2023-09-15T18:27:01,705 Created temporary directory: /tmp/pip-build-tracker-x8c40kgy 2023-09-15T18:27:01,707 Initialized build tracking at /tmp/pip-build-tracker-x8c40kgy 2023-09-15T18:27:01,707 Created build tracker: /tmp/pip-build-tracker-x8c40kgy 2023-09-15T18:27:01,707 Entered build tracker: /tmp/pip-build-tracker-x8c40kgy 2023-09-15T18:27:01,708 Created temporary directory: /tmp/pip-wheel-8p8jfet1 2023-09-15T18:27:01,711 Created temporary directory: /tmp/pip-ephem-wheel-cache-_ydai0ch 2023-09-15T18:27:01,732 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-15T18:27:01,736 2 location(s) to search for versions of gimmemotifs: 2023-09-15T18:27:01,736 * https://pypi.org/simple/gimmemotifs/ 2023-09-15T18:27:01,736 * https://www.piwheels.org/simple/gimmemotifs/ 2023-09-15T18:27:01,737 Fetching project page and analyzing links: https://pypi.org/simple/gimmemotifs/ 2023-09-15T18:27:01,738 Getting page https://pypi.org/simple/gimmemotifs/ 2023-09-15T18:27:01,739 Found index url https://pypi.org/simple/ 2023-09-15T18:27:01,964 Fetched page https://pypi.org/simple/gimmemotifs/ as application/vnd.pypi.simple.v1+json 2023-09-15T18:27:01,970 Found link https://files.pythonhosted.org/packages/3b/66/216440ec9d7e3c075bd26b6ab13132bcebb42fc2dd20a8886a6bec347976/gimmemotifs-0.8.9.1.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.8.9.1 2023-09-15T18:27:01,971 Found link https://files.pythonhosted.org/packages/9a/64/35a8f9fdbf3d212a5a4a797bf862df63a3b53e1858b1d18480a4f7cfe1e6/gimmemotifs-0.9.0.2.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.9.0.2 2023-09-15T18:27:01,971 Found link https://files.pythonhosted.org/packages/65/94/7402fe33e86c472e392ac203838c4e6d2c07a3dc421998d5e1c38dbcdcac/gimmemotifs-0.9.0.3.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.9.0.3 2023-09-15T18:27:01,972 Found link https://files.pythonhosted.org/packages/99/73/fc665e610b200b170a2701ecb2d298b8f51c9792e44e12b47a803ed1cf9e/gimmemotifs-0.10.0b1.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.10.0b1 2023-09-15T18:27:01,972 Found link https://files.pythonhosted.org/packages/e5/3a/cd3a48bbd49c2cdf325616da57ebe50b12135a4f60111cc4960573f29524/gimmemotifs-0.10.0b2.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.10.0b2 2023-09-15T18:27:01,973 Found link https://files.pythonhosted.org/packages/98/be/6fdb2557d262d2dfd365fa8502205c6a1f72cfa8029d0d9c3fdb9420f3ff/gimmemotifs-0.10.0b4.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.10.0b4 2023-09-15T18:27:01,974 Found link https://files.pythonhosted.org/packages/d3/83/2ffdbeb78227407f2ac3f4390f27257630709a3653a2c42926b181381f75/gimmemotifs-0.10.0b5.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.10.0b5 2023-09-15T18:27:01,975 Found link https://files.pythonhosted.org/packages/90/2c/f9493aeaaf1cf10742d7a7bf251dfbfe4a82d53f5222379b0466ac8cacfe/gimmemotifs-0.10.0b6.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.10.0b6 2023-09-15T18:27:01,975 Found link https://files.pythonhosted.org/packages/82/a3/34326512c0e9418729124bf9f5fd5da54a9792d5e99e84fe0653f3c38d2e/gimmemotifs-0.11.0b0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.11.0b0 2023-09-15T18:27:01,976 Found link https://files.pythonhosted.org/packages/6c/b7/f04441424da981f03b69c21f2aa534aa4c6cee7aaea4a5e6b1887116bb08/gimmemotifs-0.11.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.11.0 2023-09-15T18:27:01,976 Found link https://files.pythonhosted.org/packages/e9/c6/6b7e7069dbadc7d14ddab5483ef1c98e7532a3a92d66d89ef5cb59d0ac7a/gimmemotifs-0.11.1.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.11.1 2023-09-15T18:27:01,977 Found link https://files.pythonhosted.org/packages/53/5b/9251735efaf7a76ed7694c03a7a47cc21290f71d3958581a425da4682c47/gimmemotifs-0.12.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.12.0 2023-09-15T18:27:01,978 Found link https://files.pythonhosted.org/packages/66/76/ec3ff69655c4bbb8b606db6f45608125fe91e8568dd5858187f8b1b9379c/gimmemotifs-0.13.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.13.0 2023-09-15T18:27:01,978 Found link https://files.pythonhosted.org/packages/80/e9/84e4a077680c2c6e2baaca829ac660e910014c0aa57cd5dc915564a5a001/gimmemotifs-0.13.1.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.13.1 2023-09-15T18:27:01,979 Found link https://files.pythonhosted.org/packages/24/d1/8505a7798bf8e06f4a0b7a54b51bbcd9c9e5361d0dd1f3a89e78f2784c65/gimmemotifs-0.14.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.14.0 2023-09-15T18:27:01,980 Found link https://files.pythonhosted.org/packages/ef/4c/1a19f42d88f7fb47a1589a0c535a9dff9d75d1317a8a1a099ef0195348f9/gimmemotifs-0.14.2.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.14.2 2023-09-15T18:27:01,980 Found link https://files.pythonhosted.org/packages/1a/7d/113454d4ef0e960500067e0e4a0d0ed105318749c2e18f5be6542f22df48/gimmemotifs-0.14.3.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.14.3 2023-09-15T18:27:01,981 Found link https://files.pythonhosted.org/packages/f6/71/681a72802e005601ad8da3b695ada4eea8e56e8bd1f14d42d4d7248a24a4/gimmemotifs-0.14.4.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.14.4 2023-09-15T18:27:01,981 Found link https://files.pythonhosted.org/packages/5f/d9/43302fdb777ca8bad9739d81804644090b25011be4a0d2f99188a8849b40/gimmemotifs-0.15.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.15.0 2023-09-15T18:27:01,982 Found link https://files.pythonhosted.org/packages/de/a5/9a3804dda5730092769519f38a7bc736488cff60cf7c8f0f2f71eeeca3e4/gimmemotifs-0.15.2.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.15.2 2023-09-15T18:27:01,983 Found link https://files.pythonhosted.org/packages/0c/bd/11e957138342aef4b2539818d1c548fce634e7b323961cdd9beedba3879c/gimmemotifs-0.15.3.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.15.3 2023-09-15T18:27:01,983 Found link https://files.pythonhosted.org/packages/2b/71/faeeb7d734b4163500ad2e62fc131e66f912a722b7b9f6ad902f3ed62923/gimmemotifs-0.16.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.16.0 2023-09-15T18:27:01,984 Found link https://files.pythonhosted.org/packages/90/56/831b7548562dce57014d87dc9731c4b5ec0747c74ce2dd30966e2e812c5e/gimmemotifs-0.17.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.17.0 2023-09-15T18:27:01,984 Found link https://files.pythonhosted.org/packages/c5/c3/2dbd6363f025cf4b06d938479a9b35dab0ca91e59259b16e0bd6eef8bea0/gimmemotifs-0.17.2.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.17.2 2023-09-15T18:27:01,985 Found link https://files.pythonhosted.org/packages/23/b1/31f5061ff2749292af7c70ec4f1c81afd1991ea4a2cb62c4e5235d3f1f1c/gimmemotifs-0.18.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.18.0 2023-09-15T18:27:01,986 Fetching project page and analyzing links: https://www.piwheels.org/simple/gimmemotifs/ 2023-09-15T18:27:01,986 Getting page https://www.piwheels.org/simple/gimmemotifs/ 2023-09-15T18:27:01,987 Found index url https://www.piwheels.org/simple/ 2023-09-15T18:27:09,716 Fetched page https://www.piwheels.org/simple/gimmemotifs/ as text/html 2023-09-15T18:27:09,763 Skipping link: No binaries permitted for gimmemotifs: https://www.piwheels.org/simple/gimmemotifs/gimmemotifs-0.18.0-cp39-cp39-linux_armv7l.whl#sha256=c12d64728ba85967129e8944ea53e685487283a4aa9d86599b1d0b154bfafd50 (from https://www.piwheels.org/simple/gimmemotifs/) 2023-09-15T18:27:09,764 Skipping link: No binaries permitted for gimmemotifs: https://www.piwheels.org/simple/gimmemotifs/gimmemotifs-0.18.0-cp39-cp39-linux_armv6l.whl#sha256=c12d64728ba85967129e8944ea53e685487283a4aa9d86599b1d0b154bfafd50 (from https://www.piwheels.org/simple/gimmemotifs/) 2023-09-15T18:27:09,765 Skipping link: No binaries permitted for gimmemotifs: https://www.piwheels.org/simple/gimmemotifs/gimmemotifs-0.18.0-cp37-cp37m-linux_armv7l.whl#sha256=35903bb52ba9b0b924163a78f5da57547ab61e653ae348938391849b6995de96 (from https://www.piwheels.org/simple/gimmemotifs/) 2023-09-15T18:27:09,766 Skipping link: No binaries permitted for gimmemotifs: 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https://www.piwheels.org/simple/gimmemotifs/gimmemotifs-0.16.0-cp311-cp311-linux_armv7l.whl#sha256=d8ad0b8ec9c3270ba9062fa3f50c42ad755bf3c79d0a14357139ce7389165aee (from https://www.piwheels.org/simple/gimmemotifs/) 2023-09-15T18:27:09,773 Skipping link: No binaries permitted for gimmemotifs: https://www.piwheels.org/simple/gimmemotifs/gimmemotifs-0.16.0-cp311-cp311-linux_armv6l.whl#sha256=d8ad0b8ec9c3270ba9062fa3f50c42ad755bf3c79d0a14357139ce7389165aee (from https://www.piwheels.org/simple/gimmemotifs/) 2023-09-15T18:27:09,774 Skipping link: No binaries permitted for gimmemotifs: https://www.piwheels.org/simple/gimmemotifs/gimmemotifs-0.16.0-cp39-cp39-linux_armv7l.whl#sha256=3bbdd661a2a2499f4b6dae989a20ea228510bc8e1774f5e82c956f1d8bfd10af (from https://www.piwheels.org/simple/gimmemotifs/) 2023-09-15T18:27:09,774 Skipping link: No binaries permitted for gimmemotifs: 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https://www.piwheels.org/simple/gimmemotifs/gimmemotifs-0.13.0-cp39-cp39-linux_armv7l.whl#sha256=4578af2cf7e0c8796980b9f5c87309d3bf6f25a3394eb569d4db3f99819fae86 (from https://www.piwheels.org/simple/gimmemotifs/) 2023-09-15T18:27:09,834 Skipping link: No binaries permitted for gimmemotifs: https://www.piwheels.org/simple/gimmemotifs/gimmemotifs-0.13.0-cp39-cp39-linux_armv6l.whl#sha256=4578af2cf7e0c8796980b9f5c87309d3bf6f25a3394eb569d4db3f99819fae86 (from https://www.piwheels.org/simple/gimmemotifs/) 2023-09-15T18:27:09,835 Skipping link: No binaries permitted for gimmemotifs: https://www.piwheels.org/simple/gimmemotifs/gimmemotifs-0.13.0-cp37-cp37m-linux_armv6l.whl#sha256=4fcf7c241d0be7c3cf6cbf538d027f79dff8c0e74de8dc43c9f2731b04cd5a6a (from https://www.piwheels.org/simple/gimmemotifs/) 2023-09-15T18:27:09,836 Skipping link: No binaries permitted for gimmemotifs: https://www.piwheels.org/simple/gimmemotifs/gimmemotifs-0.13.0-cp37-cp37m-linux_armv7l.whl#sha256=4fcf7c241d0be7c3cf6cbf538d027f79dff8c0e74de8dc43c9f2731b04cd5a6a (from https://www.piwheels.org/simple/gimmemotifs/) 2023-09-15T18:27:09,837 Skipping link: No binaries permitted for gimmemotifs: https://www.piwheels.org/simple/gimmemotifs/gimmemotifs-0.13.0-cp35-cp35m-linux_armv6l.whl#sha256=0c4940ef4ea69129a58fbbfdf350ea637b435f2f36e04ddfbc81dd3ac0057a01 (from https://www.piwheels.org/simple/gimmemotifs/) 2023-09-15T18:27:09,837 Skipping link: No binaries permitted for gimmemotifs: https://www.piwheels.org/simple/gimmemotifs/gimmemotifs-0.13.0-cp35-cp35m-linux_armv7l.whl#sha256=0c4940ef4ea69129a58fbbfdf350ea637b435f2f36e04ddfbc81dd3ac0057a01 (from https://www.piwheels.org/simple/gimmemotifs/) 2023-09-15T18:27:09,839 Skipping link: not a file: https://www.piwheels.org/simple/gimmemotifs/ 2023-09-15T18:27:09,839 Skipping link: not a file: https://pypi.org/simple/gimmemotifs/ 2023-09-15T18:27:09,869 Given no hashes to check 1 links for project 'gimmemotifs': discarding no candidates 2023-09-15T18:27:09,888 Collecting gimmemotifs==0.17.0 2023-09-15T18:27:09,890 Created temporary directory: /tmp/pip-unpack-gasawsns 2023-09-15T18:27:10,116 Downloading gimmemotifs-0.17.0.tar.gz (34.5 MB) 2023-09-15T18:27:19,748 Added gimmemotifs==0.17.0 from https://files.pythonhosted.org/packages/90/56/831b7548562dce57014d87dc9731c4b5ec0747c74ce2dd30966e2e812c5e/gimmemotifs-0.17.0.tar.gz to build tracker '/tmp/pip-build-tracker-x8c40kgy' 2023-09-15T18:27:19,750 Running setup.py (path:/tmp/pip-wheel-8p8jfet1/gimmemotifs_b7bb6e56e52a4f1bbe35b41cb834b058/setup.py) egg_info for package gimmemotifs 2023-09-15T18:27:19,750 Created temporary directory: /tmp/pip-pip-egg-info-662ygrbv 2023-09-15T18:27:19,751 Preparing metadata (setup.py): started 2023-09-15T18:27:19,752 Running command python setup.py egg_info 2023-09-15T18:27:20,873 running egg_info 2023-09-15T18:27:20,874 creating /tmp/pip-pip-egg-info-662ygrbv/gimmemotifs.egg-info 2023-09-15T18:27:20,898 writing /tmp/pip-pip-egg-info-662ygrbv/gimmemotifs.egg-info/PKG-INFO 2023-09-15T18:27:20,902 writing dependency_links to /tmp/pip-pip-egg-info-662ygrbv/gimmemotifs.egg-info/dependency_links.txt 2023-09-15T18:27:20,903 writing requirements to /tmp/pip-pip-egg-info-662ygrbv/gimmemotifs.egg-info/requires.txt 2023-09-15T18:27:20,905 writing top-level names to /tmp/pip-pip-egg-info-662ygrbv/gimmemotifs.egg-info/top_level.txt 2023-09-15T18:27:20,906 writing manifest file '/tmp/pip-pip-egg-info-662ygrbv/gimmemotifs.egg-info/SOURCES.txt' 2023-09-15T18:27:21,009 reading manifest file '/tmp/pip-pip-egg-info-662ygrbv/gimmemotifs.egg-info/SOURCES.txt' 2023-09-15T18:27:21,011 reading manifest template 'MANIFEST.in' 2023-09-15T18:27:21,012 warning: no files found matching 'run_tests.py' 2023-09-15T18:27:21,082 adding license file 'COPYING' 2023-09-15T18:27:21,093 writing manifest file '/tmp/pip-pip-egg-info-662ygrbv/gimmemotifs.egg-info/SOURCES.txt' 2023-09-15T18:27:21,203 Preparing metadata (setup.py): finished with status 'done' 2023-09-15T18:27:21,208 Source in /tmp/pip-wheel-8p8jfet1/gimmemotifs_b7bb6e56e52a4f1bbe35b41cb834b058 has version 0.17.0, which satisfies requirement gimmemotifs==0.17.0 from https://files.pythonhosted.org/packages/90/56/831b7548562dce57014d87dc9731c4b5ec0747c74ce2dd30966e2e812c5e/gimmemotifs-0.17.0.tar.gz 2023-09-15T18:27:21,209 Removed gimmemotifs==0.17.0 from https://files.pythonhosted.org/packages/90/56/831b7548562dce57014d87dc9731c4b5ec0747c74ce2dd30966e2e812c5e/gimmemotifs-0.17.0.tar.gz from build tracker '/tmp/pip-build-tracker-x8c40kgy' 2023-09-15T18:27:21,214 Created temporary directory: /tmp/pip-unpack-h913cm5j 2023-09-15T18:27:21,215 Created temporary directory: /tmp/pip-unpack-m3fbmfm3 2023-09-15T18:27:21,242 Building wheels for collected packages: gimmemotifs 2023-09-15T18:27:21,246 Created temporary directory: /tmp/pip-wheel-3u8pssp5 2023-09-15T18:27:21,247 Building wheel for gimmemotifs (setup.py): started 2023-09-15T18:27:21,248 Destination directory: /tmp/pip-wheel-3u8pssp5 2023-09-15T18:27:21,249 Running command python setup.py bdist_wheel 2023-09-15T18:27:22,309 running bdist_wheel 2023-09-15T18:27:22,404 running build 2023-09-15T18:27:22,404 running build_py 2023-09-15T18:27:22,405 creating build 2023-09-15T18:27:22,406 creating build/src 2023-09-15T18:27:22,407 creating build/src/HMS 2023-09-15T18:27:22,408 copying src/HMS/theta2.txt -> build/src/HMS 2023-09-15T18:27:22,410 copying src/HMS/theta3.txt -> build/src/HMS 2023-09-15T18:27:22,412 copying src/HMS/theta1.txt -> build/src/HMS 2023-09-15T18:27:22,414 copying src/HMS/hms -> build/src/HMS 2023-09-15T18:27:22,417 copying src/HMS/theta0.txt -> build/src/HMS 2023-09-15T18:27:22,419 creating build/src/MotifSampler 2023-09-15T18:27:22,420 copying src/MotifSampler/CreateBackgroundModel_i386 -> build/src/MotifSampler 2023-09-15T18:27:22,439 copying src/MotifSampler/CreateBackgroundModel_x86_64 -> build/src/MotifSampler 2023-09-15T18:27:22,463 copying src/MotifSampler/MotifSampler_i386 -> build/src/MotifSampler 2023-09-15T18:27:22,486 copying src/MotifSampler/MotifSampler_x86_64 -> build/src/MotifSampler 2023-09-15T18:27:22,511 creating build/src/MDmodule 2023-09-15T18:27:22,512 copying src/MDmodule/MDmodule -> build/src/MDmodule 2023-09-15T18:27:22,515 copying src/MDmodule/MDmodule.c -> build/src/MDmodule 2023-09-15T18:27:22,518 copying src/MDmodule/COPYING -> build/src/MDmodule 2023-09-15T18:27:22,520 creating build/src/AMD 2023-09-15T18:27:22,521 copying src/AMD/AMD.bin -> build/src/AMD 2023-09-15T18:27:22,525 creating build/src/posmo 2023-09-15T18:27:22,526 copying src/posmo/clusterwd -> build/src/posmo 2023-09-15T18:27:22,529 copying src/posmo/posmo -> build/src/posmo 2023-09-15T18:27:22,532 copying src/COPYING -> build/src 2023-09-15T18:27:22,534 creating build/src/Improbizer 2023-09-15T18:27:22,535 copying src/Improbizer/ameme_i386 -> build/src/Improbizer 2023-09-15T18:27:22,545 copying src/Improbizer/ameme_x86_64 -> build/src/Improbizer 2023-09-15T18:27:22,564 creating build/src/BioProspector 2023-09-15T18:27:22,565 copying src/BioProspector/COPYING -> build/src/BioProspector 2023-09-15T18:27:22,566 copying src/BioProspector/BioProspector.c -> build/src/BioProspector 2023-09-15T18:27:22,572 copying src/BioProspector/BioProspector -> build/src/BioProspector 2023-09-15T18:27:22,576 creating build/src/ChIPMunk 2023-09-15T18:27:22,577 copying src/ChIPMunk/chipmunk.jar -> build/src/ChIPMunk 2023-09-15T18:27:22,648 copying src/ChIPMunk/ChIPMunk.sh -> build/src/ChIPMunk 2023-09-15T18:27:22,650 copying src/README -> build/src 2023-09-15T18:27:22,652 creating build/lib.linux-armv7l-cpython-311 2023-09-15T18:27:22,652 creating build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:22,653 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-15T18:27:23,442 compiling BioProspector... ok 2023-09-15T18:27:24,224 compiling MDmodule... ok 2023-09-15T18:27:24,225 copying src/MDmodule/MDmodule -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-15T18:27:24,228 copying build/src/MDmodule/MDmodule -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-15T18:27:24,231 copying src/BioProspector/BioProspector -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-15T18:27:24,234 copying build/src/BioProspector/BioProspector -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-15T18:27:24,238 copying src/posmo/posmo -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-15T18:27:24,241 copying src/posmo/clusterwd -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-15T18:27:24,244 copying src/AMD/AMD.bin -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-15T18:27:24,248 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ChIPMunk 2023-09-15T18:27:24,249 copying build/src/ChIPMunk/chipmunk.jar -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ChIPMunk 2023-09-15T18:27:24,338 copying build/src/ChIPMunk/ChIPMunk.sh -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ChIPMunk 2023-09-15T18:27:24,340 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS 2023-09-15T18:27:24,341 copying build/src/HMS/theta2.txt -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS 2023-09-15T18:27:24,343 copying build/src/HMS/theta3.txt -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS 2023-09-15T18:27:24,345 copying build/src/HMS/theta1.txt -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS 2023-09-15T18:27:24,346 copying build/src/HMS/hms -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS 2023-09-15T18:27:24,350 copying build/src/HMS/theta0.txt -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS 2023-09-15T18:27:24,367 copying build/src/MotifSampler/MotifSampler_x86_64 -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/MotifSampler 2023-09-15T18:27:24,392 copying build/src/MotifSampler/CreateBackgroundModel_x86_64 -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/CreateBackgroundModel 2023-09-15T18:27:24,415 copying build/src/Improbizer/ameme_x86_64 -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ameme 2023-09-15T18:27:24,427 creating build/lib.linux-armv7l-cpython-311/data 2023-09-15T18:27:24,428 copying data/__init__.py -> build/lib.linux-armv7l-cpython-311/data 2023-09-15T18:27:24,431 copying gimmemotifs/config.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,433 copying gimmemotifs/_version.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,435 copying gimmemotifs/plot.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,437 copying gimmemotifs/denovo.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,440 copying gimmemotifs/cluster.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,442 copying gimmemotifs/prediction.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,445 copying gimmemotifs/orthologs.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,448 copying gimmemotifs/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,449 copying gimmemotifs/shutils.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,452 copying gimmemotifs/preprocessing.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,454 copying gimmemotifs/scanner.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,457 copying gimmemotifs/moap.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,460 copying gimmemotifs/validation.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,462 copying gimmemotifs/comparison.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,465 copying gimmemotifs/utils.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,468 copying gimmemotifs/maelstrom.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,471 copying gimmemotifs/fasta.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,473 copying gimmemotifs/stats.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,475 copying gimmemotifs/rank.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,477 copying gimmemotifs/cli.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,480 copying gimmemotifs/report.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,483 copying gimmemotifs/background.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,486 copying gimmemotifs/rocmetrics.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,488 copying gimmemotifs/utils.fix.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:24,492 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-15T18:27:24,493 copying gimmemotifs/commands/cluster.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-15T18:27:24,495 copying gimmemotifs/commands/prediction.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-15T18:27:24,497 copying gimmemotifs/commands/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-15T18:27:24,498 copying gimmemotifs/commands/location.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-15T18:27:24,500 copying gimmemotifs/commands/motif2factors.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-15T18:27:24,502 copying gimmemotifs/commands/maelstrom.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-15T18:27:24,503 copying gimmemotifs/commands/logo.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-15T18:27:24,505 copying gimmemotifs/commands/motifs.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-15T18:27:24,507 copying gimmemotifs/commands/pfmscan.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-15T18:27:24,509 copying gimmemotifs/commands/match.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-15T18:27:24,510 copying gimmemotifs/commands/background.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-15T18:27:24,512 copying gimmemotifs/commands/threshold.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-15T18:27:24,514 copying gimmemotifs/commands/diff.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-15T18:27:24,516 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/db 2023-09-15T18:27:24,517 copying gimmemotifs/db/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/db 2023-09-15T18:27:24,520 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-15T18:27:24,521 copying gimmemotifs/motif/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-15T18:27:24,524 copying gimmemotifs/motif/_scanning.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-15T18:27:24,527 copying gimmemotifs/motif/_comparison.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-15T18:27:24,529 copying gimmemotifs/motif/_plotting.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-15T18:27:24,532 copying gimmemotifs/included_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-15T18:27:24,534 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,535 copying gimmemotifs/tools/mdmodule.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,537 copying gimmemotifs/tools/homer.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,539 copying gimmemotifs/tools/amd.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,541 copying gimmemotifs/tools/bioprospector.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,543 copying gimmemotifs/tools/hms.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,545 copying gimmemotifs/tools/gadem.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,547 copying gimmemotifs/tools/weeder.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,549 copying gimmemotifs/tools/prosampler.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,551 copying gimmemotifs/tools/xxmotif.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,553 copying gimmemotifs/tools/jaspar.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,555 copying gimmemotifs/tools/meme.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,556 copying gimmemotifs/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,558 copying gimmemotifs/tools/yamda.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,560 copying gimmemotifs/tools/chipmunk.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,562 copying gimmemotifs/tools/dreme.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,565 copying gimmemotifs/tools/dinamo.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,567 copying gimmemotifs/tools/rpmcmc.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,569 copying gimmemotifs/tools/trawler.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,572 copying gimmemotifs/tools/improbizer.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,574 copying gimmemotifs/tools/motifprogram.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,576 copying gimmemotifs/tools/posmo.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,578 copying gimmemotifs/tools/memew.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,592 copying gimmemotifs/tools/motifsampler.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-15T18:27:24,594 running egg_info 2023-09-15T18:27:24,671 writing gimmemotifs.egg-info/PKG-INFO 2023-09-15T18:27:24,674 writing dependency_links to gimmemotifs.egg-info/dependency_links.txt 2023-09-15T18:27:24,676 writing requirements to gimmemotifs.egg-info/requires.txt 2023-09-15T18:27:24,677 writing top-level names to gimmemotifs.egg-info/top_level.txt 2023-09-15T18:27:24,711 reading manifest file 'gimmemotifs.egg-info/SOURCES.txt' 2023-09-15T18:27:24,766 reading manifest template 'MANIFEST.in' 2023-09-15T18:27:24,767 warning: no files found matching 'run_tests.py' 2023-09-15T18:27:24,829 adding license file 'COPYING' 2023-09-15T18:27:24,850 writing manifest file 'gimmemotifs.egg-info/SOURCES.txt' 2023-09-15T18:27:24,852 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.bg' is absent from the `packages` configuration. 2023-09-15T18:27:24,853 !! 2023-09-15T18:27:24,854 ******************************************************************************** 2023-09-15T18:27:24,855 ############################ 2023-09-15T18:27:24,856 # Package would be ignored # 2023-09-15T18:27:24,856 ############################ 2023-09-15T18:27:24,857 Python recognizes 'data.bg' as an importable package[^1], 2023-09-15T18:27:24,858 but it is absent from setuptools' `packages` configuration. 2023-09-15T18:27:24,859 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-15T18:27:24,859 package, please make sure that 'data.bg' is explicitly added 2023-09-15T18:27:24,860 to the `packages` configuration field. 2023-09-15T18:27:24,861 Alternatively, you can also rely on setuptools' discovery methods 2023-09-15T18:27:24,862 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-15T18:27:24,862 instead of `find_packages(...)`/`find:`). 2023-09-15T18:27:24,863 You can read more about "package discovery" on setuptools documentation page: 2023-09-15T18:27:24,864 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-15T18:27:24,865 If you don't want 'data.bg' to be distributed and are 2023-09-15T18:27:24,865 already explicitly excluding 'data.bg' via 2023-09-15T18:27:24,866 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-15T18:27:24,866 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-15T18:27:24,867 combination with a more fine grained `package-data` configuration. 2023-09-15T18:27:24,868 You can read more about "package data files" on setuptools documentation page: 2023-09-15T18:27:24,869 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-15T18:27:24,871 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-15T18:27:24,872 even if it does not contain any `.py` files. 2023-09-15T18:27:24,872 On the other hand, currently there is no concept of package data 2023-09-15T18:27:24,873 directory, all directories are treated like packages. 2023-09-15T18:27:24,873 ******************************************************************************** 2023-09-15T18:27:24,874 !! 2023-09-15T18:27:24,874 check.warn(importable) 2023-09-15T18:27:24,875 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.cfg' is absent from the `packages` configuration. 2023-09-15T18:27:24,876 !! 2023-09-15T18:27:24,876 ******************************************************************************** 2023-09-15T18:27:24,877 ############################ 2023-09-15T18:27:24,877 # Package would be ignored # 2023-09-15T18:27:24,878 ############################ 2023-09-15T18:27:24,878 Python recognizes 'data.cfg' as an importable package[^1], 2023-09-15T18:27:24,879 but it is absent from setuptools' `packages` configuration. 2023-09-15T18:27:24,880 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-15T18:27:24,880 package, please make sure that 'data.cfg' is explicitly added 2023-09-15T18:27:24,881 to the `packages` configuration field. 2023-09-15T18:27:24,882 Alternatively, you can also rely on setuptools' discovery methods 2023-09-15T18:27:24,882 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-15T18:27:24,883 instead of `find_packages(...)`/`find:`). 2023-09-15T18:27:24,884 You can read more about "package discovery" on setuptools documentation page: 2023-09-15T18:27:24,885 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-15T18:27:24,886 If you don't want 'data.cfg' to be distributed and are 2023-09-15T18:27:24,886 already explicitly excluding 'data.cfg' via 2023-09-15T18:27:24,887 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-15T18:27:24,888 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-15T18:27:24,888 combination with a more fine grained `package-data` configuration. 2023-09-15T18:27:24,889 You can read more about "package data files" on setuptools documentation page: 2023-09-15T18:27:24,890 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-15T18:27:24,892 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-15T18:27:24,892 even if it does not contain any `.py` files. 2023-09-15T18:27:24,893 On the other hand, currently there is no concept of package data 2023-09-15T18:27:24,893 directory, all directories are treated like packages. 2023-09-15T18:27:24,894 ******************************************************************************** 2023-09-15T18:27:24,895 !! 2023-09-15T18:27:24,895 check.warn(importable) 2023-09-15T18:27:24,896 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.examples' is absent from the `packages` configuration. 2023-09-15T18:27:24,896 !! 2023-09-15T18:27:24,899 ******************************************************************************** 2023-09-15T18:27:24,900 ############################ 2023-09-15T18:27:24,900 # Package would be ignored # 2023-09-15T18:27:24,901 ############################ 2023-09-15T18:27:24,901 Python recognizes 'data.examples' as an importable package[^1], 2023-09-15T18:27:24,902 but it is absent from setuptools' `packages` configuration. 2023-09-15T18:27:24,903 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-15T18:27:24,904 package, please make sure that 'data.examples' is explicitly added 2023-09-15T18:27:24,905 to the `packages` configuration field. 2023-09-15T18:27:24,906 Alternatively, you can also rely on setuptools' discovery methods 2023-09-15T18:27:24,906 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-15T18:27:24,906 instead of `find_packages(...)`/`find:`). 2023-09-15T18:27:24,907 You can read more about "package discovery" on setuptools documentation page: 2023-09-15T18:27:24,908 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-15T18:27:24,912 If you don't want 'data.examples' to be distributed and are 2023-09-15T18:27:24,912 already explicitly excluding 'data.examples' via 2023-09-15T18:27:24,913 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-15T18:27:24,913 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-15T18:27:24,914 combination with a more fine grained `package-data` configuration. 2023-09-15T18:27:24,914 You can read more about "package data files" on setuptools documentation page: 2023-09-15T18:27:24,915 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-15T18:27:24,916 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-15T18:27:24,917 even if it does not contain any `.py` files. 2023-09-15T18:27:24,917 On the other hand, currently there is no concept of package data 2023-09-15T18:27:24,918 directory, all directories are treated like packages. 2023-09-15T18:27:24,918 ******************************************************************************** 2023-09-15T18:27:24,919 !! 2023-09-15T18:27:24,920 check.warn(importable) 2023-09-15T18:27:24,920 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.motif_databases' is absent from the `packages` configuration. 2023-09-15T18:27:24,921 !! 2023-09-15T18:27:24,922 ******************************************************************************** 2023-09-15T18:27:24,922 ############################ 2023-09-15T18:27:24,923 # Package would be ignored # 2023-09-15T18:27:24,924 ############################ 2023-09-15T18:27:24,926 Python recognizes 'data.motif_databases' as an importable package[^1], 2023-09-15T18:27:24,926 but it is absent from setuptools' `packages` configuration. 2023-09-15T18:27:24,934 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-15T18:27:24,935 package, please make sure that 'data.motif_databases' is explicitly added 2023-09-15T18:27:24,935 to the `packages` configuration field. 2023-09-15T18:27:24,936 Alternatively, you can also rely on setuptools' discovery methods 2023-09-15T18:27:24,937 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-15T18:27:24,937 instead of `find_packages(...)`/`find:`). 2023-09-15T18:27:24,939 You can read more about "package discovery" on setuptools documentation page: 2023-09-15T18:27:24,940 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-15T18:27:24,941 If you don't want 'data.motif_databases' to be distributed and are 2023-09-15T18:27:24,941 already explicitly excluding 'data.motif_databases' via 2023-09-15T18:27:24,942 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-15T18:27:24,943 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-15T18:27:24,943 combination with a more fine grained `package-data` configuration. 2023-09-15T18:27:24,944 You can read more about "package data files" on setuptools documentation page: 2023-09-15T18:27:24,946 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-15T18:27:24,947 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-15T18:27:24,948 even if it does not contain any `.py` files. 2023-09-15T18:27:24,948 On the other hand, currently there is no concept of package data 2023-09-15T18:27:24,948 directory, all directories are treated like packages. 2023-09-15T18:27:24,949 ******************************************************************************** 2023-09-15T18:27:24,950 !! 2023-09-15T18:27:24,950 check.warn(importable) 2023-09-15T18:27:24,951 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.score_dists' is absent from the `packages` configuration. 2023-09-15T18:27:24,951 !! 2023-09-15T18:27:24,957 ******************************************************************************** 2023-09-15T18:27:24,966 ############################ 2023-09-15T18:27:24,973 # Package would be ignored # 2023-09-15T18:27:24,982 ############################ 2023-09-15T18:27:24,990 Python recognizes 'data.score_dists' as an importable package[^1], 2023-09-15T18:27:24,992 but it is absent from setuptools' `packages` configuration. 2023-09-15T18:27:24,993 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-15T18:27:24,993 package, please make sure that 'data.score_dists' is explicitly added 2023-09-15T18:27:24,994 to the `packages` configuration field. 2023-09-15T18:27:24,995 Alternatively, you can also rely on setuptools' discovery methods 2023-09-15T18:27:24,996 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-15T18:27:24,997 instead of `find_packages(...)`/`find:`). 2023-09-15T18:27:24,998 You can read more about "package discovery" on setuptools documentation page: 2023-09-15T18:27:24,999 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-15T18:27:25,000 If you don't want 'data.score_dists' to be distributed and are 2023-09-15T18:27:25,001 already explicitly excluding 'data.score_dists' via 2023-09-15T18:27:25,001 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-15T18:27:25,002 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-15T18:27:25,003 combination with a more fine grained `package-data` configuration. 2023-09-15T18:27:25,006 You can read more about "package data files" on setuptools documentation page: 2023-09-15T18:27:25,009 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-15T18:27:25,015 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-15T18:27:25,016 even if it does not contain any `.py` files. 2023-09-15T18:27:25,017 On the other hand, currently there is no concept of package data 2023-09-15T18:27:25,017 directory, all directories are treated like packages. 2023-09-15T18:27:25,018 ******************************************************************************** 2023-09-15T18:27:25,019 !! 2023-09-15T18:27:25,019 check.warn(importable) 2023-09-15T18:27:25,020 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.templates' is absent from the `packages` configuration. 2023-09-15T18:27:25,020 !! 2023-09-15T18:27:25,021 ******************************************************************************** 2023-09-15T18:27:25,022 ############################ 2023-09-15T18:27:25,023 # Package would be ignored # 2023-09-15T18:27:25,023 ############################ 2023-09-15T18:27:25,026 Python recognizes 'data.templates' as an importable package[^1], 2023-09-15T18:27:25,028 but it is absent from setuptools' `packages` configuration. 2023-09-15T18:27:25,029 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-15T18:27:25,030 package, please make sure that 'data.templates' is explicitly added 2023-09-15T18:27:25,030 to the `packages` configuration field. 2023-09-15T18:27:25,031 Alternatively, you can also rely on setuptools' discovery methods 2023-09-15T18:27:25,032 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-15T18:27:25,032 instead of `find_packages(...)`/`find:`). 2023-09-15T18:27:25,033 You can read more about "package discovery" on setuptools documentation page: 2023-09-15T18:27:25,036 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-15T18:27:25,040 If you don't want 'data.templates' to be distributed and are 2023-09-15T18:27:25,041 already explicitly excluding 'data.templates' via 2023-09-15T18:27:25,041 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-15T18:27:25,042 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-15T18:27:25,042 combination with a more fine grained `package-data` configuration. 2023-09-15T18:27:25,044 You can read more about "package data files" on setuptools documentation page: 2023-09-15T18:27:25,045 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-15T18:27:25,046 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-15T18:27:25,047 even if it does not contain any `.py` files. 2023-09-15T18:27:25,051 On the other hand, currently there is no concept of package data 2023-09-15T18:27:25,052 directory, all directories are treated like packages. 2023-09-15T18:27:25,053 ******************************************************************************** 2023-09-15T18:27:25,054 !! 2023-09-15T18:27:25,054 check.warn(importable) 2023-09-15T18:27:25,055 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.templates.sortable' is absent from the `packages` configuration. 2023-09-15T18:27:25,056 !! 2023-09-15T18:27:25,057 ******************************************************************************** 2023-09-15T18:27:25,058 ############################ 2023-09-15T18:27:25,058 # Package would be ignored # 2023-09-15T18:27:25,059 ############################ 2023-09-15T18:27:25,061 Python recognizes 'data.templates.sortable' as an importable package[^1], 2023-09-15T18:27:25,062 but it is absent from setuptools' `packages` configuration. 2023-09-15T18:27:25,065 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-15T18:27:25,066 package, please make sure that 'data.templates.sortable' is explicitly added 2023-09-15T18:27:25,066 to the `packages` configuration field. 2023-09-15T18:27:25,067 Alternatively, you can also rely on setuptools' discovery methods 2023-09-15T18:27:25,068 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-15T18:27:25,068 instead of `find_packages(...)`/`find:`). 2023-09-15T18:27:25,069 You can read more about "package discovery" on setuptools documentation page: 2023-09-15T18:27:25,070 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-15T18:27:25,071 If you don't want 'data.templates.sortable' to be distributed and are 2023-09-15T18:27:25,072 already explicitly excluding 'data.templates.sortable' via 2023-09-15T18:27:25,073 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-15T18:27:25,074 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-15T18:27:25,074 combination with a more fine grained `package-data` configuration. 2023-09-15T18:27:25,075 You can read more about "package data files" on setuptools documentation page: 2023-09-15T18:27:25,076 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-15T18:27:25,078 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-15T18:27:25,079 even if it does not contain any `.py` files. 2023-09-15T18:27:25,084 On the other hand, currently there is no concept of package data 2023-09-15T18:27:25,084 directory, all directories are treated like packages. 2023-09-15T18:27:25,086 ******************************************************************************** 2023-09-15T18:27:25,091 !! 2023-09-15T18:27:25,092 check.warn(importable) 2023-09-15T18:27:25,092 copying data/test.develop.out -> build/lib.linux-armv7l-cpython-311/data 2023-09-15T18:27:25,093 creating build/lib.linux-armv7l-cpython-311/data/bg 2023-09-15T18:27:25,093 copying data/bg/hg18.MotifSampler.bg -> build/lib.linux-armv7l-cpython-311/data/bg 2023-09-15T18:27:25,094 copying data/bg/hg19.MotifSampler.bg -> build/lib.linux-armv7l-cpython-311/data/bg 2023-09-15T18:27:25,095 copying data/bg/hg38.MotifSampler.bg -> build/lib.linux-armv7l-cpython-311/data/bg 2023-09-15T18:27:25,096 copying data/bg/mm10.MotifSampler.bg -> build/lib.linux-armv7l-cpython-311/data/bg 2023-09-15T18:27:25,096 copying data/bg/mm9.MotifSampler.bg -> build/lib.linux-armv7l-cpython-311/data/bg 2023-09-15T18:27:25,097 copying data/bg/xenTro2.MotifSampler.bg -> build/lib.linux-armv7l-cpython-311/data/bg 2023-09-15T18:27:25,097 creating build/lib.linux-armv7l-cpython-311/data/cfg 2023-09-15T18:27:25,098 copying data/cfg/gimmemotifs.default.cfg -> build/lib.linux-armv7l-cpython-311/data/cfg 2023-09-15T18:27:25,101 creating build/lib.linux-armv7l-cpython-311/data/examples 2023-09-15T18:27:25,102 copying data/examples/Gm12878.CTCF.top500.w200.fa -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-15T18:27:25,104 copying data/examples/MA0099.3.jaspar -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-15T18:27:25,106 copying data/examples/TAp73alpha.bed -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-15T18:27:25,106 copying data/examples/TAp73alpha.fa -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-15T18:27:25,107 copying data/examples/example.pfm -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-15T18:27:25,107 copying data/examples/test.small.fa -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-15T18:27:25,108 creating build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,108 copying data/motif_databases/CIS-BP.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,109 copying data/motif_databases/CIS-BP.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,109 copying data/motif_databases/ENCODE.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,110 copying data/motif_databases/ENCODE.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,110 copying data/motif_databases/HOCOMOCOv10_HUMAN.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,111 copying data/motif_databases/HOCOMOCOv10_HUMAN.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,112 copying data/motif_databases/HOCOMOCOv10_MOUSE.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,113 copying data/motif_databases/HOCOMOCOv10_MOUSE.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,113 copying data/motif_databases/HOCOMOCOv11_HUMAN.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,114 copying data/motif_databases/HOCOMOCOv11_HUMAN.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,114 copying data/motif_databases/HOCOMOCOv11_MOUSE.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,115 copying data/motif_databases/HOCOMOCOv11_MOUSE.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,115 copying data/motif_databases/HOMER.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,116 copying data/motif_databases/HOMER.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,116 copying data/motif_databases/IMAGE.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,116 copying data/motif_databases/IMAGE.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,117 copying data/motif_databases/JASPAR2018.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,117 copying data/motif_databases/JASPAR2018.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,118 copying data/motif_databases/JASPAR2018_fungi.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,118 copying data/motif_databases/JASPAR2018_fungi.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,119 copying data/motif_databases/JASPAR2018_insects.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,119 copying data/motif_databases/JASPAR2018_insects.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,120 copying data/motif_databases/JASPAR2018_nematodes.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,121 copying data/motif_databases/JASPAR2018_nematodes.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,123 copying data/motif_databases/JASPAR2018_plants.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,126 copying data/motif_databases/JASPAR2018_plants.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,131 copying data/motif_databases/JASPAR2018_urochordates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,133 copying data/motif_databases/JASPAR2018_urochordates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,135 copying data/motif_databases/JASPAR2018_vertebrates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,137 copying data/motif_databases/JASPAR2018_vertebrates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,143 copying data/motif_databases/JASPAR2020.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,146 copying data/motif_databases/JASPAR2020.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,159 copying data/motif_databases/JASPAR2020_fungi.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,161 copying data/motif_databases/JASPAR2020_fungi.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,165 copying data/motif_databases/JASPAR2020_insects.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,168 copying data/motif_databases/JASPAR2020_insects.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,171 copying data/motif_databases/JASPAR2020_nematodes.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,173 copying data/motif_databases/JASPAR2020_nematodes.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,176 copying data/motif_databases/JASPAR2020_plants.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,179 copying data/motif_databases/JASPAR2020_plants.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,185 copying data/motif_databases/JASPAR2020_urochordates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,188 copying data/motif_databases/JASPAR2020_urochordates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,190 copying data/motif_databases/JASPAR2020_vertebrates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,193 copying data/motif_databases/JASPAR2020_vertebrates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,201 copying data/motif_databases/JASPAR2022.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,205 copying data/motif_databases/JASPAR2022.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,217 copying data/motif_databases/JASPAR2022_fungi.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,220 copying data/motif_databases/JASPAR2022_fungi.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,223 copying data/motif_databases/JASPAR2022_insects.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,225 copying data/motif_databases/JASPAR2022_insects.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,228 copying data/motif_databases/JASPAR2022_nematodes.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,230 copying data/motif_databases/JASPAR2022_nematodes.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,232 copying data/motif_databases/JASPAR2022_plants.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,235 copying data/motif_databases/JASPAR2022_plants.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,241 copying data/motif_databases/JASPAR2022_urochordates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,243 copying data/motif_databases/JASPAR2022_urochordates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,246 copying data/motif_databases/JASPAR2022_vertebrates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,249 copying data/motif_databases/JASPAR2022_vertebrates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,257 copying data/motif_databases/RSAT_insects.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,259 copying data/motif_databases/RSAT_insects.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,263 copying data/motif_databases/RSAT_plants.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,265 copying data/motif_databases/RSAT_plants.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,270 copying data/motif_databases/RSAT_vertebrates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,272 copying data/motif_databases/RSAT_vertebrates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,286 copying data/motif_databases/SwissRegulon.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,289 copying data/motif_databases/SwissRegulon.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,295 copying data/motif_databases/factorbook.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,298 copying data/motif_databases/factorbook.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,303 copying data/motif_databases/gimme.invertebrate.v1.0.pwm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,309 copying data/motif_databases/gimme.plant.v1.0.pwm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,313 copying data/motif_databases/gimme.vertebrate.v3.1.factor2motifs.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,317 copying data/motif_databases/gimme.vertebrate.v3.1.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,320 copying data/motif_databases/gimme.vertebrate.v3.1.pwm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,330 copying data/motif_databases/gimme.vertebrate.v5.0.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,338 copying data/motif_databases/gimme.vertebrate.v5.0.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-15T18:27:25,353 creating build/lib.linux-armv7l-cpython-311/data/score_dists 2023-09-15T18:27:25,354 copying data/score_dists/dic2_bg_mean_sd.txt -> build/lib.linux-armv7l-cpython-311/data/score_dists 2023-09-15T18:27:25,357 copying data/score_dists/dic2_mean_sd.txt -> build/lib.linux-armv7l-cpython-311/data/score_dists 2023-09-15T18:27:25,360 copying data/score_dists/total_wic_mean_score_dist.txt -> build/lib.linux-armv7l-cpython-311/data/score_dists 2023-09-15T18:27:25,362 creating build/lib.linux-armv7l-cpython-311/data/templates 2023-09-15T18:27:25,364 copying data/templates/cluster_template.jinja.html -> build/lib.linux-armv7l-cpython-311/data/templates 2023-09-15T18:27:25,366 copying data/templates/report_template.jinja.html -> build/lib.linux-armv7l-cpython-311/data/templates 2023-09-15T18:27:25,369 copying data/templates/star.png -> build/lib.linux-armv7l-cpython-311/data/templates 2023-09-15T18:27:25,372 copying data/templates/star_silver.png -> build/lib.linux-armv7l-cpython-311/data/templates 2023-09-15T18:27:25,374 copying data/templates/table.tpl -> build/lib.linux-armv7l-cpython-311/data/templates 2023-09-15T18:27:25,377 creating build/lib.linux-armv7l-cpython-311/data/templates/sortable 2023-09-15T18:27:25,378 copying data/templates/sortable/sortable-theme-slick.css -> build/lib.linux-armv7l-cpython-311/data/templates/sortable 2023-09-15T18:27:25,381 copying data/templates/sortable/sortable.min.js -> build/lib.linux-armv7l-cpython-311/data/templates/sortable 2023-09-15T18:27:25,383 copying gimmemotifs/c_metrics.c -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:25,391 UPDATING build/lib.linux-armv7l-cpython-311/gimmemotifs/_version.py 2023-09-15T18:27:25,392 set build/lib.linux-armv7l-cpython-311/gimmemotifs/_version.py to '0.17.0' 2023-09-15T18:27:25,393 running build_ext 2023-09-15T18:27:25,899 building 'gimmemotifs.c_metrics' extension 2023-09-15T18:27:25,900 creating build/temp.linux-armv7l-cpython-311 2023-09-15T18:27:25,901 creating build/temp.linux-armv7l-cpython-311/gimmemotifs 2023-09-15T18:27:25,902 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c gimmemotifs/c_metrics.c -o build/temp.linux-armv7l-cpython-311/gimmemotifs/c_metrics.o 2023-09-15T18:27:26,262 gimmemotifs/c_metrics.c: In function ‘get_truncate_len’: 2023-09-15T18:27:26,263 gimmemotifs/c_metrics.c:314:5: warning: type of ‘len1’ defaults to ‘int’ [-Wimplicit-int] 2023-09-15T18:27:26,264 314 | int get_truncate_len(len1, len2, pos) { 2023-09-15T18:27:26,264 | ^~~~~~~~~~~~~~~~ 2023-09-15T18:27:26,265 gimmemotifs/c_metrics.c:314:5: warning: type of ‘len2’ defaults to ‘int’ [-Wimplicit-int] 2023-09-15T18:27:26,266 gimmemotifs/c_metrics.c:314:5: warning: type of ‘pos’ defaults to ‘int’ [-Wimplicit-int] 2023-09-15T18:27:26,271 gimmemotifs/c_metrics.c: In function ‘c_metrics_pwmscan’: 2023-09-15T18:27:26,271 gimmemotifs/c_metrics.c:563:16: warning: unused variable ‘pwm_min’ [-Wunused-variable] 2023-09-15T18:27:26,272 563 | double pwm_min = -50; 2023-09-15T18:27:26,272 | ^~~~~~~ 2023-09-15T18:27:26,273 gimmemotifs/c_metrics.c:562:13: warning: unused variable ‘c’ [-Wunused-variable] 2023-09-15T18:27:26,274 562 | int c; 2023-09-15T18:27:26,274 | ^ 2023-09-15T18:27:26,277 gimmemotifs/c_metrics.c: At top level: 2023-09-15T18:27:26,278 gimmemotifs/c_metrics.c:900:22: warning: initialization of ‘int’ from ‘void *’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-15T18:27:26,279 900 | {NULL, NULL, NULL, 0, NULL} 2023-09-15T18:27:26,279 | ^~~~ 2023-09-15T18:27:26,280 gimmemotifs/c_metrics.c:900:22: note: (near initialization for ‘CoreMethods[4].ml_flags’) 2023-09-15T18:27:26,280 gimmemotifs/c_metrics.c:900:31: warning: excess elements in struct initializer 2023-09-15T18:27:26,281 900 | {NULL, NULL, NULL, 0, NULL} 2023-09-15T18:27:26,282 | ^~~~ 2023-09-15T18:27:26,283 gimmemotifs/c_metrics.c:900:31: note: (near initialization for ‘CoreMethods[4]’) 2023-09-15T18:27:27,620 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/gimmemotifs/c_metrics.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/gimmemotifs/c_metrics.cpython-311-arm-linux-gnueabihf.so 2023-09-15T18:27:27,713 running build_scripts 2023-09-15T18:27:27,714 creating build/scripts-3.11 2023-09-15T18:27:27,715 copying and adjusting scripts/gimme -> build/scripts-3.11 2023-09-15T18:27:27,717 copying and adjusting scripts/combine_peaks -> build/scripts-3.11 2023-09-15T18:27:27,719 copying and adjusting scripts/coverage_table -> build/scripts-3.11 2023-09-15T18:27:27,720 changing mode of build/scripts-3.11/gimme from 644 to 755 2023-09-15T18:27:27,721 changing mode of build/scripts-3.11/combine_peaks from 644 to 755 2023-09-15T18:27:27,721 changing mode of build/scripts-3.11/coverage_table from 644 to 755 2023-09-15T18:27:27,746 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-15T18:27:27,746 !! 2023-09-15T18:27:27,747 ******************************************************************************** 2023-09-15T18:27:27,748 Please avoid running ``setup.py`` directly. 2023-09-15T18:27:27,749 Instead, use pypa/build, pypa/installer or other 2023-09-15T18:27:27,749 standards-based tools. 2023-09-15T18:27:27,750 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-15T18:27:27,751 ******************************************************************************** 2023-09-15T18:27:27,752 !! 2023-09-15T18:27:27,753 self.initialize_options() 2023-09-15T18:27:27,774 installing to build/bdist.linux-armv7l/wheel 2023-09-15T18:27:27,775 running install 2023-09-15T18:27:27,800 running install_lib 2023-09-15T18:27:27,825 creating build/bdist.linux-armv7l 2023-09-15T18:27:27,826 creating build/bdist.linux-armv7l/wheel 2023-09-15T18:27:27,828 creating build/bdist.linux-armv7l/wheel/data 2023-09-15T18:27:27,831 creating build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,832 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,836 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_urochordates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,840 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.invertebrate.v1.0.pwm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,847 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/RSAT_vertebrates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,864 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_plants.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,866 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv11_HUMAN.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,869 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/RSAT_plants.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,874 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_plants.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,882 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,893 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_nematodes.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,896 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_insects.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,898 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv10_MOUSE.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,905 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_nematodes.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,908 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/factorbook.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,913 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_nematodes.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,915 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,927 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_fungi.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,929 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.vertebrate.v5.0.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,937 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_insects.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,940 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_vertebrates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,945 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv10_MOUSE.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,948 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_insects.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,950 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/IMAGE.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,953 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.vertebrate.v5.0.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,975 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_urochordates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,977 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_nematodes.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,979 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_fungi.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,981 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/SwissRegulon.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,988 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/factorbook.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,990 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_plants.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,997 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_nematodes.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:27,998 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_insects.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,001 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_vertebrates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,004 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.plant.v1.0.pwm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,007 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_plants.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,015 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_vertebrates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,025 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_urochordates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,027 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/RSAT_plants.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,028 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/ENCODE.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,055 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_plants.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,057 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/SwissRegulon.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,059 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv11_MOUSE.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,066 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/RSAT_insects.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,070 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_fungi.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,073 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.vertebrate.v3.1.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,076 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_nematodes.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,078 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv10_HUMAN.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,080 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/RSAT_vertebrates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,082 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/CIS-BP.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,097 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_vertebrates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,103 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,106 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_urochordates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,108 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_urochordates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,110 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/IMAGE.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,126 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOMER.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,129 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_fungi.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,132 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv11_MOUSE.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,135 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/RSAT_insects.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,137 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_fungi.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,140 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_plants.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,142 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_insects.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,145 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_vertebrates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,147 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,157 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,160 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_insects.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,163 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_urochordates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,166 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/ENCODE.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,170 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_vertebrates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,173 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv11_HUMAN.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,186 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_fungi.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,189 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.vertebrate.v3.1.pwm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,208 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv10_HUMAN.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,222 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOMER.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,229 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.vertebrate.v3.1.factor2motifs.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,233 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/CIS-BP.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-15T18:27:28,318 creating build/bdist.linux-armv7l/wheel/data/templates 2023-09-15T18:27:28,319 creating build/bdist.linux-armv7l/wheel/data/templates/sortable 2023-09-15T18:27:28,320 copying build/lib.linux-armv7l-cpython-311/data/templates/sortable/sortable.min.js -> build/bdist.linux-armv7l/wheel/data/templates/sortable 2023-09-15T18:27:28,322 copying build/lib.linux-armv7l-cpython-311/data/templates/sortable/sortable-theme-slick.css -> build/bdist.linux-armv7l/wheel/data/templates/sortable 2023-09-15T18:27:28,324 copying build/lib.linux-armv7l-cpython-311/data/templates/star_silver.png -> build/bdist.linux-armv7l/wheel/data/templates 2023-09-15T18:27:28,326 copying build/lib.linux-armv7l-cpython-311/data/templates/star.png -> build/bdist.linux-armv7l/wheel/data/templates 2023-09-15T18:27:28,328 copying build/lib.linux-armv7l-cpython-311/data/templates/table.tpl -> build/bdist.linux-armv7l/wheel/data/templates 2023-09-15T18:27:28,330 copying build/lib.linux-armv7l-cpython-311/data/templates/cluster_template.jinja.html -> build/bdist.linux-armv7l/wheel/data/templates 2023-09-15T18:27:28,332 copying build/lib.linux-armv7l-cpython-311/data/templates/report_template.jinja.html -> build/bdist.linux-armv7l/wheel/data/templates 2023-09-15T18:27:28,334 copying build/lib.linux-armv7l-cpython-311/data/test.develop.out -> build/bdist.linux-armv7l/wheel/data 2023-09-15T18:27:28,335 copying build/lib.linux-armv7l-cpython-311/data/__init__.py -> build/bdist.linux-armv7l/wheel/data 2023-09-15T18:27:28,337 creating build/bdist.linux-armv7l/wheel/data/score_dists 2023-09-15T18:27:28,338 copying build/lib.linux-armv7l-cpython-311/data/score_dists/dic2_mean_sd.txt -> build/bdist.linux-armv7l/wheel/data/score_dists 2023-09-15T18:27:28,340 copying build/lib.linux-armv7l-cpython-311/data/score_dists/dic2_bg_mean_sd.txt -> build/bdist.linux-armv7l/wheel/data/score_dists 2023-09-15T18:27:28,342 copying build/lib.linux-armv7l-cpython-311/data/score_dists/total_wic_mean_score_dist.txt -> build/bdist.linux-armv7l/wheel/data/score_dists 2023-09-15T18:27:28,345 creating build/bdist.linux-armv7l/wheel/data/examples 2023-09-15T18:27:28,346 copying build/lib.linux-armv7l-cpython-311/data/examples/example.pfm -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-15T18:27:28,348 copying build/lib.linux-armv7l-cpython-311/data/examples/Gm12878.CTCF.top500.w200.fa -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-15T18:27:28,351 copying build/lib.linux-armv7l-cpython-311/data/examples/MA0099.3.jaspar -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-15T18:27:28,353 copying build/lib.linux-armv7l-cpython-311/data/examples/TAp73alpha.fa -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-15T18:27:28,359 copying build/lib.linux-armv7l-cpython-311/data/examples/test.small.fa -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-15T18:27:28,360 copying build/lib.linux-armv7l-cpython-311/data/examples/TAp73alpha.bed -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-15T18:27:28,363 creating build/bdist.linux-armv7l/wheel/data/bg 2023-09-15T18:27:28,364 copying build/lib.linux-armv7l-cpython-311/data/bg/hg18.MotifSampler.bg -> build/bdist.linux-armv7l/wheel/data/bg 2023-09-15T18:27:28,366 copying build/lib.linux-armv7l-cpython-311/data/bg/mm9.MotifSampler.bg -> build/bdist.linux-armv7l/wheel/data/bg 2023-09-15T18:27:28,368 copying build/lib.linux-armv7l-cpython-311/data/bg/xenTro2.MotifSampler.bg -> build/bdist.linux-armv7l/wheel/data/bg 2023-09-15T18:27:28,370 copying build/lib.linux-armv7l-cpython-311/data/bg/hg19.MotifSampler.bg -> build/bdist.linux-armv7l/wheel/data/bg 2023-09-15T18:27:28,372 copying build/lib.linux-armv7l-cpython-311/data/bg/hg38.MotifSampler.bg -> build/bdist.linux-armv7l/wheel/data/bg 2023-09-15T18:27:28,374 copying build/lib.linux-armv7l-cpython-311/data/bg/mm10.MotifSampler.bg -> build/bdist.linux-armv7l/wheel/data/bg 2023-09-15T18:27:28,376 creating build/bdist.linux-armv7l/wheel/data/cfg 2023-09-15T18:27:28,377 copying build/lib.linux-armv7l-cpython-311/data/cfg/gimmemotifs.default.cfg -> build/bdist.linux-armv7l/wheel/data/cfg 2023-09-15T18:27:28,379 creating build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,380 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/config.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,382 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/_version.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,384 creating build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-15T18:27:28,385 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/cluster.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-15T18:27:28,387 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/prediction.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-15T18:27:28,389 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-15T18:27:28,390 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/location.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-15T18:27:28,392 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/motif2factors.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-15T18:27:28,394 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/maelstrom.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-15T18:27:28,395 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/logo.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-15T18:27:28,397 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/motifs.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-15T18:27:28,399 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/pfmscan.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-15T18:27:28,400 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/match.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-15T18:27:28,402 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/background.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-15T18:27:28,404 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/threshold.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-15T18:27:28,405 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/diff.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-15T18:27:28,407 creating build/bdist.linux-armv7l/wheel/gimmemotifs/db 2023-09-15T18:27:28,408 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/db/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/db 2023-09-15T18:27:28,411 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/plot.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,413 creating build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-15T18:27:28,414 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/motif/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-15T18:27:28,417 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/motif/_scanning.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-15T18:27:28,419 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/motif/_comparison.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-15T18:27:28,422 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/motif/_plotting.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-15T18:27:28,424 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/denovo.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,426 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/cluster.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,429 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/prediction.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,431 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/orthologs.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,435 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,437 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/shutils.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,440 creating build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-15T18:27:28,441 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ameme -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-15T18:27:28,450 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/clusterwd -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-15T18:27:28,453 creating build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/HMS 2023-09-15T18:27:28,454 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS/theta2.txt -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/HMS 2023-09-15T18:27:28,456 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS/theta3.txt -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/HMS 2023-09-15T18:27:28,457 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS/theta1.txt -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/HMS 2023-09-15T18:27:28,459 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS/hms -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/HMS 2023-09-15T18:27:28,462 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS/theta0.txt -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/HMS 2023-09-15T18:27:28,464 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/AMD.bin -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-15T18:27:28,467 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/MotifSampler -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-15T18:27:28,493 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-15T18:27:28,494 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/MDmodule -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-15T18:27:28,497 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/posmo -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-15T18:27:28,500 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/CreateBackgroundModel -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-15T18:27:28,531 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/BioProspector -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-15T18:27:28,534 creating build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/ChIPMunk 2023-09-15T18:27:28,535 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ChIPMunk/chipmunk.jar -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/ChIPMunk 2023-09-15T18:27:28,668 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ChIPMunk/ChIPMunk.sh -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/ChIPMunk 2023-09-15T18:27:28,670 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/preprocessing.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,672 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/scanner.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,675 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/moap.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,677 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/validation.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,679 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/comparison.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,682 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/utils.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,684 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/c_metrics.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,688 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/maelstrom.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,690 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/fasta.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,692 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/stats.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,694 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/rank.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,697 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/cli.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,699 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/report.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,701 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/background.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,704 creating build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,705 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/mdmodule.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,707 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/homer.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,709 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/amd.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,711 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/bioprospector.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,713 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/hms.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,715 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/gadem.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,717 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/weeder.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,718 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/prosampler.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,720 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/xxmotif.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,722 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/jaspar.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,724 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/meme.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,726 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,727 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/yamda.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,729 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/chipmunk.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,731 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/dreme.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,733 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/dinamo.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,735 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/rpmcmc.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,736 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/trawler.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,738 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/improbizer.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,740 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/motifprogram.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,742 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/posmo.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,743 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/memew.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,745 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/motifsampler.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-15T18:27:28,747 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/c_metrics.c -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,750 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/rocmetrics.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,752 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/utils.fix.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-15T18:27:28,754 running install_egg_info 2023-09-15T18:27:28,785 Copying gimmemotifs.egg-info to build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.0-py3.11.egg-info 2023-09-15T18:27:28,795 running install_scripts 2023-09-15T18:27:28,796 creating build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.0.data 2023-09-15T18:27:28,797 creating build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.0.data/scripts 2023-09-15T18:27:28,798 copying build/scripts-3.11/gimme -> build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.0.data/scripts 2023-09-15T18:27:28,800 copying build/scripts-3.11/coverage_table -> build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.0.data/scripts 2023-09-15T18:27:28,802 copying build/scripts-3.11/combine_peaks -> build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.0.data/scripts 2023-09-15T18:27:28,803 changing mode of build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.0.data/scripts/gimme to 755 2023-09-15T18:27:28,804 changing mode of build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.0.data/scripts/coverage_table to 755 2023-09-15T18:27:28,805 changing mode of build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.0.data/scripts/combine_peaks to 755 2023-09-15T18:27:28,862 creating build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.0.dist-info/WHEEL 2023-09-15T18:27:28,865 creating '/tmp/pip-wheel-3u8pssp5/gimmemotifs-0.17.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-15T18:27:28,867 adding 'data/__init__.py' 2023-09-15T18:27:28,869 adding 'data/test.develop.out' 2023-09-15T18:27:28,871 adding 'data/bg/hg18.MotifSampler.bg' 2023-09-15T18:27:28,873 adding 'data/bg/hg19.MotifSampler.bg' 2023-09-15T18:27:28,874 adding 'data/bg/hg38.MotifSampler.bg' 2023-09-15T18:27:28,876 adding 'data/bg/mm10.MotifSampler.bg' 2023-09-15T18:27:28,878 adding 'data/bg/mm9.MotifSampler.bg' 2023-09-15T18:27:28,879 adding 'data/bg/xenTro2.MotifSampler.bg' 2023-09-15T18:27:28,881 adding 'data/cfg/gimmemotifs.default.cfg' 2023-09-15T18:27:28,935 adding 'data/examples/Gm12878.CTCF.top500.w200.fa' 2023-09-15T18:27:28,937 adding 'data/examples/MA0099.3.jaspar' 2023-09-15T18:27:28,941 adding 'data/examples/TAp73alpha.bed' 2023-09-15T18:27:29,049 adding 'data/examples/TAp73alpha.fa' 2023-09-15T18:27:29,052 adding 'data/examples/example.pfm' 2023-09-15T18:27:29,054 adding 'data/examples/test.small.fa' 2023-09-15T18:27:29,097 adding 'data/motif_databases/CIS-BP.motif2factors.txt' 2023-09-15T18:27:29,886 adding 'data/motif_databases/CIS-BP.pfm' 2023-09-15T18:27:29,927 adding 'data/motif_databases/ENCODE.motif2factors.txt' 2023-09-15T18:27:30,150 adding 'data/motif_databases/ENCODE.pfm' 2023-09-15T18:27:30,162 adding 'data/motif_databases/HOCOMOCOv10_HUMAN.motif2factors.txt' 2023-09-15T18:27:30,254 adding 'data/motif_databases/HOCOMOCOv10_HUMAN.pfm' 2023-09-15T18:27:30,259 adding 'data/motif_databases/HOCOMOCOv10_MOUSE.motif2factors.txt' 2023-09-15T18:27:30,321 adding 'data/motif_databases/HOCOMOCOv10_MOUSE.pfm' 2023-09-15T18:27:30,326 adding 'data/motif_databases/HOCOMOCOv11_HUMAN.motif2factors.txt' 2023-09-15T18:27:30,363 adding 'data/motif_databases/HOCOMOCOv11_HUMAN.pfm' 2023-09-15T18:27:30,368 adding 'data/motif_databases/HOCOMOCOv11_MOUSE.motif2factors.txt' 2023-09-15T18:27:30,399 adding 'data/motif_databases/HOCOMOCOv11_MOUSE.pfm' 2023-09-15T18:27:30,405 adding 'data/motif_databases/HOMER.motif2factors.txt' 2023-09-15T18:27:30,444 adding 'data/motif_databases/HOMER.pfm' 2023-09-15T18:27:30,451 adding 'data/motif_databases/IMAGE.motif2factors.txt' 2023-09-15T18:27:30,621 adding 'data/motif_databases/IMAGE.pfm' 2023-09-15T18:27:30,634 adding 'data/motif_databases/JASPAR2018.motif2factors.txt' 2023-09-15T18:27:30,741 adding 'data/motif_databases/JASPAR2018.pfm' 2023-09-15T18:27:30,747 adding 'data/motif_databases/JASPAR2018_fungi.motif2factors.txt' 2023-09-15T18:27:30,757 adding 'data/motif_databases/JASPAR2018_fungi.pfm' 2023-09-15T18:27:30,758 adding 'data/motif_databases/JASPAR2018_insects.motif2factors.txt' 2023-09-15T18:27:30,764 adding 'data/motif_databases/JASPAR2018_insects.pfm' 2023-09-15T18:27:30,765 adding 'data/motif_databases/JASPAR2018_nematodes.motif2factors.txt' 2023-09-15T18:27:30,767 adding 'data/motif_databases/JASPAR2018_nematodes.pfm' 2023-09-15T18:27:30,770 adding 'data/motif_databases/JASPAR2018_plants.motif2factors.txt' 2023-09-15T18:27:30,810 adding 'data/motif_databases/JASPAR2018_plants.pfm' 2023-09-15T18:27:30,812 adding 'data/motif_databases/JASPAR2018_urochordates.motif2factors.txt' 2023-09-15T18:27:30,813 adding 'data/motif_databases/JASPAR2018_urochordates.pfm' 2023-09-15T18:27:30,817 adding 'data/motif_databases/JASPAR2018_vertebrates.motif2factors.txt' 2023-09-15T18:27:30,866 adding 'data/motif_databases/JASPAR2018_vertebrates.pfm' 2023-09-15T18:27:30,878 adding 'data/motif_databases/JASPAR2020.motif2factors.txt' 2023-09-15T18:27:31,044 adding 'data/motif_databases/JASPAR2020.pfm' 2023-09-15T18:27:31,051 adding 'data/motif_databases/JASPAR2020_fungi.motif2factors.txt' 2023-09-15T18:27:31,064 adding 'data/motif_databases/JASPAR2020_fungi.pfm' 2023-09-15T18:27:31,066 adding 'data/motif_databases/JASPAR2020_insects.motif2factors.txt' 2023-09-15T18:27:31,073 adding 'data/motif_databases/JASPAR2020_insects.pfm' 2023-09-15T18:27:31,075 adding 'data/motif_databases/JASPAR2020_nematodes.motif2factors.txt' 2023-09-15T18:27:31,078 adding 'data/motif_databases/JASPAR2020_nematodes.pfm' 2023-09-15T18:27:31,081 adding 'data/motif_databases/JASPAR2020_plants.motif2factors.txt' 2023-09-15T18:27:31,135 adding 'data/motif_databases/JASPAR2020_plants.pfm' 2023-09-15T18:27:31,138 adding 'data/motif_databases/JASPAR2020_urochordates.motif2factors.txt' 2023-09-15T18:27:31,139 adding 'data/motif_databases/JASPAR2020_urochordates.pfm' 2023-09-15T18:27:31,144 adding 'data/motif_databases/JASPAR2020_vertebrates.motif2factors.txt' 2023-09-15T18:27:31,233 adding 'data/motif_databases/JASPAR2020_vertebrates.pfm' 2023-09-15T18:27:31,253 adding 'data/motif_databases/JASPAR2022.motif2factors.txt' 2023-09-15T18:27:31,432 adding 'data/motif_databases/JASPAR2022.pfm' 2023-09-15T18:27:31,439 adding 'data/motif_databases/JASPAR2022_fungi.motif2factors.txt' 2023-09-15T18:27:31,450 adding 'data/motif_databases/JASPAR2022_fungi.pfm' 2023-09-15T18:27:31,452 adding 'data/motif_databases/JASPAR2022_insects.motif2factors.txt' 2023-09-15T18:27:31,459 adding 'data/motif_databases/JASPAR2022_insects.pfm' 2023-09-15T18:27:31,460 adding 'data/motif_databases/JASPAR2022_nematodes.motif2factors.txt' 2023-09-15T18:27:31,463 adding 'data/motif_databases/JASPAR2022_nematodes.pfm' 2023-09-15T18:27:31,470 adding 'data/motif_databases/JASPAR2022_plants.motif2factors.txt' 2023-09-15T18:27:31,533 adding 'data/motif_databases/JASPAR2022_plants.pfm' 2023-09-15T18:27:31,536 adding 'data/motif_databases/JASPAR2022_urochordates.motif2factors.txt' 2023-09-15T18:27:31,549 adding 'data/motif_databases/JASPAR2022_urochordates.pfm' 2023-09-15T18:27:31,557 adding 'data/motif_databases/JASPAR2022_vertebrates.motif2factors.txt' 2023-09-15T18:27:31,637 adding 'data/motif_databases/JASPAR2022_vertebrates.pfm' 2023-09-15T18:27:31,640 adding 'data/motif_databases/RSAT_insects.motif2factors.txt' 2023-09-15T18:27:31,664 adding 'data/motif_databases/RSAT_insects.pfm' 2023-09-15T18:27:31,666 adding 'data/motif_databases/RSAT_plants.motif2factors.txt' 2023-09-15T18:27:31,698 adding 'data/motif_databases/RSAT_plants.pfm' 2023-09-15T18:27:31,700 adding 'data/motif_databases/RSAT_vertebrates.motif2factors.txt' 2023-09-15T18:27:31,902 adding 'data/motif_databases/RSAT_vertebrates.pfm' 2023-09-15T18:27:31,912 adding 'data/motif_databases/SwissRegulon.motif2factors.txt' 2023-09-15T18:27:31,973 adding 'data/motif_databases/SwissRegulon.pfm' 2023-09-15T18:27:31,977 adding 'data/motif_databases/factorbook.motif2factors.txt' 2023-09-15T18:27:32,009 adding 'data/motif_databases/factorbook.pfm' 2023-09-15T18:27:32,042 adding 'data/motif_databases/gimme.invertebrate.v1.0.pwm' 2023-09-15T18:27:32,061 adding 'data/motif_databases/gimme.plant.v1.0.pwm' 2023-09-15T18:27:32,066 adding 'data/motif_databases/gimme.vertebrate.v3.1.factor2motifs.txt' 2023-09-15T18:27:32,070 adding 'data/motif_databases/gimme.vertebrate.v3.1.motif2factors.txt' 2023-09-15T18:27:32,175 adding 'data/motif_databases/gimme.vertebrate.v3.1.pwm' 2023-09-15T18:27:32,207 adding 'data/motif_databases/gimme.vertebrate.v5.0.motif2factors.txt' 2023-09-15T18:27:32,369 adding 'data/motif_databases/gimme.vertebrate.v5.0.pfm' 2023-09-15T18:27:32,378 adding 'data/score_dists/dic2_bg_mean_sd.txt' 2023-09-15T18:27:32,380 adding 'data/score_dists/dic2_mean_sd.txt' 2023-09-15T18:27:32,381 adding 'data/score_dists/total_wic_mean_score_dist.txt' 2023-09-15T18:27:32,384 adding 'data/templates/cluster_template.jinja.html' 2023-09-15T18:27:32,387 adding 'data/templates/report_template.jinja.html' 2023-09-15T18:27:32,389 adding 'data/templates/star.png' 2023-09-15T18:27:32,391 adding 'data/templates/star_silver.png' 2023-09-15T18:27:32,394 adding 'data/templates/table.tpl' 2023-09-15T18:27:32,397 adding 'data/templates/sortable/sortable-theme-slick.css' 2023-09-15T18:27:32,399 adding 'data/templates/sortable/sortable.min.js' 2023-09-15T18:27:32,402 adding 'gimmemotifs/__init__.py' 2023-09-15T18:27:32,404 adding 'gimmemotifs/_version.py' 2023-09-15T18:27:32,407 adding 'gimmemotifs/background.py' 2023-09-15T18:27:32,411 adding 'gimmemotifs/c_metrics.c' 2023-09-15T18:27:32,421 adding 'gimmemotifs/c_metrics.cpython-311-arm-linux-gnueabihf.so' 2023-09-15T18:27:32,425 adding 'gimmemotifs/cli.py' 2023-09-15T18:27:32,429 adding 'gimmemotifs/cluster.py' 2023-09-15T18:27:32,436 adding 'gimmemotifs/comparison.py' 2023-09-15T18:27:32,438 adding 'gimmemotifs/config.py' 2023-09-15T18:27:32,441 adding 'gimmemotifs/denovo.py' 2023-09-15T18:27:32,443 adding 'gimmemotifs/fasta.py' 2023-09-15T18:27:32,446 adding 'gimmemotifs/maelstrom.py' 2023-09-15T18:27:32,449 adding 'gimmemotifs/moap.py' 2023-09-15T18:27:32,452 adding 'gimmemotifs/orthologs.py' 2023-09-15T18:27:32,455 adding 'gimmemotifs/plot.py' 2023-09-15T18:27:32,457 adding 'gimmemotifs/prediction.py' 2023-09-15T18:27:32,458 adding 'gimmemotifs/preprocessing.py' 2023-09-15T18:27:32,460 adding 'gimmemotifs/rank.py' 2023-09-15T18:27:32,464 adding 'gimmemotifs/report.py' 2023-09-15T18:27:32,466 adding 'gimmemotifs/rocmetrics.py' 2023-09-15T18:27:32,471 adding 'gimmemotifs/scanner.py' 2023-09-15T18:27:32,472 adding 'gimmemotifs/shutils.py' 2023-09-15T18:27:32,474 adding 'gimmemotifs/stats.py' 2023-09-15T18:27:32,477 adding 'gimmemotifs/utils.fix.py' 2023-09-15T18:27:32,481 adding 'gimmemotifs/utils.py' 2023-09-15T18:27:32,482 adding 'gimmemotifs/validation.py' 2023-09-15T18:27:32,484 adding 'gimmemotifs/commands/__init__.py' 2023-09-15T18:27:32,485 adding 'gimmemotifs/commands/background.py' 2023-09-15T18:27:32,486 adding 'gimmemotifs/commands/cluster.py' 2023-09-15T18:27:32,488 adding 'gimmemotifs/commands/diff.py' 2023-09-15T18:27:32,489 adding 'gimmemotifs/commands/location.py' 2023-09-15T18:27:32,490 adding 'gimmemotifs/commands/logo.py' 2023-09-15T18:27:32,491 adding 'gimmemotifs/commands/maelstrom.py' 2023-09-15T18:27:32,492 adding 'gimmemotifs/commands/match.py' 2023-09-15T18:27:32,494 adding 'gimmemotifs/commands/motif2factors.py' 2023-09-15T18:27:32,495 adding 'gimmemotifs/commands/motifs.py' 2023-09-15T18:27:32,497 adding 'gimmemotifs/commands/pfmscan.py' 2023-09-15T18:27:32,498 adding 'gimmemotifs/commands/prediction.py' 2023-09-15T18:27:32,499 adding 'gimmemotifs/commands/threshold.py' 2023-09-15T18:27:32,502 adding 'gimmemotifs/db/__init__.py' 2023-09-15T18:27:32,516 adding 'gimmemotifs/included_tools/AMD.bin' 2023-09-15T18:27:32,526 adding 'gimmemotifs/included_tools/BioProspector' 2023-09-15T18:27:32,771 adding 'gimmemotifs/included_tools/CreateBackgroundModel' 2023-09-15T18:27:32,792 adding 'gimmemotifs/included_tools/MDmodule' 2023-09-15T18:27:33,072 adding 'gimmemotifs/included_tools/MotifSampler' 2023-09-15T18:27:33,086 adding 'gimmemotifs/included_tools/__init__.py' 2023-09-15T18:27:33,151 adding 'gimmemotifs/included_tools/ameme' 2023-09-15T18:27:33,159 adding 'gimmemotifs/included_tools/clusterwd' 2023-09-15T18:27:33,164 adding 'gimmemotifs/included_tools/posmo' 2023-09-15T18:27:33,166 adding 'gimmemotifs/included_tools/ChIPMunk/ChIPMunk.sh' 2023-09-15T18:27:33,716 adding 'gimmemotifs/included_tools/ChIPMunk/chipmunk.jar' 2023-09-15T18:27:33,770 adding 'gimmemotifs/included_tools/HMS/hms' 2023-09-15T18:27:33,772 adding 'gimmemotifs/included_tools/HMS/theta0.txt' 2023-09-15T18:27:33,773 adding 'gimmemotifs/included_tools/HMS/theta1.txt' 2023-09-15T18:27:33,774 adding 'gimmemotifs/included_tools/HMS/theta2.txt' 2023-09-15T18:27:33,775 adding 'gimmemotifs/included_tools/HMS/theta3.txt' 2023-09-15T18:27:33,781 adding 'gimmemotifs/motif/__init__.py' 2023-09-15T18:27:33,783 adding 'gimmemotifs/motif/_comparison.py' 2023-09-15T18:27:33,784 adding 'gimmemotifs/motif/_plotting.py' 2023-09-15T18:27:33,786 adding 'gimmemotifs/motif/_scanning.py' 2023-09-15T18:27:33,788 adding 'gimmemotifs/tools/__init__.py' 2023-09-15T18:27:33,789 adding 'gimmemotifs/tools/amd.py' 2023-09-15T18:27:33,791 adding 'gimmemotifs/tools/bioprospector.py' 2023-09-15T18:27:33,792 adding 'gimmemotifs/tools/chipmunk.py' 2023-09-15T18:27:33,794 adding 'gimmemotifs/tools/dinamo.py' 2023-09-15T18:27:33,795 adding 'gimmemotifs/tools/dreme.py' 2023-09-15T18:27:33,796 adding 'gimmemotifs/tools/gadem.py' 2023-09-15T18:27:33,798 adding 'gimmemotifs/tools/hms.py' 2023-09-15T18:27:33,799 adding 'gimmemotifs/tools/homer.py' 2023-09-15T18:27:33,801 adding 'gimmemotifs/tools/improbizer.py' 2023-09-15T18:27:33,802 adding 'gimmemotifs/tools/jaspar.py' 2023-09-15T18:27:33,803 adding 'gimmemotifs/tools/mdmodule.py' 2023-09-15T18:27:33,805 adding 'gimmemotifs/tools/meme.py' 2023-09-15T18:27:33,806 adding 'gimmemotifs/tools/memew.py' 2023-09-15T18:27:33,808 adding 'gimmemotifs/tools/motifprogram.py' 2023-09-15T18:27:33,809 adding 'gimmemotifs/tools/motifsampler.py' 2023-09-15T18:27:33,811 adding 'gimmemotifs/tools/posmo.py' 2023-09-15T18:27:33,812 adding 'gimmemotifs/tools/prosampler.py' 2023-09-15T18:27:33,813 adding 'gimmemotifs/tools/rpmcmc.py' 2023-09-15T18:27:33,815 adding 'gimmemotifs/tools/trawler.py' 2023-09-15T18:27:33,816 adding 'gimmemotifs/tools/weeder.py' 2023-09-15T18:27:33,817 adding 'gimmemotifs/tools/xxmotif.py' 2023-09-15T18:27:33,819 adding 'gimmemotifs/tools/yamda.py' 2023-09-15T18:27:33,821 adding 'gimmemotifs-0.17.0.data/scripts/combine_peaks' 2023-09-15T18:27:33,822 adding 'gimmemotifs-0.17.0.data/scripts/coverage_table' 2023-09-15T18:27:33,824 adding 'gimmemotifs-0.17.0.data/scripts/gimme' 2023-09-15T18:27:33,826 adding 'gimmemotifs-0.17.0.dist-info/COPYING' 2023-09-15T18:27:33,827 adding 'gimmemotifs-0.17.0.dist-info/METADATA' 2023-09-15T18:27:33,828 adding 'gimmemotifs-0.17.0.dist-info/WHEEL' 2023-09-15T18:27:33,829 adding 'gimmemotifs-0.17.0.dist-info/top_level.txt' 2023-09-15T18:27:33,832 adding 'gimmemotifs-0.17.0.dist-info/RECORD' 2023-09-15T18:27:33,944 removing build/bdist.linux-armv7l/wheel 2023-09-15T18:27:34,140 Building wheel for gimmemotifs (setup.py): finished with status 'done' 2023-09-15T18:27:34,267 Created wheel for gimmemotifs: filename=gimmemotifs-0.17.0-cp311-cp311-linux_armv7l.whl size=10663469 sha256=fd1c5ae6b52a90bc4ae4974421b4f703a40460b7a65e50955ef2afd64a8f3f71 2023-09-15T18:27:34,268 Stored in directory: /tmp/pip-ephem-wheel-cache-_ydai0ch/wheels/66/0c/db/53310f4ead01c222fab99860f8e6d6fd2b1cca20017efe7d18 2023-09-15T18:27:34,288 Successfully built gimmemotifs 2023-09-15T18:27:34,561 Removed build tracker: '/tmp/pip-build-tracker-x8c40kgy'