2023-09-15T11:07:06,776 Created temporary directory: /tmp/pip-build-tracker-khv0t7uh
2023-09-15T11:07:06,777 Initialized build tracking at /tmp/pip-build-tracker-khv0t7uh
2023-09-15T11:07:06,778 Created build tracker: /tmp/pip-build-tracker-khv0t7uh
2023-09-15T11:07:06,778 Entered build tracker: /tmp/pip-build-tracker-khv0t7uh
2023-09-15T11:07:06,779 Created temporary directory: /tmp/pip-wheel-k8j04l5v
2023-09-15T11:07:06,782 Created temporary directory: /tmp/pip-ephem-wheel-cache-b2uqcjfd
2023-09-15T11:07:06,803 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-15T11:07:06,807 2 location(s) to search for versions of linearfold:
2023-09-15T11:07:06,807 * https://pypi.org/simple/linearfold/
2023-09-15T11:07:06,807 * https://www.piwheels.org/simple/linearfold/
2023-09-15T11:07:06,808 Fetching project page and analyzing links: https://pypi.org/simple/linearfold/
2023-09-15T11:07:06,809 Getting page https://pypi.org/simple/linearfold/
2023-09-15T11:07:06,810 Found index url https://pypi.org/simple/
2023-09-15T11:07:07,030 Fetched page https://pypi.org/simple/linearfold/ as application/vnd.pypi.simple.v1+json
2023-09-15T11:07:07,032   Skipping link: No binaries permitted for linearfold: https://files.pythonhosted.org/packages/f0/a0/48e3487b631621f1c8dc77248420a53260cd38d1749312d52bf03c63f62a/LinearFold-1.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/linearfold/) (requires-python:>3.5.2)
2023-09-15T11:07:07,033   Found link https://files.pythonhosted.org/packages/57/1c/f5fc1b7ab5695d31128955a3e55f7974c3b14fdeb71dc4ec0320274e370e/LinearFold-1.0.tar.gz (from https://pypi.org/simple/linearfold/) (requires-python:>3.5.2), version: 1.0
2023-09-15T11:07:07,034   Skipping link: No binaries permitted for linearfold: https://files.pythonhosted.org/packages/07/90/01f88547ba2851e4a1b9c921e06ba42455b6707c70e0b6fcbef57970b02b/LinearFold-1.1-cp39-cp39-macosx_10_9_universal2.whl (from https://pypi.org/simple/linearfold/) (requires-python:>3.5.2)
2023-09-15T11:07:07,035   Found link https://files.pythonhosted.org/packages/60/c1/ddd3b6d86f5253f49cfc34af1afdf1c818b166b6d7895c9d54cb023771be/LinearFold-1.1.tar.gz (from https://pypi.org/simple/linearfold/) (requires-python:>3.5.2), version: 1.1
2023-09-15T11:07:07,035 Fetching project page and analyzing links: https://www.piwheels.org/simple/linearfold/
2023-09-15T11:07:07,036 Getting page https://www.piwheels.org/simple/linearfold/
2023-09-15T11:07:07,037 Found index url https://www.piwheels.org/simple/
2023-09-15T11:07:07,285 Fetched page https://www.piwheels.org/simple/linearfold/ as text/html
2023-09-15T11:07:07,288   Skipping link: No binaries permitted for linearfold: https://www.piwheels.org/simple/linearfold/LinearFold-1.1-cp39-cp39-linux_armv7l.whl#sha256=d6d85fbdf07d7aa7744a334136ea352609ca3fe2a951d9e09adce408a62de598 (from https://www.piwheels.org/simple/linearfold/) (requires-python:>3.5.2)
2023-09-15T11:07:07,289   Skipping link: No binaries permitted for linearfold: https://www.piwheels.org/simple/linearfold/LinearFold-1.1-cp39-cp39-linux_armv6l.whl#sha256=d6d85fbdf07d7aa7744a334136ea352609ca3fe2a951d9e09adce408a62de598 (from https://www.piwheels.org/simple/linearfold/) (requires-python:>3.5.2)
2023-09-15T11:07:07,290   Skipping link: No binaries permitted for linearfold: https://www.piwheels.org/simple/linearfold/LinearFold-1.1-cp37-cp37m-linux_armv7l.whl#sha256=828bf600b4c4f40907b7ad01952d4c6a0c46eee1cd95c9eb4f0e1f0eaead9805 (from https://www.piwheels.org/simple/linearfold/) (requires-python:>3.5.2)
2023-09-15T11:07:07,290   Skipping link: No binaries permitted for linearfold: https://www.piwheels.org/simple/linearfold/LinearFold-1.1-cp37-cp37m-linux_armv6l.whl#sha256=828bf600b4c4f40907b7ad01952d4c6a0c46eee1cd95c9eb4f0e1f0eaead9805 (from https://www.piwheels.org/simple/linearfold/) (requires-python:>3.5.2)
2023-09-15T11:07:07,291   Skipping link: No binaries permitted for linearfold: https://www.piwheels.org/simple/linearfold/LinearFold-1.0-cp39-cp39-linux_armv7l.whl#sha256=8250685a0fd51ebae8f8caec4143af60deed33a543ebcaa9f44fb01c2c0838a2 (from https://www.piwheels.org/simple/linearfold/) (requires-python:>3.5.2)
2023-09-15T11:07:07,292   Skipping link: No binaries permitted for linearfold: https://www.piwheels.org/simple/linearfold/LinearFold-1.0-cp39-cp39-linux_armv6l.whl#sha256=8250685a0fd51ebae8f8caec4143af60deed33a543ebcaa9f44fb01c2c0838a2 (from https://www.piwheels.org/simple/linearfold/) (requires-python:>3.5.2)
2023-09-15T11:07:07,292   Skipping link: No binaries permitted for linearfold: https://www.piwheels.org/simple/linearfold/LinearFold-1.0-cp37-cp37m-linux_armv7l.whl#sha256=ecd6daf4fde8e567337d12acf41d096b8b99af5ef01a80bded062797e4a4f495 (from https://www.piwheels.org/simple/linearfold/) (requires-python:>3.5.2)
2023-09-15T11:07:07,293   Skipping link: No binaries permitted for linearfold: https://www.piwheels.org/simple/linearfold/LinearFold-1.0-cp37-cp37m-linux_armv6l.whl#sha256=ecd6daf4fde8e567337d12acf41d096b8b99af5ef01a80bded062797e4a4f495 (from https://www.piwheels.org/simple/linearfold/) (requires-python:>3.5.2)
2023-09-15T11:07:07,293 Skipping link: not a file: https://www.piwheels.org/simple/linearfold/
2023-09-15T11:07:07,294 Skipping link: not a file: https://pypi.org/simple/linearfold/
2023-09-15T11:07:07,312 Given no hashes to check 1 links for project 'linearfold': discarding no candidates
2023-09-15T11:07:07,331 Collecting linearfold==1.0
2023-09-15T11:07:07,333   Created temporary directory: /tmp/pip-unpack-554ru3en
2023-09-15T11:07:07,548   Downloading LinearFold-1.0.tar.gz (56 kB)
2023-09-15T11:07:07,662   Added linearfold==1.0 from https://files.pythonhosted.org/packages/57/1c/f5fc1b7ab5695d31128955a3e55f7974c3b14fdeb71dc4ec0320274e370e/LinearFold-1.0.tar.gz to build tracker '/tmp/pip-build-tracker-khv0t7uh'
2023-09-15T11:07:07,664   Running setup.py (path:/tmp/pip-wheel-k8j04l5v/linearfold_141a87f12d334016b8634b5724f5878c/setup.py) egg_info for package linearfold
2023-09-15T11:07:07,665   Created temporary directory: /tmp/pip-pip-egg-info-icp8um_w
2023-09-15T11:07:07,666   Preparing metadata (setup.py): started
2023-09-15T11:07:07,668   Running command python setup.py egg_info
2023-09-15T11:07:08,687   running egg_info
2023-09-15T11:07:08,688   creating /tmp/pip-pip-egg-info-icp8um_w/LinearFold.egg-info
2023-09-15T11:07:08,712   writing /tmp/pip-pip-egg-info-icp8um_w/LinearFold.egg-info/PKG-INFO
2023-09-15T11:07:08,716   writing dependency_links to /tmp/pip-pip-egg-info-icp8um_w/LinearFold.egg-info/dependency_links.txt
2023-09-15T11:07:08,718   writing top-level names to /tmp/pip-pip-egg-info-icp8um_w/LinearFold.egg-info/top_level.txt
2023-09-15T11:07:08,720   writing manifest file '/tmp/pip-pip-egg-info-icp8um_w/LinearFold.egg-info/SOURCES.txt'
2023-09-15T11:07:08,792   reading manifest file '/tmp/pip-pip-egg-info-icp8um_w/LinearFold.egg-info/SOURCES.txt'
2023-09-15T11:07:08,794   reading manifest template 'MANIFEST.in'
2023-09-15T11:07:08,806   adding license file 'LICENSE'
2023-09-15T11:07:08,807   adding license file 'AUTHORS'
2023-09-15T11:07:08,808   writing manifest file '/tmp/pip-pip-egg-info-icp8um_w/LinearFold.egg-info/SOURCES.txt'
2023-09-15T11:07:08,914   Preparing metadata (setup.py): finished with status 'done'
2023-09-15T11:07:08,918   Source in /tmp/pip-wheel-k8j04l5v/linearfold_141a87f12d334016b8634b5724f5878c has version 1.0, which satisfies requirement linearfold==1.0 from https://files.pythonhosted.org/packages/57/1c/f5fc1b7ab5695d31128955a3e55f7974c3b14fdeb71dc4ec0320274e370e/LinearFold-1.0.tar.gz
2023-09-15T11:07:08,919   Removed linearfold==1.0 from https://files.pythonhosted.org/packages/57/1c/f5fc1b7ab5695d31128955a3e55f7974c3b14fdeb71dc4ec0320274e370e/LinearFold-1.0.tar.gz from build tracker '/tmp/pip-build-tracker-khv0t7uh'
2023-09-15T11:07:08,926 Created temporary directory: /tmp/pip-unpack-wx2bkhok
2023-09-15T11:07:08,927 Created temporary directory: /tmp/pip-unpack-7idsate2
2023-09-15T11:07:08,930 Building wheels for collected packages: linearfold
2023-09-15T11:07:08,934   Created temporary directory: /tmp/pip-wheel-cjh61zo1
2023-09-15T11:07:08,935   Building wheel for linearfold (setup.py): started
2023-09-15T11:07:08,936   Destination directory: /tmp/pip-wheel-cjh61zo1
2023-09-15T11:07:08,937   Running command python setup.py bdist_wheel
2023-09-15T11:07:09,931   running bdist_wheel
2023-09-15T11:07:10,027   running build
2023-09-15T11:07:10,028   running build_ext
2023-09-15T11:07:10,540   building 'LinearFold' extension
2023-09-15T11:07:10,541   creating build
2023-09-15T11:07:10,541   creating build/temp.linux-armv7l-cpython-311
2023-09-15T11:07:10,542   creating build/temp.linux-armv7l-cpython-311/src
2023-09-15T11:07:10,543   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I. -I... -I/tmp/pip-wheel-k8j04l5v/linearfold_141a87f12d334016b8634b5724f5878c/src -I/tmp/pip-wheel-k8j04l5v/linearfold_141a87f12d334016b8634b5724f5878c/src/Utils -I/usr/include/python3.11 -c src/python.cpp -o build/temp.linux-armv7l-cpython-311/src/python.o -w -Dlv -Dis_cube_pruning -Dis_candidate_list -std=c++11
2023-09-15T11:07:22,400   In file included from /usr/include/c++/12/vector:70,
2023-09-15T11:07:22,401                    from src/LinearFold.h:14,
2023-09-15T11:07:22,402                    from src/python.cpp:16:
2023-09-15T11:07:22,402   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-09-15T11:07:22,403   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-09-15T11:07:22,403     439 |       vector<_Tp, _Alloc>::
2023-09-15T11:07:22,404         |       ^~~~~~~~~~~~~~~~~~~
2023-09-15T11:07:32,970   In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2023-09-15T11:07:32,971       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2023-09-15T11:07:32,972       inlined from ‘BeamCKYParser::BeamCKYParser(int, bool, bool, bool, bool, float, std::string)’ at src/LinearFold.cpp:2222:37:
2023-09-15T11:07:32,973   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-09-15T11:07:32,973     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2023-09-15T11:07:32,974         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-15T11:07:32,975   In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2023-09-15T11:07:32,976       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2023-09-15T11:07:32,976       inlined from ‘BeamCKYParser::BeamCKYParser(int, bool, bool, bool, bool, float, std::string)’ at src/LinearFold.cpp:2226:37:
2023-09-15T11:07:32,977   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-09-15T11:07:32,978     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2023-09-15T11:07:32,978         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-15T11:07:42,000   creating build/lib.linux-armv7l-cpython-311
2023-09-15T11:07:42,001   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/python.o -L/tmp/pip-wheel-k8j04l5v/linearfold_141a87f12d334016b8634b5724f5878c -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/LinearFold.cpython-311-arm-linux-gnueabihf.so
2023-09-15T11:07:42,392   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-15T11:07:42,393   !!

2023-09-15T11:07:42,394           ********************************************************************************
2023-09-15T11:07:42,394           Please avoid running ``setup.py`` directly.
2023-09-15T11:07:42,395           Instead, use pypa/build, pypa/installer or other
2023-09-15T11:07:42,395           standards-based tools.

2023-09-15T11:07:42,396           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-15T11:07:42,397           ********************************************************************************

2023-09-15T11:07:42,398   !!
2023-09-15T11:07:42,398     self.initialize_options()
2023-09-15T11:07:42,420   installing to build/bdist.linux-armv7l/wheel
2023-09-15T11:07:42,421   running install
2023-09-15T11:07:42,445   running install_lib
2023-09-15T11:07:42,469   creating build/bdist.linux-armv7l
2023-09-15T11:07:42,469   creating build/bdist.linux-armv7l/wheel
2023-09-15T11:07:42,470   copying build/lib.linux-armv7l-cpython-311/LinearFold.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2023-09-15T11:07:42,514   running install_egg_info
2023-09-15T11:07:42,591   running egg_info
2023-09-15T11:07:42,624   writing LinearFold.egg-info/PKG-INFO
2023-09-15T11:07:42,628   writing dependency_links to LinearFold.egg-info/dependency_links.txt
2023-09-15T11:07:42,630   writing top-level names to LinearFold.egg-info/top_level.txt
2023-09-15T11:07:42,658   reading manifest file 'LinearFold.egg-info/SOURCES.txt'
2023-09-15T11:07:42,661   reading manifest template 'MANIFEST.in'
2023-09-15T11:07:42,672   adding license file 'LICENSE'
2023-09-15T11:07:42,672   adding license file 'AUTHORS'
2023-09-15T11:07:42,674   writing manifest file 'LinearFold.egg-info/SOURCES.txt'
2023-09-15T11:07:42,676   Copying LinearFold.egg-info to build/bdist.linux-armv7l/wheel/LinearFold-1.0-py3.11.egg-info
2023-09-15T11:07:42,684   running install_scripts
2023-09-15T11:07:42,736   creating build/bdist.linux-armv7l/wheel/LinearFold-1.0.dist-info/WHEEL
2023-09-15T11:07:42,739   creating '/tmp/pip-wheel-cjh61zo1/LinearFold-1.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-15T11:07:43,203   adding 'LinearFold.cpython-311-arm-linux-gnueabihf.so'
2023-09-15T11:07:43,227   adding 'LinearFold-1.0.dist-info/AUTHORS'
2023-09-15T11:07:43,228   adding 'LinearFold-1.0.dist-info/LICENSE'
2023-09-15T11:07:43,230   adding 'LinearFold-1.0.dist-info/METADATA'
2023-09-15T11:07:43,231   adding 'LinearFold-1.0.dist-info/WHEEL'
2023-09-15T11:07:43,232   adding 'LinearFold-1.0.dist-info/top_level.txt'
2023-09-15T11:07:43,233   adding 'LinearFold-1.0.dist-info/RECORD'
2023-09-15T11:07:43,244   removing build/bdist.linux-armv7l/wheel
2023-09-15T11:07:43,391   Building wheel for linearfold (setup.py): finished with status 'done'
2023-09-15T11:07:43,404   Created wheel for linearfold: filename=LinearFold-1.0-cp311-cp311-linux_armv7l.whl size=909337 sha256=0c5715e8c3326a1801eca143964d1a67e02131f92697e239742aa1c1e43e9c4c
2023-09-15T11:07:43,406   Stored in directory: /tmp/pip-ephem-wheel-cache-b2uqcjfd/wheels/12/ba/3c/6c11e9a30df9d04db1ea8603fd4dabe231cc76636d83f0b761
2023-09-15T11:07:43,417 Successfully built linearfold
2023-09-15T11:07:43,448 Removed build tracker: '/tmp/pip-build-tracker-khv0t7uh'