15:12,867 copying build/lib.linux-armv7l-cpython-311/parmed/amber/readparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-14T13:15:12,870 copying build/lib.linux-armv7l-cpython-311/parmed/amber/amberformat.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-14T13:15:12,874 copying build/lib.linux-armv7l-cpython-311/parmed/amber/offlib.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-14T13:15:12,878 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-14T13:15:12,901 creating build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-14T13:15:12,902 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/ewald.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-14T13:15:12,904 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/cntrl.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-14T13:15:12,906 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/qmmm.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-14T13:15:12,908 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-14T13:15:12,910 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/mdin.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-14T13:15:12,912 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/pb.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-14T13:15:12,914 copying build/lib.linux-armv7l-cpython-311/parmed/amber/netcdffiles.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-14T13:15:12,917 copying build/lib.linux-armv7l-cpython-311/parmed/amber/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-14T13:15:12,919 copying build/lib.linux-armv7l-cpython-311/parmed/exceptions.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-14T13:15:12,922 creating build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-14T13:15:12,923 copying build/lib.linux-armv7l-cpython-311/parmed/tools/parmed_cmd.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-14T13:15:12,925 copying build/lib.linux-armv7l-cpython-311/parmed/tools/parmlist.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-14T13:15:12,927 copying build/lib.linux-armv7l-cpython-311/parmed/tools/logos.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-14T13:15:12,929 copying build/lib.linux-armv7l-cpython-311/parmed/tools/changeradii.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-14T13:15:12,932 creating build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-14T13:15:12,933 copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/sanderapi.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-14T13:15:12,936 copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-14T13:15:12,937 copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/openmm.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-14T13:15:12,941 creating build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-14T13:15:12,941 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guifiletools.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-14T13:15:12,943 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-14T13:15:12,945 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/_guiwidgets.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-14T13:15:12,947 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guitools.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-14T13:15:12,949 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guiactions.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-14T13:15:12,951 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/_guiactions.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-14T13:15:12,954 copying build/lib.linux-armv7l-cpython-311/parmed/tools/addljtype.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-14T13:15:12,956 copying build/lib.linux-armv7l-cpython-311/parmed/tools/coarsegrain.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-14T13:15:12,958 copying build/lib.linux-armv7l-cpython-311/parmed/tools/actions.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-14T13:15:12,963 copying build/lib.linux-armv7l-cpython-311/parmed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-14T13:15:12,964 copying build/lib.linux-armv7l-cpython-311/parmed/tools/argumentlist.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-14T13:15:12,966 copying build/lib.linux-armv7l-cpython-311/parmed/tools/add1264.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-14T13:15:12,969 copying build/lib.linux-armv7l-cpython-311/parmed/tools/checkvalidity.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-14T13:15:12,971 copying build/lib.linux-armv7l-cpython-311/parmed/tools/exceptions.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-14T13:15:12,973 creating build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-14T13:15:12,974 copying build/lib.linux-armv7l-cpython-311/parmed/formats/registry.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-14T13:15:12,977 copying build/lib.linux-armv7l-cpython-311/parmed/formats/sdf.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-14T13:15:12,978 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdb.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-14T13:15:12,982 copying build/lib.linux-armv7l-cpython-311/parmed/formats/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-14T13:15:12,983 copying build/lib.linux-armv7l-cpython-311/parmed/formats/psf.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-14T13:15:12,986 copying build/lib.linux-armv7l-cpython-311/parmed/formats/mol2.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-14T13:15:12,989 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pqr.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-14T13:15:12,991 creating build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-14T13:15:12,992 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-14T13:15:12,995 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-14T13:15:12,997 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxReader.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-14T13:15:12,999 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-14T13:15:13,001 copying build/lib.linux-armv7l-cpython-311/parmed/parameters.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-14T13:15:13,004 running install_egg_info 2023-09-14T13:15:13,064 running egg_info 2023-09-14T13:15:13,065 creating ParmEd.egg-info 2023-09-14T13:15:13,093 writing ParmEd.egg-info/PKG-INFO 2023-09-14T13:15:13,104 writing dependency_links to ParmEd.egg-info/dependency_links.txt 2023-09-14T13:15:13,108 writing entry points to ParmEd.egg-info/entry_points.txt 2023-09-14T13:15:13,112 writing top-level names to ParmEd.egg-info/top_level.txt 2023-09-14T13:15:13,117 writing manifest file 'ParmEd.egg-info/SOURCES.txt' 2023-09-14T13:15:13,190 dependency src/CompatabilityMacros.h won't be automatically included in the manifest: the path doesn't exist 2023-09-14T13:15:13,215 reading manifest file 'ParmEd.egg-info/SOURCES.txt' 2023-09-14T13:15:13,223 writing manifest file 'ParmEd.egg-info/SOURCES.txt' 2023-09-14T13:15:13,225 Copying ParmEd.egg-info to build/bdist.linux-armv7l/wheel/ParmEd-3.4.2-py3.11.egg-info 2023-09-14T13:15:13,235 running install_scripts 2023-09-14T13:15:13,290 creating build/bdist.linux-armv7l/wheel/ParmEd-3.4.2.dist-info/WHEEL 2023-09-14T13:15:13,292 creating '/tmp/pip-wheel-ts4fz4ug/ParmEd-3.4.2-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-14T13:15:13,296 adding 'parmed/__init__.py' 2023-09-14T13:15:13,297 adding 'parmed/_version.py' 2023-09-14T13:15:13,299 adding 'parmed/constants.py' 2023-09-14T13:15:13,300 adding 'parmed/exceptions.py' 2023-09-14T13:15:13,303 adding 'parmed/geometry.py' 2023-09-14T13:15:13,306 adding 'parmed/parameters.py' 2023-09-14T13:15:13,309 adding 'parmed/periodic_table.py' 2023-09-14T13:15:13,311 adding 'parmed/residue.py' 2023-09-14T13:15:13,313 adding 'parmed/scripts.py' 2023-09-14T13:15:13,334 adding 'parmed/structure.py' 2023-09-14T13:15:13,337 adding 'parmed/symmetry.py' 2023-09-14T13:15:13,358 adding 'parmed/topologyobjects.py' 2023-09-14T13:15:13,361 adding 'parmed/vec3.py' 2023-09-14T13:15:13,363 adding 'parmed/amber/__init__.py' 2023-09-14T13:15:13,375 adding 'parmed/amber/_amberparm.py' 2023-09-14T13:15:13,380 adding 'parmed/amber/_chamberparm.py' 2023-09-14T13:15:13,541 adding 'parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so' 2023-09-14T13:15:13,553 adding 'parmed/amber/_tinkerparm.py' 2023-09-14T13:15:13,558 adding 'parmed/amber/amberformat.py' 2023-09-14T13:15:13,561 adding 'parmed/amber/asciicrd.py' 2023-09-14T13:15:13,564 adding 'parmed/amber/mask.py' 2023-09-14T13:15:13,568 adding 'parmed/amber/netcdffiles.py' 2023-09-14T13:15:13,571 adding 'parmed/amber/offlib.py' 2023-09-14T13:15:13,575 adding 'parmed/amber/parameters.py' 2023-09-14T13:15:13,578 adding 'parmed/amber/readparm.py' 2023-09-14T13:15:13,584 adding 'parmed/amber/titratable_residues.py' 2023-09-14T13:15:13,589 adding 'parmed/amber/mdin/__init__.py' 2023-09-14T13:15:13,591 adding 'parmed/amber/mdin/cntrl.py' 2023-09-14T13:15:13,594 adding 'parmed/amber/mdin/ewald.py' 2023-09-14T13:15:13,597 adding 'parmed/amber/mdin/mdin.py' 2023-09-14T13:15:13,600 adding 'parmed/amber/mdin/pb.py' 2023-09-14T13:15:13,602 adding 'parmed/amber/mdin/qmmm.py' 2023-09-14T13:15:13,606 adding 'parmed/charmm/__init__.py' 2023-09-14T13:15:13,609 adding 'parmed/charmm/_charmmfile.py' 2023-09-14T13:15:13,612 adding 'parmed/charmm/charmmcrds.py' 2023-09-14T13:15:13,619 adding 'parmed/charmm/parameters.py' 2023-09-14T13:15:13,625 adding 'parmed/charmm/psf.py' 2023-09-14T13:15:13,630 adding 'parmed/formats/__init__.py' 2023-09-14T13:15:13,634 adding 'parmed/formats/mol2.py' 2023-09-14T13:15:13,645 adding 'parmed/formats/pdb.py' 2023-09-14T13:15:13,649 adding 'parmed/formats/pqr.py' 2023-09-14T13:15:13,653 adding 'parmed/formats/psf.py' 2023-09-14T13:15:13,656 adding 'parmed/formats/registry.py' 2023-09-14T13:15:13,659 adding 'parmed/formats/sdf.py' 2023-09-14T13:15:13,667 adding 'parmed/formats/pdbx/PdbxContainers.py' 2023-09-14T13:15:13,670 adding 'parmed/formats/pdbx/PdbxReader.py' 2023-09-14T13:15:13,672 adding 'parmed/formats/pdbx/PdbxWriter.py' 2023-09-14T13:15:13,674 adding 'parmed/formats/pdbx/__init__.py' 2023-09-14T13:15:13,676 adding 'parmed/gromacs/__init__.py' 2023-09-14T13:15:13,679 adding 'parmed/gromacs/_cpp.py' 2023-09-14T13:15:13,680 adding 'parmed/gromacs/_gromacsfile.py' 2023-09-14T13:15:13,683 adding 'parmed/gromacs/gromacsgro.py' 2023-09-14T13:15:13,694 adding 'parmed/gromacs/gromacstop.py' 2023-09-14T13:15:13,697 adding 'parmed/modeller/__init__.py' 2023-09-14T13:15:13,703 adding 'parmed/modeller/residue.py' 2023-09-14T13:15:13,704 adding 'parmed/modeller/standardtemplates.py' 2023-09-14T13:15:13,713 adding 'parmed/modeller/data/standard_residues.lib' 2023-09-14T13:15:13,716 adding 'parmed/namd/__init__.py' 2023-09-14T13:15:13,718 adding 'parmed/namd/namdbinfiles.py' 2023-09-14T13:15:13,720 adding 'parmed/openmm/__init__.py' 2023-09-14T13:15:13,726 adding 'parmed/openmm/parameters.py' 2023-09-14T13:15:13,731 adding 'parmed/openmm/reporters.py' 2023-09-14T13:15:13,734 adding 'parmed/openmm/topsystem.py' 2023-09-14T13:15:13,736 adding 'parmed/openmm/utils.py' 2023-09-14T13:15:13,738 adding 'parmed/openmm/xmlfile.py' 2023-09-14T13:15:13,741 adding 'parmed/rdkit/__init__.py' 2023-09-14T13:15:13,742 adding 'parmed/rdkit/rdkit.py' 2023-09-14T13:15:13,743 adding 'parmed/rosetta/__init__.py' 2023-09-14T13:15:13,744 adding 'parmed/rosetta/pose.py' 2023-09-14T13:15:13,746 adding 'parmed/tinker/__init__.py' 2023-09-14T13:15:13,748 adding 'parmed/tinker/parameterfile.py' 2023-09-14T13:15:13,751 adding 'parmed/tinker/system.py' 2023-09-14T13:15:13,752 adding 'parmed/tinker/tinkerfiles.py' 2023-09-14T13:15:13,754 adding 'parmed/tinker/topologyobjects.py' 2023-09-14T13:15:13,756 adding 'parmed/tools/__init__.py' 2023-09-14T13:15:13,777 adding 'parmed/tools/actions.py' 2023-09-14T13:15:13,781 adding 'parmed/tools/add1264.py' 2023-09-14T13:15:13,782 adding 'parmed/tools/addljtype.py' 2023-09-14T13:15:13,784 adding 'parmed/tools/argumentlist.py' 2023-09-14T13:15:13,786 adding 'parmed/tools/changeradii.py' 2023-09-14T13:15:13,788 adding 'parmed/tools/checkvalidity.py' 2023-09-14T13:15:13,790 adding 'parmed/tools/coarsegrain.py' 2023-09-14T13:15:13,791 adding 'parmed/tools/exceptions.py' 2023-09-14T13:15:13,793 adding 'parmed/tools/logos.py' 2023-09-14T13:15:13,796 adding 'parmed/tools/parmed_cmd.py' 2023-09-14T13:15:13,797 adding 'parmed/tools/parmlist.py' 2023-09-14T13:15:13,799 adding 'parmed/tools/gui/__init__.py' 2023-09-14T13:15:13,803 adding 'parmed/tools/gui/_guiactions.py' 2023-09-14T13:15:13,806 adding 'parmed/tools/gui/_guiwidgets.py' 2023-09-14T13:15:13,807 adding 'parmed/tools/gui/guiactions.py' 2023-09-14T13:15:13,808 adding 'parmed/tools/gui/guifiletools.py' 2023-09-14T13:15:13,810 adding 'parmed/tools/gui/guitools.py' 2023-09-14T13:15:13,811 adding 'parmed/tools/simulations/__init__.py' 2023-09-14T13:15:13,816 adding 'parmed/tools/simulations/openmm.py' 2023-09-14T13:15:13,818 adding 'parmed/tools/simulations/sanderapi.py' 2023-09-14T13:15:13,820 adding 'parmed/unit/__init__.py' 2023-09-14T13:15:13,821 adding 'parmed/unit/basedimension.py' 2023-09-14T13:15:13,823 adding 'parmed/unit/baseunit.py' 2023-09-14T13:15:13,824 adding 'parmed/unit/constants.py' 2023-09-14T13:15:13,826 adding 'parmed/unit/mymatrix.py' 2023-09-14T13:15:13,828 adding 'parmed/unit/prefix.py' 2023-09-14T13:15:13,832 adding 'parmed/unit/quantity.py' 2023-09-14T13:15:13,833 adding 'parmed/unit/standard_dimensions.py' 2023-09-14T13:15:13,837 adding 'parmed/unit/unit.py' 2023-09-14T13:15:13,839 adding 'parmed/unit/unit_definitions.py' 2023-09-14T13:15:13,840 adding 'parmed/unit/unit_math.py' 2023-09-14T13:15:13,842 adding 'parmed/unit/unit_operators.py' 2023-09-14T13:15:13,844 adding 'parmed/utils/__init__.py' 2023-09-14T13:15:13,845 adding 'parmed/utils/decorators.py' 2023-09-14T13:15:13,847 adding 'parmed/utils/io.py' 2023-09-14T13:15:13,852 adding 'parmed/utils/netcdf.py' 2023-09-14T13:15:13,854 adding 'parmed/utils/pairlist.py' 2023-09-14T13:15:13,855 adding 'parmed/utils/pandautils.py' 2023-09-14T13:15:13,859 adding 'parmed/utils/six.py' 2023-09-14T13:15:13,861 adding 'parmed/utils/timer.py' 2023-09-14T13:15:13,863 adding 'parmed/utils/fortranformat/FortranRecordReader.py' 2023-09-14T13:15:13,864 adding 'parmed/utils/fortranformat/FortranRecordWriter.py' 2023-09-14T13:15:13,865 adding 'parmed/utils/fortranformat/__init__.py' 2023-09-14T13:15:13,867 adding 'parmed/utils/fortranformat/_edit_descriptors.py' 2023-09-14T13:15:13,868 adding 'parmed/utils/fortranformat/_exceptions.py' 2023-09-14T13:15:13,870 adding 'parmed/utils/fortranformat/_input.py' 2023-09-14T13:15:13,871 adding 'parmed/utils/fortranformat/_lexer.py' 2023-09-14T13:15:13,872 adding 'parmed/utils/fortranformat/_misc.py' 2023-09-14T13:15:13,876 adding 'parmed/utils/fortranformat/_output.py' 2023-09-14T13:15:13,877 adding 'parmed/utils/fortranformat/_parser.py' 2023-09-14T13:15:13,879 adding 'parmed/utils/fortranformat/config.py' 2023-09-14T13:15:13,880 adding 'ParmEd-3.4.2.dist-info/METADATA' 2023-09-14T13:15:13,881 adding 'ParmEd-3.4.2.dist-info/WHEEL' 2023-09-14T13:15:13,881 adding 'ParmEd-3.4.2.dist-info/entry_points.txt' 2023-09-14T13:15:13,882 adding 'ParmEd-3.4.2.dist-info/top_level.txt' 2023-09-14T13:15:13,884 adding 'ParmEd-3.4.2.dist-info/RECORD' 2023-09-14T13:15:13,896 removing build/bdist.linux-armv7l/wheel 2023-09-14T13:15:14,073 Building wheel for parmed (setup.py): finished with status 'done' 2023-09-14T13:15:14,086 Created wheel for parmed: filename=ParmEd-3.4.2-cp311-cp311-linux_armv7l.whl size=875655 sha256=eb0db4024420811f94895db2c9b8523a5be2e431888f8e0acecf2944f9a210b2 2023-09-14T13:15:14,087 Stored in directory: /tmp/pip-ephem-wheel-cache-k1jba7nc/wheels/f4/23/15/2226b64520d3f32b97cd5c2d0881e13d11d843b859e68aa5e8 2023-09-14T13:15:14,099 Successfully built parmed 2023-09-14T13:15:14,124 Removed build tracker: '/tmp/pip-build-tracker-o070yxso'