2023-09-15T02:29:28,324 Created temporary directory: /tmp/pip-build-tracker-u9zem29k
2023-09-15T02:29:28,325 Initialized build tracking at /tmp/pip-build-tracker-u9zem29k
2023-09-15T02:29:28,325 Created build tracker: /tmp/pip-build-tracker-u9zem29k
2023-09-15T02:29:28,326 Entered build tracker: /tmp/pip-build-tracker-u9zem29k
2023-09-15T02:29:28,327 Created temporary directory: /tmp/pip-wheel-unawgq61
2023-09-15T02:29:28,330 Created temporary directory: /tmp/pip-ephem-wheel-cache-2x8rbc62
2023-09-15T02:29:28,352 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-15T02:29:28,356 2 location(s) to search for versions of unifrac:
2023-09-15T02:29:28,356 * https://pypi.org/simple/unifrac/
2023-09-15T02:29:28,356 * https://www.piwheels.org/simple/unifrac/
2023-09-15T02:29:28,357 Fetching project page and analyzing links: https://pypi.org/simple/unifrac/
2023-09-15T02:29:28,358 Getting page https://pypi.org/simple/unifrac/
2023-09-15T02:29:28,359 Found index url https://pypi.org/simple/
2023-09-15T02:29:28,575 Fetched page https://pypi.org/simple/unifrac/ as application/vnd.pypi.simple.v1+json
2023-09-15T02:29:28,576   Found link https://files.pythonhosted.org/packages/be/89/683b0925dadf0c63f015aba45e56d943a738caa70f736233e8654dc4a713/unifrac-0.10.0.tar.gz (from https://pypi.org/simple/unifrac/), version: 0.10.0
2023-09-15T02:29:28,577   Found link https://files.pythonhosted.org/packages/c4/fe/bf6d6113ab675272f6eb6e593d6842e4f2c074ee9152b6f4316a621462f7/unifrac-0.20.1.tar.gz (from https://pypi.org/simple/unifrac/), version: 0.20.1
2023-09-15T02:29:28,578   Found link https://files.pythonhosted.org/packages/ef/40/fcc8a73f40b27682661cad19dac3fbc0ed4f5cd3593d86939b2eb7309956/unifrac-0.20.3.tar.gz (from https://pypi.org/simple/unifrac/), version: 0.20.3
2023-09-15T02:29:28,578 Fetching project page and analyzing links: https://www.piwheels.org/simple/unifrac/
2023-09-15T02:29:28,579 Getting page https://www.piwheels.org/simple/unifrac/
2023-09-15T02:29:28,580 Found index url https://www.piwheels.org/simple/
2023-09-15T02:29:28,839 Fetched page https://www.piwheels.org/simple/unifrac/ as text/html
2023-09-15T02:29:28,840 Skipping link: not a file: https://www.piwheels.org/simple/unifrac/
2023-09-15T02:29:28,840 Skipping link: not a file: https://pypi.org/simple/unifrac/
2023-09-15T02:29:28,859 Given no hashes to check 1 links for project 'unifrac': discarding no candidates
2023-09-15T02:29:28,880 Collecting unifrac==0.20.3
2023-09-15T02:29:28,883   Created temporary directory: /tmp/pip-unpack-b_chxy_x
2023-09-15T02:29:29,123   Downloading unifrac-0.20.3.tar.gz (258 kB)
2023-09-15T02:29:29,391   Added unifrac==0.20.3 from https://files.pythonhosted.org/packages/ef/40/fcc8a73f40b27682661cad19dac3fbc0ed4f5cd3593d86939b2eb7309956/unifrac-0.20.3.tar.gz to build tracker '/tmp/pip-build-tracker-u9zem29k'
2023-09-15T02:29:29,393   Running setup.py (path:/tmp/pip-wheel-unawgq61/unifrac_e8b01fcbec4e4b1a820d77954cfe262a/setup.py) egg_info for package unifrac
2023-09-15T02:29:29,394   Created temporary directory: /tmp/pip-pip-egg-info-fp2o44ls
2023-09-15T02:29:29,395   Preparing metadata (setup.py): started
2023-09-15T02:29:29,396   Running command python setup.py egg_info
2023-09-15T02:29:30,040   Traceback (most recent call last):
2023-09-15T02:29:30,040     File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 23, in <module>
2023-09-15T02:29:30,041       from . import multiarray
2023-09-15T02:29:30,041     File "/usr/local/lib/python3.11/dist-packages/numpy/core/multiarray.py", line 10, in <module>
2023-09-15T02:29:30,042       from . import overrides
2023-09-15T02:29:30,043     File "/usr/local/lib/python3.11/dist-packages/numpy/core/overrides.py", line 8, in <module>
2023-09-15T02:29:30,043       from numpy.core._multiarray_umath import (
2023-09-15T02:29:30,044   ImportError: libopenblas.so.0: cannot open shared object file: No such file or directory

2023-09-15T02:29:30,046   During handling of the above exception, another exception occurred:

2023-09-15T02:29:30,048   Traceback (most recent call last):
2023-09-15T02:29:30,049     File "<string>", line 2, in <module>
2023-09-15T02:29:30,050     File "<pip-setuptools-caller>", line 34, in <module>
2023-09-15T02:29:30,050     File "/tmp/pip-wheel-unawgq61/unifrac_e8b01fcbec4e4b1a820d77954cfe262a/setup.py", line 11, in <module>
2023-09-15T02:29:30,051       import numpy as np
2023-09-15T02:29:30,052     File "/usr/local/lib/python3.11/dist-packages/numpy/__init__.py", line 139, in <module>
2023-09-15T02:29:30,053       from . import core
2023-09-15T02:29:30,053     File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 49, in <module>
2023-09-15T02:29:30,054       raise ImportError(msg)
2023-09-15T02:29:30,055   ImportError:

2023-09-15T02:29:30,056   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

2023-09-15T02:29:30,058   Importing the numpy C-extensions failed. This error can happen for
2023-09-15T02:29:30,058   many reasons, often due to issues with your setup or how NumPy was
2023-09-15T02:29:30,059   installed.

2023-09-15T02:29:30,060   We have compiled some common reasons and troubleshooting tips at:

2023-09-15T02:29:30,062       https://numpy.org/devdocs/user/troubleshooting-importerror.html

2023-09-15T02:29:30,063   Please note and check the following:

2023-09-15T02:29:30,065     * The Python version is: Python3.11 from "/usr/bin/python3"
2023-09-15T02:29:30,066     * The NumPy version is: "1.25.2"

2023-09-15T02:29:30,068   and make sure that they are the versions you expect.
2023-09-15T02:29:30,068   Please carefully study the documentation linked above for further help.

2023-09-15T02:29:30,070   Original error was: libopenblas.so.0: cannot open shared object file: No such file or directory

2023-09-15T02:29:30,131   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-09-15T02:29:30,144   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-09-15T02:29:30,144   exec(compile('"'"''"'"''"'"'
2023-09-15T02:29:30,144   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-15T02:29:30,144   #
2023-09-15T02:29:30,144   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-15T02:29:30,144   #   import from `distutils.core` to work with newer packaging standards.
2023-09-15T02:29:30,144   # - It provides a clear error message when setuptools is not installed.
2023-09-15T02:29:30,144   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-15T02:29:30,144   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-15T02:29:30,144   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-15T02:29:30,144   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-15T02:29:30,144   import os, sys, tokenize
2023-09-15T02:29:30,144   
2023-09-15T02:29:30,144   try:
2023-09-15T02:29:30,144       import setuptools
2023-09-15T02:29:30,144   except ImportError as error:
2023-09-15T02:29:30,144       print(
2023-09-15T02:29:30,144           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-15T02:29:30,144           "the build environment.",
2023-09-15T02:29:30,144           file=sys.stderr,
2023-09-15T02:29:30,144       )
2023-09-15T02:29:30,144       sys.exit(1)
2023-09-15T02:29:30,144   
2023-09-15T02:29:30,144   __file__ = %r
2023-09-15T02:29:30,144   sys.argv[0] = __file__
2023-09-15T02:29:30,144   
2023-09-15T02:29:30,144   if os.path.exists(__file__):
2023-09-15T02:29:30,144       filename = __file__
2023-09-15T02:29:30,144       with tokenize.open(__file__) as f:
2023-09-15T02:29:30,144           setup_py_code = f.read()
2023-09-15T02:29:30,144   else:
2023-09-15T02:29:30,144       filename = "<auto-generated setuptools caller>"
2023-09-15T02:29:30,144       setup_py_code = "from setuptools import setup; setup()"
2023-09-15T02:29:30,144   
2023-09-15T02:29:30,144   exec(compile(setup_py_code, filename, "exec"))
2023-09-15T02:29:30,144   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-unawgq61/unifrac_e8b01fcbec4e4b1a820d77954cfe262a/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-fp2o44ls[/]
2023-09-15T02:29:30,144   [bold magenta]cwd[/]: /tmp/pip-wheel-unawgq61/unifrac_e8b01fcbec4e4b1a820d77954cfe262a/
2023-09-15T02:29:30,145   Preparing metadata (setup.py): finished with status 'error'
2023-09-15T02:29:30,147 ERROR: [present-rich] metadata generation failed
2023-09-15T02:29:30,152 Exception information:
2023-09-15T02:29:30,152 Traceback (most recent call last):
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-09-15T02:29:30,152     call_subprocess(
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-09-15T02:29:30,152     raise error
2023-09-15T02:29:30,152 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-09-15T02:29:30,152 
2023-09-15T02:29:30,152 The above exception was the direct cause of the following exception:
2023-09-15T02:29:30,152 
2023-09-15T02:29:30,152 Traceback (most recent call last):
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-15T02:29:30,152     status = run_func(*args)
2023-09-15T02:29:30,152              ^^^^^^^^^^^^^^^
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-15T02:29:30,152     return func(self, options, args)
2023-09-15T02:29:30,152            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2023-09-15T02:29:30,152     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-09-15T02:29:30,152                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-09-15T02:29:30,152     result = self._result = resolver.resolve(
2023-09-15T02:29:30,152                             ^^^^^^^^^^^^^^^^^
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2023-09-15T02:29:30,152     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-09-15T02:29:30,152             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2023-09-15T02:29:30,152     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2023-09-15T02:29:30,152     if not criterion.candidates:
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2023-09-15T02:29:30,152     return bool(self._sequence)
2023-09-15T02:29:30,152            ^^^^^^^^^^^^^^^^^^^^
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-09-15T02:29:30,152     return any(self)
2023-09-15T02:29:30,152            ^^^^^^^^^
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-09-15T02:29:30,152     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-09-15T02:29:30,152            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-09-15T02:29:30,152     candidate = func()
2023-09-15T02:29:30,152                 ^^^^^^
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-09-15T02:29:30,152     self._link_candidate_cache[link] = LinkCandidate(
2023-09-15T02:29:30,152                                        ^^^^^^^^^^^^^^
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
2023-09-15T02:29:30,152     super().__init__(
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
2023-09-15T02:29:30,152     self.dist = self._prepare()
2023-09-15T02:29:30,152                 ^^^^^^^^^^^^^^^
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
2023-09-15T02:29:30,152     dist = self._prepare_distribution()
2023-09-15T02:29:30,152            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
2023-09-15T02:29:30,152     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-09-15T02:29:30,152            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement
2023-09-15T02:29:30,152     return self._prepare_linked_requirement(req, parallel_builds)
2023-09-15T02:29:30,152            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement
2023-09-15T02:29:30,152     dist = _get_prepared_distribution(
2023-09-15T02:29:30,152            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-09-15T02:29:30,152     abstract_dist.prepare_distribution_metadata(
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-09-15T02:29:30,152     self.req.prepare_metadata()
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata
2023-09-15T02:29:30,152     self.metadata_directory = generate_metadata_legacy(
2023-09-15T02:29:30,152                               ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-15T02:29:30,152   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-09-15T02:29:30,152     raise MetadataGenerationFailed(package_details=details) from error
2023-09-15T02:29:30,152 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-09-15T02:29:30,165 Removed unifrac==0.20.3 from https://files.pythonhosted.org/packages/ef/40/fcc8a73f40b27682661cad19dac3fbc0ed4f5cd3593d86939b2eb7309956/unifrac-0.20.3.tar.gz from build tracker '/tmp/pip-build-tracker-u9zem29k'
2023-09-15T02:29:30,165 Removed build tracker: '/tmp/pip-build-tracker-u9zem29k'