2023-09-15T16:35:02,158 Created temporary directory: /tmp/pip-build-tracker-nrxh519i 2023-09-15T16:35:02,159 Initialized build tracking at /tmp/pip-build-tracker-nrxh519i 2023-09-15T16:35:02,160 Created build tracker: /tmp/pip-build-tracker-nrxh519i 2023-09-15T16:35:02,160 Entered build tracker: /tmp/pip-build-tracker-nrxh519i 2023-09-15T16:35:02,161 Created temporary directory: /tmp/pip-wheel-wcytfi7k 2023-09-15T16:35:02,164 Created temporary directory: /tmp/pip-ephem-wheel-cache-xt189xqb 2023-09-15T16:35:02,185 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-15T16:35:02,189 2 location(s) to search for versions of lhc-python: 2023-09-15T16:35:02,189 * https://pypi.org/simple/lhc-python/ 2023-09-15T16:35:02,189 * https://www.piwheels.org/simple/lhc-python/ 2023-09-15T16:35:02,190 Fetching project page and analyzing links: https://pypi.org/simple/lhc-python/ 2023-09-15T16:35:02,191 Getting page https://pypi.org/simple/lhc-python/ 2023-09-15T16:35:02,192 Found index url https://pypi.org/simple/ 2023-09-15T16:35:02,429 Fetched page https://pypi.org/simple/lhc-python/ as application/vnd.pypi.simple.v1+json 2023-09-15T16:35:02,438 Found link https://files.pythonhosted.org/packages/20/4d/bcfad057cf7e5ed81328ef0610bc25252402409ca94ba348d5b5752eb976/lhc-python-1.1.1.zip (from https://pypi.org/simple/lhc-python/), version: 1.1.1 2023-09-15T16:35:02,438 Found link https://files.pythonhosted.org/packages/e7/a6/76eb4a8bab55d03b619571bc2116566506cc2e7ce7460f157143b2567850/lhc-python-1.1.2.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.1.2 2023-09-15T16:35:02,439 Found link https://files.pythonhosted.org/packages/03/2c/263a9b1a6156f88c8646c14b4c76dfe68db2acd3969f415360425a4a4c8b/lhc-python-1.1.4.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.1.4 2023-09-15T16:35:02,440 Found link https://files.pythonhosted.org/packages/77/15/0f7890596b67965f3756409e62171d917a41dff58add86e8bc8f0288d795/lhc-python-1.1.5.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.1.5 2023-09-15T16:35:02,440 Found link https://files.pythonhosted.org/packages/c9/54/dba9993c22f589d368dc6ceac40e97950a8c9d17752d56bdfcf4258b7ff3/lhc-python-1.1.6.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.1.6 2023-09-15T16:35:02,441 Found link https://files.pythonhosted.org/packages/3e/3e/3c07514aaed13cb82e26335ce97c335e9fd03c2722da0411a94c199aea2c/lhc-python-1.2.1.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.2.1 2023-09-15T16:35:02,442 Found link https://files.pythonhosted.org/packages/d8/5d/9c598e5688faddf029d1a3b937f6ef06a8f4dfaa658f2a02461a8f9bfefb/lhc-python-1.2.2.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.2.2 2023-09-15T16:35:02,442 Found link 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https://files.pythonhosted.org/packages/b2/43/4d3d6f66c39eb2ce7988d5093f266a5b7f48f5807a627144778697f18c3d/lhc_python-2.0.2-py3.6.egg (from https://pypi.org/simple/lhc-python/) 2023-09-15T16:35:02,458 Found link https://files.pythonhosted.org/packages/ce/b5/081d3442e7eb776a3d7f633a3b6155279368791b30ff36b2646f541cdf6a/lhc-python-2.0.3.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.0.3 2023-09-15T16:35:02,458 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/0d/0b/dfcbd35dcc42a69971de088078c258f0be3c74518dc899a8291ebf434059/lhc_python-2.0.3-py3.6.egg (from https://pypi.org/simple/lhc-python/) 2023-09-15T16:35:02,459 Found link https://files.pythonhosted.org/packages/22/5c/c503283c44974ebb16c4dd828d20d22a5ca2590c2aaf394c7e19a8fb3ec3/lhc-python-2.1.2.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.2 2023-09-15T16:35:02,459 Found link https://files.pythonhosted.org/packages/84/46/1e7d026008a62d75f4d1f2472238aaff1f0640b56847cabff90fbeb5be52/lhc-python-2.1.3.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.3 2023-09-15T16:35:02,460 Found link https://files.pythonhosted.org/packages/22/1b/2b6c832c9daa4415fac59998f62d8550b5b27c7d58eaad7831d892c868c0/lhc-python-2.1.4.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.4 2023-09-15T16:35:02,460 Found link https://files.pythonhosted.org/packages/fb/37/c48870f38b0f8ef9e7176578ac19b147d029b4c803a215abba653200bc81/lhc-python-2.1.5.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.5 2023-09-15T16:35:02,461 Found link https://files.pythonhosted.org/packages/eb/d8/3643ac239d95d3aa912de2fa42ca9d19ace2c808fd6e3544c59fc3d42f5d/lhc-python-2.1.6.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.6 2023-09-15T16:35:02,461 Found link https://files.pythonhosted.org/packages/52/78/2f403e2cd2bb73bf29b6f5f18d22a3e50bb051c9364c47f4462b5efd5998/lhc-python-2.1.7.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.7 2023-09-15T16:35:02,462 Found link https://files.pythonhosted.org/packages/92/55/ea8060918c8217e3b94a5d060c8e520afbc2f0a5a0cc521e9353a63ba430/lhc-python-2.1.8.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.8 2023-09-15T16:35:02,463 Found link https://files.pythonhosted.org/packages/89/80/5c410402cd1616f21426cf8a67d4263bfe7c03328b36934e80578ebdeca0/lhc-python-2.2.0.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.2.0 2023-09-15T16:35:02,464 Found link https://files.pythonhosted.org/packages/2a/8b/c3ebd46c60800a5a6ff42dda3ea397b4ad67aae35d7c70478129c22d2595/lhc-python-2.3.0.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.3.0 2023-09-15T16:35:02,464 Found link https://files.pythonhosted.org/packages/35/65/0c81d0a68bce1ad009b36e2dcea7376b9b075cc3e0078d0c90a3e5b835aa/lhc-python-2.3.1.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.3.1 2023-09-15T16:35:02,465 Found link https://files.pythonhosted.org/packages/4b/24/689dfb21592cdbb2be8bf2875ff9bd6e1415977c72c59ba9aa31a2361b1a/lhc-python-2.5.0.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.5.0 2023-09-15T16:35:02,466 Fetching project page and analyzing links: https://www.piwheels.org/simple/lhc-python/ 2023-09-15T16:35:02,467 Getting page https://www.piwheels.org/simple/lhc-python/ 2023-09-15T16:35:02,468 Found index url https://www.piwheels.org/simple/ 2023-09-15T16:35:02,787 Fetched page https://www.piwheels.org/simple/lhc-python/ as text/html 2023-09-15T16:35:02,794 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.1.4-py3-none-any.whl#sha256=d32211a85640f4a17ff83662d611e5f83b67c896923f1375f71b638fa4d3b6d7 (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,795 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.1.5-py3-none-any.whl#sha256=edfeded10bbaebc6d2ae8d7f2a884c6d3f5e6f5fecf24464876f924a3d1345f5 (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,796 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.1.6-py3-none-any.whl#sha256=186631a6f058bcea60cab0617672fbdf0622ca248f93fe4ba0fcd5b99e81e155 (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,797 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.2.1-py3-none-any.whl#sha256=cce46dbf75b349c6d1a1e07137fcb53d43db81db44cca36018feb51402d1ee63 (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,797 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.2.2-py3-none-any.whl#sha256=dcb66868d70a0f2278bc5581da822e48001a6ce2e942597e910a444401169977 (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,798 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.2.3-py3-none-any.whl#sha256=95fd10f8114946d0853912946df0e975e89f7941f05fe76a536486df5d2eb2df (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,798 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.2.4-py3-none-any.whl#sha256=a27467fd63e9d8aa1b8bbafa2afdbeec1fa9ad4de10c42232f39dfdf58140fc1 (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,799 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.2.5-py3-none-any.whl#sha256=c2a95400b7accd32f33010761938fb7faa2d56c68a184b45905077eac5539acc (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,799 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.2.6-py3-none-any.whl#sha256=d298acc485624c198c5bbc63fde139cb0d68d3a0485689978db8389643b2234f (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,800 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.0-py3-none-any.whl#sha256=5f8d7359e1266989d96923f003d01754bdf0ec69ca33c1090f90a02738891e2e (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,800 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.1-py3-none-any.whl#sha256=81d19c382e5b599d59572d40e693021169e5e1ac75d2a2fc01d121f4730cd0a1 (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,801 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.2-py3-none-any.whl#sha256=35e2ae84128c5e5468e11b45074afffd45cc2cbcf67c85390e7da88c2e7d45fd (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,802 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.3-py3-none-any.whl#sha256=f48dd77f42e9a1bce9b146c899672e708f821dd99a9387bc003ddb7bae7f85f5 (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,802 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.4-py3-none-any.whl#sha256=4d6654477c0c4b950069859178d13e0cda55d662710788d85785127f835b56dd (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,803 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.5-py3-none-any.whl#sha256=a7d94751ffac710ba149d64225d9baabe5483de0f2962e7d8e69693747c4d02f (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,803 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.6-py3-none-any.whl#sha256=c9c7368cf2cf8c6bc41386185f20ee192bda870b2a8435396edebd0137a93deb (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,804 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.7-py3-none-any.whl#sha256=2e265c9621fce0bbf8256fd10eedc5702068b49cdad1c35ecf5472f636d71b6a (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,805 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.8-py3-none-any.whl#sha256=f9723dff85a195da072299de362ce59c8d78ad8e6f6ce3c50f0ad86f76dc1191 (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,805 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-py3-none-any.whl#sha256=4e6ea2cdd256aff52b5c9f8be9561e908881fc9bd1410aeba0a6de7314943875 (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,806 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-python-py3-none-any.whl#sha256=deb5c0ee519268ff09ca32fc2b3290795790aadd6a94266e3e4740405ca3860a (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,806 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp34-cp34m-linux_armv6l.whl#sha256=f71bbe1c1b28e0dfdb25d560edf25b694166ca13f7aa4042275f358a57021bbc (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,807 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp34-cp34m-linux_armv7l.whl#sha256=f71bbe1c1b28e0dfdb25d560edf25b694166ca13f7aa4042275f358a57021bbc (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,807 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp35-cp35m-linux_armv6l.whl#sha256=b955e9687b1382d9e684fdb6d679bb6ae85d30d3937f37af4ff886151427db1c (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,808 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp35-cp35m-linux_armv7l.whl#sha256=b955e9687b1382d9e684fdb6d679bb6ae85d30d3937f37af4ff886151427db1c (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,809 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp37-cp37m-linux_armv6l.whl#sha256=5f4be52dacdba47e8e187aa794ebf6c409a898befcbd9a4a1e1bc1b2e2d2b3b3 (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,809 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp37-cp37m-linux_armv7l.whl#sha256=5f4be52dacdba47e8e187aa794ebf6c409a898befcbd9a4a1e1bc1b2e2d2b3b3 (from https://www.piwheels.org/simple/lhc-python/) 2023-09-15T16:35:02,810 Skipping link: not a file: https://www.piwheels.org/simple/lhc-python/ 2023-09-15T16:35:02,810 Skipping link: not a file: https://pypi.org/simple/lhc-python/ 2023-09-15T16:35:02,833 Given no hashes to check 1 links for project 'lhc-python': discarding no candidates 2023-09-15T16:35:02,851 Collecting lhc-python==2.5.0 2023-09-15T16:35:02,854 Created temporary directory: /tmp/pip-unpack-yemoja5f 2023-09-15T16:35:03,075 Downloading lhc-python-2.5.0.tar.gz (95 kB) 2023-09-15T16:35:03,490 Added lhc-python==2.5.0 from https://files.pythonhosted.org/packages/4b/24/689dfb21592cdbb2be8bf2875ff9bd6e1415977c72c59ba9aa31a2361b1a/lhc-python-2.5.0.tar.gz to build tracker '/tmp/pip-build-tracker-nrxh519i' 2023-09-15T16:35:03,491 Running setup.py (path:/tmp/pip-wheel-wcytfi7k/lhc-python_5c5f71c51a4a4477807c2e4d0f949601/setup.py) egg_info for package lhc-python 2023-09-15T16:35:03,492 Created temporary directory: /tmp/pip-pip-egg-info-sccswb_3 2023-09-15T16:35:03,493 Preparing metadata (setup.py): started 2023-09-15T16:35:03,494 Running command python setup.py egg_info 2023-09-15T16:35:04,559 running egg_info 2023-09-15T16:35:04,560 creating /tmp/pip-pip-egg-info-sccswb_3/lhc_python.egg-info 2023-09-15T16:35:04,586 writing /tmp/pip-pip-egg-info-sccswb_3/lhc_python.egg-info/PKG-INFO 2023-09-15T16:35:04,589 writing dependency_links to /tmp/pip-pip-egg-info-sccswb_3/lhc_python.egg-info/dependency_links.txt 2023-09-15T16:35:04,591 writing requirements to /tmp/pip-pip-egg-info-sccswb_3/lhc_python.egg-info/requires.txt 2023-09-15T16:35:04,592 writing top-level names to /tmp/pip-pip-egg-info-sccswb_3/lhc_python.egg-info/top_level.txt 2023-09-15T16:35:04,593 writing manifest file '/tmp/pip-pip-egg-info-sccswb_3/lhc_python.egg-info/SOURCES.txt' 2023-09-15T16:35:04,728 reading manifest file '/tmp/pip-pip-egg-info-sccswb_3/lhc_python.egg-info/SOURCES.txt' 2023-09-15T16:35:04,730 reading manifest template 'MANIFEST.in' 2023-09-15T16:35:04,731 warning: no files found matching '*.txt' under directory 'docs' 2023-09-15T16:35:04,732 adding license file 'LICENSE.txt' 2023-09-15T16:35:04,739 writing manifest file '/tmp/pip-pip-egg-info-sccswb_3/lhc_python.egg-info/SOURCES.txt' 2023-09-15T16:35:04,847 Preparing metadata (setup.py): finished with status 'done' 2023-09-15T16:35:04,851 Source in /tmp/pip-wheel-wcytfi7k/lhc-python_5c5f71c51a4a4477807c2e4d0f949601 has version 2.5.0, which satisfies requirement lhc-python==2.5.0 from https://files.pythonhosted.org/packages/4b/24/689dfb21592cdbb2be8bf2875ff9bd6e1415977c72c59ba9aa31a2361b1a/lhc-python-2.5.0.tar.gz 2023-09-15T16:35:04,852 Removed lhc-python==2.5.0 from https://files.pythonhosted.org/packages/4b/24/689dfb21592cdbb2be8bf2875ff9bd6e1415977c72c59ba9aa31a2361b1a/lhc-python-2.5.0.tar.gz from build tracker '/tmp/pip-build-tracker-nrxh519i' 2023-09-15T16:35:04,856 Created temporary directory: /tmp/pip-unpack-fupnz4cj 2023-09-15T16:35:04,857 Created temporary directory: /tmp/pip-unpack-vy76s182 2023-09-15T16:35:04,864 Building wheels for collected packages: lhc-python 2023-09-15T16:35:04,868 Created temporary directory: /tmp/pip-wheel-sn2oqiy3 2023-09-15T16:35:04,868 Building wheel for lhc-python (setup.py): started 2023-09-15T16:35:04,870 Destination directory: /tmp/pip-wheel-sn2oqiy3 2023-09-15T16:35:04,870 Running command python setup.py bdist_wheel 2023-09-15T16:35:05,886 running bdist_wheel 2023-09-15T16:35:05,977 running build 2023-09-15T16:35:05,978 running build_py 2023-09-15T16:35:06,005 creating build 2023-09-15T16:35:06,006 creating build/lib.linux-armv7l-cpython-311 2023-09-15T16:35:06,007 creating build/lib.linux-armv7l-cpython-311/lhc 2023-09-15T16:35:06,009 copying lhc/order.py -> build/lib.linux-armv7l-cpython-311/lhc 2023-09-15T16:35:06,011 copying lhc/math.py -> build/lib.linux-armv7l-cpython-311/lhc 2023-09-15T16:35:06,013 copying lhc/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc 2023-09-15T16:35:06,015 creating build/lib.linux-armv7l-cpython-311/lhc/intervaltools 2023-09-15T16:35:06,016 copying lhc/intervaltools/set.py -> build/lib.linux-armv7l-cpython-311/lhc/intervaltools 2023-09-15T16:35:06,018 copying lhc/intervaltools/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/intervaltools 2023-09-15T16:35:06,021 creating build/lib.linux-armv7l-cpython-311/lhc/binf 2023-09-15T16:35:06,022 copying lhc/binf/iupac.py -> build/lib.linux-armv7l-cpython-311/lhc/binf 2023-09-15T16:35:06,024 copying lhc/binf/kmer.py -> build/lib.linux-armv7l-cpython-311/lhc/binf 2023-09-15T16:35:06,027 copying lhc/binf/genetic_code.py -> build/lib.linux-armv7l-cpython-311/lhc/binf 2023-09-15T16:35:06,029 copying lhc/binf/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf 2023-09-15T16:35:06,031 copying lhc/binf/identifier.py -> build/lib.linux-armv7l-cpython-311/lhc/binf 2023-09-15T16:35:06,033 copying lhc/binf/skew.py -> build/lib.linux-armv7l-cpython-311/lhc/binf 2023-09-15T16:35:06,035 creating build/lib.linux-armv7l-cpython-311/lhc/misc 2023-09-15T16:35:06,037 copying lhc/misc/string.py -> build/lib.linux-armv7l-cpython-311/lhc/misc 2023-09-15T16:35:06,039 copying lhc/misc/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/misc 2023-09-15T16:35:06,040 copying lhc/misc/tools.py -> build/lib.linux-armv7l-cpython-311/lhc/misc 2023-09-15T16:35:06,043 copying lhc/misc/performance_measures.py -> build/lib.linux-armv7l-cpython-311/lhc/misc 2023-09-15T16:35:06,046 creating build/lib.linux-armv7l-cpython-311/lhc/interval 2023-09-15T16:35:06,047 copying lhc/interval/binner.py -> build/lib.linux-armv7l-cpython-311/lhc/interval 2023-09-15T16:35:06,049 copying lhc/interval/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/interval 2023-09-15T16:35:06,051 copying lhc/interval/interval.py -> build/lib.linux-armv7l-cpython-311/lhc/interval 2023-09-15T16:35:06,053 creating build/lib.linux-armv7l-cpython-311/lhc/filetools 2023-09-15T16:35:06,054 copying lhc/filetools/shared_filepool.py -> build/lib.linux-armv7l-cpython-311/lhc/filetools 2023-09-15T16:35:06,057 copying lhc/filetools/shared_file.py -> build/lib.linux-armv7l-cpython-311/lhc/filetools 2023-09-15T16:35:06,059 copying lhc/filetools/shared_connection.py -> build/lib.linux-armv7l-cpython-311/lhc/filetools 2023-09-15T16:35:06,061 copying lhc/filetools/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/filetools 2023-09-15T16:35:06,063 copying lhc/filetools/filepool.py -> build/lib.linux-armv7l-cpython-311/lhc/filetools 2023-09-15T16:35:06,065 creating build/lib.linux-armv7l-cpython-311/lhc/indices 2023-09-15T16:35:06,066 copying lhc/indices/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/indices 2023-09-15T16:35:06,067 copying lhc/indices/tracked_index.py -> build/lib.linux-armv7l-cpython-311/lhc/indices 2023-09-15T16:35:06,069 copying lhc/indices/tbi.py -> build/lib.linux-armv7l-cpython-311/lhc/indices 2023-09-15T16:35:06,071 creating build/lib.linux-armv7l-cpython-311/lhc/collections 2023-09-15T16:35:06,072 copying lhc/collections/interval_map.py -> build/lib.linux-armv7l-cpython-311/lhc/collections 2023-09-15T16:35:06,074 copying lhc/collections/multi_dimension_map.py -> build/lib.linux-armv7l-cpython-311/lhc/collections 2023-09-15T16:35:06,076 copying lhc/collections/inorder_access_set.py -> build/lib.linux-armv7l-cpython-311/lhc/collections 2023-09-15T16:35:06,077 copying lhc/collections/interval_set.py -> build/lib.linux-armv7l-cpython-311/lhc/collections 2023-09-15T16:35:06,079 copying lhc/collections/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/collections 2023-09-15T16:35:06,081 copying lhc/collections/tracked_set.py -> build/lib.linux-armv7l-cpython-311/lhc/collections 2023-09-15T16:35:06,082 copying lhc/collections/inorder_access_interval_set.py -> build/lib.linux-armv7l-cpython-311/lhc/collections 2023-09-15T16:35:06,084 copying lhc/collections/tracked_map.py -> build/lib.linux-armv7l-cpython-311/lhc/collections 2023-09-15T16:35:06,086 creating build/lib.linux-armv7l-cpython-311/lhc/io 2023-09-15T16:35:06,087 copying lhc/io/cut.py -> build/lib.linux-armv7l-cpython-311/lhc/io 2023-09-15T16:35:06,089 copying lhc/io/file.py -> build/lib.linux-armv7l-cpython-311/lhc/io 2023-09-15T16:35:06,090 copying lhc/io/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io 2023-09-15T16:35:06,093 creating build/lib.linux-armv7l-cpython-311/lhc/itertools 2023-09-15T16:35:06,094 copying lhc/itertools/sorted_iterator_merger.py -> build/lib.linux-armv7l-cpython-311/lhc/itertools 2023-09-15T16:35:06,095 copying lhc/itertools/merge_sorted.py -> build/lib.linux-armv7l-cpython-311/lhc/itertools 2023-09-15T16:35:06,097 copying lhc/itertools/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/itertools 2023-09-15T16:35:06,099 copying lhc/itertools/chunked_iterator.py -> build/lib.linux-armv7l-cpython-311/lhc/itertools 2023-09-15T16:35:06,101 creating build/lib.linux-armv7l-cpython-311/lhc/graph 2023-09-15T16:35:06,102 copying lhc/graph/n_partite_graph.py -> build/lib.linux-armv7l-cpython-311/lhc/graph 2023-09-15T16:35:06,104 copying lhc/graph/graph.py -> build/lib.linux-armv7l-cpython-311/lhc/graph 2023-09-15T16:35:06,106 copying lhc/graph/hyper_graph.py -> build/lib.linux-armv7l-cpython-311/lhc/graph 2023-09-15T16:35:06,107 copying lhc/graph/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/graph 2023-09-15T16:35:06,110 creating build/lib.linux-armv7l-cpython-311/lhc/tools 2023-09-15T16:35:06,111 copying lhc/tools/sorter.py -> build/lib.linux-armv7l-cpython-311/lhc/tools 2023-09-15T16:35:06,112 copying lhc/tools/tokeniser.py -> build/lib.linux-armv7l-cpython-311/lhc/tools 2023-09-15T16:35:06,114 copying lhc/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/tools 2023-09-15T16:35:06,116 creating build/lib.linux-armv7l-cpython-311/lhc/random 2023-09-15T16:35:06,117 copying lhc/random/reservoir.py -> build/lib.linux-armv7l-cpython-311/lhc/random 2023-09-15T16:35:06,118 copying lhc/random/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/random 2023-09-15T16:35:06,132 creating build/lib.linux-armv7l-cpython-311/lhc/binf/alignment 2023-09-15T16:35:06,133 copying lhc/binf/alignment/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/alignment 2023-09-15T16:35:06,134 copying lhc/binf/alignment/__main__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/alignment 2023-09-15T16:35:06,136 creating build/lib.linux-armv7l-cpython-311/lhc/binf/loci 2023-09-15T16:35:06,137 copying lhc/binf/loci/make_loci.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/loci 2023-09-15T16:35:06,139 copying lhc/binf/loci/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/loci 2023-09-15T16:35:06,140 copying lhc/binf/loci/__main__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/loci 2023-09-15T16:35:06,142 creating build/lib.linux-armv7l-cpython-311/lhc/binf/misc 2023-09-15T16:35:06,143 copying lhc/binf/misc/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/misc 2023-09-15T16:35:06,145 copying lhc/binf/misc/__main__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/misc 2023-09-15T16:35:06,147 creating build/lib.linux-armv7l-cpython-311/lhc/binf/genomic_coordinate 2023-09-15T16:35:06,148 copying lhc/binf/genomic_coordinate/genomic_interval.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/genomic_coordinate 2023-09-15T16:35:06,150 copying lhc/binf/genomic_coordinate/nested_genomic_interval.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/genomic_coordinate 2023-09-15T16:35:06,152 copying lhc/binf/genomic_coordinate/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/genomic_coordinate 2023-09-15T16:35:06,153 copying lhc/binf/genomic_coordinate/genomic_position.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/genomic_coordinate 2023-09-15T16:35:06,155 creating build/lib.linux-armv7l-cpython-311/lhc/binf/variant 2023-09-15T16:35:06,156 copying lhc/binf/variant/codon_variant.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/variant 2023-09-15T16:35:06,158 copying lhc/binf/variant/amino_acid_variant.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/variant 2023-09-15T16:35:06,160 copying lhc/binf/variant/coding_variant.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/variant 2023-09-15T16:35:06,162 copying lhc/binf/variant/variant.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/variant 2023-09-15T16:35:06,163 copying lhc/binf/variant/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/variant 2023-09-15T16:35:06,165 copying lhc/binf/variant/__main__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/variant 2023-09-15T16:35:06,166 copying lhc/binf/variant/variant_effect.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/variant 2023-09-15T16:35:06,169 creating build/lib.linux-armv7l-cpython-311/lhc/binf/sequence 2023-09-15T16:35:06,170 copying lhc/binf/sequence/sequence_generator.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/sequence 2023-09-15T16:35:06,171 copying lhc/binf/sequence/reverse_complement.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/sequence 2023-09-15T16:35:06,173 copying lhc/binf/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/sequence 2023-09-15T16:35:06,175 copying lhc/binf/sequence/dicodonshuffle.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/sequence 2023-09-15T16:35:06,177 copying lhc/binf/sequence/__main__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/sequence 2023-09-15T16:35:06,179 creating build/lib.linux-armv7l-cpython-311/lhc/binf/align 2023-09-15T16:35:06,180 copying lhc/binf/align/local_alignment.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/align 2023-09-15T16:35:06,182 copying lhc/binf/align/alignment.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/align 2023-09-15T16:35:06,184 copying lhc/binf/align/semiglobal_alignment.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/align 2023-09-15T16:35:06,185 copying lhc/binf/align/global_alignment.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/align 2023-09-15T16:35:06,187 copying lhc/binf/align/score.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/align 2023-09-15T16:35:06,188 copying lhc/binf/align/character_map.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/align 2023-09-15T16:35:06,190 copying lhc/binf/align/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/align 2023-09-15T16:35:06,191 copying lhc/binf/align/__main__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/align 2023-09-15T16:35:06,193 copying lhc/binf/align/aligner.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/align 2023-09-15T16:35:06,195 creating build/lib.linux-armv7l-cpython-311/lhc/binf/alignment/tools 2023-09-15T16:35:06,196 copying lhc/binf/alignment/tools/call_variants.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/alignment/tools 2023-09-15T16:35:06,198 copying lhc/binf/alignment/tools/trim_gaps.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/alignment/tools 2023-09-15T16:35:06,200 copying lhc/binf/alignment/tools/mismatch_filter.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/alignment/tools 2023-09-15T16:35:06,201 copying lhc/binf/alignment/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/alignment/tools 2023-09-15T16:35:06,203 copying lhc/binf/alignment/tools/get_consensus.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/alignment/tools 2023-09-15T16:35:06,204 copying lhc/binf/alignment/tools/strand.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/alignment/tools 2023-09-15T16:35:06,207 creating build/lib.linux-armv7l-cpython-311/lhc/binf/loci/tools 2023-09-15T16:35:06,208 copying lhc/binf/loci/tools/view.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/loci/tools 2023-09-15T16:35:06,209 copying lhc/binf/loci/tools/kmer_filter.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/loci/tools 2023-09-15T16:35:06,211 copying lhc/binf/loci/tools/closest.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/loci/tools 2023-09-15T16:35:06,213 copying lhc/binf/loci/tools/generate.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/loci/tools 2023-09-15T16:35:06,215 copying lhc/binf/loci/tools/filter.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/loci/tools 2023-09-15T16:35:06,217 copying lhc/binf/loci/tools/stats.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/loci/tools 2023-09-15T16:35:06,218 copying lhc/binf/loci/tools/deduplicate.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/loci/tools 2023-09-15T16:35:06,220 copying lhc/binf/loci/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/loci/tools 2023-09-15T16:35:06,221 copying lhc/binf/loci/tools/flank.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/loci/tools 2023-09-15T16:35:06,223 copying lhc/binf/loci/tools/shear.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/loci/tools 2023-09-15T16:35:06,225 copying lhc/binf/loci/tools/extend.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/loci/tools 2023-09-15T16:35:06,227 copying lhc/binf/loci/tools/query.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/loci/tools 2023-09-15T16:35:06,229 creating build/lib.linux-armv7l-cpython-311/lhc/binf/misc/tools 2023-09-15T16:35:06,230 copying lhc/binf/misc/tools/cs_to_table.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/misc/tools 2023-09-15T16:35:06,232 copying lhc/binf/misc/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/misc/tools 2023-09-15T16:35:06,233 creating build/lib.linux-armv7l-cpython-311/lhc/binf/variant/tools 2023-09-15T16:35:06,234 copying lhc/binf/variant/tools/annotate.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/variant/tools 2023-09-15T16:35:06,236 copying lhc/binf/variant/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/variant/tools 2023-09-15T16:35:06,238 creating build/lib.linux-armv7l-cpython-311/lhc/binf/sequence/tools 2023-09-15T16:35:06,239 copying lhc/binf/sequence/tools/view.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/sequence/tools 2023-09-15T16:35:06,241 copying lhc/binf/sequence/tools/split.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/sequence/tools 2023-09-15T16:35:06,242 copying lhc/binf/sequence/tools/unique.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/sequence/tools 2023-09-15T16:35:06,244 copying lhc/binf/sequence/tools/filter.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/sequence/tools 2023-09-15T16:35:06,245 copying lhc/binf/sequence/tools/stat_.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/sequence/tools 2023-09-15T16:35:06,247 copying lhc/binf/sequence/tools/extract.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/sequence/tools 2023-09-15T16:35:06,249 copying lhc/binf/sequence/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/sequence/tools 2023-09-15T16:35:06,250 creating build/lib.linux-armv7l-cpython-311/lhc/binf/sequence/digen 2023-09-15T16:35:06,251 copying lhc/binf/sequence/digen/digen.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/sequence/digen 2023-09-15T16:35:06,253 copying lhc/binf/sequence/digen/setup.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/sequence/digen 2023-09-15T16:35:06,254 copying lhc/binf/sequence/digen/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/binf/sequence/digen 2023-09-15T16:35:06,256 creating build/lib.linux-armv7l-cpython-311/lhc/io/alignment 2023-09-15T16:35:06,257 copying lhc/io/alignment/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/alignment 2023-09-15T16:35:06,259 creating build/lib.linux-armv7l-cpython-311/lhc/io/vcf 2023-09-15T16:35:06,260 copying lhc/io/vcf/index.py -> build/lib.linux-armv7l-cpython-311/lhc/io/vcf 2023-09-15T16:35:06,262 copying lhc/io/vcf/iterator.py -> build/lib.linux-armv7l-cpython-311/lhc/io/vcf 2023-09-15T16:35:06,263 copying lhc/io/vcf/set_.py -> build/lib.linux-armv7l-cpython-311/lhc/io/vcf 2023-09-15T16:35:06,265 copying lhc/io/vcf/merger.py -> build/lib.linux-armv7l-cpython-311/lhc/io/vcf 2023-09-15T16:35:06,267 copying lhc/io/vcf/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/vcf 2023-09-15T16:35:06,269 copying lhc/io/vcf/__main__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/vcf 2023-09-15T16:35:06,271 creating build/lib.linux-armv7l-cpython-311/lhc/io/txt 2023-09-15T16:35:06,272 copying lhc/io/txt/iterator.py -> build/lib.linux-armv7l-cpython-311/lhc/io/txt 2023-09-15T16:35:06,274 copying lhc/io/txt/set_.py -> build/lib.linux-armv7l-cpython-311/lhc/io/txt 2023-09-15T16:35:06,275 copying lhc/io/txt/format_parser.py -> build/lib.linux-armv7l-cpython-311/lhc/io/txt 2023-09-15T16:35:06,277 copying lhc/io/txt/filter.py -> build/lib.linux-armv7l-cpython-311/lhc/io/txt 2023-09-15T16:35:06,278 copying lhc/io/txt/formatters.py -> build/lib.linux-armv7l-cpython-311/lhc/io/txt 2023-09-15T16:35:06,280 copying lhc/io/txt/indexed_set.py -> build/lib.linux-armv7l-cpython-311/lhc/io/txt 2023-09-15T16:35:06,282 copying lhc/io/txt/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/txt 2023-09-15T16:35:06,283 copying lhc/io/txt/__main__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/txt 2023-09-15T16:35:06,285 creating build/lib.linux-armv7l-cpython-311/lhc/io/gbk 2023-09-15T16:35:06,286 copying lhc/io/gbk/iterator.py -> build/lib.linux-armv7l-cpython-311/lhc/io/gbk 2023-09-15T16:35:06,289 copying lhc/io/gbk/sequence_set.py -> build/lib.linux-armv7l-cpython-311/lhc/io/gbk 2023-09-15T16:35:06,290 copying lhc/io/gbk/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/gbk 2023-09-15T16:35:06,292 copying lhc/io/gbk/__main__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/gbk 2023-09-15T16:35:06,294 creating build/lib.linux-armv7l-cpython-311/lhc/io/locus 2023-09-15T16:35:06,296 copying lhc/io/locus/repeat_masker.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2023-09-15T16:35:06,298 copying lhc/io/locus/gff.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2023-09-15T16:35:06,300 copying lhc/io/locus/region.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2023-09-15T16:35:06,302 copying lhc/io/locus/locus_file.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2023-09-15T16:35:06,304 copying lhc/io/locus/sam.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2023-09-15T16:35:06,305 copying lhc/io/locus/paf.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2023-09-15T16:35:06,307 copying lhc/io/locus/gbk.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2023-09-15T16:35:06,309 copying lhc/io/locus/gtf.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2023-09-15T16:35:06,310 copying lhc/io/locus/embl.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2023-09-15T16:35:06,312 copying lhc/io/locus/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2023-09-15T16:35:06,314 copying lhc/io/locus/bed.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2023-09-15T16:35:06,316 creating build/lib.linux-armv7l-cpython-311/lhc/io/variant 2023-09-15T16:35:06,317 copying lhc/io/variant/vcf.py -> build/lib.linux-armv7l-cpython-311/lhc/io/variant 2023-09-15T16:35:06,319 copying lhc/io/variant/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/variant 2023-09-15T16:35:06,320 copying lhc/io/variant/variant_file.py -> build/lib.linux-armv7l-cpython-311/lhc/io/variant 2023-09-15T16:35:06,322 creating build/lib.linux-armv7l-cpython-311/lhc/io/sequence 2023-09-15T16:35:06,323 copying lhc/io/sequence/fasta.py -> build/lib.linux-armv7l-cpython-311/lhc/io/sequence 2023-09-15T16:35:06,325 copying lhc/io/sequence/sequence_file.py -> build/lib.linux-armv7l-cpython-311/lhc/io/sequence 2023-09-15T16:35:06,327 copying lhc/io/sequence/fastq.py -> build/lib.linux-armv7l-cpython-311/lhc/io/sequence 2023-09-15T16:35:06,328 copying lhc/io/sequence/embl.py -> build/lib.linux-armv7l-cpython-311/lhc/io/sequence 2023-09-15T16:35:06,330 copying lhc/io/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/sequence 2023-09-15T16:35:06,332 creating build/lib.linux-armv7l-cpython-311/lhc/io/maf 2023-09-15T16:35:06,333 copying lhc/io/maf/index.py -> build/lib.linux-armv7l-cpython-311/lhc/io/maf 2023-09-15T16:35:06,335 copying lhc/io/maf/iterator.py -> build/lib.linux-armv7l-cpython-311/lhc/io/maf 2023-09-15T16:35:06,337 copying lhc/io/maf/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/maf 2023-09-15T16:35:06,338 copying lhc/io/maf/__main__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/maf 2023-09-15T16:35:06,340 creating build/lib.linux-armv7l-cpython-311/lhc/io/methpat 2023-09-15T16:35:06,341 copying lhc/io/methpat/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/methpat 2023-09-15T16:35:06,343 copying lhc/io/methpat/__main__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/methpat 2023-09-15T16:35:06,346 creating build/lib.linux-armv7l-cpython-311/lhc/io/fasta 2023-09-15T16:35:06,347 copying lhc/io/fasta/index.py -> build/lib.linux-armv7l-cpython-311/lhc/io/fasta 2023-09-15T16:35:06,349 copying lhc/io/fasta/iterator.py -> build/lib.linux-armv7l-cpython-311/lhc/io/fasta 2023-09-15T16:35:06,351 copying lhc/io/fasta/inorder_access_set.py -> build/lib.linux-armv7l-cpython-311/lhc/io/fasta 2023-09-15T16:35:06,353 copying lhc/io/fasta/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/fasta 2023-09-15T16:35:06,354 copying lhc/io/fasta/__main__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/fasta 2023-09-15T16:35:06,357 creating build/lib.linux-armv7l-cpython-311/lhc/io/fastq 2023-09-15T16:35:06,358 copying lhc/io/fastq/iterator.py -> build/lib.linux-armv7l-cpython-311/lhc/io/fastq 2023-09-15T16:35:06,360 copying lhc/io/fastq/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/fastq 2023-09-15T16:35:06,361 copying lhc/io/fastq/__main__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/fastq 2023-09-15T16:35:06,364 creating build/lib.linux-armv7l-cpython-311/lhc/io/vcf/tools 2023-09-15T16:35:06,364 copying lhc/io/vcf/tools/difference.py -> build/lib.linux-armv7l-cpython-311/lhc/io/vcf/tools 2023-09-15T16:35:06,366 copying lhc/io/vcf/tools/merge.py -> build/lib.linux-armv7l-cpython-311/lhc/io/vcf/tools 2023-09-15T16:35:06,368 copying lhc/io/vcf/tools/index.py -> build/lib.linux-armv7l-cpython-311/lhc/io/vcf/tools 2023-09-15T16:35:06,370 copying lhc/io/vcf/tools/sort.py -> build/lib.linux-armv7l-cpython-311/lhc/io/vcf/tools 2023-09-15T16:35:06,371 copying lhc/io/vcf/tools/filter.py -> build/lib.linux-armv7l-cpython-311/lhc/io/vcf/tools 2023-09-15T16:35:06,373 copying lhc/io/vcf/tools/compare.py -> build/lib.linux-armv7l-cpython-311/lhc/io/vcf/tools 2023-09-15T16:35:06,375 copying lhc/io/vcf/tools/shift.py -> build/lib.linux-armv7l-cpython-311/lhc/io/vcf/tools 2023-09-15T16:35:06,377 copying lhc/io/vcf/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/vcf/tools 2023-09-15T16:35:06,378 copying lhc/io/vcf/tools/sample.py -> build/lib.linux-armv7l-cpython-311/lhc/io/vcf/tools 2023-09-15T16:35:06,380 copying lhc/io/vcf/tools/split_alt.py -> build/lib.linux-armv7l-cpython-311/lhc/io/vcf/tools 2023-09-15T16:35:06,381 copying lhc/io/vcf/tools/trim_alt.py -> build/lib.linux-armv7l-cpython-311/lhc/io/vcf/tools 2023-09-15T16:35:06,384 creating build/lib.linux-armv7l-cpython-311/lhc/io/txt/tools 2023-09-15T16:35:06,385 copying lhc/io/txt/tools/fetch.py -> build/lib.linux-armv7l-cpython-311/lhc/io/txt/tools 2023-09-15T16:35:06,387 copying lhc/io/txt/tools/index.py -> build/lib.linux-armv7l-cpython-311/lhc/io/txt/tools 2023-09-15T16:35:06,388 copying lhc/io/txt/tools/sort.py -> build/lib.linux-armv7l-cpython-311/lhc/io/txt/tools 2023-09-15T16:35:06,390 copying lhc/io/txt/tools/compress.py -> build/lib.linux-armv7l-cpython-311/lhc/io/txt/tools 2023-09-15T16:35:06,392 copying lhc/io/txt/tools/check_format.py -> build/lib.linux-armv7l-cpython-311/lhc/io/txt/tools 2023-09-15T16:35:06,394 copying lhc/io/txt/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/txt/tools 2023-09-15T16:35:06,395 copying lhc/io/txt/tools/decompress.py -> build/lib.linux-armv7l-cpython-311/lhc/io/txt/tools 2023-09-15T16:35:06,397 copying lhc/io/txt/tools/join.py -> build/lib.linux-armv7l-cpython-311/lhc/io/txt/tools 2023-09-15T16:35:06,399 creating build/lib.linux-armv7l-cpython-311/lhc/io/gbk/tools 2023-09-15T16:35:06,400 copying lhc/io/gbk/tools/split.py -> build/lib.linux-armv7l-cpython-311/lhc/io/gbk/tools 2023-09-15T16:35:06,402 copying lhc/io/gbk/tools/extract.py -> build/lib.linux-armv7l-cpython-311/lhc/io/gbk/tools 2023-09-15T16:35:06,404 copying lhc/io/gbk/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/gbk/tools 2023-09-15T16:35:06,405 creating build/lib.linux-armv7l-cpython-311/lhc/io/fasta/tools 2023-09-15T16:35:06,406 copying lhc/io/fasta/tools/index.py -> build/lib.linux-armv7l-cpython-311/lhc/io/fasta/tools 2023-09-15T16:35:06,408 copying lhc/io/fasta/tools/wrap.py -> build/lib.linux-armv7l-cpython-311/lhc/io/fasta/tools 2023-09-15T16:35:06,410 copying lhc/io/fasta/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/fasta/tools 2023-09-15T16:35:06,412 creating build/lib.linux-armv7l-cpython-311/lhc/io/fastq/tools 2023-09-15T16:35:06,413 copying lhc/io/fastq/tools/split.py -> build/lib.linux-armv7l-cpython-311/lhc/io/fastq/tools 2023-09-15T16:35:06,415 copying lhc/io/fastq/tools/filter.py -> build/lib.linux-armv7l-cpython-311/lhc/io/fastq/tools 2023-09-15T16:35:06,417 copying lhc/io/fastq/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/fastq/tools 2023-09-15T16:35:06,418 running egg_info 2023-09-15T16:35:06,474 writing lhc_python.egg-info/PKG-INFO 2023-09-15T16:35:06,477 writing dependency_links to lhc_python.egg-info/dependency_links.txt 2023-09-15T16:35:06,479 writing requirements to lhc_python.egg-info/requires.txt 2023-09-15T16:35:06,480 writing top-level names to lhc_python.egg-info/top_level.txt 2023-09-15T16:35:06,528 reading manifest file 'lhc_python.egg-info/SOURCES.txt' 2023-09-15T16:35:06,534 reading manifest template 'MANIFEST.in' 2023-09-15T16:35:06,536 warning: no files found matching '*.txt' under directory 'docs' 2023-09-15T16:35:06,536 adding license file 'LICENSE.txt' 2023-09-15T16:35:06,545 writing manifest file 'lhc_python.egg-info/SOURCES.txt' 2023-09-15T16:35:06,548 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'lhc.data' is absent from the `packages` configuration. 2023-09-15T16:35:06,549 !! 2023-09-15T16:35:06,550 ******************************************************************************** 2023-09-15T16:35:06,550 ############################ 2023-09-15T16:35:06,551 # Package would be ignored # 2023-09-15T16:35:06,551 ############################ 2023-09-15T16:35:06,552 Python recognizes 'lhc.data' as an importable package[^1], 2023-09-15T16:35:06,552 but it is absent from setuptools' `packages` configuration. 2023-09-15T16:35:06,553 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-15T16:35:06,553 package, please make sure that 'lhc.data' is explicitly added 2023-09-15T16:35:06,554 to the `packages` configuration field. 2023-09-15T16:35:06,554 Alternatively, you can also rely on setuptools' discovery methods 2023-09-15T16:35:06,555 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-15T16:35:06,555 instead of `find_packages(...)`/`find:`). 2023-09-15T16:35:06,556 You can read more about "package discovery" on setuptools documentation page: 2023-09-15T16:35:06,557 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-15T16:35:06,559 If you don't want 'lhc.data' to be distributed and are 2023-09-15T16:35:06,559 already explicitly excluding 'lhc.data' via 2023-09-15T16:35:06,560 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-15T16:35:06,560 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-15T16:35:06,561 combination with a more fine grained `package-data` configuration. 2023-09-15T16:35:06,561 You can read more about "package data files" on setuptools documentation page: 2023-09-15T16:35:06,562 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-15T16:35:06,564 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-15T16:35:06,565 even if it does not contain any `.py` files. 2023-09-15T16:35:06,565 On the other hand, currently there is no concept of package data 2023-09-15T16:35:06,566 directory, all directories are treated like packages. 2023-09-15T16:35:06,566 ******************************************************************************** 2023-09-15T16:35:06,567 !! 2023-09-15T16:35:06,568 check.warn(importable) 2023-09-15T16:35:06,569 creating build/lib.linux-armv7l-cpython-311/lhc/data 2023-09-15T16:35:06,569 copying lhc/data/gc.prt -> build/lib.linux-armv7l-cpython-311/lhc/data 2023-09-15T16:35:06,579 running build_ext 2023-09-15T16:35:07,083 building 'lhc.misc.bitap' extension 2023-09-15T16:35:07,084 creating build/temp.linux-armv7l-cpython-311 2023-09-15T16:35:07,084 creating build/temp.linux-armv7l-cpython-311/lib 2023-09-15T16:35:07,085 creating build/temp.linux-armv7l-cpython-311/lib/bitap 2023-09-15T16:35:07,086 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilib/bitap -I/usr/include/python3.11 -c lib/bitap/bitap.cpp -o build/temp.linux-armv7l-cpython-311/lib/bitap/bitap.o 2023-09-15T16:35:07,141 lib/bitap/bitap.cpp:1:10: fatal error: bitap.h: No such file or directory 2023-09-15T16:35:07,142 1 | #include "bitap.h" 2023-09-15T16:35:07,143 | ^~~~~~~~~ 2023-09-15T16:35:07,143 compilation terminated. 2023-09-15T16:35:07,145 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-15T16:35:07,285 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-15T16:35:07,298 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-15T16:35:07,298 exec(compile('"'"''"'"''"'"' 2023-09-15T16:35:07,298 # This is -- a caller that pip uses to run setup.py 2023-09-15T16:35:07,298 # 2023-09-15T16:35:07,298 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-15T16:35:07,298 # import from `distutils.core` to work with newer packaging standards. 2023-09-15T16:35:07,298 # - It provides a clear error message when setuptools is not installed. 2023-09-15T16:35:07,298 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-15T16:35:07,298 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-15T16:35:07,298 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-15T16:35:07,298 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-15T16:35:07,298 import os, sys, tokenize 2023-09-15T16:35:07,298 2023-09-15T16:35:07,298 try: 2023-09-15T16:35:07,298 import setuptools 2023-09-15T16:35:07,298 except ImportError as error: 2023-09-15T16:35:07,298 print( 2023-09-15T16:35:07,298 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-15T16:35:07,298 "the build environment.", 2023-09-15T16:35:07,298 file=sys.stderr, 2023-09-15T16:35:07,298 ) 2023-09-15T16:35:07,298 sys.exit(1) 2023-09-15T16:35:07,298 2023-09-15T16:35:07,298 __file__ = %r 2023-09-15T16:35:07,298 sys.argv[0] = __file__ 2023-09-15T16:35:07,298 2023-09-15T16:35:07,298 if os.path.exists(__file__): 2023-09-15T16:35:07,298 filename = __file__ 2023-09-15T16:35:07,298 with tokenize.open(__file__) as f: 2023-09-15T16:35:07,298 setup_py_code = f.read() 2023-09-15T16:35:07,298 else: 2023-09-15T16:35:07,298 filename = "" 2023-09-15T16:35:07,298 setup_py_code = "from setuptools import setup; setup()" 2023-09-15T16:35:07,298 2023-09-15T16:35:07,298 exec(compile(setup_py_code, filename, "exec")) 2023-09-15T16:35:07,298 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-wcytfi7k/lhc-python_5c5f71c51a4a4477807c2e4d0f949601/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-sn2oqiy3[/] 2023-09-15T16:35:07,299 [bold magenta]cwd[/]: /tmp/pip-wheel-wcytfi7k/lhc-python_5c5f71c51a4a4477807c2e4d0f949601/ 2023-09-15T16:35:07,299 Building wheel for lhc-python (setup.py): finished with status 'error' 2023-09-15T16:35:07,301 ERROR: Failed building wheel for lhc-python 2023-09-15T16:35:07,302 Running setup.py clean for lhc-python 2023-09-15T16:35:07,303 Running command python setup.py clean 2023-09-15T16:35:08,307 running clean 2023-09-15T16:35:08,351 removing 'build/temp.linux-armv7l-cpython-311' (and everything under it) 2023-09-15T16:35:08,354 removing 'build/lib.linux-armv7l-cpython-311' (and everything under it) 2023-09-15T16:35:08,420 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-09-15T16:35:08,421 'build/scripts-3.11' does not exist -- can't clean it 2023-09-15T16:35:08,422 removing 'build' 2023-09-15T16:35:08,527 Failed to build lhc-python 2023-09-15T16:35:08,528 ERROR: Failed to build one or more wheels 2023-09-15T16:35:08,530 Exception information: 2023-09-15T16:35:08,530 Traceback (most recent call last): 2023-09-15T16:35:08,530 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-15T16:35:08,530 status = run_func(*args) 2023-09-15T16:35:08,530 ^^^^^^^^^^^^^^^ 2023-09-15T16:35:08,530 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-15T16:35:08,530 return func(self, options, args) 2023-09-15T16:35:08,530 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-15T16:35:08,530 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-15T16:35:08,530 raise CommandError("Failed to build one or more wheels") 2023-09-15T16:35:08,530 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-15T16:35:08,533 Removed build tracker: '/tmp/pip-build-tracker-nrxh519i'