2023-09-15T18:06:01,179 Created temporary directory: /tmp/pip-build-tracker-u4ow627h 2023-09-15T18:06:01,180 Initialized build tracking at /tmp/pip-build-tracker-u4ow627h 2023-09-15T18:06:01,181 Created build tracker: /tmp/pip-build-tracker-u4ow627h 2023-09-15T18:06:01,181 Entered build tracker: /tmp/pip-build-tracker-u4ow627h 2023-09-15T18:06:01,182 Created temporary directory: /tmp/pip-wheel-y6blk8iu 2023-09-15T18:06:01,185 Created temporary directory: /tmp/pip-ephem-wheel-cache-i3xw909e 2023-09-15T18:06:01,212 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-15T18:06:01,216 2 location(s) to search for versions of scirpy: 2023-09-15T18:06:01,216 * https://pypi.org/simple/scirpy/ 2023-09-15T18:06:01,216 * https://www.piwheels.org/simple/scirpy/ 2023-09-15T18:06:01,217 Fetching project page and analyzing links: https://pypi.org/simple/scirpy/ 2023-09-15T18:06:01,218 Getting page https://pypi.org/simple/scirpy/ 2023-09-15T18:06:01,219 Found index url https://pypi.org/simple/ 2023-09-15T18:06:01,434 Fetched page https://pypi.org/simple/scirpy/ as application/vnd.pypi.simple.v1+json 2023-09-15T18:06:01,445 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/2b/87/294b2db5a86fc0420d8472a732e49c53edfea03eea6f7244c0d8178c2eef/scirpy-0.0.1-py3-none-any.whl (from https://pypi.org/simple/scirpy/) 2023-09-15T18:06:01,445 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/c1/0d/55deb716b55bf3fdba97a13b414a6435504b58c2783541e3a648b4ce524b/scirpy-0.1-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:01,446 Found link https://files.pythonhosted.org/packages/e4/e7/968694b1e6bef7fabd4f3d51ba8107e8c2531b3269659cd9efb330485006/scirpy-0.1.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6), version: 0.1 2023-09-15T18:06:01,447 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/5d/14/f453797774d231cf8d873cc4017b57202ef6b9e63d88336baadd2cfbef2a/scirpy-0.1.1-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:01,448 Found link https://files.pythonhosted.org/packages/6f/98/93df2761c6f2f9db818972b716671e18fb53a54229d2bd4f9ee0093cb1a2/scirpy-0.1.1.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6), version: 0.1.1 2023-09-15T18:06:01,449 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/4e/d3/154dc4b761af9cb84c2847f6845ec5804cdd560fc46ac9dba7d3062fbc70/scirpy-0.1.2-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:01,450 Found link https://files.pythonhosted.org/packages/b5/66/35b338b503b03f4402cef50d194df7a2f5dfbf9a6b594f1d64b1382ba1f3/scirpy-0.1.2.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6), version: 0.1.2 2023-09-15T18:06:01,450 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/e4/35/e475df47b99a610357483f8d375dab86ef81b91ae94f5d822360cf843a81/scirpy-0.2-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:01,451 Found link https://files.pythonhosted.org/packages/18/75/627553f60af1b1b636e6cbf038cf6ee60575ece206a5e737bcf829f78682/scirpy-0.2.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6), version: 0.2 2023-09-15T18:06:01,452 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/8e/af/49fd3d1bcc40ba97c5dc3be27e88899101a1f7e368fdcb3c6170a2e0b45e/scirpy-0.3-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:01,453 Found link https://files.pythonhosted.org/packages/db/07/9027996c75a175c8db97bfc5353eead9d44f50d6f9af62520cb513ba7076/scirpy-0.3.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6), version: 0.3 2023-09-15T18:06:01,454 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/9f/99/2b8a921ef3b793407d56b60651d164a2c1a3560e46cc31362552680c87de/scirpy-0.4-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:01,455 Found link https://files.pythonhosted.org/packages/b7/5b/94a919bbc3ee1e8a62beb95c79f8c6183113f5946b9e1baa6d5ef5ecb772/scirpy-0.4.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6), version: 0.4 2023-09-15T18:06:01,456 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/de/19/df4d8de48fbab8a927bbcff075c4ce209cf59e985b314acb2e0c91c9a76a/scirpy-0.4.1-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:01,456 Found link https://files.pythonhosted.org/packages/76/3c/413d60aaf3b1b7e0b6d27c2f9a7edab73bcde8d411848998b4670c7557d8/scirpy-0.4.1.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6), version: 0.4.1 2023-09-15T18:06:01,457 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/8e/2b/37bcb68bb8979f0a0b1748d237d13a93f6d78bf757af31c46321fe7dffec/scirpy-0.4.2-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:01,458 Found link https://files.pythonhosted.org/packages/f1/1c/69702260034189b09de8eee0ba214a498f0b253e059140543ca3ca348e7e/scirpy-0.4.2.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6), version: 0.4.2 2023-09-15T18:06:01,458 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/1e/d1/51afe3f1c0dfeaca34e4596dd717df2bc3eca6246c7ec9ccfe8b9213111d/scirpy-0.5.0-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:01,459 Found link https://files.pythonhosted.org/packages/9d/73/a8cf8bc4105958641eed539a6c81fe51723c339955ec9fc5ec2242afe4c6/scirpy-0.5.0.tar.gz (from 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https://files.pythonhosted.org/packages/84/9e/8b43cdf19c65935c68cc88dda9e16b25dd4876791f179918097f1d24a6e4/scirpy-0.6.1.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6), version: 0.6.1 2023-09-15T18:06:01,463 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/49/58/f738f345da5ba61baaaeee50030c1a7e054c49d83a348d440e770ba8765f/scirpy-0.7.0-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7) 2023-09-15T18:06:01,464 Found link https://files.pythonhosted.org/packages/7d/9c/696fa2e8b375102c01438f48bfba391e781b5deac62cafedfed662d974ca/scirpy-0.7.0.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7), version: 0.7.0 2023-09-15T18:06:01,465 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/bd/6f/cd4ce286c928a4febe63532c2ca1b0ed570f018f9545eb0274dd2a588504/scirpy-0.7.1-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7) 2023-09-15T18:06:01,465 Found link https://files.pythonhosted.org/packages/23/a7/8d747c84137a1e531297ec6214a266a8e4fcc612fdc733941bed32d817a0/scirpy-0.7.1.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7), version: 0.7.1 2023-09-15T18:06:01,466 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/22/4b/100ce2a068b154236e9680826ccf88bb044f3ab88abab2d679e6a7d891ca/scirpy-0.8.0-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7) 2023-09-15T18:06:01,467 Found link https://files.pythonhosted.org/packages/23/0c/a6fea62e0108d0d6da6a95fc66d6294c442adab16e826cfc86c098a94516/scirpy-0.8.0.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7), version: 0.8.0 2023-09-15T18:06:01,468 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/1b/5f/74307d956743fb0a8b2df31e097c566b41e51e2f5a199d497e59cdc68b1d/scirpy-0.9.0-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7) 2023-09-15T18:06:01,469 Found link https://files.pythonhosted.org/packages/d9/6e/fe4eb190bc89f54014dd60ff6ea0154bce51a6b57417fd6fe6229a1fefc9/scirpy-0.9.0.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7), version: 0.9.0 2023-09-15T18:06:01,469 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/05/95/feeb11b123bf186801911ad7a9c6ee4004f6e21c288bf8c032a332ac85c1/scirpy-0.9.1-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7) 2023-09-15T18:06:01,470 Found link https://files.pythonhosted.org/packages/e2/b8/d088a38f5f3db0901415ede0c2a202e885eaceea78eff8ee68701fa0c1dc/scirpy-0.9.1.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7), version: 0.9.1 2023-09-15T18:06:01,470 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/80/cb/393c2849475c3a1b49ff533130f18e1d8382ba74591abf0bc27806519c81/scirpy-0.10.0-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7) 2023-09-15T18:06:01,471 Found link https://files.pythonhosted.org/packages/c9/7f/5df1ca820d517fcf8cce6ec3ca1a569e57ce17e225446b606cab9cb38b8c/scirpy-0.10.0.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7), version: 0.10.0 2023-09-15T18:06:01,472 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/e0/09/eae7acbff3a8e82722378549ea5fddd07c2711d0aa8b2bf9056bae31c176/scirpy-0.10.1-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7) 2023-09-15T18:06:01,473 Found link https://files.pythonhosted.org/packages/12/9b/171147b32e198a14c5842216ed08b8eaea20472057366abab2cfe83c3ff1/scirpy-0.10.1.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7), version: 0.10.1 2023-09-15T18:06:01,473 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/df/99/f9d8a66d824151d3ee0e7bcba9ac87fb40c411506e8e5f5391762e90b8ab/scirpy-0.11.0-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7) 2023-09-15T18:06:01,475 Found link https://files.pythonhosted.org/packages/c8/57/775aab2598fdce44dc61b229caebaa27c947248e7ba8e94a0efa23864915/scirpy-0.11.0.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7), version: 0.11.0 2023-09-15T18:06:01,475 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/6f/80/075a295e0b6c6532da10e46b367a85a56d5d70d85de8b90979dcd6632960/scirpy-0.11.1-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7) 2023-09-15T18:06:01,476 Found link https://files.pythonhosted.org/packages/a3/b4/2d2703afc91286704d7b9d0f6aea416a2c61ab8ba60521e1bdafc7b19a42/scirpy-0.11.1.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7), version: 0.11.1 2023-09-15T18:06:01,477 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/7e/b5/8b50aa1c023dd8fda3662903f521df1ef0121a5f1ed9edad327841190804/scirpy-0.11.2-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7) 2023-09-15T18:06:01,478 Found link https://files.pythonhosted.org/packages/29/4f/586959086f4cbed10ccfd853e7d67feb0b2fb498ea2caad548747fa7146a/scirpy-0.11.2.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7), version: 0.11.2 2023-09-15T18:06:01,478 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/d2/2f/837bc1e1adaa48205ff478a9f301b755dcbfbb9edc7d89c4d0785eb5d12a/scirpy-0.12.0-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7) 2023-09-15T18:06:01,479 Found link https://files.pythonhosted.org/packages/40/8c/b96847fd55f5c1c345f33c310792871e47524b0dae71bc64d4357c6c1be1/scirpy-0.12.0.tar.gz (from 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(requires-python:>=3.9) 2023-09-15T18:06:01,485 Found link https://files.pythonhosted.org/packages/7c/44/ff7efdfd82ae8c591f390d6cb2608c4e0ec436a52d96c5a8a3f04497e175/scirpy-0.13.0.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>=3.9), version: 0.13.0 2023-09-15T18:06:01,486 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/c6/c4/e53b19fdf492eb980aead34b62f3a84a3790896935891dbc4e6fe057347f/scirpy-0.13.1-py3-none-any.whl (from https://pypi.org/simple/scirpy/) (requires-python:>=3.9) 2023-09-15T18:06:01,486 Found link https://files.pythonhosted.org/packages/3d/bd/52f2ba4bac22649e64f8f52e4e58f76c0283aa1cc18a4c7788e0f8e00d73/scirpy-0.13.1.tar.gz (from https://pypi.org/simple/scirpy/) (requires-python:>=3.9), version: 0.13.1 2023-09-15T18:06:01,487 Fetching project page and analyzing links: https://www.piwheels.org/simple/scirpy/ 2023-09-15T18:06:01,488 Getting page https://www.piwheels.org/simple/scirpy/ 2023-09-15T18:06:01,490 Found index url https://www.piwheels.org/simple/ 2023-09-15T18:06:09,159 Fetched page https://www.piwheels.org/simple/scirpy/ as text/html 2023-09-15T18:06:09,171 Skipping link: No binaries permitted for scirpy: https://www.piwheels.org/simple/scirpy/scirpy-0.13.1-py3-none-any.whl#sha256=81b29e3418d77e4728684a0962f9d81ae8e1e2fef0b10943d563298856f703c2 (from https://www.piwheels.org/simple/scirpy/) (requires-python:>=3.9) 2023-09-15T18:06:09,173 Skipping link: No binaries permitted for scirpy: https://www.piwheels.org/simple/scirpy/scirpy-0.13.0-py3-none-any.whl#sha256=a981d396f6bdf969921b936b5893ca2fa3a888a64cd1cf4bb9dd43ac018cde9a (from https://www.piwheels.org/simple/scirpy/) (requires-python:>=3.9) 2023-09-15T18:06:09,174 Skipping link: No binaries permitted for scirpy: https://www.piwheels.org/simple/scirpy/scirpy-0.7.1-py3-none-any.whl#sha256=69e8dc9dae84cc51d9cb9477f01204b2b1a4c59c77603b5d61c6783377c1ef04 (from https://www.piwheels.org/simple/scirpy/) (requires-python:>= 3.7) 2023-09-15T18:06:09,175 Skipping link: No binaries permitted for scirpy: https://www.piwheels.org/simple/scirpy/scirpy-0.7.0-py3-none-any.whl#sha256=02472c885a3b34de4c2b9efc2c5245c89f0797c5bd1e290e4a13d248b6e48c48 (from https://www.piwheels.org/simple/scirpy/) (requires-python:>= 3.7) 2023-09-15T18:06:09,176 Skipping link: No binaries permitted for scirpy: https://www.piwheels.org/simple/scirpy/scirpy-0.6.1-py3-none-any.whl#sha256=cbbcc5359458e7356a028fd1df93b29a2ad70b144aaa1e60d0b8c987b838d09a (from https://www.piwheels.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:09,177 Skipping link: No binaries permitted for scirpy: https://www.piwheels.org/simple/scirpy/scirpy-0.6.0-py3-none-any.whl#sha256=4159c1d1d2276b4117f1480988e0ed6c0274423f2eb90025b3b57f00a9ba52cb (from https://www.piwheels.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:09,177 Skipping link: No binaries permitted for scirpy: https://www.piwheels.org/simple/scirpy/scirpy-0.5.0-py3-none-any.whl#sha256=64fe5acd51fdfc526c91120194c62a550442213d24e211a65413d5248bd59210 (from https://www.piwheels.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:09,178 Skipping link: No binaries permitted for scirpy: https://www.piwheels.org/simple/scirpy/scirpy-0.4.2-py3-none-any.whl#sha256=94b375a1b22af39bb3521f68a7356de4e8a802f2332df1da934a5278bffa1517 (from https://www.piwheels.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:09,179 Skipping link: No binaries permitted for scirpy: https://www.piwheels.org/simple/scirpy/scirpy-0.4.1-py3-none-any.whl#sha256=94277a3c51aaaa08bfab88b21fd94cf17e90dd64b7dfbbf9aba75797086281b1 (from https://www.piwheels.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:09,180 Skipping link: No binaries permitted for scirpy: https://www.piwheels.org/simple/scirpy/scirpy-0.4-py3-none-any.whl#sha256=5f29f02aeffe7e2b896f510b5d10b3acba723fe6737ee8848e4b2437d7299a74 (from https://www.piwheels.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:09,181 Skipping link: No binaries permitted for scirpy: https://www.piwheels.org/simple/scirpy/scirpy-0.3-py3-none-any.whl#sha256=0dd0b007ff097c3c5dda11f41ed6d6ec5ce58c888e6087660af54baac30da09a (from https://www.piwheels.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:09,182 Skipping link: No binaries permitted for scirpy: https://www.piwheels.org/simple/scirpy/scirpy-0.2-py3-none-any.whl#sha256=2e8f0e0c05a18e8de13fe274c1ed0cae0cbdeb36c750990292fc7df6a84d99b2 (from https://www.piwheels.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:09,183 Skipping link: No binaries permitted for scirpy: https://www.piwheels.org/simple/scirpy/scirpy-0.1.2-py3-none-any.whl#sha256=178a9a8d5541e5c985f13182b1efe798a6a23a13698564085b98adc23a44b48b (from https://www.piwheels.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:09,184 Skipping link: No binaries permitted for scirpy: https://www.piwheels.org/simple/scirpy/scirpy-0.1.1-py3-none-any.whl#sha256=ffb0ff81dc70197eb475e6b10036b2138a63947eb27a654a2669506c75667d27 (from https://www.piwheels.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:09,185 Skipping link: No binaries permitted for scirpy: https://www.piwheels.org/simple/scirpy/scirpy-0.1-py3-none-any.whl#sha256=e6dcea649c4445ca4da678562bacdf2a747a684ace877dc68d9d64710e70e137 (from https://www.piwheels.org/simple/scirpy/) (requires-python:>= 3.6) 2023-09-15T18:06:09,186 Skipping link: not a file: https://www.piwheels.org/simple/scirpy/ 2023-09-15T18:06:09,187 Skipping link: not a file: https://pypi.org/simple/scirpy/ 2023-09-15T18:06:09,225 Given no hashes to check 1 links for project 'scirpy': discarding no candidates 2023-09-15T18:06:09,244 Collecting scirpy==0.10.1 2023-09-15T18:06:09,246 Created temporary directory: /tmp/pip-unpack-9rl3ne5t 2023-09-15T18:06:09,385 Downloading scirpy-0.10.1.tar.gz (24.8 MB) 2023-09-15T18:06:13,463 Added scirpy==0.10.1 from https://files.pythonhosted.org/packages/12/9b/171147b32e198a14c5842216ed08b8eaea20472057366abab2cfe83c3ff1/scirpy-0.10.1.tar.gz to build tracker '/tmp/pip-build-tracker-u4ow627h' 2023-09-15T18:06:13,474 Created temporary directory: /tmp/pip-build-env-rtgxobcb 2023-09-15T18:06:13,479 Installing build dependencies: started 2023-09-15T18:06:13,480 Running command pip subprocess to install build dependencies 2023-09-15T18:06:14,635 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-15T18:06:15,124 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-15T18:06:15,126 Ignoring importlib_metadata: markers 'python_version < "3.8"' don't match your environment 2023-09-15T18:06:20,109 Collecting flit_core<4,>=2 2023-09-15T18:06:29,211 Using cached https://www.piwheels.org/simple/flit-core/flit_core-3.9.0-py3-none-any.whl (63 kB) 2023-09-15T18:06:29,582 Collecting setuptools_scm 2023-09-15T18:06:29,592 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/setuptools-scm/setuptools_scm-7.1.0-py3-none-any.whl 2023-09-15T18:06:39,113 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.1.0-py3-none-any.whl (43 kB) 2023-09-15T18:06:47,375 Collecting pytoml 2023-09-15T18:06:47,496 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/pytoml/pytoml-0.1.21-py2.py3-none-any.whl 2023-09-15T18:06:55,980 Using cached https://www.piwheels.org/simple/pytoml/pytoml-0.1.21-py2.py3-none-any.whl (8.5 kB) 2023-09-15T18:07:00,688 Collecting wheel 2023-09-15T18:07:00,704 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-15T18:07:00,888 Collecting packaging>=20.0 (from setuptools_scm) 2023-09-15T18:07:00,917 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/packaging/packaging-23.1-py3-none-any.whl 2023-09-15T18:07:07,356 Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB) 2023-09-15T18:07:10,092 Collecting setuptools (from setuptools_scm) 2023-09-15T18:07:10,093 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-15T18:07:10,316 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-15T18:07:11,436 Collecting typing-extensions (from setuptools_scm) 2023-09-15T18:07:11,450 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.7.1-py3-none-any.whl (33 kB) 2023-09-15T18:07:11,636 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-15T18:07:14,121 Installing collected packages: pytoml, wheel, typing-extensions, setuptools, packaging, flit_core, setuptools_scm 2023-09-15T18:07:14,405 Creating /tmp/pip-build-env-rtgxobcb/overlay/local/bin 2023-09-15T18:07:14,407 changing mode of /tmp/pip-build-env-rtgxobcb/overlay/local/bin/wheel to 755 2023-09-15T18:07:17,412 Successfully installed flit_core-3.9.0 packaging-23.1 pytoml-0.1.21 setuptools-68.2.2 setuptools_scm-7.1.0 typing-extensions-4.7.1 wheel-0.41.2 2023-09-15T18:07:23,464 Installing build dependencies: finished with status 'done' 2023-09-15T18:07:23,468 Getting requirements to build wheel: started 2023-09-15T18:07:23,469 Running command Getting requirements to build wheel 2023-09-15T18:07:23,805 Getting requirements to build wheel: finished with status 'done' 2023-09-15T18:07:24,087 Installing backend dependencies: started 2023-09-15T18:07:24,088 Running command pip subprocess to install backend dependencies 2023-09-15T18:07:25,309 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-15T18:07:26,085 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-15T18:07:31,918 Collecting networkx>=2.5 2023-09-15T18:07:32,410 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/networkx/networkx-3.1-py3-none-any.whl 2023-09-15T18:07:35,598 Using cached https://www.piwheels.org/simple/networkx/networkx-3.1-py3-none-any.whl (2.1 MB) 2023-09-15T18:07:35,925 Collecting anndata>=0.7.6 2023-09-15T18:07:35,939 Downloading https://www.piwheels.org/simple/anndata/anndata-0.9.2-py3-none-any.whl (104 kB) 2023-09-15T18:07:35,962 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 104.2/104.2 kB 7.4 MB/s eta 0:00:00 2023-09-15T18:07:40,115 Collecting python-igraph 2023-09-15T18:07:40,116 Obtaining dependency information for python-igraph from https://files.pythonhosted.org/packages/5d/f4/d7d8b02c6d40b9fe71fd7d57b9178cc9527c3bbdd252a6df3cc9fa83a3c8/python_igraph-0.10.8-py3-none-any.whl.metadata 2023-09-15T18:07:40,270 Downloading python_igraph-0.10.8-py3-none-any.whl.metadata (2.8 kB) 2023-09-15T18:07:40,648 Link requires a different Python (3.11.2 not in: '>=3.6,<3.9'): https://files.pythonhosted.org/packages/d1/68/d872f91bcb57c00c54835beb950a9d9ceb99e497f167fa333e8eba968ecc/numba-0.52.0rc3.tar.gz (from https://pypi.org/simple/numba/) (requires-python:>=3.6,<3.9) 2023-09-15T18:07:40,652 Link requires a different Python (3.11.2 not in: '>=3.6,<3.9'): https://files.pythonhosted.org/packages/46/e1/cbbc7c7967d9b10e54c852bf5bece0222a63bfb809d3354014c957ef1bda/numba-0.52.0.tar.gz (from https://pypi.org/simple/numba/) (requires-python:>=3.6,<3.9) 2023-09-15T18:07:40,657 Link requires a different Python (3.11.2 not in: '>=3.6,<3.10'): https://files.pythonhosted.org/packages/c8/e6/681c43623f362d6c504eb29944184c0df6357be10ed2fad6071fd1b7e143/numba-0.53.0rc1.post1.tar.gz (from https://pypi.org/simple/numba/) (requires-python:>=3.6,<3.10) 2023-09-15T18:07:40,662 Link requires a different Python (3.11.2 not in: '>=3.6,<3.10'): https://files.pythonhosted.org/packages/d4/b2/d6e507259f4630b319811b57c2bb3364d2737ae297a972a055cf40df36a5/numba-0.53.0rc2.tar.gz (from https://pypi.org/simple/numba/) (requires-python:>=3.6,<3.10) 2023-09-15T18:07:40,667 Link requires a different Python (3.11.2 not in: '>=3.6,<3.10'): https://files.pythonhosted.org/packages/5e/ef/d761365ea63f28b85574069e953664e9fe218d50b85b3f84849ebecf953c/numba-0.53.0rc3.tar.gz (from https://pypi.org/simple/numba/) (requires-python:>=3.6,<3.10) 2023-09-15T18:07:40,672 Link requires a different Python (3.11.2 not in: '>=3.6,<3.10'): https://files.pythonhosted.org/packages/b0/6d/bb1204879726d6db6dc92de995bdbd64792369f0be3f8a36710cc2d93f78/numba-0.53.0.tar.gz (from https://pypi.org/simple/numba/) (requires-python:>=3.6,<3.10) 2023-09-15T18:07:40,677 Link requires a different Python (3.11.2 not in: '>=3.6,<3.10'): https://files.pythonhosted.org/packages/e3/7d/3d61160836e49f40913741c464f119551c15ed371c1d91ea50308495b93b/numba-0.53.1.tar.gz (from https://pypi.org/simple/numba/) (requires-python:>=3.6,<3.10) 2023-09-15T18:07:40,681 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/f2/76/00e4f3443c093f6064044357b8f07abde5ed7a15d6c43988a68c184b62a5/numba-0.54.0rc2.tar.gz (from https://pypi.org/simple/numba/) (requires-python:>=3.7,<3.10) 2023-09-15T18:07:40,686 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/ec/74/f6ff055664ac01adac37ad8f5ab5c94d75badfd264fdab209e0f5f1fafef/numba-0.54.0rc3.tar.gz (from https://pypi.org/simple/numba/) (requires-python:>=3.7,<3.10) 2023-09-15T18:07:40,691 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/24/66/4720b6f70b42c74f10296a9803f8ba28c284f55cee6839f457bc67588277/numba-0.54.0.tar.gz (from https://pypi.org/simple/numba/) (requires-python:>=3.7,<3.10) 2023-09-15T18:07:40,699 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/d3/93/05c88fc9f17655a93428f49646d1086c8b2b98e8531033f13f3fe464fae5/numba-0.54.1.tar.gz (from https://pypi.org/simple/numba/) (requires-python:>=3.7,<3.10) 2023-09-15T18:07:40,705 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/05/d9/5a3bc6549fe7ea8336f06cd72dac0ad69b18c8089930e560467cf9de359d/numba-0.55.0rc1.tar.gz (from https://pypi.org/simple/numba/) (requires-python:>=3.7,<3.11) 2023-09-15T18:07:40,711 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/cf/e2/8213c08fc9392c99b37de9823119a83576469354154eb08ad653b6ab5213/numba-0.55.0.tar.gz (from https://pypi.org/simple/numba/) (requires-python:>=3.7,<3.11) 2023-09-15T18:07:40,716 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/69/df/bd36068b2c1d0d34794f8ac0c222f9c4ad88dc710b400e65dbb3b59ea57e/numba-0.55.1.tar.gz (from https://pypi.org/simple/numba/) (requires-python:>=3.7,<3.11) 2023-09-15T18:07:40,723 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/39/dd/7109030bb584e8f0c4c8796bfd39fc5811cb77368a8c5db335f99c1fec9e/numba-0.55.2.tar.gz (from https://pypi.org/simple/numba/) (requires-python:>=3.7,<3.11) 2023-09-15T18:07:41,709 Collecting numba>=0.41.0 2023-09-15T18:07:41,786 Using cached numba-0.57.1.tar.gz (2.6 MB) 2023-09-15T18:07:44,298 Preparing metadata (setup.py): started 2023-09-15T18:07:44,299 Running command python setup.py egg_info 2023-09-15T18:07:45,320 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-15T18:07:45,324 !! 2023-09-15T18:07:45,325 ******************************************************************************** 2023-09-15T18:07:45,325 Requirements should be satisfied by a PEP 517 installer. 2023-09-15T18:07:45,326 If you are using pip, you can try `pip install --use-pep517`. 2023-09-15T18:07:45,327 ******************************************************************************** 2023-09-15T18:07:45,329 !! 2023-09-15T18:07:45,331 dist.fetch_build_eggs(dist.setup_requires) 2023-09-15T18:07:51,711 running egg_info 2023-09-15T18:07:51,713 creating /tmp/pip-pip-egg-info-amxec11f/numba.egg-info 2023-09-15T18:07:51,740 writing /tmp/pip-pip-egg-info-amxec11f/numba.egg-info/PKG-INFO 2023-09-15T18:07:51,744 writing dependency_links to /tmp/pip-pip-egg-info-amxec11f/numba.egg-info/dependency_links.txt 2023-09-15T18:07:51,746 writing requirements to /tmp/pip-pip-egg-info-amxec11f/numba.egg-info/requires.txt 2023-09-15T18:07:51,747 writing top-level names to /tmp/pip-pip-egg-info-amxec11f/numba.egg-info/top_level.txt 2023-09-15T18:07:51,749 writing manifest file '/tmp/pip-pip-egg-info-amxec11f/numba.egg-info/SOURCES.txt' 2023-09-15T18:07:51,975 reading manifest file '/tmp/pip-pip-egg-info-amxec11f/numba.egg-info/SOURCES.txt' 2023-09-15T18:07:51,976 reading manifest template 'MANIFEST.in' 2023-09-15T18:07:53,257 warning: no files found matching '*.inc' under directory 'numba' 2023-09-15T18:07:53,303 warning: no files found matching '*.ipynb' under directory 'docs' 2023-09-15T18:07:53,453 warning: no files found matching '*.py' under directory 'examples' 2023-09-15T18:07:53,455 no previously-included directories found matching 'docs/_build' 2023-09-15T18:07:53,456 no previously-included directories found matching 'docs/gh-pages' 2023-09-15T18:07:53,457 adding license file 'LICENSE' 2023-09-15T18:07:53,458 adding license file 'LICENSES.third-party' 2023-09-15T18:07:53,485 writing manifest file '/tmp/pip-pip-egg-info-amxec11f/numba.egg-info/SOURCES.txt' 2023-09-15T18:07:53,607 Preparing metadata (setup.py): finished with status 'done' 2023-09-15T18:07:54,216 Collecting python-levenshtein 2023-09-15T18:07:54,229 Downloading https://www.piwheels.org/simple/python-levenshtein/python_Levenshtein-0.21.1-py3-none-any.whl (9.4 kB) 2023-09-15T18:07:54,451 Collecting parasail!=1.2.1 2023-09-15T18:07:54,465 Downloading https://www.piwheels.org/simple/parasail/parasail-1.3.4-py2.py3-none-linux_armv7l.whl (7.2 MB) 2023-09-15T18:07:58,047 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.2/7.2 MB 2.0 MB/s eta 0:00:00 2023-09-15T18:07:58,350 Collecting squarify 2023-09-15T18:07:58,377 Downloading 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(from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11) 2023-09-15T18:07:58,795 Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/29/d2/151a54944b333e465f98804dced31dab1284f3c37b752b9cefa710b64681/scipy-1.8.0rc2.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11) 2023-09-15T18:07:58,800 Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/e4/26/83dd1c6378513a6241d984bda9f08c512b6e35fff13fba3acc1b3c195f02/scipy-1.8.0rc3.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11) 2023-09-15T18:07:58,806 Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/22/78/056cc43e7737811b6f50886788a940f852773dd9804f5365952805db9648/scipy-1.8.0rc4.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11) 2023-09-15T18:07:58,812 Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/b4/a2/4faa34bf0cdbefd5c706625f1234987795f368eb4e97bde9d6f46860843e/scipy-1.8.0.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11) 2023-09-15T18:07:58,817 Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/26/b5/9330f004b9a3b2b6a31f59f46f1617ce9ca15c0e7fe64288c20385a05c9d/scipy-1.8.1.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11) 2023-09-15T18:07:59,011 Collecting scipy 2023-09-15T18:08:03,492 Using cached https://www.piwheels.org/simple/scipy/scipy-1.11.2-cp311-cp311-linux_armv7l.whl (65.1 MB) 2023-09-15T18:08:07,299 Collecting airr>=1.2 2023-09-15T18:08:07,310 Downloading https://www.piwheels.org/simple/airr/airr-1.5.0-py3-none-any.whl (47 kB) 2023-09-15T18:08:07,327 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 47.3/47.3 kB 4.5 MB/s eta 0:00:00 2023-09-15T18:08:09,602 Collecting tqdm>=4.44.1 2023-09-15T18:08:09,620 Using cached https://www.piwheels.org/simple/tqdm/tqdm-4.66.1-py3-none-any.whl (78 kB) 2023-09-15T18:08:10,104 Collecting scikit-learn 2023-09-15T18:08:10,217 Using cached scikit-learn-1.3.0.tar.gz (7.5 MB) 2023-09-15T18:08:13,850 Installing build dependencies: started 2023-09-15T18:08:13,850 Running command pip subprocess to install build dependencies 2023-09-15T18:08:15,464 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-15T18:08:15,466 Ignoring numpy: markers 'python_version == "3.10" and platform_system == "Windows" and platform_python_implementation != "PyPy"' don't match your environment 2023-09-15T18:08:19,065 Collecting setuptools 2023-09-15T18:08:19,066 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-15T18:08:19,071 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-15T18:08:21,865 Collecting wheel 2023-09-15T18:08:21,883 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-15T18:08:23,262 Collecting Cython>=0.29.33 2023-09-15T18:08:23,263 Obtaining dependency information for Cython>=0.29.33 from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata 2023-09-15T18:08:23,268 Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-15T18:08:24,138 Collecting oldest-supported-numpy 2023-09-15T18:08:24,151 Using cached https://www.piwheels.org/simple/oldest-supported-numpy/oldest_supported_numpy-2023.8.3-py3-none-any.whl (4.8 kB) 2023-09-15T18:08:24,767 Collecting scipy>=1.5.0 2023-09-15T18:08:29,306 Using cached https://www.piwheels.org/simple/scipy/scipy-1.11.2-cp311-cp311-linux_armv7l.whl (65.1 MB) 2023-09-15T18:08:32,370 Collecting numpy==1.23.2 (from oldest-supported-numpy) 2023-09-15T18:08:32,372 Using cached numpy-1.23.2-cp311-cp311-linux_armv7l.whl 2023-09-15T18:08:32,536 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-15T18:08:32,639 Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB) 2023-09-15T18:08:35,294 Installing collected packages: wheel, setuptools, numpy, Cython, scipy, oldest-supported-numpy 2023-09-15T18:09:04,440 Successfully installed Cython-3.0.2 numpy-1.23.2 oldest-supported-numpy-2023.8.3 scipy-1.11.2 setuptools-68.2.2 wheel-0.41.2 2023-09-15T18:09:05,132 Installing build dependencies: finished with status 'done' 2023-09-15T18:09:05,145 Getting requirements to build wheel: started 2023-09-15T18:09:05,146 Running command Getting requirements to build wheel 2023-09-15T18:09:05,812 Partial import of sklearn during the build process. 2023-09-15T18:09:06,077 running egg_info 2023-09-15T18:09:06,083 writing scikit_learn.egg-info/PKG-INFO 2023-09-15T18:09:06,100 writing dependency_links to 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'CONTRIBUTING.md' 2023-09-15T18:15:11,743 warning: no previously-included files found matching 'SECURITY.md' 2023-09-15T18:15:11,745 warning: no previously-included files found matching 'PULL_REQUEST_TEMPLATE.md' 2023-09-15T18:15:11,746 adding license file 'COPYING' 2023-09-15T18:15:11,792 writing manifest file '/tmp/pip-modern-metadata-er7p_zu7/scikit_learn.egg-info/SOURCES.txt' 2023-09-15T18:15:11,795 creating '/tmp/pip-modern-metadata-er7p_zu7/scikit_learn-1.3.0.dist-info' 2023-09-15T18:15:12,095 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-15T18:15:15,789 Collecting pandas>=1.0 2023-09-15T18:15:18,293 Using cached https://www.piwheels.org/simple/pandas/pandas-1.3.4-cp311-cp311-linux_armv7l.whl (35.9 MB) 2023-09-15T18:15:20,092 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) 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https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-15T18:15:24,571 Collecting numpy>=1.17.0 2023-09-15T18:15:29,845 Using cached https://www.piwheels.org/simple/numpy/numpy-1.25.2-cp311-cp311-linux_armv7l.whl (12.5 MB) 2023-09-15T18:15:30,453 Collecting scanpy>=1.6.0 2023-09-15T18:15:30,454 Obtaining dependency information for scanpy>=1.6.0 from https://files.pythonhosted.org/packages/be/c7/414c92e855ac07f6cd3c04e289688c8e2cc420d0fb60446c4af5386aa9c1/scanpy-1.9.5-py3-none-any.whl.metadata 2023-09-15T18:15:30,463 Downloading scanpy-1.9.5-py3-none-any.whl.metadata (5.9 kB) 2023-09-15T18:15:30,554 Collecting adjustText>=0.7 2023-09-15T18:15:30,564 Downloading https://www.piwheels.org/simple/adjusttext/adjustText-0.8-py3-none-any.whl (9.1 kB) 2023-09-15T18:15:31,043 Collecting h5py>=3 (from anndata>=0.7.6) 2023-09-15T18:15:31,044 Using cached h5py-3.9.0-cp311-cp311-linux_armv7l.whl 2023-09-15T18:15:31,612 Collecting natsort (from anndata>=0.7.6) 2023-09-15T18:15:35,219 Downloading https://www.piwheels.org/simple/natsort/natsort-8.4.0-py3-none-any.whl (38 kB) 2023-09-15T18:15:35,450 Collecting packaging>=20 (from anndata>=0.7.6) 2023-09-15T18:15:35,469 Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB) 2023-09-15T18:15:41,940 Collecting igraph==0.10.8 (from python-igraph) 2023-09-15T18:15:41,954 Downloading igraph-0.10.8.tar.gz (4.2 MB) 2023-09-15T18:15:42,353 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.2/4.2 MB 10.8 MB/s eta 0:00:00 2023-09-15T18:15:48,466 Installing build dependencies: started 2023-09-15T18:15:48,466 Running command pip subprocess to install build dependencies 2023-09-15T18:15:50,221 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-15T18:16:01,344 Collecting setuptools 2023-09-15T18:16:01,345 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-15T18:16:01,350 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-15T18:16:08,394 Collecting wheel 2023-09-15T18:16:08,410 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-15T18:16:08,587 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-15T18:16:11,013 Installing collected packages: wheel, setuptools 2023-09-15T18:16:13,458 Successfully installed setuptools-68.2.2 wheel-0.41.2 2023-09-15T18:16:13,967 Installing build dependencies: finished with status 'done' 2023-09-15T18:16:13,971 Getting requirements to build wheel: started 2023-09-15T18:16:13,972 Running command Getting requirements to build wheel 2023-09-15T18:16:14,583 running egg_info 2023-09-15T18:16:14,587 writing src/igraph.egg-info/PKG-INFO 2023-09-15T18:16:14,600 writing dependency_links to src/igraph.egg-info/dependency_links.txt 2023-09-15T18:16:14,608 writing requirements to src/igraph.egg-info/requires.txt 2023-09-15T18:16:14,610 writing top-level names to src/igraph.egg-info/top_level.txt 2023-09-15T18:16:14,641 reading manifest file 'src/igraph.egg-info/SOURCES.txt' 2023-09-15T18:16:15,036 reading manifest template 'MANIFEST.in' 2023-09-15T18:16:15,188 adding license file 'LICENSE' 2023-09-15T18:16:15,306 writing manifest file 'src/igraph.egg-info/SOURCES.txt' 2023-09-15T18:16:15,447 Getting requirements to build wheel: finished with status 'done' 2023-09-15T18:16:15,458 Preparing metadata (pyproject.toml): started 2023-09-15T18:16:15,460 Running command Preparing metadata (pyproject.toml) 2023-09-15T18:16:16,034 running dist_info 2023-09-15T18:16:16,047 creating /tmp/pip-modern-metadata-ph60bbww/igraph.egg-info 2023-09-15T18:16:16,051 writing /tmp/pip-modern-metadata-ph60bbww/igraph.egg-info/PKG-INFO 2023-09-15T18:16:16,064 writing dependency_links to /tmp/pip-modern-metadata-ph60bbww/igraph.egg-info/dependency_links.txt 2023-09-15T18:16:16,072 writing requirements to /tmp/pip-modern-metadata-ph60bbww/igraph.egg-info/requires.txt 2023-09-15T18:16:16,073 writing top-level names to /tmp/pip-modern-metadata-ph60bbww/igraph.egg-info/top_level.txt 2023-09-15T18:16:16,074 writing manifest file '/tmp/pip-modern-metadata-ph60bbww/igraph.egg-info/SOURCES.txt' 2023-09-15T18:16:16,102 reading manifest file '/tmp/pip-modern-metadata-ph60bbww/igraph.egg-info/SOURCES.txt' 2023-09-15T18:16:16,104 reading manifest template 'MANIFEST.in' 2023-09-15T18:16:16,213 adding license file 'LICENSE' 2023-09-15T18:16:16,293 writing manifest file '/tmp/pip-modern-metadata-ph60bbww/igraph.egg-info/SOURCES.txt' 2023-09-15T18:16:16,298 creating '/tmp/pip-modern-metadata-ph60bbww/igraph-0.10.8.dist-info' 2023-09-15T18:16:16,418 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-15T18:16:23,444 Collecting texttable>=1.6.2 (from igraph==0.10.8->python-igraph) 2023-09-15T18:16:23,454 Downloading https://www.piwheels.org/simple/texttable/texttable-1.6.7-py2.py3-none-any.whl (10 kB) 2023-09-15T18:16:23,694 Link requires a different Python (3.11.2 not in: '>=3.6,<3.10'): https://files.pythonhosted.org/packages/19/66/6b2c49c7c68da48d17059882fdb9ad9ac9e5ac3f22b00874d7996e3c44a8/llvmlite-0.36.0.tar.gz (from https://pypi.org/simple/llvmlite/) (requires-python:>=3.6,<3.10) 2023-09-15T18:16:23,699 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/55/21/f7df5d35f3f5d0637d64a89f6b0461f2adf78e22916d6372486f8fc2193d/llvmlite-0.37.0.tar.gz (from https://pypi.org/simple/llvmlite/) (requires-python:>=3.7,<3.10) 2023-09-15T18:16:23,706 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/d8/e3/bd329a96549809598acd5daaccd35fd9d0883185cfe7f681a9e3e54beaa0/llvmlite-0.38.0.tar.gz (from https://pypi.org/simple/llvmlite/) (requires-python:>=3.7,<3.11) 2023-09-15T18:16:23,712 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/90/fc/313c916fb49495ac7c1f9ab213cd3d3285342691b860a2810a51c6c1a10e/llvmlite-0.38.1.tar.gz (from https://pypi.org/simple/llvmlite/) (requires-python:>=3.7,<3.11) 2023-09-15T18:16:28,804 Collecting llvmlite<0.41,>=0.40.0dev0 (from numba>=0.41.0) 2023-09-15T18:16:28,821 Using cached llvmlite-0.40.1.tar.gz (136 kB) 2023-09-15T18:16:28,982 Preparing metadata (setup.py): started 2023-09-15T18:16:28,983 Running command python setup.py egg_info 2023-09-15T18:16:30,004 running egg_info 2023-09-15T18:16:30,006 creating /tmp/pip-pip-egg-info-cwdoxt2d/llvmlite.egg-info 2023-09-15T18:16:30,029 writing /tmp/pip-pip-egg-info-cwdoxt2d/llvmlite.egg-info/PKG-INFO 2023-09-15T18:16:30,033 writing dependency_links to /tmp/pip-pip-egg-info-cwdoxt2d/llvmlite.egg-info/dependency_links.txt 2023-09-15T18:16:30,035 writing top-level names to /tmp/pip-pip-egg-info-cwdoxt2d/llvmlite.egg-info/top_level.txt 2023-09-15T18:16:30,036 writing manifest file '/tmp/pip-pip-egg-info-cwdoxt2d/llvmlite.egg-info/SOURCES.txt' 2023-09-15T18:16:30,092 reading manifest file '/tmp/pip-pip-egg-info-cwdoxt2d/llvmlite.egg-info/SOURCES.txt' 2023-09-15T18:16:30,093 adding license file 'LICENSE' 2023-09-15T18:16:30,096 writing manifest file '/tmp/pip-pip-egg-info-cwdoxt2d/llvmlite.egg-info/SOURCES.txt' 2023-09-15T18:16:30,204 Preparing metadata (setup.py): finished with status 'done' 2023-09-15T18:16:30,248 Collecting numpy>=1.17.0 2023-09-15T18:16:30,249 Using cached numpy-1.24.4-cp311-cp311-linux_armv7l.whl 2023-09-15T18:16:36,933 Collecting Levenshtein==0.21.1 (from python-levenshtein) 2023-09-15T18:16:36,944 Downloading Levenshtein-0.21.1.tar.gz (139 kB) 2023-09-15T18:16:36,968 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 139.2/139.2 kB 8.2 MB/s eta 0:00:00 2023-09-15T18:16:37,139 Installing build dependencies: started 2023-09-15T18:16:37,140 Running command pip subprocess to install build dependencies 2023-09-15T18:16:38,748 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-15T18:16:45,563 Collecting setuptools 2023-09-15T18:16:45,565 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-15T18:16:45,570 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-15T18:16:51,777 Collecting scikit-build>=0.13.0 2023-09-15T18:16:51,799 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/scikit-build/scikit_build-0.17.6-py3-none-any.whl 2023-09-15T18:16:56,164 Using cached https://www.piwheels.org/simple/scikit-build/scikit_build-0.17.6-py3-none-any.whl (84 kB) 2023-09-15T18:16:56,496 Collecting distro (from scikit-build>=0.13.0) 2023-09-15T18:16:56,514 Using cached https://www.piwheels.org/simple/distro/distro-1.8.0-py3-none-any.whl (20 kB) 2023-09-15T18:16:56,674 Collecting packaging (from scikit-build>=0.13.0) 2023-09-15T18:16:56,689 Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB) 2023-09-15T18:16:57,164 Collecting wheel>=0.32.0 (from scikit-build>=0.13.0) 2023-09-15T18:16:57,181 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-15T18:16:57,223 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-15T18:16:59,748 Installing collected packages: wheel, setuptools, packaging, distro, scikit-build 2023-09-15T18:17:02,875 Successfully installed distro-1.8.0 packaging-23.1 scikit-build-0.17.6 setuptools-68.2.2 wheel-0.41.2 2023-09-15T18:17:03,398 Installing build dependencies: finished with status 'done' 2023-09-15T18:17:03,401 Getting requirements to build wheel: started 2023-09-15T18:17:03,402 Running command Getting requirements to build wheel 2023-09-15T18:17:04,297 Using System version of cmake 2023-09-15T18:17:04,297 Using System version of ninja 2023-09-15T18:17:04,298 running egg_info 2023-09-15T18:17:04,303 writing src/Levenshtein.egg-info/PKG-INFO 2023-09-15T18:17:04,307 writing dependency_links to src/Levenshtein.egg-info/dependency_links.txt 2023-09-15T18:17:04,309 writing requirements to src/Levenshtein.egg-info/requires.txt 2023-09-15T18:17:04,311 writing top-level names to src/Levenshtein.egg-info/top_level.txt 2023-09-15T18:17:04,325 reading manifest file 'src/Levenshtein.egg-info/SOURCES.txt' 2023-09-15T18:17:04,343 reading manifest template 'MANIFEST.in' 2023-09-15T18:17:04,361 warning: no files found matching '*.h' under directory 'src/Levenshtein' 2023-09-15T18:17:04,373 warning: no files found matching '*.pxd' under directory 'src/Levenshtein' 2023-09-15T18:17:04,409 adding license file 'COPYING' 2023-09-15T18:17:04,414 writing manifest file 'src/Levenshtein.egg-info/SOURCES.txt' 2023-09-15T18:17:04,522 Getting requirements to build wheel: finished with status 'done' 2023-09-15T18:17:04,535 Preparing metadata (pyproject.toml): started 2023-09-15T18:17:04,536 Running command Preparing metadata (pyproject.toml) 2023-09-15T18:17:05,298 running dist_info 2023-09-15T18:17:05,300 creating /tmp/pip-modern-metadata-0qvoaqkp/Levenshtein.egg-info 2023-09-15T18:17:05,305 writing /tmp/pip-modern-metadata-0qvoaqkp/Levenshtein.egg-info/PKG-INFO 2023-09-15T18:17:05,308 writing dependency_links to /tmp/pip-modern-metadata-0qvoaqkp/Levenshtein.egg-info/dependency_links.txt 2023-09-15T18:17:05,310 writing requirements to /tmp/pip-modern-metadata-0qvoaqkp/Levenshtein.egg-info/requires.txt 2023-09-15T18:17:05,311 writing top-level names to /tmp/pip-modern-metadata-0qvoaqkp/Levenshtein.egg-info/top_level.txt 2023-09-15T18:17:05,312 writing manifest file '/tmp/pip-modern-metadata-0qvoaqkp/Levenshtein.egg-info/SOURCES.txt' 2023-09-15T18:17:05,321 reading manifest file '/tmp/pip-modern-metadata-0qvoaqkp/Levenshtein.egg-info/SOURCES.txt' 2023-09-15T18:17:05,323 reading manifest template 'MANIFEST.in' 2023-09-15T18:17:05,334 warning: no files found matching '*.h' under directory 'src/Levenshtein' 2023-09-15T18:17:05,345 warning: no files found matching '*.pxd' under directory 'src/Levenshtein' 2023-09-15T18:17:05,379 adding license file 'COPYING' 2023-09-15T18:17:05,383 writing manifest file '/tmp/pip-modern-metadata-0qvoaqkp/Levenshtein.egg-info/SOURCES.txt' 2023-09-15T18:17:05,384 creating '/tmp/pip-modern-metadata-0qvoaqkp/Levenshtein-0.21.1.dist-info' 2023-09-15T18:17:05,511 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-15T18:17:13,963 Collecting rapidfuzz<4.0.0,>=2.3.0 (from Levenshtein==0.21.1->python-levenshtein) 2023-09-15T18:17:13,983 Using cached https://www.piwheels.org/simple/rapidfuzz/rapidfuzz-2.11.0-py3-none-any.whl (55 kB) 2023-09-15T18:17:14,427 Collecting pyyaml>=3.12 (from airr>=1.2) 2023-09-15T18:17:14,442 Using cached https://www.piwheels.org/simple/pyyaml/PyYAML-6.0.1-cp311-cp311-linux_armv7l.whl (45 kB) 2023-09-15T18:17:14,582 Collecting yamlordereddictloader>=0.4.0 (from airr>=1.2) 2023-09-15T18:17:14,594 Downloading https://www.piwheels.org/simple/yamlordereddictloader/yamlordereddictloader-0.4.0-py3-none-any.whl (5.1 kB) 2023-09-15T18:17:16,085 Collecting setuptools>=2.0 (from airr>=1.2) 2023-09-15T18:17:16,086 Obtaining dependency information for setuptools>=2.0 from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-15T18:17:16,092 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-15T18:17:21,822 Collecting joblib>=1.1.1 (from scikit-learn) 2023-09-15T18:17:21,852 Using cached https://www.piwheels.org/simple/joblib/joblib-1.3.2-py3-none-any.whl (302 kB) 2023-09-15T18:17:22,010 Collecting threadpoolctl>=2.0.0 (from scikit-learn) 2023-09-15T18:17:22,029 Using cached https://www.piwheels.org/simple/threadpoolctl/threadpoolctl-3.2.0-py3-none-any.whl (15 kB) 2023-09-15T18:17:22,176 Collecting python-dateutil>=2.7.3 (from pandas>=1.0) 2023-09-15T18:17:22,501 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/python-dateutil/python_dateutil-2.8.2-py2.py3-none-any.whl 2023-09-15T18:17:25,211 Using cached https://www.piwheels.org/simple/python-dateutil/python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) 2023-09-15T18:17:25,518 Collecting pytz>=2017.3 (from pandas>=1.0) 2023-09-15T18:17:25,561 Using cached https://www.piwheels.org/simple/pytz/pytz-2023.3.post1-py3-none-any.whl (502 kB) 2023-09-15T18:17:29,297 Collecting matplotlib>=3.4 (from scanpy>=1.6.0) 2023-09-15T18:17:29,308 Downloading matplotlib-3.8.0.tar.gz (35.9 MB) 2023-09-15T18:17:32,207 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 35.9/35.9 MB 6.9 MB/s eta 0:00:00 2023-09-15T18:17:45,924 Installing build dependencies: started 2023-09-15T18:17:45,925 Running command pip subprocess to install build dependencies 2023-09-15T18:17:47,851 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-15T18:17:50,189 Collecting certifi>=2020.06.20 2023-09-15T18:17:50,210 Using cached https://www.piwheels.org/simple/certifi/certifi-2023.7.22-py3-none-any.whl (158 kB) 2023-09-15T18:17:51,288 Collecting numpy>=1.25 2023-09-15T18:17:52,081 Using cached https://www.piwheels.org/simple/numpy/numpy-1.25.2-cp311-cp311-linux_armv7l.whl (12.5 MB) 2023-09-15T18:17:52,594 Collecting pybind11>=2.6 2023-09-15T18:17:52,834 Using cached https://www.piwheels.org/simple/pybind11/pybind11-2.11.1-py3-none-any.whl (227 kB) 2023-09-15T18:17:54,172 Collecting setuptools>=42 2023-09-15T18:17:54,173 Obtaining dependency information for setuptools>=42 from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-15T18:17:54,178 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-15T18:17:54,457 Collecting setuptools_scm>=7 2023-09-15T18:17:54,471 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.1.0-py3-none-any.whl (43 kB) 2023-09-15T18:17:54,802 Collecting packaging>=20.0 (from setuptools_scm>=7) 2023-09-15T18:17:54,821 Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB) 2023-09-15T18:17:54,932 Collecting typing-extensions (from setuptools_scm>=7) 2023-09-15T18:17:54,946 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.7.1-py3-none-any.whl (33 kB) 2023-09-15T18:17:54,979 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-15T18:17:57,480 Installing collected packages: typing-extensions, setuptools, pybind11, packaging, numpy, certifi, setuptools_scm 2023-09-15T18:18:08,881 Successfully installed certifi-2023.7.22 numpy-1.25.2 packaging-23.1 pybind11-2.11.1 setuptools-68.2.2 setuptools_scm-7.1.0 typing-extensions-4.7.1 2023-09-15T18:18:09,476 Installing build dependencies: finished with status 'done' 2023-09-15T18:18:09,478 Getting requirements to build wheel: started 2023-09-15T18:18:09,479 Running command Getting requirements to build wheel 2023-09-15T18:18:10,315 /tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools_scm/git.py:295: UserWarning: git archive did not support describe output 2023-09-15T18:18:10,315 warnings.warn("git archive did not support describe output") 2023-09-15T18:18:10,316 /tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools_scm/git.py:312: UserWarning: unexported git archival found 2023-09-15T18:18:10,317 warnings.warn("unexported git archival found") 2023-09-15T18:18:10,359 Edit mplsetup.cfg to change the build options; suppress output with --quiet. 2023-09-15T18:18:10,360 BUILDING MATPLOTLIB 2023-09-15T18:18:10,361 python: yes [3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0]] 2023-09-15T18:18:10,362 platform: yes [linux] 2023-09-15T18:18:10,362 tests: no [skipping due to configuration] 2023-09-15T18:18:10,363 macosx: no [Mac OS-X only] 2023-09-15T18:18:10,365 running egg_info 2023-09-15T18:18:10,366 writing lib/matplotlib.egg-info/PKG-INFO 2023-09-15T18:18:10,370 writing dependency_links to lib/matplotlib.egg-info/dependency_links.txt 2023-09-15T18:18:10,373 writing requirements to lib/matplotlib.egg-info/requires.txt 2023-09-15T18:18:10,374 writing top-level names to lib/matplotlib.egg-info/top_level.txt 2023-09-15T18:18:10,509 Traceback (most recent call last): 2023-09-15T18:18:10,510 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 23, in 2023-09-15T18:18:10,511 from . import multiarray 2023-09-15T18:18:10,512 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/numpy/core/multiarray.py", line 10, in 2023-09-15T18:18:10,513 from . import overrides 2023-09-15T18:18:10,514 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/numpy/core/overrides.py", line 8, in 2023-09-15T18:18:10,514 from numpy.core._multiarray_umath import ( 2023-09-15T18:18:10,515 ImportError: libopenblas.so.0: cannot open shared object file: No such file or directory 2023-09-15T18:18:10,517 During handling of the above exception, another exception occurred: 2023-09-15T18:18:10,518 Traceback (most recent call last): 2023-09-15T18:18:10,519 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in 2023-09-15T18:18:10,520 main() 2023-09-15T18:18:10,520 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main 2023-09-15T18:18:10,521 json_out['return_val'] = hook(**hook_input['kwargs']) 2023-09-15T18:18:10,522 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-15T18:18:10,523 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 118, in get_requires_for_build_wheel 2023-09-15T18:18:10,524 return hook(config_settings) 2023-09-15T18:18:10,524 ^^^^^^^^^^^^^^^^^^^^^ 2023-09-15T18:18:10,525 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 355, in get_requires_for_build_wheel 2023-09-15T18:18:10,526 return self._get_build_requires(config_settings, requirements=['wheel']) 2023-09-15T18:18:10,527 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-15T18:18:10,528 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 325, in _get_build_requires 2023-09-15T18:18:10,529 self.run_setup() 2023-09-15T18:18:10,530 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 341, in run_setup 2023-09-15T18:18:10,531 exec(code, locals()) 2023-09-15T18:18:10,532 File "", line 279, in 2023-09-15T18:18:10,533 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools/__init__.py", line 103, in setup 2023-09-15T18:18:10,534 return distutils.core.setup(**attrs) 2023-09-15T18:18:10,535 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-15T18:18:10,536 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 185, in setup 2023-09-15T18:18:10,538 return run_commands(dist) 2023-09-15T18:18:10,539 ^^^^^^^^^^^^^^^^^^ 2023-09-15T18:18:10,540 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 201, in run_commands 2023-09-15T18:18:10,541 dist.run_commands() 2023-09-15T18:18:10,542 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 969, in run_commands 2023-09-15T18:18:10,543 self.run_command(cmd) 2023-09-15T18:18:10,544 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py", line 989, in run_command 2023-09-15T18:18:10,545 super().run_command(command) 2023-09-15T18:18:10,546 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command 2023-09-15T18:18:10,547 cmd_obj.run() 2023-09-15T18:18:10,548 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools/command/egg_info.py", line 318, in run 2023-09-15T18:18:10,549 self.find_sources() 2023-09-15T18:18:10,551 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools/command/egg_info.py", line 326, in find_sources 2023-09-15T18:18:10,552 mm.run() 2023-09-15T18:18:10,553 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools/command/egg_info.py", line 548, in run 2023-09-15T18:18:10,554 self.add_defaults() 2023-09-15T18:18:10,555 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools/command/egg_info.py", line 586, in add_defaults 2023-09-15T18:18:10,556 sdist.add_defaults(self) 2023-09-15T18:18:10,557 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools/command/sdist.py", line 113, in add_defaults 2023-09-15T18:18:10,558 super().add_defaults() 2023-09-15T18:18:10,560 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/command/sdist.py", line 251, in add_defaults 2023-09-15T18:18:10,561 self._add_defaults_ext() 2023-09-15T18:18:10,562 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/command/sdist.py", line 335, in _add_defaults_ext 2023-09-15T18:18:10,563 build_ext = self.get_finalized_command('build_ext') 2023-09-15T18:18:10,564 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-15T18:18:10,565 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 305, in get_finalized_command 2023-09-15T18:18:10,566 cmd_obj.ensure_finalized() 2023-09-15T18:18:10,567 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 111, in ensure_finalized 2023-09-15T18:18:10,568 self.finalize_options() 2023-09-15T18:18:10,570 File "", line 80, in finalize_options 2023-09-15T18:18:10,571 File "", line 80, in 2023-09-15T18:18:10,572 File "/tmp/pip-install-k1vk2yxr/matplotlib_48feadecea744d719eaedc23965fc62f/setupext.py", line 403, in get_extensions 2023-09-15T18:18:10,573 add_numpy_flags(ext) 2023-09-15T18:18:10,574 File "/tmp/pip-install-k1vk2yxr/matplotlib_48feadecea744d719eaedc23965fc62f/setupext.py", line 511, in add_numpy_flags 2023-09-15T18:18:10,575 import numpy as np 2023-09-15T18:18:10,576 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/numpy/__init__.py", line 139, in 2023-09-15T18:18:10,577 from . import core 2023-09-15T18:18:10,578 File "/tmp/pip-build-env-vsjhozi2/overlay/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 49, in 2023-09-15T18:18:10,579 raise ImportError(msg) 2023-09-15T18:18:10,580 ImportError: 2023-09-15T18:18:10,582 IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 2023-09-15T18:18:10,584 Importing the numpy C-extensions failed. This error can happen for 2023-09-15T18:18:10,585 many reasons, often due to issues with your setup or how NumPy was 2023-09-15T18:18:10,586 installed. 2023-09-15T18:18:10,587 We have compiled some common reasons and troubleshooting tips at: 2023-09-15T18:18:10,589 https://numpy.org/devdocs/user/troubleshooting-importerror.html 2023-09-15T18:18:10,592 Please note and check the following: 2023-09-15T18:18:10,594 * The Python version is: Python3.11 from "/usr/bin/python3" 2023-09-15T18:18:10,595 * The NumPy version is: "1.25.2" 2023-09-15T18:18:10,597 and make sure that they are the versions you expect. 2023-09-15T18:18:10,599 Please carefully study the documentation linked above for further help. 2023-09-15T18:18:10,601 Original error was: libopenblas.so.0: cannot open shared object file: No such file or directory 2023-09-15T18:18:10,653 error: subprocess-exited-with-error 2023-09-15T18:18:10,654 × Getting requirements to build wheel did not run successfully. 2023-09-15T18:18:10,655 │ exit code: 1 2023-09-15T18:18:10,655 ╰─> See above for output. 2023-09-15T18:18:10,656 note: This error originates from a subprocess, and is likely not a problem with pip. 2023-09-15T18:18:10,657 full command: /usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py get_requires_for_build_wheel /tmp/tmpbvaqihtu 2023-09-15T18:18:10,657 cwd: /tmp/pip-install-k1vk2yxr/matplotlib_48feadecea744d719eaedc23965fc62f 2023-09-15T18:18:10,658 Getting requirements to build wheel: finished with status 'error' 2023-09-15T18:18:10,662 error: subprocess-exited-with-error 2023-09-15T18:18:10,663 × Getting requirements to build wheel did not run successfully. 2023-09-15T18:18:10,664 │ exit code: 1 2023-09-15T18:18:10,664 ╰─> See above for output. 2023-09-15T18:18:10,665 note: This error originates from a subprocess, and is likely not a problem with pip. 2023-09-15T18:18:17,485 ERROR: [present-rich] pip subprocess to install backend dependencies exited with 1 2023-09-15T18:18:17,498 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/__pip-runner__.py install --ignore-installed --no-user --prefix /tmp/pip-build-env-rtgxobcb/normal --no-warn-script-location -v --no-binary scirpy --only-binary :none: -i https://pypi.org/simple --extra-index-url https://www.piwheels.org/simple --prefer-binary -- 'networkx>=2.5' 'anndata>=0.7.6' python-igraph 'numba>=0.41.0' python-levenshtein 'parasail != 1.2.1' squarify scipy 'airr>=1.2' 'tqdm>=4.44.1' scikit-learn 'pandas>=1.0' 'numpy>=1.17.0' 'scanpy>=1.6.0' 'adjustText>=0.7'[/] 2023-09-15T18:18:17,499 [bold magenta]cwd[/]: \[inherit] 2023-09-15T18:18:17,499 Installing backend dependencies: finished with status 'error' 2023-09-15T18:18:17,501 ERROR: [present-rich] pip subprocess to install backend dependencies exited with 1 2023-09-15T18:18:17,506 Exception information: 2023-09-15T18:18:17,506 Traceback (most recent call last): 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-15T18:18:17,506 status = run_func(*args) 2023-09-15T18:18:17,506 ^^^^^^^^^^^^^^^ 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-15T18:18:17,506 return func(self, options, args) 2023-09-15T18:18:17,506 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2023-09-15T18:18:17,506 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-09-15T18:18:17,506 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2023-09-15T18:18:17,506 result = self._result = resolver.resolve( 2023-09-15T18:18:17,506 ^^^^^^^^^^^^^^^^^ 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2023-09-15T18:18:17,506 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-09-15T18:18:17,506 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2023-09-15T18:18:17,506 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2023-09-15T18:18:17,506 if not criterion.candidates: 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2023-09-15T18:18:17,506 return bool(self._sequence) 2023-09-15T18:18:17,506 ^^^^^^^^^^^^^^^^^^^^ 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-09-15T18:18:17,506 return any(self) 2023-09-15T18:18:17,506 ^^^^^^^^^ 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-09-15T18:18:17,506 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-09-15T18:18:17,506 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-09-15T18:18:17,506 candidate = func() 2023-09-15T18:18:17,506 ^^^^^^ 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2023-09-15T18:18:17,506 self._link_candidate_cache[link] = LinkCandidate( 2023-09-15T18:18:17,506 ^^^^^^^^^^^^^^ 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__ 2023-09-15T18:18:17,506 super().__init__( 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__ 2023-09-15T18:18:17,506 self.dist = self._prepare() 2023-09-15T18:18:17,506 ^^^^^^^^^^^^^^^ 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare 2023-09-15T18:18:17,506 dist = self._prepare_distribution() 2023-09-15T18:18:17,506 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution 2023-09-15T18:18:17,506 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-09-15T18:18:17,506 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement 2023-09-15T18:18:17,506 return self._prepare_linked_requirement(req, parallel_builds) 2023-09-15T18:18:17,506 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement 2023-09-15T18:18:17,506 dist = _get_prepared_distribution( 2023-09-15T18:18:17,506 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2023-09-15T18:18:17,506 abstract_dist.prepare_distribution_metadata( 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 48, in prepare_distribution_metadata 2023-09-15T18:18:17,506 self._install_build_reqs(finder) 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 122, in _install_build_reqs 2023-09-15T18:18:17,506 self.req.build_env.install_requirements( 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/build_env.py", line 217, in install_requirements 2023-09-15T18:18:17,506 self._install_requirements( 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/build_env.py", line 275, in _install_requirements 2023-09-15T18:18:17,506 call_subprocess( 2023-09-15T18:18:17,506 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-09-15T18:18:17,506 raise error 2023-09-15T18:18:17,506 pip._internal.exceptions.InstallationSubprocessError: pip subprocess to install backend dependencies exited with 1 2023-09-15T18:18:17,518 Removed scirpy==0.10.1 from https://files.pythonhosted.org/packages/12/9b/171147b32e198a14c5842216ed08b8eaea20472057366abab2cfe83c3ff1/scirpy-0.10.1.tar.gz from build tracker '/tmp/pip-build-tracker-u4ow627h' 2023-09-15T18:18:17,519 Removed build tracker: '/tmp/pip-build-tracker-u4ow627h'