2023-09-14T14:38:11,112 Created temporary directory: /tmp/pip-build-tracker-9rvg2r61
2023-09-14T14:38:11,113 Initialized build tracking at /tmp/pip-build-tracker-9rvg2r61
2023-09-14T14:38:11,113 Created build tracker: /tmp/pip-build-tracker-9rvg2r61
2023-09-14T14:38:11,114 Entered build tracker: /tmp/pip-build-tracker-9rvg2r61
2023-09-14T14:38:11,115 Created temporary directory: /tmp/pip-wheel-pwl2ah2m
2023-09-14T14:38:11,118 Created temporary directory: /tmp/pip-ephem-wheel-cache-a1ud7kdm
2023-09-14T14:38:11,139 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-14T14:38:11,143 2 location(s) to search for versions of pyckmeans:
2023-09-14T14:38:11,143 * https://pypi.org/simple/pyckmeans/
2023-09-14T14:38:11,143 * https://www.piwheels.org/simple/pyckmeans/
2023-09-14T14:38:11,144 Fetching project page and analyzing links: https://pypi.org/simple/pyckmeans/
2023-09-14T14:38:11,144 Getting page https://pypi.org/simple/pyckmeans/
2023-09-14T14:38:11,146 Found index url https://pypi.org/simple/
2023-09-14T14:38:11,291 Fetched page https://pypi.org/simple/pyckmeans/ as application/vnd.pypi.simple.v1+json
2023-09-14T14:38:11,306   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/b9/de/b88d7cf79a79413b55544b2518298d141dc0ed1eb523c9ad11a36138e898/pyckmeans-0.4.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,307   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/57/d5/5da769497ad168ee6529d7694269c441b3ab416b92bb9f41256be2d26b43/pyckmeans-0.4.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,307   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/d8/05/6aa2b5a06f19176e9207ebd22ce4d4a6667a8c606fd49dc1eba29afd8e0e/pyckmeans-0.4.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,308   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/28/62/743350f8f49afc793a2e91ab4523a7445ff6fa24bd2048197179df2e99de/pyckmeans-0.4.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,309   Found link https://files.pythonhosted.org/packages/78/97/a48f8178873dcdcdab83fbcc419e3c80ebd8cc7128b24bc16c5b6294e9c0/pyckmeans-0.4.0.tar.gz (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6), version: 0.4.0
2023-09-14T14:38:11,310   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/83/f7/9bef4342f20a1bad591d43bfe81132594cb3c2a970194243dac4f4aac2c2/pyckmeans-0.5.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,311   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/b6/63/6d4ec459f0fe9a3701e34f8c1d0a7508691f9a11b626fb619e7f7ace2b0d/pyckmeans-0.5.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,311   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/29/96/022e5cd2da35200b47f4eb6be702b6c9ebe565056b2e3282caca13c46d71/pyckmeans-0.5.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,312   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/78/e2/0cd85235fadff92995027121701789d834648654346d146dae672a0d88a7/pyckmeans-0.5.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,313   Found link https://files.pythonhosted.org/packages/09/52/c44e7ae21dedb7303be86860b235681d8920546c43350be71c82557f5dba/pyckmeans-0.5.0.tar.gz (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6), version: 0.5.0
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2023-09-14T14:38:11,314   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/31/32/553ccffbd908bb6842ff8c932756b418698042e1c94eaf38100fbdf3dd96/pyckmeans-0.6.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,315   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/ef/ce/5d6de11a933c49b3c2e485b28e4ae91ec65bdb30d9d809bd68b289a55e1c/pyckmeans-0.6.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,316   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/b5/a8/04c6c8ddc29443c8052a2578592fd54ae63aa8b7c7675bd1dcf9bab5c325/pyckmeans-0.6.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,317   Found link https://files.pythonhosted.org/packages/66/4a/274ddf2960f9a60d24ce2e4647ded134b72f91148b0005d412e48df4b8b1/pyckmeans-0.6.0.tar.gz (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6), version: 0.6.0
2023-09-14T14:38:11,317   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/a0/a3/3382a47bc2a9a8bf779a9b55326d55f5a068043eb32b9b77aea7b7f2f260/pyckmeans-0.6.1-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,318   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/96/f9/d0c5cd3d2c23f4eda290c14c6c0e5aefd46f58a80f8cca602af70a3fd767/pyckmeans-0.6.1-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,318   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/ef/a0/3bfe70379e9897e7a19758d6b1179af010b8501050db6574e701916a1d90/pyckmeans-0.6.1-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,319   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/09/3f/5f920b3406eff6893dad0b2be11a827064f484c744e8b6c261a9fe56e086/pyckmeans-0.6.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,319   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/ce/56/a8bafed96f0be6e2af64501801f387a5fc26127170f99152c1ab2bc9c211/pyckmeans-0.6.1-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,320   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/57/56/6760810822af255d2cd9763177543695a88b0f9dc042bde9407c38533e07/pyckmeans-0.6.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,321   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/43/26/b8e716fcb2a96010fd04061ab2787efd32ec99314339344e070db0bf4ac1/pyckmeans-0.6.1-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,321   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/b5/ab/7027ee76e52a46028817e8965ca6ec671f063b1fea95764a0acfbf0d7596/pyckmeans-0.6.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,322   Found link https://files.pythonhosted.org/packages/6a/d6/406f57ed2c6e4b627e7d00a9204712c59ed91d60f621d4bd490ce53958f3/pyckmeans-0.6.1.tar.gz (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6), version: 0.6.1
2023-09-14T14:38:11,323   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/c7/3b/2b24acaf264211fb13af47443f05dc9f17402e9eb16458161fa03fa65c82/pyckmeans-0.8.0-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,324   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/fe/00/b14a57cec4da2fccffad89c2c9d1909c76b8ba7aaba31b9b81e0cebbfe46/pyckmeans-0.8.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,325   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/e2/21/0962e892ef24ef9b86872033d2d18d072bd6782b674b7d1386c7215c384a/pyckmeans-0.8.0-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,325   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/ce/e5/4c3a9ac1e68afd848f4fa9a8264b8db583a98142fe1c4acd28935b156bfc/pyckmeans-0.8.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,326   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/c4/b8/250a329203c4017c83e3b99dfcb8ecc6ce7c97c6100973914c7881d43ae6/pyckmeans-0.8.0-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,326   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/be/a8/65a40e13b7b860dc7df7937b365cc70259e700fe83500808df8b919d1eba/pyckmeans-0.8.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,327   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/81/10/86a16f70893eb1cf303fe66b36e7a957824f1124a77ffa0ffc6b7228120e/pyckmeans-0.8.0-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,327   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/ba/82/cc2fe56f2fcb73ad57ecdff17bc79974db79d1a4bbfedfe1416782346761/pyckmeans-0.8.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,328   Found link https://files.pythonhosted.org/packages/fe/48/2b6e70758277599b2316f4fe42caacda43aa5d8e331d526d64e32adc119f/pyckmeans-0.8.0.tar.gz (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6), version: 0.8.0
2023-09-14T14:38:11,329   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/eb/42/91be076e635ad4b4021f22e65ecab8debfa766f55acda8dd0ce15081fab1/pyckmeans-0.8.1-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,329   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/5b/55/085d7b4872458e47063137126d0235d2fa6764f9b871fdafbdb21e232f3d/pyckmeans-0.8.1-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,330   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/4a/cc/07ad2b5b03c4e69418cd4301aaa4a65a5483b52d167edaf76e5e9f904746/pyckmeans-0.8.1-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,331   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/e2/a0/440da62c31a3b76dd4776b2dfd3c37263793e02eed07b3091c1bb2192a6c/pyckmeans-0.8.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,331   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/4c/a2/09f4fd2a0365aea5e1a983ddbe270e75a178063e747057766005cf1e073b/pyckmeans-0.8.1-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,332   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/9a/ea/05e022686680d17c217a950ae8e92202fd165f7ec64235a5659bb7cf96b1/pyckmeans-0.8.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
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2023-09-14T14:38:11,336   Skipping link: No binaries permitted for pyckmeans: https://files.pythonhosted.org/packages/c4/59/9ca3f79baad749f423691076ddfe8a467a08704a8f7c538c868f70d83f17/pyckmeans-0.8.2-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyckmeans/) (requires-python:>=3.6)
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2023-09-14T14:38:11,659   Skipping link: No binaries permitted for pyckmeans: https://www.piwheels.org/simple/pyckmeans/pyckmeans-0.4.0-cp37-cp37m-linux_armv6l.whl#sha256=3ce14a9d9c6d38292fa0b21ae357dea7cf25fe1d2bab349e5f21cc18cd9c1aa9 (from https://www.piwheels.org/simple/pyckmeans/) (requires-python:>=3.6)
2023-09-14T14:38:11,660 Skipping link: not a file: https://www.piwheels.org/simple/pyckmeans/
2023-09-14T14:38:11,660 Skipping link: not a file: https://pypi.org/simple/pyckmeans/
2023-09-14T14:38:11,679 Given no hashes to check 1 links for project 'pyckmeans': discarding no candidates
2023-09-14T14:38:11,697 Collecting pyckmeans==0.9.1
2023-09-14T14:38:11,699   Created temporary directory: /tmp/pip-unpack-0f2xrbvc
2023-09-14T14:38:11,919   Downloading pyckmeans-0.9.1.tar.gz (50 kB)
2023-09-14T14:38:12,028   Added pyckmeans==0.9.1 from https://files.pythonhosted.org/packages/c8/20/327abc400745123bd40c4a6288edcdedf5148495ceec2a8894ae8b90ac8d/pyckmeans-0.9.1.tar.gz to build tracker '/tmp/pip-build-tracker-9rvg2r61'
2023-09-14T14:38:12,029   Running setup.py (path:/tmp/pip-wheel-pwl2ah2m/pyckmeans_980cb8990e6d4b81b57857d0ecefc836/setup.py) egg_info for package pyckmeans
2023-09-14T14:38:12,030   Created temporary directory: /tmp/pip-pip-egg-info-md9sxkgk
2023-09-14T14:38:12,031   Preparing metadata (setup.py): started
2023-09-14T14:38:12,032   Running command python setup.py egg_info
2023-09-14T14:38:13,053   running egg_info
2023-09-14T14:38:13,055   creating /tmp/pip-pip-egg-info-md9sxkgk/pyckmeans.egg-info
2023-09-14T14:38:13,079   writing /tmp/pip-pip-egg-info-md9sxkgk/pyckmeans.egg-info/PKG-INFO
2023-09-14T14:38:13,083   writing dependency_links to /tmp/pip-pip-egg-info-md9sxkgk/pyckmeans.egg-info/dependency_links.txt
2023-09-14T14:38:13,085   writing requirements to /tmp/pip-pip-egg-info-md9sxkgk/pyckmeans.egg-info/requires.txt
2023-09-14T14:38:13,086   writing top-level names to /tmp/pip-pip-egg-info-md9sxkgk/pyckmeans.egg-info/top_level.txt
2023-09-14T14:38:13,088   writing manifest file '/tmp/pip-pip-egg-info-md9sxkgk/pyckmeans.egg-info/SOURCES.txt'
2023-09-14T14:38:13,167   reading manifest file '/tmp/pip-pip-egg-info-md9sxkgk/pyckmeans.egg-info/SOURCES.txt'
2023-09-14T14:38:13,171   writing manifest file '/tmp/pip-pip-egg-info-md9sxkgk/pyckmeans.egg-info/SOURCES.txt'
2023-09-14T14:38:13,278   Preparing metadata (setup.py): finished with status 'done'
2023-09-14T14:38:13,283   Source in /tmp/pip-wheel-pwl2ah2m/pyckmeans_980cb8990e6d4b81b57857d0ecefc836 has version 0.9.1, which satisfies requirement pyckmeans==0.9.1 from https://files.pythonhosted.org/packages/c8/20/327abc400745123bd40c4a6288edcdedf5148495ceec2a8894ae8b90ac8d/pyckmeans-0.9.1.tar.gz
2023-09-14T14:38:13,284   Removed pyckmeans==0.9.1 from https://files.pythonhosted.org/packages/c8/20/327abc400745123bd40c4a6288edcdedf5148495ceec2a8894ae8b90ac8d/pyckmeans-0.9.1.tar.gz from build tracker '/tmp/pip-build-tracker-9rvg2r61'
2023-09-14T14:38:13,291 Created temporary directory: /tmp/pip-unpack-pzt4hlol
2023-09-14T14:38:13,292 Created temporary directory: /tmp/pip-unpack-l4bytiw8
2023-09-14T14:38:13,302 Building wheels for collected packages: pyckmeans
2023-09-14T14:38:13,306   Created temporary directory: /tmp/pip-wheel-1gmvti1x
2023-09-14T14:38:13,307   Building wheel for pyckmeans (setup.py): started
2023-09-14T14:38:13,308   Destination directory: /tmp/pip-wheel-1gmvti1x
2023-09-14T14:38:13,309   Running command python setup.py bdist_wheel
2023-09-14T14:38:14,287   running bdist_wheel
2023-09-14T14:38:14,357   running build
2023-09-14T14:38:14,357   running build_py
2023-09-14T14:38:14,383   creating build
2023-09-14T14:38:14,383   creating build/lib.linux-armv7l-cpython-311
2023-09-14T14:38:14,384   creating build/lib.linux-armv7l-cpython-311/pyckmeans
2023-09-14T14:38:14,385   copying pyckmeans/__init__.py -> build/lib.linux-armv7l-cpython-311/pyckmeans
2023-09-14T14:38:14,387   creating build/lib.linux-armv7l-cpython-311/pyckmeans/utils
2023-09-14T14:38:14,388   copying pyckmeans/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/utils
2023-09-14T14:38:14,390   copying pyckmeans/utils/plotting.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/utils
2023-09-14T14:38:14,392   copying pyckmeans/utils/progressbar.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/utils
2023-09-14T14:38:14,394   creating build/lib.linux-armv7l-cpython-311/pyckmeans/ordering
2023-09-14T14:38:14,395   copying pyckmeans/ordering/__init__.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/ordering
2023-09-14T14:38:14,397   creating build/lib.linux-armv7l-cpython-311/pyckmeans/knee
2023-09-14T14:38:14,398   copying pyckmeans/knee/__init__.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/knee
2023-09-14T14:38:14,401   creating build/lib.linux-armv7l-cpython-311/pyckmeans/distance
2023-09-14T14:38:14,402   copying pyckmeans/distance/__init__.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/distance
2023-09-14T14:38:14,404   copying pyckmeans/distance/c_interop.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/distance
2023-09-14T14:38:14,406   creating build/lib.linux-armv7l-cpython-311/pyckmeans/core
2023-09-14T14:38:14,407   copying pyckmeans/core/__init__.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/core
2023-09-14T14:38:14,409   copying pyckmeans/core/ckmeans.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/core
2023-09-14T14:38:14,411   copying pyckmeans/core/multickmeans.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/core
2023-09-14T14:38:14,414   copying pyckmeans/core/utils.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/core
2023-09-14T14:38:14,415   copying pyckmeans/core/wecr.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/core
2023-09-14T14:38:14,419   creating build/lib.linux-armv7l-cpython-311/pyckmeans/ordination
2023-09-14T14:38:14,420   copying pyckmeans/ordination/__init__.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/ordination
2023-09-14T14:38:14,422   copying pyckmeans/ordination/utils.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/ordination
2023-09-14T14:38:14,424   creating build/lib.linux-armv7l-cpython-311/pyckmeans/io
2023-09-14T14:38:14,425   copying pyckmeans/io/__init__.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/io
2023-09-14T14:38:14,427   copying pyckmeans/io/c_interop.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/io
2023-09-14T14:38:14,429   copying pyckmeans/io/csv.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/io
2023-09-14T14:38:14,430   copying pyckmeans/io/fasta.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/io
2023-09-14T14:38:14,432   copying pyckmeans/io/phylip.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/io
2023-09-14T14:38:14,434   copying pyckmeans/io/nucleotide_alignment.py -> build/lib.linux-armv7l-cpython-311/pyckmeans/io
2023-09-14T14:38:14,440   running build_ext
2023-09-14T14:38:14,445   building 'pyckmeans.distance.lib.distance' extension
2023-09-14T14:38:14,446   creating build/temp.linux-armv7l-cpython-311
2023-09-14T14:38:14,447   creating build/temp.linux-armv7l-cpython-311/pyckmeans
2023-09-14T14:38:14,447   creating build/temp.linux-armv7l-cpython-311/pyckmeans/distance
2023-09-14T14:38:14,448   creating build/temp.linux-armv7l-cpython-311/pyckmeans/distance/src
2023-09-14T14:38:14,449   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c pyckmeans/distance/src/distance.cpp -o build/temp.linux-armv7l-cpython-311/pyckmeans/distance/src/distance.o
2023-09-14T14:38:15,972   pyckmeans/distance/src/distance.cpp: In function ‘std::vector<bool> completeDeletionSites(uint8_t*, int, int)’:
2023-09-14T14:38:15,973   pyckmeans/distance/src/distance.cpp:107:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:15,973     107 |     for (size_t i = 0; i < m; ++i) {
2023-09-14T14:38:15,974         |                        ~~^~~
2023-09-14T14:38:15,975   pyckmeans/distance/src/distance.cpp:109:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:15,975     109 |         for (size_t j = 0; j < n; ++j) {
2023-09-14T14:38:15,976         |                            ~~^~~
2023-09-14T14:38:15,978   pyckmeans/distance/src/distance.cpp: In function ‘void pDistance(uint8_t*, int, int, bool, double*)’:
2023-09-14T14:38:15,979   pyckmeans/distance/src/distance.cpp:133:34: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:15,979     133 |         for (size_t i_a = 0; i_a < (n - 1); ++i_a) {
2023-09-14T14:38:15,980         |                              ~~~~^~~~~~~~~
2023-09-14T14:38:15,980   pyckmeans/distance/src/distance.cpp:134:46: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:15,981     134 |             for (size_t i_b = (i_a + 1); i_b < n; ++i_b) {
2023-09-14T14:38:15,981         |                                          ~~~~^~~
2023-09-14T14:38:15,982   pyckmeans/distance/src/distance.cpp:138:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:15,983     138 |                 for (size_t j = 0; j < m; ++j) {
2023-09-14T14:38:15,983         |                                    ~~^~~
2023-09-14T14:38:15,985   pyckmeans/distance/src/distance.cpp:163:34: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:15,986     163 |         for (size_t i_a = 0; i_a < (n - 1); ++i_a) {
2023-09-14T14:38:15,987         |                              ~~~~^~~~~~~~~
2023-09-14T14:38:15,987   pyckmeans/distance/src/distance.cpp:164:46: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:15,988     164 |             for (size_t i_b = (i_a + 1); i_b < n; ++i_b) {
2023-09-14T14:38:15,989         |                                          ~~~~^~~
2023-09-14T14:38:15,990   pyckmeans/distance/src/distance.cpp:168:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:15,991     168 |                 for (size_t j = 0; j < m; ++j) {
2023-09-14T14:38:15,991         |                                    ~~^~~
2023-09-14T14:38:15,993   pyckmeans/distance/src/distance.cpp: In function ‘void jcDistance(uint8_t*, int, int, bool, double*)’:
2023-09-14T14:38:15,994   pyckmeans/distance/src/distance.cpp:202:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:15,994     202 |     for (size_t i = 0; i < n; ++i) {
2023-09-14T14:38:15,995         |                        ~~^~~
2023-09-14T14:38:15,995   pyckmeans/distance/src/distance.cpp:203:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:15,996     203 |         for (size_t j = 0; j < n; ++j) {
2023-09-14T14:38:15,997         |                            ~~^~~
2023-09-14T14:38:15,998   pyckmeans/distance/src/distance.cpp: In function ‘void k2pDistance(uint8_t*, int, int, bool, double*)’:
2023-09-14T14:38:15,999   pyckmeans/distance/src/distance.cpp:221:34: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:16,000     221 |         for (size_t i_a = 0; i_a < (n - 1); ++i_a) {
2023-09-14T14:38:16,001         |                              ~~~~^~~~~~~~~
2023-09-14T14:38:16,001   pyckmeans/distance/src/distance.cpp:222:46: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:16,002     222 |             for (size_t i_b = (i_a + 1); i_b < n; ++i_b) {
2023-09-14T14:38:16,002         |                                          ~~~~^~~
2023-09-14T14:38:16,002   pyckmeans/distance/src/distance.cpp:227:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:16,003     227 |                 for (size_t j = 0; j < m; ++j) {
2023-09-14T14:38:16,003         |                                    ~~^~~
2023-09-14T14:38:16,006   pyckmeans/distance/src/distance.cpp:263:34: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:16,006     263 |         for (size_t i_a = 0; i_a < (n - 1); ++i_a) {
2023-09-14T14:38:16,007         |                              ~~~~^~~~~~~~~
2023-09-14T14:38:16,007   pyckmeans/distance/src/distance.cpp:264:46: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:16,008     264 |             for (size_t i_b = (i_a + 1); i_b < n; ++i_b) {
2023-09-14T14:38:16,008         |                                          ~~~~^~~
2023-09-14T14:38:16,009   pyckmeans/distance/src/distance.cpp:269:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:16,010     269 |                 for (size_t j = 0; j < m; ++j) {
2023-09-14T14:38:16,010         |                                    ~~^~~
2023-09-14T14:38:16,932   creating build/lib.linux-armv7l-cpython-311/pyckmeans/distance/lib
2023-09-14T14:38:16,933   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pyckmeans/distance/src/distance.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pyckmeans/distance/lib/distance.so
2023-09-14T14:38:17,163   building 'pyckmeans.io.lib.nucencode' extension
2023-09-14T14:38:17,164   creating build/temp.linux-armv7l-cpython-311/pyckmeans/io
2023-09-14T14:38:17,164   creating build/temp.linux-armv7l-cpython-311/pyckmeans/io/src
2023-09-14T14:38:17,165   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c pyckmeans/io/src/nucencode.cpp -o build/temp.linux-armv7l-cpython-311/pyckmeans/io/src/nucencode.o
2023-09-14T14:38:17,240   pyckmeans/io/src/nucencode.cpp: In function ‘void encodeNucleotides(uint8_t*, int, int)’:
2023-09-14T14:38:17,240   pyckmeans/io/src/nucencode.cpp:73:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:17,241      73 |     for (size_t i = 0; i < n; i++) {
2023-09-14T14:38:17,242         |                        ~~^~~
2023-09-14T14:38:17,243   pyckmeans/io/src/nucencode.cpp:74:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:17,243      74 |         for (size_t j = 0; j < m; j++) {
2023-09-14T14:38:17,244         |                            ~~^~~
2023-09-14T14:38:17,245   pyckmeans/io/src/nucencode.cpp: In function ‘void encodeNucleotides_uint32(uint32_t*, int, int, uint8_t*)’:
2023-09-14T14:38:17,245   pyckmeans/io/src/nucencode.cpp:86:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:17,246      86 |     for (size_t i = 0; i < n; i++) {
2023-09-14T14:38:17,247         |                        ~~^~~
2023-09-14T14:38:17,248   pyckmeans/io/src/nucencode.cpp:87:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-14T14:38:17,248      87 |         for (size_t j = 0; j < m; j++) {
2023-09-14T14:38:17,249         |                            ~~^~~
2023-09-14T14:38:17,319   creating build/lib.linux-armv7l-cpython-311/pyckmeans/io/lib
2023-09-14T14:38:17,319   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pyckmeans/io/src/nucencode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pyckmeans/io/lib/nucencode.so
2023-09-14T14:38:17,458   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-14T14:38:17,458   !!

2023-09-14T14:38:17,459           ********************************************************************************
2023-09-14T14:38:17,460           Please avoid running ``setup.py`` directly.
2023-09-14T14:38:17,460           Instead, use pypa/build, pypa/installer or other
2023-09-14T14:38:17,461           standards-based tools.

2023-09-14T14:38:17,462           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-14T14:38:17,462           ********************************************************************************

2023-09-14T14:38:17,463   !!
2023-09-14T14:38:17,464     self.initialize_options()
2023-09-14T14:38:17,482   installing to build/bdist.linux-armv7l/wheel
2023-09-14T14:38:17,483   running install
2023-09-14T14:38:17,505   running install_lib
2023-09-14T14:38:17,529   creating build/bdist.linux-armv7l
2023-09-14T14:38:17,530   creating build/bdist.linux-armv7l/wheel
2023-09-14T14:38:17,531   creating build/bdist.linux-armv7l/wheel/pyckmeans
2023-09-14T14:38:17,532   creating build/bdist.linux-armv7l/wheel/pyckmeans/utils
2023-09-14T14:38:17,533   copying build/lib.linux-armv7l-cpython-311/pyckmeans/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pyckmeans/utils
2023-09-14T14:38:17,535   copying build/lib.linux-armv7l-cpython-311/pyckmeans/utils/plotting.py -> build/bdist.linux-armv7l/wheel/pyckmeans/utils
2023-09-14T14:38:17,537   copying build/lib.linux-armv7l-cpython-311/pyckmeans/utils/progressbar.py -> build/bdist.linux-armv7l/wheel/pyckmeans/utils
2023-09-14T14:38:17,540   creating build/bdist.linux-armv7l/wheel/pyckmeans/ordering
2023-09-14T14:38:17,540   copying build/lib.linux-armv7l-cpython-311/pyckmeans/ordering/__init__.py -> build/bdist.linux-armv7l/wheel/pyckmeans/ordering
2023-09-14T14:38:17,543   creating build/bdist.linux-armv7l/wheel/pyckmeans/knee
2023-09-14T14:38:17,544   copying build/lib.linux-armv7l-cpython-311/pyckmeans/knee/__init__.py -> build/bdist.linux-armv7l/wheel/pyckmeans/knee
2023-09-14T14:38:17,547   copying build/lib.linux-armv7l-cpython-311/pyckmeans/__init__.py -> build/bdist.linux-armv7l/wheel/pyckmeans
2023-09-14T14:38:17,549   creating build/bdist.linux-armv7l/wheel/pyckmeans/distance
2023-09-14T14:38:17,550   copying build/lib.linux-armv7l-cpython-311/pyckmeans/distance/__init__.py -> build/bdist.linux-armv7l/wheel/pyckmeans/distance
2023-09-14T14:38:17,552   copying build/lib.linux-armv7l-cpython-311/pyckmeans/distance/c_interop.py -> build/bdist.linux-armv7l/wheel/pyckmeans/distance
2023-09-14T14:38:17,555   creating build/bdist.linux-armv7l/wheel/pyckmeans/distance/lib
2023-09-14T14:38:17,556   copying build/lib.linux-armv7l-cpython-311/pyckmeans/distance/lib/distance.so -> build/bdist.linux-armv7l/wheel/pyckmeans/distance/lib
2023-09-14T14:38:17,560   creating build/bdist.linux-armv7l/wheel/pyckmeans/core
2023-09-14T14:38:17,561   copying build/lib.linux-armv7l-cpython-311/pyckmeans/core/__init__.py -> build/bdist.linux-armv7l/wheel/pyckmeans/core
2023-09-14T14:38:17,562   copying build/lib.linux-armv7l-cpython-311/pyckmeans/core/ckmeans.py -> build/bdist.linux-armv7l/wheel/pyckmeans/core
2023-09-14T14:38:17,565   copying build/lib.linux-armv7l-cpython-311/pyckmeans/core/multickmeans.py -> build/bdist.linux-armv7l/wheel/pyckmeans/core
2023-09-14T14:38:17,567   copying build/lib.linux-armv7l-cpython-311/pyckmeans/core/utils.py -> build/bdist.linux-armv7l/wheel/pyckmeans/core
2023-09-14T14:38:17,569   copying build/lib.linux-armv7l-cpython-311/pyckmeans/core/wecr.py -> build/bdist.linux-armv7l/wheel/pyckmeans/core
2023-09-14T14:38:17,572   creating build/bdist.linux-armv7l/wheel/pyckmeans/ordination
2023-09-14T14:38:17,573   copying build/lib.linux-armv7l-cpython-311/pyckmeans/ordination/__init__.py -> build/bdist.linux-armv7l/wheel/pyckmeans/ordination
2023-09-14T14:38:17,576   copying build/lib.linux-armv7l-cpython-311/pyckmeans/ordination/utils.py -> build/bdist.linux-armv7l/wheel/pyckmeans/ordination
2023-09-14T14:38:17,578   creating build/bdist.linux-armv7l/wheel/pyckmeans/io
2023-09-14T14:38:17,578   copying build/lib.linux-armv7l-cpython-311/pyckmeans/io/__init__.py -> build/bdist.linux-armv7l/wheel/pyckmeans/io
2023-09-14T14:38:17,580   copying build/lib.linux-armv7l-cpython-311/pyckmeans/io/c_interop.py -> build/bdist.linux-armv7l/wheel/pyckmeans/io
2023-09-14T14:38:17,582   creating build/bdist.linux-armv7l/wheel/pyckmeans/io/lib
2023-09-14T14:38:17,583   copying build/lib.linux-armv7l-cpython-311/pyckmeans/io/lib/nucencode.so -> build/bdist.linux-armv7l/wheel/pyckmeans/io/lib
2023-09-14T14:38:17,585   copying build/lib.linux-armv7l-cpython-311/pyckmeans/io/csv.py -> build/bdist.linux-armv7l/wheel/pyckmeans/io
2023-09-14T14:38:17,587   copying build/lib.linux-armv7l-cpython-311/pyckmeans/io/fasta.py -> build/bdist.linux-armv7l/wheel/pyckmeans/io
2023-09-14T14:38:17,589   copying build/lib.linux-armv7l-cpython-311/pyckmeans/io/phylip.py -> build/bdist.linux-armv7l/wheel/pyckmeans/io
2023-09-14T14:38:17,591   copying build/lib.linux-armv7l-cpython-311/pyckmeans/io/nucleotide_alignment.py -> build/bdist.linux-armv7l/wheel/pyckmeans/io
2023-09-14T14:38:17,592   running install_egg_info
2023-09-14T14:38:17,652   running egg_info
2023-09-14T14:38:17,681   writing pyckmeans.egg-info/PKG-INFO
2023-09-14T14:38:17,686   writing dependency_links to pyckmeans.egg-info/dependency_links.txt
2023-09-14T14:38:17,688   writing requirements to pyckmeans.egg-info/requires.txt
2023-09-14T14:38:17,689   writing top-level names to pyckmeans.egg-info/top_level.txt
2023-09-14T14:38:17,720   reading manifest file 'pyckmeans.egg-info/SOURCES.txt'
2023-09-14T14:38:17,725   writing manifest file 'pyckmeans.egg-info/SOURCES.txt'
2023-09-14T14:38:17,726   Copying pyckmeans.egg-info to build/bdist.linux-armv7l/wheel/pyckmeans-0.9.1-py3.11.egg-info
2023-09-14T14:38:17,735   running install_scripts
2023-09-14T14:38:17,790   creating build/bdist.linux-armv7l/wheel/pyckmeans-0.9.1.dist-info/WHEEL
2023-09-14T14:38:17,792   creating '/tmp/pip-wheel-1gmvti1x/pyckmeans-0.9.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-14T14:38:17,794   adding 'pyckmeans/__init__.py'
2023-09-14T14:38:17,796   adding 'pyckmeans/core/__init__.py'
2023-09-14T14:38:17,799   adding 'pyckmeans/core/ckmeans.py'
2023-09-14T14:38:17,802   adding 'pyckmeans/core/multickmeans.py'
2023-09-14T14:38:17,803   adding 'pyckmeans/core/utils.py'
2023-09-14T14:38:17,808   adding 'pyckmeans/core/wecr.py'
2023-09-14T14:38:17,810   adding 'pyckmeans/distance/__init__.py'
2023-09-14T14:38:17,812   adding 'pyckmeans/distance/c_interop.py'
2023-09-14T14:38:17,827   adding 'pyckmeans/distance/lib/distance.so'
2023-09-14T14:38:17,829   adding 'pyckmeans/io/__init__.py'
2023-09-14T14:38:17,831   adding 'pyckmeans/io/c_interop.py'
2023-09-14T14:38:17,832   adding 'pyckmeans/io/csv.py'
2023-09-14T14:38:17,834   adding 'pyckmeans/io/fasta.py'
2023-09-14T14:38:17,836   adding 'pyckmeans/io/nucleotide_alignment.py'
2023-09-14T14:38:17,837   adding 'pyckmeans/io/phylip.py'
2023-09-14T14:38:17,840   adding 'pyckmeans/io/lib/nucencode.so'
2023-09-14T14:38:17,843   adding 'pyckmeans/knee/__init__.py'
2023-09-14T14:38:17,845   adding 'pyckmeans/ordering/__init__.py'
2023-09-14T14:38:17,848   adding 'pyckmeans/ordination/__init__.py'
2023-09-14T14:38:17,850   adding 'pyckmeans/ordination/utils.py'
2023-09-14T14:38:17,851   adding 'pyckmeans/utils/__init__.py'
2023-09-14T14:38:17,853   adding 'pyckmeans/utils/plotting.py'
2023-09-14T14:38:17,854   adding 'pyckmeans/utils/progressbar.py'
2023-09-14T14:38:17,857   adding 'pyckmeans-0.9.1.dist-info/METADATA'
2023-09-14T14:38:17,858   adding 'pyckmeans-0.9.1.dist-info/WHEEL'
2023-09-14T14:38:17,859   adding 'pyckmeans-0.9.1.dist-info/top_level.txt'
2023-09-14T14:38:17,860   adding 'pyckmeans-0.9.1.dist-info/RECORD'
2023-09-14T14:38:17,862   removing build/bdist.linux-armv7l/wheel
2023-09-14T14:38:17,982   Building wheel for pyckmeans (setup.py): finished with status 'done'
2023-09-14T14:38:17,986   Created wheel for pyckmeans: filename=pyckmeans-0.9.1-cp311-cp311-linux_armv7l.whl size=90997 sha256=2b7d6367027af4608e63b418ff82462bd4209183b50f94873043977d39e5c7f7
2023-09-14T14:38:17,987   Stored in directory: /tmp/pip-ephem-wheel-cache-a1ud7kdm/wheels/2f/64/51/75ee374f0996fedb000fbec3f94bedb58354c46e25255251ad
2023-09-14T14:38:17,999 Successfully built pyckmeans
2023-09-14T14:38:18,005 Removed build tracker: '/tmp/pip-build-tracker-9rvg2r61'