2023-09-15T00:28:34,792 Created temporary directory: /tmp/pip-build-tracker-9efietk8 2023-09-15T00:28:34,793 Initialized build tracking at /tmp/pip-build-tracker-9efietk8 2023-09-15T00:28:34,794 Created build tracker: /tmp/pip-build-tracker-9efietk8 2023-09-15T00:28:34,794 Entered build tracker: /tmp/pip-build-tracker-9efietk8 2023-09-15T00:28:34,795 Created temporary directory: /tmp/pip-wheel-tz30mcql 2023-09-15T00:28:34,798 Created temporary directory: /tmp/pip-ephem-wheel-cache-ke9nipuu 2023-09-15T00:28:34,820 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-15T00:28:34,823 2 location(s) to search for versions of glycopeptidepy: 2023-09-15T00:28:34,823 * https://pypi.org/simple/glycopeptidepy/ 2023-09-15T00:28:34,823 * https://www.piwheels.org/simple/glycopeptidepy/ 2023-09-15T00:28:34,824 Fetching project page and analyzing links: https://pypi.org/simple/glycopeptidepy/ 2023-09-15T00:28:34,825 Getting page https://pypi.org/simple/glycopeptidepy/ 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https://pypi.org/simple/glycopeptidepy/ 2023-09-15T00:28:35,472 Given no hashes to check 1 links for project 'glycopeptidepy': discarding no candidates 2023-09-15T00:28:35,490 Collecting glycopeptidepy==0.0.12 2023-09-15T00:28:35,492 Created temporary directory: /tmp/pip-unpack-a4h8rhc2 2023-09-15T00:28:36,265 Downloading glycopeptidepy-0.0.12.tar.gz (1.3 MB) 2023-09-15T00:28:37,143 Added glycopeptidepy==0.0.12 from https://files.pythonhosted.org/packages/2c/39/dc349656bb780f702d0d7cead9a14420bf8896b9aaf47d266bff3d0d3b20/glycopeptidepy-0.0.12.tar.gz to build tracker '/tmp/pip-build-tracker-9efietk8' 2023-09-15T00:28:37,148 Created temporary directory: /tmp/pip-build-env-r6wi5mdq 2023-09-15T00:28:37,152 Installing build dependencies: started 2023-09-15T00:28:37,154 Running command pip subprocess to install build dependencies 2023-09-15T00:28:38,360 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-15T00:28:38,841 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-15T00:28:40,753 Collecting setuptools 2023-09-15T00:28:40,754 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-15T00:28:40,761 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-15T00:28:40,970 Collecting wheel 2023-09-15T00:28:40,986 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-15T00:28:42,362 Collecting Cython 2023-09-15T00:28:42,363 Obtaining dependency information for Cython from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata 2023-09-15T00:28:42,368 Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-15T00:28:42,626 Collecting glypy 2023-09-15T00:28:42,641 Downloading https://www.piwheels.org/simple/glypy/glypy-1.0.3-cp311-cp311-linux_armv7l.whl (1.7 MB) 2023-09-15T00:28:42,812 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 10.5 MB/s eta 0:00:00 2023-09-15T00:28:43,192 Collecting hjson (from glypy) 2023-09-15T00:28:43,202 Downloading https://www.piwheels.org/simple/hjson/hjson-3.1.0-py3-none-any.whl (54 kB) 2023-09-15T00:28:43,219 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.0/54.0 kB 5.2 MB/s eta 0:00:00 2023-09-15T00:28:43,315 Collecting six (from glypy) 2023-09-15T00:28:43,328 Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB) 2023-09-15T00:28:43,361 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-15T00:28:43,397 Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB) 2023-09-15T00:28:45,937 Installing collected packages: hjson, wheel, six, setuptools, Cython, glypy 2023-09-15T00:28:46,169 Creating /tmp/pip-build-env-r6wi5mdq/overlay/local/bin 2023-09-15T00:28:46,171 changing mode of /tmp/pip-build-env-r6wi5mdq/overlay/local/bin/hjson to 755 2023-09-15T00:28:46,394 changing mode of /tmp/pip-build-env-r6wi5mdq/overlay/local/bin/wheel to 755 2023-09-15T00:28:51,925 changing mode of /tmp/pip-build-env-r6wi5mdq/overlay/local/bin/cygdb to 755 2023-09-15T00:28:51,928 changing mode of /tmp/pip-build-env-r6wi5mdq/overlay/local/bin/cython to 755 2023-09-15T00:28:51,930 changing mode of /tmp/pip-build-env-r6wi5mdq/overlay/local/bin/cythonize to 755 2023-09-15T00:28:53,292 Successfully installed Cython-3.0.2 glypy-1.0.3 hjson-3.1.0 setuptools-68.2.2 six-1.16.0 wheel-0.41.2 2023-09-15T00:28:53,898 Installing build dependencies: finished with status 'done' 2023-09-15T00:28:53,916 Getting requirements to build wheel: started 2023-09-15T00:28:53,917 Running command Getting requirements to build wheel 2023-09-15T00:28:58,245 /tmp/pip-build-env-r6wi5mdq/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-tz30mcql/glycopeptidepy_f8ae174653684eee97df5b92f1f3fa5e/glycopeptidepy/_c/algorithm.pyx 2023-09-15T00:28:58,245 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-15T00:28:59,429 /tmp/pip-build-env-r6wi5mdq/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-tz30mcql/glycopeptidepy_f8ae174653684eee97df5b92f1f3fa5e/glycopeptidepy/_c/collectiontools.pxd 2023-09-15T00:28:59,430 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-15T00:29:01,287 /tmp/pip-build-env-r6wi5mdq/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-tz30mcql/glycopeptidepy_f8ae174653684eee97df5b92f1f3fa5e/glycopeptidepy/_c/count_table.pxd 2023-09-15T00:29:01,288 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-15T00:29:02,742 warning: glycopeptidepy/_c/count_table.pyx:15:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-15T00:29:02,760 warning: glycopeptidepy/_c/count_table.pyx:102:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-15T00:29:02,785 warning: glycopeptidepy/_c/count_table.pyx:184:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-15T00:29:02,788 warning: glycopeptidepy/_c/count_table.pyx:195:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-15T00:29:02,962 Error compiling Cython file: 2023-09-15T00:29:02,962 ------------------------------------------------------------ 2023-09-15T00:29:02,963 ... 2023-09-15T00:29:02,963 pytable[int(12)] = 11 2023-09-15T00:29:02,964 pytable[255.2] = 99 2023-09-15T00:29:02,964 assert len(pytable) == 2 2023-09-15T00:29:02,965 del pytable 2023-09-15T00:29:02,966 pytable = CountTable._create() 2023-09-15T00:29:02,967 print pytable 2023-09-15T00:29:02,967 ^ 2023-09-15T00:29:02,968 ------------------------------------------------------------ 2023-09-15T00:29:02,969 glycopeptidepy/_c/count_table.pyx:952:10: Syntax error in simple statement list 2023-09-15T00:29:03,094 Compiling glycopeptidepy/_c/collectiontools.pyx because it changed. 2023-09-15T00:29:03,094 Compiling glycopeptidepy/_c/count_table.pyx because it changed. 2023-09-15T00:29:03,095 Compiling glycopeptidepy/_c/parser.pyx because it changed. 2023-09-15T00:29:03,096 Compiling glycopeptidepy/_c/structure/base.pyx because it changed. 2023-09-15T00:29:03,097 Compiling glycopeptidepy/_c/structure/fragment.pyx because it changed. 2023-09-15T00:29:03,097 Compiling glycopeptidepy/_c/structure/constants.pyx because it changed. 2023-09-15T00:29:03,098 Compiling glycopeptidepy/_c/structure/glycan.pyx because it changed. 2023-09-15T00:29:03,099 Compiling glycopeptidepy/_c/structure/sequence_methods.pyx because it changed. 2023-09-15T00:29:03,100 Compiling glycopeptidepy/_c/structure/modification/rule.pyx because it changed. 2023-09-15T00:29:03,100 Compiling glycopeptidepy/_c/structure/modification/modification.pyx because it changed. 2023-09-15T00:29:03,101 Compiling glycopeptidepy/_c/structure/modification/source.pyx because it changed. 2023-09-15T00:29:03,101 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it changed. 2023-09-15T00:29:03,102 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it changed. 2023-09-15T00:29:03,102 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it changed. 2023-09-15T00:29:03,103 Compiling glycopeptidepy/_c/algorithm.pyx because it changed. 2023-09-15T00:29:03,103 [ 1/15] Cythonizing glycopeptidepy/_c/algorithm.pyx 2023-09-15T00:29:03,104 [ 2/15] Cythonizing glycopeptidepy/_c/collectiontools.pyx 2023-09-15T00:29:03,104 [ 3/15] Cythonizing glycopeptidepy/_c/count_table.pyx 2023-09-15T00:29:03,105 running egg_info 2023-09-15T00:29:03,105 writing glycopeptidepy.egg-info/PKG-INFO 2023-09-15T00:29:03,107 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2023-09-15T00:29:03,108 writing requirements to glycopeptidepy.egg-info/requires.txt 2023-09-15T00:29:03,110 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2023-09-15T00:29:03,150 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-15T00:29:03,158 reading manifest template 'MANIFEST.in' 2023-09-15T00:29:03,159 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-15T00:29:03,160 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-15T00:29:03,354 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-15T00:29:03,357 *************************************************************************** 2023-09-15T00:29:03,358 WARNING: The C extension could not be compiled, speedups are not enabled. 2023-09-15T00:29:03,359 Plain-Python build succeeded. 2023-09-15T00:29:03,360 *************************************************************************** 2023-09-15T00:29:03,643 Getting requirements to build wheel: finished with status 'done' 2023-09-15T00:29:03,653 Created temporary directory: /tmp/pip-modern-metadata-2gws76l3 2023-09-15T00:29:03,655 Preparing metadata (pyproject.toml): started 2023-09-15T00:29:03,656 Running command Preparing metadata (pyproject.toml) 2023-09-15T00:29:07,459 /tmp/pip-build-env-r6wi5mdq/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-tz30mcql/glycopeptidepy_f8ae174653684eee97df5b92f1f3fa5e/glycopeptidepy/_c/count_table.pxd 2023-09-15T00:29:07,459 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-15T00:29:08,989 warning: glycopeptidepy/_c/count_table.pyx:15:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-15T00:29:09,006 warning: glycopeptidepy/_c/count_table.pyx:102:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-15T00:29:09,027 warning: glycopeptidepy/_c/count_table.pyx:184:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-15T00:29:09,029 warning: glycopeptidepy/_c/count_table.pyx:195:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-15T00:29:09,207 Error compiling Cython file: 2023-09-15T00:29:09,207 ------------------------------------------------------------ 2023-09-15T00:29:09,207 ... 2023-09-15T00:29:09,208 pytable[int(12)] = 11 2023-09-15T00:29:09,208 pytable[255.2] = 99 2023-09-15T00:29:09,209 assert len(pytable) == 2 2023-09-15T00:29:09,209 del pytable 2023-09-15T00:29:09,209 pytable = CountTable._create() 2023-09-15T00:29:09,210 print pytable 2023-09-15T00:29:09,210 ^ 2023-09-15T00:29:09,211 ------------------------------------------------------------ 2023-09-15T00:29:09,212 glycopeptidepy/_c/count_table.pyx:952:10: Syntax error in simple statement list 2023-09-15T00:29:09,260 Compiling glycopeptidepy/_c/count_table.pyx because it changed. 2023-09-15T00:29:09,261 Compiling glycopeptidepy/_c/parser.pyx because it changed. 2023-09-15T00:29:09,261 Compiling glycopeptidepy/_c/structure/base.pyx because it changed. 2023-09-15T00:29:09,262 Compiling glycopeptidepy/_c/structure/fragment.pyx because it changed. 2023-09-15T00:29:09,262 Compiling glycopeptidepy/_c/structure/constants.pyx because it changed. 2023-09-15T00:29:09,263 Compiling glycopeptidepy/_c/structure/glycan.pyx because it changed. 2023-09-15T00:29:09,263 Compiling glycopeptidepy/_c/structure/sequence_methods.pyx because it changed. 2023-09-15T00:29:09,264 Compiling glycopeptidepy/_c/structure/modification/rule.pyx because it changed. 2023-09-15T00:29:09,264 Compiling glycopeptidepy/_c/structure/modification/modification.pyx because it changed. 2023-09-15T00:29:09,265 Compiling glycopeptidepy/_c/structure/modification/source.pyx because it changed. 2023-09-15T00:29:09,265 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it changed. 2023-09-15T00:29:09,266 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it changed. 2023-09-15T00:29:09,266 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it changed. 2023-09-15T00:29:09,267 [ 1/13] Cythonizing glycopeptidepy/_c/count_table.pyx 2023-09-15T00:29:09,267 running dist_info 2023-09-15T00:29:09,281 creating /tmp/pip-modern-metadata-2gws76l3/glycopeptidepy.egg-info 2023-09-15T00:29:09,286 writing /tmp/pip-modern-metadata-2gws76l3/glycopeptidepy.egg-info/PKG-INFO 2023-09-15T00:29:09,290 writing dependency_links to /tmp/pip-modern-metadata-2gws76l3/glycopeptidepy.egg-info/dependency_links.txt 2023-09-15T00:29:09,292 writing requirements to /tmp/pip-modern-metadata-2gws76l3/glycopeptidepy.egg-info/requires.txt 2023-09-15T00:29:09,293 writing top-level names to /tmp/pip-modern-metadata-2gws76l3/glycopeptidepy.egg-info/top_level.txt 2023-09-15T00:29:09,294 writing manifest file '/tmp/pip-modern-metadata-2gws76l3/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-15T00:29:09,322 reading manifest file '/tmp/pip-modern-metadata-2gws76l3/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-15T00:29:09,324 reading manifest template 'MANIFEST.in' 2023-09-15T00:29:09,325 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-15T00:29:09,326 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-15T00:29:09,520 writing manifest file '/tmp/pip-modern-metadata-2gws76l3/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-15T00:29:09,522 creating '/tmp/pip-modern-metadata-2gws76l3/glycopeptidepy-0.0.12.dist-info' 2023-09-15T00:29:09,599 *************************************************************************** 2023-09-15T00:29:09,600 WARNING: The C extension could not be compiled, speedups are not enabled. 2023-09-15T00:29:09,601 Plain-Python build succeeded. 2023-09-15T00:29:09,602 *************************************************************************** 2023-09-15T00:29:09,866 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-15T00:29:09,870 Source in /tmp/pip-wheel-tz30mcql/glycopeptidepy_f8ae174653684eee97df5b92f1f3fa5e has version 0.0.12, which satisfies requirement glycopeptidepy==0.0.12 from https://files.pythonhosted.org/packages/2c/39/dc349656bb780f702d0d7cead9a14420bf8896b9aaf47d266bff3d0d3b20/glycopeptidepy-0.0.12.tar.gz 2023-09-15T00:29:09,871 Removed glycopeptidepy==0.0.12 from https://files.pythonhosted.org/packages/2c/39/dc349656bb780f702d0d7cead9a14420bf8896b9aaf47d266bff3d0d3b20/glycopeptidepy-0.0.12.tar.gz from build tracker '/tmp/pip-build-tracker-9efietk8' 2023-09-15T00:29:09,875 Created temporary directory: /tmp/pip-unpack-v2m_7o57 2023-09-15T00:29:09,876 Created temporary directory: /tmp/pip-unpack-9y0il5lf 2023-09-15T00:29:09,885 Building wheels for collected packages: glycopeptidepy 2023-09-15T00:29:09,889 Created temporary directory: /tmp/pip-wheel-7qmn_bej 2023-09-15T00:29:09,889 Destination directory: /tmp/pip-wheel-7qmn_bej 2023-09-15T00:29:09,892 Building wheel for glycopeptidepy (pyproject.toml): started 2023-09-15T00:29:09,893 Running command Building wheel for glycopeptidepy (pyproject.toml) 2023-09-15T00:29:13,655 /tmp/pip-build-env-r6wi5mdq/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-tz30mcql/glycopeptidepy_f8ae174653684eee97df5b92f1f3fa5e/glycopeptidepy/_c/count_table.pxd 2023-09-15T00:29:13,655 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-15T00:29:15,199 warning: glycopeptidepy/_c/count_table.pyx:15:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-15T00:29:15,217 warning: glycopeptidepy/_c/count_table.pyx:102:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-15T00:29:15,237 warning: glycopeptidepy/_c/count_table.pyx:184:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-15T00:29:15,239 warning: glycopeptidepy/_c/count_table.pyx:195:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-15T00:29:15,416 Error compiling Cython file: 2023-09-15T00:29:15,417 ------------------------------------------------------------ 2023-09-15T00:29:15,417 ... 2023-09-15T00:29:15,418 pytable[int(12)] = 11 2023-09-15T00:29:15,418 pytable[255.2] = 99 2023-09-15T00:29:15,419 assert len(pytable) == 2 2023-09-15T00:29:15,419 del pytable 2023-09-15T00:29:15,420 pytable = CountTable._create() 2023-09-15T00:29:15,420 print pytable 2023-09-15T00:29:15,421 ^ 2023-09-15T00:29:15,421 ------------------------------------------------------------ 2023-09-15T00:29:15,422 glycopeptidepy/_c/count_table.pyx:952:10: Syntax error in simple statement list 2023-09-15T00:29:15,517 Compiling glycopeptidepy/_c/count_table.pyx because it changed. 2023-09-15T00:29:15,518 Compiling glycopeptidepy/_c/parser.pyx because it changed. 2023-09-15T00:29:15,518 Compiling glycopeptidepy/_c/structure/base.pyx because it changed. 2023-09-15T00:29:15,519 Compiling glycopeptidepy/_c/structure/fragment.pyx because it changed. 2023-09-15T00:29:15,520 Compiling glycopeptidepy/_c/structure/constants.pyx because it changed. 2023-09-15T00:29:15,520 Compiling glycopeptidepy/_c/structure/glycan.pyx because it changed. 2023-09-15T00:29:15,521 Compiling glycopeptidepy/_c/structure/sequence_methods.pyx because it changed. 2023-09-15T00:29:15,521 Compiling glycopeptidepy/_c/structure/modification/rule.pyx because it changed. 2023-09-15T00:29:15,521 Compiling glycopeptidepy/_c/structure/modification/modification.pyx because it changed. 2023-09-15T00:29:15,522 Compiling glycopeptidepy/_c/structure/modification/source.pyx because it changed. 2023-09-15T00:29:15,522 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it changed. 2023-09-15T00:29:15,523 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it changed. 2023-09-15T00:29:15,523 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it changed. 2023-09-15T00:29:15,524 [ 1/13] Cythonizing glycopeptidepy/_c/count_table.pyx 2023-09-15T00:29:15,524 running bdist_wheel 2023-09-15T00:29:15,552 running build 2023-09-15T00:29:15,552 running build_py 2023-09-15T00:29:15,561 creating build 2023-09-15T00:29:15,562 creating build/lib 2023-09-15T00:29:15,562 creating build/lib/glycopeptidepy 2023-09-15T00:29:15,563 copying glycopeptidepy/algorithm.py -> build/lib/glycopeptidepy 2023-09-15T00:29:15,566 copying glycopeptidepy/__init__.py -> build/lib/glycopeptidepy 2023-09-15T00:29:15,567 copying glycopeptidepy/enzyme.py -> build/lib/glycopeptidepy 2023-09-15T00:29:15,569 copying glycopeptidepy/version.py -> build/lib/glycopeptidepy 2023-09-15T00:29:15,571 creating build/lib/glycopeptidepy/utils 2023-09-15T00:29:15,572 copying glycopeptidepy/utils/__init__.py -> build/lib/glycopeptidepy/utils 2023-09-15T00:29:15,574 copying glycopeptidepy/utils/memoize.py -> build/lib/glycopeptidepy/utils 2023-09-15T00:29:15,576 copying glycopeptidepy/utils/intervals.py -> build/lib/glycopeptidepy/utils 2023-09-15T00:29:15,580 copying glycopeptidepy/utils/collectiontools.py -> build/lib/glycopeptidepy/utils 2023-09-15T00:29:15,582 copying glycopeptidepy/utils/iterators.py -> build/lib/glycopeptidepy/utils 2023-09-15T00:29:15,583 copying glycopeptidepy/utils/sequence_tree.py -> build/lib/glycopeptidepy/utils 2023-09-15T00:29:15,586 creating build/lib/glycopeptidepy/_c 2023-09-15T00:29:15,587 copying glycopeptidepy/_c/__init__.py -> build/lib/glycopeptidepy/_c 2023-09-15T00:29:15,589 copying glycopeptidepy/_c/cythonize.py -> build/lib/glycopeptidepy/_c 2023-09-15T00:29:15,592 creating build/lib/glycopeptidepy/structure 2023-09-15T00:29:15,592 copying glycopeptidepy/structure/base.py -> build/lib/glycopeptidepy/structure 2023-09-15T00:29:15,594 copying glycopeptidepy/structure/__init__.py -> build/lib/glycopeptidepy/structure 2023-09-15T00:29:15,596 copying glycopeptidepy/structure/sequence_composition.py -> build/lib/glycopeptidepy/structure 2023-09-15T00:29:15,599 copying glycopeptidepy/structure/terminal_group.py -> build/lib/glycopeptidepy/structure 2023-09-15T00:29:15,601 copying glycopeptidepy/structure/constants.py -> build/lib/glycopeptidepy/structure 2023-09-15T00:29:15,603 copying glycopeptidepy/structure/glycan.py -> build/lib/glycopeptidepy/structure 2023-09-15T00:29:15,607 copying glycopeptidepy/structure/residue.py -> build/lib/glycopeptidepy/structure 2023-09-15T00:29:15,610 copying glycopeptidepy/structure/fragment.py -> build/lib/glycopeptidepy/structure 2023-09-15T00:29:15,615 copying glycopeptidepy/structure/parser.py -> build/lib/glycopeptidepy/structure 2023-09-15T00:29:15,620 copying glycopeptidepy/structure/composition.py -> build/lib/glycopeptidepy/structure 2023-09-15T00:29:15,625 creating build/lib/glycopeptidepy/io 2023-09-15T00:29:15,628 copying glycopeptidepy/io/annotation.py -> build/lib/glycopeptidepy/io 2023-09-15T00:29:15,634 copying glycopeptidepy/io/__init__.py -> build/lib/glycopeptidepy/io 2023-09-15T00:29:15,639 copying glycopeptidepy/io/utils.py -> build/lib/glycopeptidepy/io 2023-09-15T00:29:15,645 copying glycopeptidepy/io/nextprot.py -> build/lib/glycopeptidepy/io 2023-09-15T00:29:15,653 copying glycopeptidepy/io/fasta.py -> build/lib/glycopeptidepy/io 2023-09-15T00:29:15,663 copying glycopeptidepy/io/uniprot.py -> build/lib/glycopeptidepy/io 2023-09-15T00:29:15,677 creating build/lib/glycopeptidepy/test 2023-09-15T00:29:15,681 copying glycopeptidepy/test/test_fragmentation_strategy.py -> build/lib/glycopeptidepy/test 2023-09-15T00:29:15,692 copying glycopeptidepy/test/test_enzyme.py -> build/lib/glycopeptidepy/test 2023-09-15T00:29:15,700 copying glycopeptidepy/test/__init__.py -> build/lib/glycopeptidepy/test 2023-09-15T00:29:15,702 copying glycopeptidepy/test/common.py -> build/lib/glycopeptidepy/test 2023-09-15T00:29:15,704 copying glycopeptidepy/test/test_intervals.py -> build/lib/glycopeptidepy/test 2023-09-15T00:29:15,705 copying glycopeptidepy/test/test_fragment.py -> build/lib/glycopeptidepy/test 2023-09-15T00:29:15,707 copying glycopeptidepy/test/test_residue.py -> build/lib/glycopeptidepy/test 2023-09-15T00:29:15,708 copying glycopeptidepy/test/test_fasta.py -> build/lib/glycopeptidepy/test 2023-09-15T00:29:15,710 copying glycopeptidepy/test/test_uniprot.py -> build/lib/glycopeptidepy/test 2023-09-15T00:29:15,712 copying glycopeptidepy/test/test_modification.py -> build/lib/glycopeptidepy/test 2023-09-15T00:29:15,714 copying glycopeptidepy/test/test_sequence.py -> build/lib/glycopeptidepy/test 2023-09-15T00:29:15,715 copying glycopeptidepy/test/test_sequence_composition.py -> build/lib/glycopeptidepy/test 2023-09-15T00:29:15,717 copying glycopeptidepy/test/test_utils.py -> build/lib/glycopeptidepy/test 2023-09-15T00:29:15,719 copying glycopeptidepy/test/test_algorithms.py -> build/lib/glycopeptidepy/test 2023-09-15T00:29:15,721 creating build/lib/glycopeptidepy/_c/structure 2023-09-15T00:29:15,722 copying glycopeptidepy/_c/structure/__init__.py -> build/lib/glycopeptidepy/_c/structure 2023-09-15T00:29:15,724 creating build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:15,725 copying glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:15,727 creating build/lib/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:15,728 copying glycopeptidepy/_c/structure/modification/__init__.py -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:15,730 creating build/lib/glycopeptidepy/structure/sequence 2023-09-15T00:29:15,731 copying glycopeptidepy/structure/sequence/base.py -> build/lib/glycopeptidepy/structure/sequence 2023-09-15T00:29:15,733 copying glycopeptidepy/structure/sequence/implementation.py -> build/lib/glycopeptidepy/structure/sequence 2023-09-15T00:29:15,735 copying glycopeptidepy/structure/sequence/__init__.py -> build/lib/glycopeptidepy/structure/sequence 2023-09-15T00:29:15,737 copying glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/lib/glycopeptidepy/structure/sequence 2023-09-15T00:29:15,739 copying glycopeptidepy/structure/sequence/mutable_sequence.py -> build/lib/glycopeptidepy/structure/sequence 2023-09-15T00:29:15,741 creating build/lib/glycopeptidepy/structure/fragmentation_strategy 2023-09-15T00:29:15,742 copying glycopeptidepy/structure/fragmentation_strategy/base.py -> build/lib/glycopeptidepy/structure/fragmentation_strategy 2023-09-15T00:29:15,744 copying glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/lib/glycopeptidepy/structure/fragmentation_strategy 2023-09-15T00:29:15,746 copying glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/lib/glycopeptidepy/structure/fragmentation_strategy 2023-09-15T00:29:15,749 copying glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/lib/glycopeptidepy/structure/fragmentation_strategy 2023-09-15T00:29:15,752 creating build/lib/glycopeptidepy/structure/modification 2023-09-15T00:29:15,753 copying glycopeptidepy/structure/modification/glycosylation.py -> build/lib/glycopeptidepy/structure/modification 2023-09-15T00:29:15,756 copying glycopeptidepy/structure/modification/__init__.py -> build/lib/glycopeptidepy/structure/modification 2023-09-15T00:29:15,758 copying glycopeptidepy/structure/modification/source.py -> build/lib/glycopeptidepy/structure/modification 2023-09-15T00:29:15,760 copying glycopeptidepy/structure/modification/modification.py -> build/lib/glycopeptidepy/structure/modification 2023-09-15T00:29:15,762 copying glycopeptidepy/structure/modification/utils.py -> build/lib/glycopeptidepy/structure/modification 2023-09-15T00:29:15,764 copying glycopeptidepy/structure/modification/rule.py -> build/lib/glycopeptidepy/structure/modification 2023-09-15T00:29:15,766 copying glycopeptidepy/structure/modification/target.py -> build/lib/glycopeptidepy/structure/modification 2023-09-15T00:29:15,768 copying glycopeptidepy/structure/modification/descriptors.py -> build/lib/glycopeptidepy/structure/modification 2023-09-15T00:29:15,770 creating build/lib/glycopeptidepy/structure/modification/data 2023-09-15T00:29:15,771 copying glycopeptidepy/structure/modification/data/__init__.py -> build/lib/glycopeptidepy/structure/modification/data 2023-09-15T00:29:15,772 copying glycopeptidepy/structure/modification/data/patch_unimod.py -> build/lib/glycopeptidepy/structure/modification/data 2023-09-15T00:29:15,774 copying glycopeptidepy/structure/modification/data/unimod.py -> build/lib/glycopeptidepy/structure/modification/data 2023-09-15T00:29:15,777 creating build/lib/glycopeptidepy/io/cv 2023-09-15T00:29:15,778 copying glycopeptidepy/io/cv/__init__.py -> build/lib/glycopeptidepy/io/cv 2023-09-15T00:29:15,779 copying glycopeptidepy/io/cv/uniprot_ptm.py -> build/lib/glycopeptidepy/io/cv 2023-09-15T00:29:15,781 copying glycopeptidepy/io/cv/term.py -> build/lib/glycopeptidepy/io/cv 2023-09-15T00:29:15,783 copying glycopeptidepy/io/cv/peff.py -> build/lib/glycopeptidepy/io/cv 2023-09-15T00:29:15,785 running egg_info 2023-09-15T00:29:15,791 writing glycopeptidepy.egg-info/PKG-INFO 2023-09-15T00:29:15,793 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2023-09-15T00:29:15,795 writing requirements to glycopeptidepy.egg-info/requires.txt 2023-09-15T00:29:15,796 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2023-09-15T00:29:15,812 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-15T00:29:15,816 reading manifest template 'MANIFEST.in' 2023-09-15T00:29:15,816 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-15T00:29:15,817 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-15T00:29:15,988 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-15T00:29:15,995 copying glycopeptidepy/_c/algorithm.c -> build/lib/glycopeptidepy/_c 2023-09-15T00:29:16,011 copying glycopeptidepy/_c/algorithm.pyx -> build/lib/glycopeptidepy/_c 2023-09-15T00:29:16,013 copying glycopeptidepy/_c/collectiontools.c -> build/lib/glycopeptidepy/_c 2023-09-15T00:29:16,026 copying glycopeptidepy/_c/collectiontools.pxd -> build/lib/glycopeptidepy/_c 2023-09-15T00:29:16,031 copying glycopeptidepy/_c/collectiontools.pyx -> build/lib/glycopeptidepy/_c 2023-09-15T00:29:16,033 copying glycopeptidepy/_c/compat.h -> build/lib/glycopeptidepy/_c 2023-09-15T00:29:16,036 copying glycopeptidepy/_c/compat.pxd -> build/lib/glycopeptidepy/_c 2023-09-15T00:29:16,038 copying glycopeptidepy/_c/count_table.c -> build/lib/glycopeptidepy/_c 2023-09-15T00:29:16,040 copying glycopeptidepy/_c/count_table.pxd -> build/lib/glycopeptidepy/_c 2023-09-15T00:29:16,041 copying glycopeptidepy/_c/count_table.pyx -> build/lib/glycopeptidepy/_c 2023-09-15T00:29:16,044 copying glycopeptidepy/_c/parser.c -> build/lib/glycopeptidepy/_c 2023-09-15T00:29:16,054 copying glycopeptidepy/_c/parser.pxd -> build/lib/glycopeptidepy/_c 2023-09-15T00:29:16,056 copying glycopeptidepy/_c/parser.pyx -> build/lib/glycopeptidepy/_c 2023-09-15T00:29:16,059 copying glycopeptidepy/_c/structure/base.c -> build/lib/glycopeptidepy/_c/structure 2023-09-15T00:29:16,077 copying glycopeptidepy/_c/structure/base.pxd -> build/lib/glycopeptidepy/_c/structure 2023-09-15T00:29:16,079 copying glycopeptidepy/_c/structure/base.pyx -> build/lib/glycopeptidepy/_c/structure 2023-09-15T00:29:16,082 copying glycopeptidepy/_c/structure/constants.c -> build/lib/glycopeptidepy/_c/structure 2023-09-15T00:29:16,090 copying glycopeptidepy/_c/structure/constants.pxd -> build/lib/glycopeptidepy/_c/structure 2023-09-15T00:29:16,092 copying glycopeptidepy/_c/structure/constants.pyx -> build/lib/glycopeptidepy/_c/structure 2023-09-15T00:29:16,093 copying glycopeptidepy/_c/structure/fragment.c -> build/lib/glycopeptidepy/_c/structure 2023-09-15T00:29:16,118 copying glycopeptidepy/_c/structure/fragment.pxd -> build/lib/glycopeptidepy/_c/structure 2023-09-15T00:29:16,121 copying glycopeptidepy/_c/structure/fragment.pyx -> build/lib/glycopeptidepy/_c/structure 2023-09-15T00:29:16,124 copying glycopeptidepy/_c/structure/glycan.c -> build/lib/glycopeptidepy/_c/structure 2023-09-15T00:29:16,138 copying glycopeptidepy/_c/structure/glycan.pxd -> build/lib/glycopeptidepy/_c/structure 2023-09-15T00:29:16,140 copying glycopeptidepy/_c/structure/glycan.pyx -> build/lib/glycopeptidepy/_c/structure 2023-09-15T00:29:16,143 copying glycopeptidepy/_c/structure/sequence_methods.c -> build/lib/glycopeptidepy/_c/structure 2023-09-15T00:29:16,157 copying glycopeptidepy/_c/structure/sequence_methods.pxd -> build/lib/glycopeptidepy/_c/structure 2023-09-15T00:29:16,163 copying glycopeptidepy/_c/structure/sequence_methods.pyx -> build/lib/glycopeptidepy/_c/structure 2023-09-15T00:29:16,166 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,175 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,177 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,179 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,206 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,208 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,211 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,230 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,232 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,235 copying glycopeptidepy/_c/structure/modification/modification.c -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,243 copying glycopeptidepy/_c/structure/modification/modification.pxd -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,245 copying glycopeptidepy/_c/structure/modification/modification.pyx -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,248 copying glycopeptidepy/_c/structure/modification/rule.c -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,262 copying glycopeptidepy/_c/structure/modification/rule.pxd -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,264 copying glycopeptidepy/_c/structure/modification/rule.pyx -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,268 copying glycopeptidepy/_c/structure/modification/source.c -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,277 copying glycopeptidepy/_c/structure/modification/source.pxd -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,280 copying glycopeptidepy/_c/structure/modification/source.pyx -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,282 copying glycopeptidepy/_c/structure/modification/target.pyx -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,284 copying glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/lib/glycopeptidepy/structure/modification/data 2023-09-15T00:29:16,287 copying glycopeptidepy/structure/modification/data/unimod.json -> build/lib/glycopeptidepy/structure/modification/data 2023-09-15T00:29:16,365 installing to build/bdist.linux-armv7l/wheel 2023-09-15T00:29:16,366 running install 2023-09-15T00:29:16,393 running install_lib 2023-09-15T00:29:16,401 creating build/bdist.linux-armv7l 2023-09-15T00:29:16,402 creating build/bdist.linux-armv7l/wheel 2023-09-15T00:29:16,403 creating build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-15T00:29:16,405 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-15T00:29:16,406 copying build/lib/glycopeptidepy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-15T00:29:16,408 copying build/lib/glycopeptidepy/utils/memoize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-15T00:29:16,409 copying build/lib/glycopeptidepy/utils/intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-15T00:29:16,412 copying build/lib/glycopeptidepy/utils/collectiontools.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-15T00:29:16,414 copying build/lib/glycopeptidepy/utils/iterators.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-15T00:29:16,415 copying build/lib/glycopeptidepy/utils/sequence_tree.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-15T00:29:16,417 copying build/lib/glycopeptidepy/algorithm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-15T00:29:16,421 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-15T00:29:16,422 copying build/lib/glycopeptidepy/_c/count_table.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-15T00:29:16,424 copying build/lib/glycopeptidepy/_c/collectiontools.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-15T00:29:16,426 copying build/lib/glycopeptidepy/_c/parser.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-15T00:29:16,428 copying build/lib/glycopeptidepy/_c/parser.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-15T00:29:16,430 copying build/lib/glycopeptidepy/_c/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-15T00:29:16,432 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-15T00:29:16,433 copying build/lib/glycopeptidepy/_c/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-15T00:29:16,435 copying build/lib/glycopeptidepy/_c/structure/constants.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-15T00:29:16,441 copying build/lib/glycopeptidepy/_c/structure/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-15T00:29:16,443 copying build/lib/glycopeptidepy/_c/structure/fragment.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-15T00:29:16,465 copying build/lib/glycopeptidepy/_c/structure/fragment.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-15T00:29:16,468 copying build/lib/glycopeptidepy/_c/structure/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-15T00:29:16,471 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,472 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,474 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,476 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,478 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,480 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,483 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,499 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,500 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,503 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,530 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-15T00:29:16,549 copying build/lib/glycopeptidepy/_c/structure/sequence_methods.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-15T00:29:16,564 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,565 copying build/lib/glycopeptidepy/_c/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,567 copying build/lib/glycopeptidepy/_c/structure/modification/target.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,569 copying build/lib/glycopeptidepy/_c/structure/modification/modification.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,571 copying build/lib/glycopeptidepy/_c/structure/modification/source.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,573 copying build/lib/glycopeptidepy/_c/structure/modification/source.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,583 copying build/lib/glycopeptidepy/_c/structure/modification/rule.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,585 copying build/lib/glycopeptidepy/_c/structure/modification/rule.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,600 copying build/lib/glycopeptidepy/_c/structure/modification/source.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,603 copying build/lib/glycopeptidepy/_c/structure/modification/modification.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,611 copying build/lib/glycopeptidepy/_c/structure/modification/rule.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,613 copying build/lib/glycopeptidepy/_c/structure/modification/modification.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-15T00:29:16,615 copying build/lib/glycopeptidepy/_c/structure/fragment.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-15T00:29:16,617 copying build/lib/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-15T00:29:16,620 copying build/lib/glycopeptidepy/_c/structure/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-15T00:29:16,622 copying build/lib/glycopeptidepy/_c/structure/constants.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-15T00:29:16,624 copying build/lib/glycopeptidepy/_c/structure/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-15T00:29:16,643 copying build/lib/glycopeptidepy/_c/structure/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-15T00:29:16,645 copying build/lib/glycopeptidepy/_c/structure/constants.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-15T00:29:16,647 copying build/lib/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-15T00:29:16,648 copying build/lib/glycopeptidepy/_c/structure/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-15T00:29:16,659 copying build/lib/glycopeptidepy/_c/compat.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-15T00:29:16,661 copying build/lib/glycopeptidepy/_c/parser.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-15T00:29:16,671 copying build/lib/glycopeptidepy/_c/collectiontools.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-15T00:29:16,673 copying build/lib/glycopeptidepy/_c/algorithm.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-15T00:29:16,675 copying build/lib/glycopeptidepy/_c/cythonize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-15T00:29:16,677 copying build/lib/glycopeptidepy/_c/count_table.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-15T00:29:16,680 copying build/lib/glycopeptidepy/_c/count_table.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-15T00:29:16,681 copying build/lib/glycopeptidepy/_c/compat.h -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-15T00:29:16,683 copying build/lib/glycopeptidepy/_c/algorithm.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-15T00:29:16,701 copying build/lib/glycopeptidepy/_c/collectiontools.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-15T00:29:16,713 copying build/lib/glycopeptidepy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-15T00:29:16,715 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-15T00:29:16,716 copying build/lib/glycopeptidepy/structure/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-15T00:29:16,718 copying build/lib/glycopeptidepy/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-15T00:29:16,720 copying build/lib/glycopeptidepy/structure/sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-15T00:29:16,722 copying build/lib/glycopeptidepy/structure/terminal_group.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-15T00:29:16,724 copying build/lib/glycopeptidepy/structure/constants.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-15T00:29:16,726 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-15T00:29:16,727 copying build/lib/glycopeptidepy/structure/sequence/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-15T00:29:16,729 copying build/lib/glycopeptidepy/structure/sequence/implementation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-15T00:29:16,731 copying build/lib/glycopeptidepy/structure/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-15T00:29:16,733 copying build/lib/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-15T00:29:16,735 copying build/lib/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-15T00:29:16,738 copying build/lib/glycopeptidepy/structure/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-15T00:29:16,740 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-15T00:29:16,741 copying build/lib/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-15T00:29:16,743 copying build/lib/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-15T00:29:16,745 copying build/lib/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-15T00:29:16,747 copying build/lib/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-15T00:29:16,750 copying build/lib/glycopeptidepy/structure/residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-15T00:29:16,753 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-15T00:29:16,754 copying build/lib/glycopeptidepy/structure/modification/glycosylation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-15T00:29:16,756 copying build/lib/glycopeptidepy/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-15T00:29:16,758 copying build/lib/glycopeptidepy/structure/modification/source.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-15T00:29:16,760 copying build/lib/glycopeptidepy/structure/modification/modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-15T00:29:16,762 copying build/lib/glycopeptidepy/structure/modification/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-15T00:29:16,764 copying build/lib/glycopeptidepy/structure/modification/rule.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-15T00:29:16,767 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-15T00:29:16,768 copying build/lib/glycopeptidepy/structure/modification/data/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-15T00:29:16,770 copying build/lib/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-15T00:29:16,772 copying build/lib/glycopeptidepy/structure/modification/data/unimod.json -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-15T00:29:16,803 copying build/lib/glycopeptidepy/structure/modification/data/unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-15T00:29:16,806 copying build/lib/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-15T00:29:16,807 copying build/lib/glycopeptidepy/structure/modification/target.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-15T00:29:16,810 copying build/lib/glycopeptidepy/structure/modification/descriptors.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-15T00:29:16,812 copying build/lib/glycopeptidepy/structure/fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-15T00:29:16,815 copying build/lib/glycopeptidepy/structure/parser.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-15T00:29:16,817 copying build/lib/glycopeptidepy/structure/composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-15T00:29:16,819 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-15T00:29:16,820 copying build/lib/glycopeptidepy/io/annotation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-15T00:29:16,822 copying build/lib/glycopeptidepy/io/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-15T00:29:16,824 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-15T00:29:16,824 copying build/lib/glycopeptidepy/io/cv/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-15T00:29:16,826 copying build/lib/glycopeptidepy/io/cv/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-15T00:29:16,828 copying build/lib/glycopeptidepy/io/cv/term.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-15T00:29:16,830 copying build/lib/glycopeptidepy/io/cv/peff.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-15T00:29:16,832 copying build/lib/glycopeptidepy/io/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-15T00:29:16,834 copying build/lib/glycopeptidepy/io/nextprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-15T00:29:16,835 copying build/lib/glycopeptidepy/io/fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-15T00:29:16,838 copying build/lib/glycopeptidepy/io/uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-15T00:29:16,843 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-15T00:29:16,845 copying build/lib/glycopeptidepy/test/test_fragmentation_strategy.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-15T00:29:16,847 copying build/lib/glycopeptidepy/test/test_enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-15T00:29:16,848 copying build/lib/glycopeptidepy/test/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-15T00:29:16,850 copying build/lib/glycopeptidepy/test/common.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-15T00:29:16,852 copying build/lib/glycopeptidepy/test/test_intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-15T00:29:16,854 copying build/lib/glycopeptidepy/test/test_fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-15T00:29:16,856 copying build/lib/glycopeptidepy/test/test_residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-15T00:29:16,858 copying build/lib/glycopeptidepy/test/test_fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-15T00:29:16,860 copying build/lib/glycopeptidepy/test/test_uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-15T00:29:16,862 copying build/lib/glycopeptidepy/test/test_modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-15T00:29:16,864 copying build/lib/glycopeptidepy/test/test_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-15T00:29:16,866 copying build/lib/glycopeptidepy/test/test_sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-15T00:29:16,868 copying build/lib/glycopeptidepy/test/test_utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-15T00:29:16,870 copying build/lib/glycopeptidepy/test/test_algorithms.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-15T00:29:16,872 copying build/lib/glycopeptidepy/enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-15T00:29:16,874 copying build/lib/glycopeptidepy/version.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-15T00:29:16,875 running install_egg_info 2023-09-15T00:29:16,887 Copying glycopeptidepy.egg-info to build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.12-py3.11.egg-info 2023-09-15T00:29:16,899 running install_scripts 2023-09-15T00:29:16,910 creating build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.12.dist-info/WHEEL 2023-09-15T00:29:16,912 creating '/tmp/pip-wheel-7qmn_bej/.tmp-a_mgzbw0/glycopeptidepy-0.0.12-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-15T00:29:16,915 adding 'glycopeptidepy/__init__.py' 2023-09-15T00:29:16,917 adding 'glycopeptidepy/algorithm.py' 2023-09-15T00:29:16,919 adding 'glycopeptidepy/enzyme.py' 2023-09-15T00:29:16,920 adding 'glycopeptidepy/version.py' 2023-09-15T00:29:16,922 adding 'glycopeptidepy/_c/__init__.py' 2023-09-15T00:29:16,978 adding 'glycopeptidepy/_c/algorithm.c' 2023-09-15T00:29:16,985 adding 'glycopeptidepy/_c/algorithm.pyx' 2023-09-15T00:29:17,022 adding 'glycopeptidepy/_c/collectiontools.c' 2023-09-15T00:29:17,027 adding 'glycopeptidepy/_c/collectiontools.pxd' 2023-09-15T00:29:17,028 adding 'glycopeptidepy/_c/collectiontools.pyx' 2023-09-15T00:29:17,029 adding 'glycopeptidepy/_c/compat.h' 2023-09-15T00:29:17,030 adding 'glycopeptidepy/_c/compat.pxd' 2023-09-15T00:29:17,031 adding 'glycopeptidepy/_c/count_table.c' 2023-09-15T00:29:17,033 adding 'glycopeptidepy/_c/count_table.pxd' 2023-09-15T00:29:17,036 adding 'glycopeptidepy/_c/count_table.pyx' 2023-09-15T00:29:17,037 adding 'glycopeptidepy/_c/cythonize.py' 2023-09-15T00:29:17,070 adding 'glycopeptidepy/_c/parser.c' 2023-09-15T00:29:17,078 adding 'glycopeptidepy/_c/parser.pxd' 2023-09-15T00:29:17,080 adding 'glycopeptidepy/_c/parser.pyx' 2023-09-15T00:29:17,082 adding 'glycopeptidepy/_c/structure/__init__.py' 2023-09-15T00:29:17,161 adding 'glycopeptidepy/_c/structure/base.c' 2023-09-15T00:29:17,169 adding 'glycopeptidepy/_c/structure/base.pxd' 2023-09-15T00:29:17,171 adding 'glycopeptidepy/_c/structure/base.pyx' 2023-09-15T00:29:17,190 adding 'glycopeptidepy/_c/structure/constants.c' 2023-09-15T00:29:17,193 adding 'glycopeptidepy/_c/structure/constants.pxd' 2023-09-15T00:29:17,194 adding 'glycopeptidepy/_c/structure/constants.pyx' 2023-09-15T00:29:17,277 adding 'glycopeptidepy/_c/structure/fragment.c' 2023-09-15T00:29:17,289 adding 'glycopeptidepy/_c/structure/fragment.pxd' 2023-09-15T00:29:17,292 adding 'glycopeptidepy/_c/structure/fragment.pyx' 2023-09-15T00:29:17,332 adding 'glycopeptidepy/_c/structure/glycan.c' 2023-09-15T00:29:17,338 adding 'glycopeptidepy/_c/structure/glycan.pxd' 2023-09-15T00:29:17,340 adding 'glycopeptidepy/_c/structure/glycan.pyx' 2023-09-15T00:29:17,394 adding 'glycopeptidepy/_c/structure/sequence_methods.c' 2023-09-15T00:29:17,402 adding 'glycopeptidepy/_c/structure/sequence_methods.pxd' 2023-09-15T00:29:17,404 adding 'glycopeptidepy/_c/structure/sequence_methods.pyx' 2023-09-15T00:29:17,406 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py' 2023-09-15T00:29:17,433 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.c' 2023-09-15T00:29:17,437 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd' 2023-09-15T00:29:17,438 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx' 2023-09-15T00:29:17,522 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c' 2023-09-15T00:29:17,534 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd' 2023-09-15T00:29:17,537 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx' 2023-09-15T00:29:17,612 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c' 2023-09-15T00:29:17,623 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd' 2023-09-15T00:29:17,626 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx' 2023-09-15T00:29:17,627 adding 'glycopeptidepy/_c/structure/modification/__init__.py' 2023-09-15T00:29:17,652 adding 'glycopeptidepy/_c/structure/modification/modification.c' 2023-09-15T00:29:17,655 adding 'glycopeptidepy/_c/structure/modification/modification.pxd' 2023-09-15T00:29:17,657 adding 'glycopeptidepy/_c/structure/modification/modification.pyx' 2023-09-15T00:29:17,693 adding 'glycopeptidepy/_c/structure/modification/rule.c' 2023-09-15T00:29:17,699 adding 'glycopeptidepy/_c/structure/modification/rule.pxd' 2023-09-15T00:29:17,701 adding 'glycopeptidepy/_c/structure/modification/rule.pyx' 2023-09-15T00:29:17,726 adding 'glycopeptidepy/_c/structure/modification/source.c' 2023-09-15T00:29:17,730 adding 'glycopeptidepy/_c/structure/modification/source.pxd' 2023-09-15T00:29:17,732 adding 'glycopeptidepy/_c/structure/modification/source.pyx' 2023-09-15T00:29:17,733 adding 'glycopeptidepy/_c/structure/modification/target.pyx' 2023-09-15T00:29:17,735 adding 'glycopeptidepy/io/__init__.py' 2023-09-15T00:29:17,736 adding 'glycopeptidepy/io/annotation.py' 2023-09-15T00:29:17,740 adding 'glycopeptidepy/io/fasta.py' 2023-09-15T00:29:17,741 adding 'glycopeptidepy/io/nextprot.py' 2023-09-15T00:29:17,744 adding 'glycopeptidepy/io/uniprot.py' 2023-09-15T00:29:17,745 adding 'glycopeptidepy/io/utils.py' 2023-09-15T00:29:17,747 adding 'glycopeptidepy/io/cv/__init__.py' 2023-09-15T00:29:17,749 adding 'glycopeptidepy/io/cv/peff.py' 2023-09-15T00:29:17,750 adding 'glycopeptidepy/io/cv/term.py' 2023-09-15T00:29:17,752 adding 'glycopeptidepy/io/cv/uniprot_ptm.py' 2023-09-15T00:29:17,754 adding 'glycopeptidepy/structure/__init__.py' 2023-09-15T00:29:17,755 adding 'glycopeptidepy/structure/base.py' 2023-09-15T00:29:17,756 adding 'glycopeptidepy/structure/composition.py' 2023-09-15T00:29:17,757 adding 'glycopeptidepy/structure/constants.py' 2023-09-15T00:29:17,760 adding 'glycopeptidepy/structure/fragment.py' 2023-09-15T00:29:17,762 adding 'glycopeptidepy/structure/glycan.py' 2023-09-15T00:29:17,764 adding 'glycopeptidepy/structure/parser.py' 2023-09-15T00:29:17,765 adding 'glycopeptidepy/structure/residue.py' 2023-09-15T00:29:17,767 adding 'glycopeptidepy/structure/sequence_composition.py' 2023-09-15T00:29:17,769 adding 'glycopeptidepy/structure/terminal_group.py' 2023-09-15T00:29:17,770 adding 'glycopeptidepy/structure/fragmentation_strategy/__init__.py' 2023-09-15T00:29:17,772 adding 'glycopeptidepy/structure/fragmentation_strategy/base.py' 2023-09-15T00:29:17,776 adding 'glycopeptidepy/structure/fragmentation_strategy/glycan.py' 2023-09-15T00:29:17,779 adding 'glycopeptidepy/structure/fragmentation_strategy/peptide.py' 2023-09-15T00:29:17,781 adding 'glycopeptidepy/structure/modification/__init__.py' 2023-09-15T00:29:17,782 adding 'glycopeptidepy/structure/modification/descriptors.py' 2023-09-15T00:29:17,784 adding 'glycopeptidepy/structure/modification/glycosylation.py' 2023-09-15T00:29:17,786 adding 'glycopeptidepy/structure/modification/modification.py' 2023-09-15T00:29:17,789 adding 'glycopeptidepy/structure/modification/rule.py' 2023-09-15T00:29:17,792 adding 'glycopeptidepy/structure/modification/source.py' 2023-09-15T00:29:17,793 adding 'glycopeptidepy/structure/modification/target.py' 2023-09-15T00:29:17,795 adding 'glycopeptidepy/structure/modification/utils.py' 2023-09-15T00:29:17,797 adding 'glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv' 2023-09-15T00:29:17,798 adding 'glycopeptidepy/structure/modification/data/__init__.py' 2023-09-15T00:29:17,799 adding 'glycopeptidepy/structure/modification/data/patch_unimod.py' 2023-09-15T00:29:17,865 adding 'glycopeptidepy/structure/modification/data/unimod.json' 2023-09-15T00:29:17,882 adding 'glycopeptidepy/structure/modification/data/unimod.py' 2023-09-15T00:29:17,884 adding 'glycopeptidepy/structure/sequence/__init__.py' 2023-09-15T00:29:17,886 adding 'glycopeptidepy/structure/sequence/base.py' 2023-09-15T00:29:17,888 adding 'glycopeptidepy/structure/sequence/glycosylated_sequence.py' 2023-09-15T00:29:17,890 adding 'glycopeptidepy/structure/sequence/implementation.py' 2023-09-15T00:29:17,892 adding 'glycopeptidepy/structure/sequence/mutable_sequence.py' 2023-09-15T00:29:17,894 adding 'glycopeptidepy/test/__init__.py' 2023-09-15T00:29:17,895 adding 'glycopeptidepy/test/common.py' 2023-09-15T00:29:17,897 adding 'glycopeptidepy/test/test_algorithms.py' 2023-09-15T00:29:17,899 adding 'glycopeptidepy/test/test_enzyme.py' 2023-09-15T00:29:17,901 adding 'glycopeptidepy/test/test_fasta.py' 2023-09-15T00:29:17,902 adding 'glycopeptidepy/test/test_fragment.py' 2023-09-15T00:29:17,903 adding 'glycopeptidepy/test/test_fragmentation_strategy.py' 2023-09-15T00:29:17,905 adding 'glycopeptidepy/test/test_intervals.py' 2023-09-15T00:29:17,906 adding 'glycopeptidepy/test/test_modification.py' 2023-09-15T00:29:17,907 adding 'glycopeptidepy/test/test_residue.py' 2023-09-15T00:29:17,909 adding 'glycopeptidepy/test/test_sequence.py' 2023-09-15T00:29:17,911 adding 'glycopeptidepy/test/test_sequence_composition.py' 2023-09-15T00:29:17,912 adding 'glycopeptidepy/test/test_uniprot.py' 2023-09-15T00:29:17,913 adding 'glycopeptidepy/test/test_utils.py' 2023-09-15T00:29:17,915 adding 'glycopeptidepy/utils/__init__.py' 2023-09-15T00:29:17,916 adding 'glycopeptidepy/utils/collectiontools.py' 2023-09-15T00:29:17,918 adding 'glycopeptidepy/utils/intervals.py' 2023-09-15T00:29:17,920 adding 'glycopeptidepy/utils/iterators.py' 2023-09-15T00:29:17,921 adding 'glycopeptidepy/utils/memoize.py' 2023-09-15T00:29:17,922 adding 'glycopeptidepy/utils/sequence_tree.py' 2023-09-15T00:29:17,924 adding 'glycopeptidepy-0.0.12.dist-info/METADATA' 2023-09-15T00:29:17,925 adding 'glycopeptidepy-0.0.12.dist-info/WHEEL' 2023-09-15T00:29:17,926 adding 'glycopeptidepy-0.0.12.dist-info/top_level.txt' 2023-09-15T00:29:17,928 adding 'glycopeptidepy-0.0.12.dist-info/RECORD' 2023-09-15T00:29:17,961 removing build/bdist.linux-armv7l/wheel 2023-09-15T00:29:17,996 *************************************************************************** 2023-09-15T00:29:17,997 WARNING: The C extension could not be compiled, speedups are not enabled. 2023-09-15T00:29:17,998 Plain-Python build succeeded. 2023-09-15T00:29:17,999 *************************************************************************** 2023-09-15T00:29:18,267 Building wheel for glycopeptidepy (pyproject.toml): finished with status 'done' 2023-09-15T00:29:18,303 Created wheel for glycopeptidepy: filename=glycopeptidepy-0.0.12-py3-none-any.whl size=1343653 sha256=35eff2c51f7b2c81df7dae9b56e686c3d890480176055a778281ed9b56112268 2023-09-15T00:29:18,305 Stored in directory: /tmp/pip-ephem-wheel-cache-ke9nipuu/wheels/24/43/b6/707c4c4568fd35430c8a0277534b62f8793e2c47f55d7add46 2023-09-15T00:29:18,317 Successfully built glycopeptidepy 2023-09-15T00:29:18,349 Removed build tracker: '/tmp/pip-build-tracker-9efietk8'