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https://pypi.org/simple/glycopeptidepy/ 2023-09-16T00:13:29,918 Given no hashes to check 1 links for project 'glycopeptidepy': discarding no candidates 2023-09-16T00:13:29,936 Collecting glycopeptidepy==0.0.15 2023-09-16T00:13:29,939 Created temporary directory: /tmp/pip-unpack-cn6r_evi 2023-09-16T00:13:30,498 Downloading glycopeptidepy-0.0.15.tar.gz (1.3 MB) 2023-09-16T00:13:31,491 Added glycopeptidepy==0.0.15 from https://files.pythonhosted.org/packages/52/c8/dff46985a9294d7cba7094ea5916ba3589996c635528547d744955219fc3/glycopeptidepy-0.0.15.tar.gz to build tracker '/tmp/pip-build-tracker-v43u_cy5' 2023-09-16T00:13:31,496 Created temporary directory: /tmp/pip-build-env-02t356on 2023-09-16T00:13:31,500 Installing build dependencies: started 2023-09-16T00:13:31,502 Running command pip subprocess to install build dependencies 2023-09-16T00:13:32,648 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-16T00:13:33,141 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-16T00:13:42,671 Collecting setuptools 2023-09-16T00:13:42,672 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-16T00:13:42,678 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-16T00:13:51,489 Collecting wheel 2023-09-16T00:13:58,774 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-16T00:14:00,043 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/cython/ 2023-09-16T00:14:08,833 Collecting Cython 2023-09-16T00:14:08,833 Obtaining dependency information for Cython from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata 2023-09-16T00:14:08,839 Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-16T00:14:09,200 Collecting glypy 2023-09-16T00:14:09,242 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/glypy/glypy-1.0.3-cp311-cp311-linux_armv7l.whl 2023-09-16T00:14:14,765 Downloading https://www.piwheels.org/simple/glypy/glypy-1.0.3-cp311-cp311-linux_armv7l.whl (1.7 MB) 2023-09-16T00:14:14,944 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 10.2 MB/s eta 0:00:00 2023-09-16T00:14:23,511 Collecting hjson (from glypy) 2023-09-16T00:14:23,726 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/hjson/hjson-3.1.0-py3-none-any.whl 2023-09-16T00:14:32,636 Downloading https://www.piwheels.org/simple/hjson/hjson-3.1.0-py3-none-any.whl (54 kB) 2023-09-16T00:14:32,817 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.0/54.0 kB 269.2 kB/s eta 0:00:00 2023-09-16T00:14:32,965 Collecting six (from glypy) 2023-09-16T00:14:32,987 Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB) 2023-09-16T00:14:33,019 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-16T00:14:33,055 Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB) 2023-09-16T00:14:35,625 Installing collected packages: hjson, wheel, six, setuptools, Cython, glypy 2023-09-16T00:14:35,866 Creating /tmp/pip-build-env-02t356on/overlay/local/bin 2023-09-16T00:14:35,868 changing mode of /tmp/pip-build-env-02t356on/overlay/local/bin/hjson to 755 2023-09-16T00:14:36,103 changing mode of /tmp/pip-build-env-02t356on/overlay/local/bin/wheel to 755 2023-09-16T00:14:41,208 changing mode of /tmp/pip-build-env-02t356on/overlay/local/bin/cygdb to 755 2023-09-16T00:14:41,211 changing mode of /tmp/pip-build-env-02t356on/overlay/local/bin/cython to 755 2023-09-16T00:14:41,213 changing mode of /tmp/pip-build-env-02t356on/overlay/local/bin/cythonize to 755 2023-09-16T00:14:42,567 Successfully installed Cython-3.0.2 glypy-1.0.3 hjson-3.1.0 setuptools-68.2.2 six-1.16.0 wheel-0.41.2 2023-09-16T00:14:43,211 Installing build dependencies: finished with status 'done' 2023-09-16T00:14:43,224 Getting requirements to build wheel: started 2023-09-16T00:14:43,226 Running command Getting requirements to build wheel 2023-09-16T00:14:47,942 /tmp/pip-build-env-02t356on/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-y9pv9_m_/glycopeptidepy_d2e46bdbcfd94d55a6a698cd2b13da5d/glycopeptidepy/_c/algorithm.pyx 2023-09-16T00:14:47,942 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-16T00:14:49,192 /tmp/pip-build-env-02t356on/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-y9pv9_m_/glycopeptidepy_d2e46bdbcfd94d55a6a698cd2b13da5d/glycopeptidepy/_c/collectiontools.pxd 2023-09-16T00:14:49,192 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-16T00:14:50,970 /tmp/pip-build-env-02t356on/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-y9pv9_m_/glycopeptidepy_d2e46bdbcfd94d55a6a698cd2b13da5d/glycopeptidepy/_c/count_table.pxd 2023-09-16T00:14:50,971 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-16T00:14:52,445 warning: glycopeptidepy/_c/count_table.pyx:15:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-16T00:14:52,463 warning: glycopeptidepy/_c/count_table.pyx:102:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-16T00:14:52,483 warning: glycopeptidepy/_c/count_table.pyx:184:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-16T00:14:52,485 warning: glycopeptidepy/_c/count_table.pyx:195:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-16T00:14:52,661 Error compiling Cython file: 2023-09-16T00:14:52,661 ------------------------------------------------------------ 2023-09-16T00:14:52,661 ... 2023-09-16T00:14:52,662 pytable[int(12)] = 11 2023-09-16T00:14:52,662 pytable[255.2] = 99 2023-09-16T00:14:52,663 assert len(pytable) == 2 2023-09-16T00:14:52,663 del pytable 2023-09-16T00:14:52,664 pytable = CountTable._create() 2023-09-16T00:14:52,664 print pytable 2023-09-16T00:14:52,665 ^ 2023-09-16T00:14:52,665 ------------------------------------------------------------ 2023-09-16T00:14:52,666 glycopeptidepy/_c/count_table.pyx:967:10: Syntax error in simple statement list 2023-09-16T00:14:52,745 Compiling glycopeptidepy/_c/collectiontools.pyx because it changed. 2023-09-16T00:14:52,745 Compiling glycopeptidepy/_c/count_table.pyx because it changed. 2023-09-16T00:14:52,746 Compiling glycopeptidepy/_c/parser.pyx because it changed. 2023-09-16T00:14:52,746 Compiling glycopeptidepy/_c/structure/base.pyx because it changed. 2023-09-16T00:14:52,747 Compiling glycopeptidepy/_c/structure/fragment.pyx because it changed. 2023-09-16T00:14:52,747 Compiling glycopeptidepy/_c/structure/constants.pyx because it changed. 2023-09-16T00:14:52,748 Compiling glycopeptidepy/_c/structure/glycan.pyx because it changed. 2023-09-16T00:14:52,748 Compiling glycopeptidepy/_c/structure/sequence_methods.pyx because it changed. 2023-09-16T00:14:52,749 Compiling glycopeptidepy/_c/structure/modification/rule.pyx because it changed. 2023-09-16T00:14:52,750 Compiling glycopeptidepy/_c/structure/modification/modification.pyx because it changed. 2023-09-16T00:14:52,750 Compiling glycopeptidepy/_c/structure/modification/source.pyx because it changed. 2023-09-16T00:14:52,751 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it changed. 2023-09-16T00:14:52,751 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it changed. 2023-09-16T00:14:52,752 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it changed. 2023-09-16T00:14:52,753 Compiling glycopeptidepy/_c/algorithm.pyx because it changed. 2023-09-16T00:14:52,753 [ 1/15] Cythonizing glycopeptidepy/_c/algorithm.pyx 2023-09-16T00:14:52,754 [ 2/15] Cythonizing glycopeptidepy/_c/collectiontools.pyx 2023-09-16T00:14:52,754 [ 3/15] Cythonizing glycopeptidepy/_c/count_table.pyx 2023-09-16T00:14:52,755 running egg_info 2023-09-16T00:14:52,755 writing glycopeptidepy.egg-info/PKG-INFO 2023-09-16T00:14:52,757 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2023-09-16T00:14:52,759 writing requirements to glycopeptidepy.egg-info/requires.txt 2023-09-16T00:14:52,760 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2023-09-16T00:14:52,797 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-16T00:14:52,805 reading manifest template 'MANIFEST.in' 2023-09-16T00:14:52,806 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-16T00:14:52,807 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-16T00:14:52,972 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-16T00:14:52,975 *************************************************************************** 2023-09-16T00:14:52,975 WARNING: The C extension could not be compiled, speedups are not enabled. 2023-09-16T00:14:52,976 Plain-Python build succeeded. 2023-09-16T00:14:52,977 *************************************************************************** 2023-09-16T00:14:53,241 Getting requirements to build wheel: finished with status 'done' 2023-09-16T00:14:53,250 Created temporary directory: /tmp/pip-modern-metadata-k21zu8v9 2023-09-16T00:14:53,252 Preparing metadata (pyproject.toml): started 2023-09-16T00:14:53,253 Running command Preparing metadata (pyproject.toml) 2023-09-16T00:14:57,097 /tmp/pip-build-env-02t356on/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-y9pv9_m_/glycopeptidepy_d2e46bdbcfd94d55a6a698cd2b13da5d/glycopeptidepy/_c/count_table.pxd 2023-09-16T00:14:57,097 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-16T00:14:58,626 warning: glycopeptidepy/_c/count_table.pyx:15:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-16T00:14:58,644 warning: glycopeptidepy/_c/count_table.pyx:102:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-16T00:14:58,668 warning: glycopeptidepy/_c/count_table.pyx:184:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-16T00:14:58,670 warning: glycopeptidepy/_c/count_table.pyx:195:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-16T00:14:58,848 Error compiling Cython file: 2023-09-16T00:14:58,848 ------------------------------------------------------------ 2023-09-16T00:14:58,849 ... 2023-09-16T00:14:58,849 pytable[int(12)] = 11 2023-09-16T00:14:58,850 pytable[255.2] = 99 2023-09-16T00:14:58,850 assert len(pytable) == 2 2023-09-16T00:14:58,851 del pytable 2023-09-16T00:14:58,851 pytable = CountTable._create() 2023-09-16T00:14:58,852 print pytable 2023-09-16T00:14:58,853 ^ 2023-09-16T00:14:58,853 ------------------------------------------------------------ 2023-09-16T00:14:58,854 glycopeptidepy/_c/count_table.pyx:967:10: Syntax error in simple statement list 2023-09-16T00:14:58,902 Compiling glycopeptidepy/_c/count_table.pyx because it changed. 2023-09-16T00:14:58,902 Compiling glycopeptidepy/_c/parser.pyx because it changed. 2023-09-16T00:14:58,903 Compiling glycopeptidepy/_c/structure/base.pyx because it changed. 2023-09-16T00:14:58,904 Compiling glycopeptidepy/_c/structure/fragment.pyx because it changed. 2023-09-16T00:14:58,904 Compiling glycopeptidepy/_c/structure/constants.pyx because it changed. 2023-09-16T00:14:58,905 Compiling glycopeptidepy/_c/structure/glycan.pyx because it changed. 2023-09-16T00:14:58,905 Compiling glycopeptidepy/_c/structure/sequence_methods.pyx because it changed. 2023-09-16T00:14:58,906 Compiling glycopeptidepy/_c/structure/modification/rule.pyx because it changed. 2023-09-16T00:14:58,907 Compiling glycopeptidepy/_c/structure/modification/modification.pyx because it changed. 2023-09-16T00:14:58,907 Compiling glycopeptidepy/_c/structure/modification/source.pyx because it changed. 2023-09-16T00:14:58,908 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it changed. 2023-09-16T00:14:58,908 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it changed. 2023-09-16T00:14:58,909 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it changed. 2023-09-16T00:14:58,910 [ 1/13] Cythonizing glycopeptidepy/_c/count_table.pyx 2023-09-16T00:14:58,910 running dist_info 2023-09-16T00:14:58,923 creating /tmp/pip-modern-metadata-k21zu8v9/glycopeptidepy.egg-info 2023-09-16T00:14:58,928 writing /tmp/pip-modern-metadata-k21zu8v9/glycopeptidepy.egg-info/PKG-INFO 2023-09-16T00:14:58,932 writing dependency_links to /tmp/pip-modern-metadata-k21zu8v9/glycopeptidepy.egg-info/dependency_links.txt 2023-09-16T00:14:58,934 writing requirements to /tmp/pip-modern-metadata-k21zu8v9/glycopeptidepy.egg-info/requires.txt 2023-09-16T00:14:58,935 writing top-level names to /tmp/pip-modern-metadata-k21zu8v9/glycopeptidepy.egg-info/top_level.txt 2023-09-16T00:14:58,936 writing manifest file '/tmp/pip-modern-metadata-k21zu8v9/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-16T00:14:58,965 reading manifest file '/tmp/pip-modern-metadata-k21zu8v9/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-16T00:14:58,967 reading manifest template 'MANIFEST.in' 2023-09-16T00:14:58,968 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-16T00:14:58,968 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-16T00:14:59,140 writing manifest file '/tmp/pip-modern-metadata-k21zu8v9/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-16T00:14:59,141 creating '/tmp/pip-modern-metadata-k21zu8v9/glycopeptidepy-0.0.15.dist-info' 2023-09-16T00:14:59,222 *************************************************************************** 2023-09-16T00:14:59,223 WARNING: The C extension could not be compiled, speedups are not enabled. 2023-09-16T00:14:59,224 Plain-Python build succeeded. 2023-09-16T00:14:59,225 *************************************************************************** 2023-09-16T00:14:59,494 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-16T00:14:59,498 Source in /tmp/pip-wheel-y9pv9_m_/glycopeptidepy_d2e46bdbcfd94d55a6a698cd2b13da5d has version 0.0.15, which satisfies requirement glycopeptidepy==0.0.15 from https://files.pythonhosted.org/packages/52/c8/dff46985a9294d7cba7094ea5916ba3589996c635528547d744955219fc3/glycopeptidepy-0.0.15.tar.gz 2023-09-16T00:14:59,499 Removed glycopeptidepy==0.0.15 from https://files.pythonhosted.org/packages/52/c8/dff46985a9294d7cba7094ea5916ba3589996c635528547d744955219fc3/glycopeptidepy-0.0.15.tar.gz from build tracker '/tmp/pip-build-tracker-v43u_cy5' 2023-09-16T00:14:59,503 Created temporary directory: /tmp/pip-unpack-kgtqqe19 2023-09-16T00:14:59,504 Created temporary directory: /tmp/pip-unpack-e2_6zvuv 2023-09-16T00:14:59,513 Building wheels for collected packages: glycopeptidepy 2023-09-16T00:14:59,518 Created temporary directory: /tmp/pip-wheel-ec20cpnw 2023-09-16T00:14:59,518 Destination directory: /tmp/pip-wheel-ec20cpnw 2023-09-16T00:14:59,521 Building wheel for glycopeptidepy (pyproject.toml): started 2023-09-16T00:14:59,522 Running command Building wheel for glycopeptidepy (pyproject.toml) 2023-09-16T00:15:03,366 /tmp/pip-build-env-02t356on/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-y9pv9_m_/glycopeptidepy_d2e46bdbcfd94d55a6a698cd2b13da5d/glycopeptidepy/_c/count_table.pxd 2023-09-16T00:15:03,367 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-16T00:15:04,896 warning: glycopeptidepy/_c/count_table.pyx:15:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-16T00:15:04,914 warning: glycopeptidepy/_c/count_table.pyx:102:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-16T00:15:04,938 warning: glycopeptidepy/_c/count_table.pyx:184:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-16T00:15:04,940 warning: glycopeptidepy/_c/count_table.pyx:195:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-16T00:15:05,127 Error compiling Cython file: 2023-09-16T00:15:05,128 ------------------------------------------------------------ 2023-09-16T00:15:05,128 ... 2023-09-16T00:15:05,129 pytable[int(12)] = 11 2023-09-16T00:15:05,129 pytable[255.2] = 99 2023-09-16T00:15:05,130 assert len(pytable) == 2 2023-09-16T00:15:05,130 del pytable 2023-09-16T00:15:05,131 pytable = CountTable._create() 2023-09-16T00:15:05,131 print pytable 2023-09-16T00:15:05,132 ^ 2023-09-16T00:15:05,132 ------------------------------------------------------------ 2023-09-16T00:15:05,133 glycopeptidepy/_c/count_table.pyx:967:10: Syntax error in simple statement list 2023-09-16T00:15:05,225 Compiling glycopeptidepy/_c/count_table.pyx because it changed. 2023-09-16T00:15:05,226 Compiling glycopeptidepy/_c/parser.pyx because it changed. 2023-09-16T00:15:05,226 Compiling glycopeptidepy/_c/structure/base.pyx because it changed. 2023-09-16T00:15:05,227 Compiling glycopeptidepy/_c/structure/fragment.pyx because it changed. 2023-09-16T00:15:05,227 Compiling glycopeptidepy/_c/structure/constants.pyx because it changed. 2023-09-16T00:15:05,228 Compiling glycopeptidepy/_c/structure/glycan.pyx because it changed. 2023-09-16T00:15:05,228 Compiling glycopeptidepy/_c/structure/sequence_methods.pyx because it changed. 2023-09-16T00:15:05,229 Compiling glycopeptidepy/_c/structure/modification/rule.pyx because it changed. 2023-09-16T00:15:05,230 Compiling glycopeptidepy/_c/structure/modification/modification.pyx because it changed. 2023-09-16T00:15:05,230 Compiling glycopeptidepy/_c/structure/modification/source.pyx because it changed. 2023-09-16T00:15:05,231 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it changed. 2023-09-16T00:15:05,231 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it changed. 2023-09-16T00:15:05,232 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it changed. 2023-09-16T00:15:05,233 [ 1/13] Cythonizing glycopeptidepy/_c/count_table.pyx 2023-09-16T00:15:05,234 running bdist_wheel 2023-09-16T00:15:05,264 running build 2023-09-16T00:15:05,264 running build_py 2023-09-16T00:15:05,273 creating build 2023-09-16T00:15:05,273 creating build/lib 2023-09-16T00:15:05,274 creating build/lib/glycopeptidepy 2023-09-16T00:15:05,275 copying glycopeptidepy/__init__.py -> build/lib/glycopeptidepy 2023-09-16T00:15:05,277 copying glycopeptidepy/version.py -> build/lib/glycopeptidepy 2023-09-16T00:15:05,279 copying glycopeptidepy/enzyme.py -> build/lib/glycopeptidepy 2023-09-16T00:15:05,281 copying glycopeptidepy/algorithm.py -> build/lib/glycopeptidepy 2023-09-16T00:15:05,284 creating build/lib/glycopeptidepy/test 2023-09-16T00:15:05,285 copying glycopeptidepy/test/test_enzyme.py -> build/lib/glycopeptidepy/test 2023-09-16T00:15:05,287 copying glycopeptidepy/test/test_uniprot.py -> build/lib/glycopeptidepy/test 2023-09-16T00:15:05,289 copying glycopeptidepy/test/test_sequence_composition.py -> build/lib/glycopeptidepy/test 2023-09-16T00:15:05,291 copying glycopeptidepy/test/test_fragmentation_strategy.py -> build/lib/glycopeptidepy/test 2023-09-16T00:15:05,293 copying glycopeptidepy/test/test_residue.py -> build/lib/glycopeptidepy/test 2023-09-16T00:15:05,294 copying glycopeptidepy/test/test_modification.py -> build/lib/glycopeptidepy/test 2023-09-16T00:15:05,297 copying glycopeptidepy/test/common.py -> build/lib/glycopeptidepy/test 2023-09-16T00:15:05,298 copying glycopeptidepy/test/test_fragment.py -> build/lib/glycopeptidepy/test 2023-09-16T00:15:05,300 copying glycopeptidepy/test/test_intervals.py -> build/lib/glycopeptidepy/test 2023-09-16T00:15:05,302 copying glycopeptidepy/test/__init__.py -> build/lib/glycopeptidepy/test 2023-09-16T00:15:05,303 copying glycopeptidepy/test/test_utils.py -> build/lib/glycopeptidepy/test 2023-09-16T00:15:05,305 copying glycopeptidepy/test/test_algorithms.py -> build/lib/glycopeptidepy/test 2023-09-16T00:15:05,307 copying glycopeptidepy/test/test_fasta.py -> build/lib/glycopeptidepy/test 2023-09-16T00:15:05,308 copying glycopeptidepy/test/test_sequence.py -> build/lib/glycopeptidepy/test 2023-09-16T00:15:05,311 creating build/lib/glycopeptidepy/_c 2023-09-16T00:15:05,312 copying glycopeptidepy/_c/cythonize.py -> build/lib/glycopeptidepy/_c 2023-09-16T00:15:05,314 copying glycopeptidepy/_c/__init__.py -> build/lib/glycopeptidepy/_c 2023-09-16T00:15:05,316 creating build/lib/glycopeptidepy/utils 2023-09-16T00:15:05,316 copying glycopeptidepy/utils/collectiontools.py -> build/lib/glycopeptidepy/utils 2023-09-16T00:15:05,318 copying glycopeptidepy/utils/sequence_tree.py -> build/lib/glycopeptidepy/utils 2023-09-16T00:15:05,320 copying glycopeptidepy/utils/__init__.py -> build/lib/glycopeptidepy/utils 2023-09-16T00:15:05,322 copying glycopeptidepy/utils/iterators.py -> build/lib/glycopeptidepy/utils 2023-09-16T00:15:05,323 copying glycopeptidepy/utils/intervals.py -> build/lib/glycopeptidepy/utils 2023-09-16T00:15:05,326 copying glycopeptidepy/utils/memoize.py -> build/lib/glycopeptidepy/utils 2023-09-16T00:15:05,328 creating build/lib/glycopeptidepy/io 2023-09-16T00:15:05,329 copying glycopeptidepy/io/mzid.py -> build/lib/glycopeptidepy/io 2023-09-16T00:15:05,331 copying glycopeptidepy/io/uniprot.py -> build/lib/glycopeptidepy/io 2023-09-16T00:15:05,334 copying glycopeptidepy/io/annotation.py -> build/lib/glycopeptidepy/io 2023-09-16T00:15:05,336 copying glycopeptidepy/io/fasta.py -> build/lib/glycopeptidepy/io 2023-09-16T00:15:05,339 copying glycopeptidepy/io/__init__.py -> build/lib/glycopeptidepy/io 2023-09-16T00:15:05,340 copying glycopeptidepy/io/utils.py -> build/lib/glycopeptidepy/io 2023-09-16T00:15:05,342 copying glycopeptidepy/io/nextprot.py -> build/lib/glycopeptidepy/io 2023-09-16T00:15:05,344 creating build/lib/glycopeptidepy/structure 2023-09-16T00:15:05,345 copying glycopeptidepy/structure/glycan.py -> build/lib/glycopeptidepy/structure 2023-09-16T00:15:05,348 copying glycopeptidepy/structure/fragment.py -> build/lib/glycopeptidepy/structure 2023-09-16T00:15:05,350 copying glycopeptidepy/structure/terminal_group.py -> build/lib/glycopeptidepy/structure 2023-09-16T00:15:05,352 copying glycopeptidepy/structure/base.py -> build/lib/glycopeptidepy/structure 2023-09-16T00:15:05,354 copying glycopeptidepy/structure/composition.py -> build/lib/glycopeptidepy/structure 2023-09-16T00:15:05,355 copying glycopeptidepy/structure/parser.py -> build/lib/glycopeptidepy/structure 2023-09-16T00:15:05,357 copying glycopeptidepy/structure/__init__.py -> build/lib/glycopeptidepy/structure 2023-09-16T00:15:05,359 copying glycopeptidepy/structure/residue.py -> build/lib/glycopeptidepy/structure 2023-09-16T00:15:05,361 copying glycopeptidepy/structure/constants.py -> build/lib/glycopeptidepy/structure 2023-09-16T00:15:05,363 copying glycopeptidepy/structure/sequence_composition.py -> build/lib/glycopeptidepy/structure 2023-09-16T00:15:05,366 creating build/lib/glycopeptidepy/_c/structure 2023-09-16T00:15:05,367 copying glycopeptidepy/_c/structure/__init__.py -> build/lib/glycopeptidepy/_c/structure 2023-09-16T00:15:05,369 creating build/lib/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:05,370 copying glycopeptidepy/_c/structure/modification/__init__.py -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:05,372 creating build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:05,373 copying glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:05,375 creating build/lib/glycopeptidepy/io/cv 2023-09-16T00:15:05,375 copying glycopeptidepy/io/cv/uniprot_ptm.py -> build/lib/glycopeptidepy/io/cv 2023-09-16T00:15:05,377 copying glycopeptidepy/io/cv/__init__.py -> build/lib/glycopeptidepy/io/cv 2023-09-16T00:15:05,379 copying glycopeptidepy/io/cv/term.py -> build/lib/glycopeptidepy/io/cv 2023-09-16T00:15:05,381 copying glycopeptidepy/io/cv/peff.py -> build/lib/glycopeptidepy/io/cv 2023-09-16T00:15:05,383 creating build/lib/glycopeptidepy/structure/sequence 2023-09-16T00:15:05,384 copying glycopeptidepy/structure/sequence/mutable_sequence.py -> build/lib/glycopeptidepy/structure/sequence 2023-09-16T00:15:05,386 copying glycopeptidepy/structure/sequence/base.py -> build/lib/glycopeptidepy/structure/sequence 2023-09-16T00:15:05,388 copying glycopeptidepy/structure/sequence/implementation.py -> build/lib/glycopeptidepy/structure/sequence 2023-09-16T00:15:05,391 copying glycopeptidepy/structure/sequence/__init__.py -> build/lib/glycopeptidepy/structure/sequence 2023-09-16T00:15:05,392 copying glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/lib/glycopeptidepy/structure/sequence 2023-09-16T00:15:05,395 creating build/lib/glycopeptidepy/structure/modification 2023-09-16T00:15:05,396 copying glycopeptidepy/structure/modification/source.py -> build/lib/glycopeptidepy/structure/modification 2023-09-16T00:15:05,398 copying glycopeptidepy/structure/modification/modification.py -> build/lib/glycopeptidepy/structure/modification 2023-09-16T00:15:05,401 copying glycopeptidepy/structure/modification/__init__.py -> build/lib/glycopeptidepy/structure/modification 2023-09-16T00:15:05,402 copying glycopeptidepy/structure/modification/target.py -> build/lib/glycopeptidepy/structure/modification 2023-09-16T00:15:05,404 copying glycopeptidepy/structure/modification/utils.py -> build/lib/glycopeptidepy/structure/modification 2023-09-16T00:15:05,406 copying glycopeptidepy/structure/modification/glycosylation.py -> build/lib/glycopeptidepy/structure/modification 2023-09-16T00:15:05,408 copying glycopeptidepy/structure/modification/rule.py -> build/lib/glycopeptidepy/structure/modification 2023-09-16T00:15:05,411 copying glycopeptidepy/structure/modification/descriptors.py -> build/lib/glycopeptidepy/structure/modification 2023-09-16T00:15:05,413 creating build/lib/glycopeptidepy/structure/fragmentation_strategy 2023-09-16T00:15:05,414 copying glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/lib/glycopeptidepy/structure/fragmentation_strategy 2023-09-16T00:15:05,418 copying glycopeptidepy/structure/fragmentation_strategy/base.py -> build/lib/glycopeptidepy/structure/fragmentation_strategy 2023-09-16T00:15:05,419 copying glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/lib/glycopeptidepy/structure/fragmentation_strategy 2023-09-16T00:15:05,422 copying glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/lib/glycopeptidepy/structure/fragmentation_strategy 2023-09-16T00:15:05,424 creating build/lib/glycopeptidepy/structure/modification/data 2023-09-16T00:15:05,425 copying glycopeptidepy/structure/modification/data/unimod.py -> build/lib/glycopeptidepy/structure/modification/data 2023-09-16T00:15:05,428 copying glycopeptidepy/structure/modification/data/patch_unimod.py -> build/lib/glycopeptidepy/structure/modification/data 2023-09-16T00:15:05,430 copying glycopeptidepy/structure/modification/data/__init__.py -> build/lib/glycopeptidepy/structure/modification/data 2023-09-16T00:15:05,431 running egg_info 2023-09-16T00:15:05,436 writing glycopeptidepy.egg-info/PKG-INFO 2023-09-16T00:15:05,439 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2023-09-16T00:15:05,441 writing requirements to glycopeptidepy.egg-info/requires.txt 2023-09-16T00:15:05,442 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2023-09-16T00:15:05,458 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-16T00:15:05,463 reading manifest template 'MANIFEST.in' 2023-09-16T00:15:05,463 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-16T00:15:05,464 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-16T00:15:05,634 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-16T00:15:05,642 copying glycopeptidepy/_c/algorithm.c -> build/lib/glycopeptidepy/_c 2023-09-16T00:15:05,657 copying glycopeptidepy/_c/algorithm.pyx -> build/lib/glycopeptidepy/_c 2023-09-16T00:15:05,659 copying glycopeptidepy/_c/collectiontools.c -> build/lib/glycopeptidepy/_c 2023-09-16T00:15:05,671 copying glycopeptidepy/_c/collectiontools.pxd -> build/lib/glycopeptidepy/_c 2023-09-16T00:15:05,673 copying glycopeptidepy/_c/collectiontools.pyx -> build/lib/glycopeptidepy/_c 2023-09-16T00:15:05,675 copying glycopeptidepy/_c/compat.h -> build/lib/glycopeptidepy/_c 2023-09-16T00:15:05,677 copying glycopeptidepy/_c/compat.pxd -> build/lib/glycopeptidepy/_c 2023-09-16T00:15:05,678 copying glycopeptidepy/_c/count_table.c -> build/lib/glycopeptidepy/_c 2023-09-16T00:15:05,680 copying glycopeptidepy/_c/count_table.pxd -> build/lib/glycopeptidepy/_c 2023-09-16T00:15:05,682 copying glycopeptidepy/_c/count_table.pyx -> build/lib/glycopeptidepy/_c 2023-09-16T00:15:05,685 copying glycopeptidepy/_c/parser.c -> build/lib/glycopeptidepy/_c 2023-09-16T00:15:05,692 copying glycopeptidepy/_c/parser.pxd -> build/lib/glycopeptidepy/_c 2023-09-16T00:15:05,694 copying glycopeptidepy/_c/parser.pyx -> build/lib/glycopeptidepy/_c 2023-09-16T00:15:05,696 copying glycopeptidepy/_c/structure/base.c -> build/lib/glycopeptidepy/_c/structure 2023-09-16T00:15:05,711 copying glycopeptidepy/_c/structure/base.pxd -> build/lib/glycopeptidepy/_c/structure 2023-09-16T00:15:05,713 copying glycopeptidepy/_c/structure/base.pyx -> build/lib/glycopeptidepy/_c/structure 2023-09-16T00:15:05,715 copying glycopeptidepy/_c/structure/constants.c -> build/lib/glycopeptidepy/_c/structure 2023-09-16T00:15:05,721 copying glycopeptidepy/_c/structure/constants.pxd -> build/lib/glycopeptidepy/_c/structure 2023-09-16T00:15:05,723 copying glycopeptidepy/_c/structure/constants.pyx -> build/lib/glycopeptidepy/_c/structure 2023-09-16T00:15:05,725 copying glycopeptidepy/_c/structure/fragment.c -> build/lib/glycopeptidepy/_c/structure 2023-09-16T00:15:05,747 copying glycopeptidepy/_c/structure/fragment.pxd -> build/lib/glycopeptidepy/_c/structure 2023-09-16T00:15:05,751 copying glycopeptidepy/_c/structure/fragment.pyx -> build/lib/glycopeptidepy/_c/structure 2023-09-16T00:15:05,757 copying glycopeptidepy/_c/structure/glycan.c -> build/lib/glycopeptidepy/_c/structure 2023-09-16T00:15:05,769 copying glycopeptidepy/_c/structure/glycan.pxd -> build/lib/glycopeptidepy/_c/structure 2023-09-16T00:15:05,770 copying glycopeptidepy/_c/structure/glycan.pyx -> build/lib/glycopeptidepy/_c/structure 2023-09-16T00:15:05,773 copying glycopeptidepy/_c/structure/sequence_methods.c -> build/lib/glycopeptidepy/_c/structure 2023-09-16T00:15:05,788 copying glycopeptidepy/_c/structure/sequence_methods.pxd -> build/lib/glycopeptidepy/_c/structure 2023-09-16T00:15:05,789 copying glycopeptidepy/_c/structure/sequence_methods.pyx -> build/lib/glycopeptidepy/_c/structure 2023-09-16T00:15:05,792 copying glycopeptidepy/_c/structure/modification/modification.c -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:05,800 copying glycopeptidepy/_c/structure/modification/modification.pxd -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:05,802 copying glycopeptidepy/_c/structure/modification/modification.pyx -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:05,804 copying glycopeptidepy/_c/structure/modification/rule.c -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:05,818 copying glycopeptidepy/_c/structure/modification/rule.pxd -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:05,820 copying glycopeptidepy/_c/structure/modification/rule.pyx -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:05,822 copying glycopeptidepy/_c/structure/modification/source.c -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:05,830 copying glycopeptidepy/_c/structure/modification/source.pxd -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:05,832 copying glycopeptidepy/_c/structure/modification/source.pyx -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:05,833 copying glycopeptidepy/_c/structure/modification/target.pyx -> build/lib/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:05,835 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:05,843 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:05,845 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:05,847 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:05,869 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:05,871 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:05,874 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:05,895 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:05,897 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/lib/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:05,900 copying glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/lib/glycopeptidepy/structure/modification/data 2023-09-16T00:15:05,903 copying glycopeptidepy/structure/modification/data/unimod.json -> build/lib/glycopeptidepy/structure/modification/data 2023-09-16T00:15:05,960 installing to build/bdist.linux-armv7l/wheel 2023-09-16T00:15:05,961 running install 2023-09-16T00:15:05,989 running install_lib 2023-09-16T00:15:05,997 creating build/bdist.linux-armv7l 2023-09-16T00:15:05,998 creating build/bdist.linux-armv7l/wheel 2023-09-16T00:15:06,000 creating build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-16T00:15:06,003 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-16T00:15:06,004 copying build/lib/glycopeptidepy/test/test_enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-16T00:15:06,006 copying build/lib/glycopeptidepy/test/test_uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-16T00:15:06,009 copying build/lib/glycopeptidepy/test/test_sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-16T00:15:06,011 copying build/lib/glycopeptidepy/test/test_fragmentation_strategy.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-16T00:15:06,013 copying build/lib/glycopeptidepy/test/test_residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-16T00:15:06,016 copying build/lib/glycopeptidepy/test/test_modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-16T00:15:06,019 copying build/lib/glycopeptidepy/test/common.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-16T00:15:06,021 copying build/lib/glycopeptidepy/test/test_fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-16T00:15:06,024 copying build/lib/glycopeptidepy/test/test_intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-16T00:15:06,026 copying build/lib/glycopeptidepy/test/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-16T00:15:06,027 copying build/lib/glycopeptidepy/test/test_utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-16T00:15:06,030 copying build/lib/glycopeptidepy/test/test_algorithms.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-16T00:15:06,032 copying build/lib/glycopeptidepy/test/test_fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-16T00:15:06,035 copying build/lib/glycopeptidepy/test/test_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-16T00:15:06,038 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-16T00:15:06,040 copying build/lib/glycopeptidepy/_c/parser.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-16T00:15:06,042 copying build/lib/glycopeptidepy/_c/collectiontools.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-16T00:15:06,053 copying build/lib/glycopeptidepy/_c/compat.h -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-16T00:15:06,055 copying build/lib/glycopeptidepy/_c/collectiontools.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-16T00:15:06,057 copying build/lib/glycopeptidepy/_c/parser.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-16T00:15:06,065 copying build/lib/glycopeptidepy/_c/cythonize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-16T00:15:06,067 copying build/lib/glycopeptidepy/_c/parser.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-16T00:15:06,071 copying build/lib/glycopeptidepy/_c/count_table.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-16T00:15:06,076 copying build/lib/glycopeptidepy/_c/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-16T00:15:06,082 copying build/lib/glycopeptidepy/_c/collectiontools.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-16T00:15:06,084 copying build/lib/glycopeptidepy/_c/algorithm.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-16T00:15:06,086 copying build/lib/glycopeptidepy/_c/compat.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-16T00:15:06,089 copying build/lib/glycopeptidepy/_c/count_table.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-16T00:15:06,091 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-16T00:15:06,092 copying build/lib/glycopeptidepy/_c/structure/constants.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-16T00:15:06,099 copying build/lib/glycopeptidepy/_c/structure/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-16T00:15:06,102 copying build/lib/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-16T00:15:06,105 copying build/lib/glycopeptidepy/_c/structure/fragment.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-16T00:15:06,127 copying build/lib/glycopeptidepy/_c/structure/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-16T00:15:06,141 copying build/lib/glycopeptidepy/_c/structure/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-16T00:15:06,143 copying build/lib/glycopeptidepy/_c/structure/constants.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-16T00:15:06,144 copying build/lib/glycopeptidepy/_c/structure/constants.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-16T00:15:06,146 copying build/lib/glycopeptidepy/_c/structure/fragment.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-16T00:15:06,148 copying build/lib/glycopeptidepy/_c/structure/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-16T00:15:06,151 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:06,152 copying build/lib/glycopeptidepy/_c/structure/modification/modification.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:06,154 copying build/lib/glycopeptidepy/_c/structure/modification/target.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:06,155 copying build/lib/glycopeptidepy/_c/structure/modification/modification.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:06,162 copying build/lib/glycopeptidepy/_c/structure/modification/modification.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:06,164 copying build/lib/glycopeptidepy/_c/structure/modification/rule.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:06,166 copying build/lib/glycopeptidepy/_c/structure/modification/source.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:06,169 copying build/lib/glycopeptidepy/_c/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:06,170 copying build/lib/glycopeptidepy/_c/structure/modification/rule.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:06,180 copying build/lib/glycopeptidepy/_c/structure/modification/rule.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:06,182 copying build/lib/glycopeptidepy/_c/structure/modification/source.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:06,189 copying build/lib/glycopeptidepy/_c/structure/modification/source.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-16T00:15:06,191 copying build/lib/glycopeptidepy/_c/structure/fragment.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-16T00:15:06,193 copying build/lib/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-16T00:15:06,195 copying build/lib/glycopeptidepy/_c/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-16T00:15:06,197 copying build/lib/glycopeptidepy/_c/structure/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-16T00:15:06,211 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:06,212 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:06,214 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:06,216 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:06,224 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:06,226 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:06,229 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:06,257 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:06,261 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:06,263 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:06,288 copying build/lib/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-16T00:15:06,289 copying build/lib/glycopeptidepy/_c/structure/sequence_methods.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-16T00:15:06,303 copying build/lib/glycopeptidepy/_c/structure/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-16T00:15:06,305 copying build/lib/glycopeptidepy/_c/algorithm.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-16T00:15:06,319 copying build/lib/glycopeptidepy/_c/count_table.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-16T00:15:06,321 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-16T00:15:06,322 copying build/lib/glycopeptidepy/utils/collectiontools.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-16T00:15:06,324 copying build/lib/glycopeptidepy/utils/sequence_tree.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-16T00:15:06,326 copying build/lib/glycopeptidepy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-16T00:15:06,327 copying build/lib/glycopeptidepy/utils/iterators.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-16T00:15:06,329 copying build/lib/glycopeptidepy/utils/intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-16T00:15:06,332 copying build/lib/glycopeptidepy/utils/memoize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-16T00:15:06,334 copying build/lib/glycopeptidepy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-16T00:15:06,336 copying build/lib/glycopeptidepy/version.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-16T00:15:06,337 copying build/lib/glycopeptidepy/enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-16T00:15:06,340 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-16T00:15:06,341 copying build/lib/glycopeptidepy/io/mzid.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-16T00:15:06,343 copying build/lib/glycopeptidepy/io/uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-16T00:15:06,346 copying build/lib/glycopeptidepy/io/annotation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-16T00:15:06,348 copying build/lib/glycopeptidepy/io/fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-16T00:15:06,351 copying build/lib/glycopeptidepy/io/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-16T00:15:06,352 copying build/lib/glycopeptidepy/io/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-16T00:15:06,355 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-16T00:15:06,356 copying build/lib/glycopeptidepy/io/cv/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-16T00:15:06,358 copying build/lib/glycopeptidepy/io/cv/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-16T00:15:06,359 copying build/lib/glycopeptidepy/io/cv/term.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-16T00:15:06,362 copying build/lib/glycopeptidepy/io/cv/peff.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-16T00:15:06,364 copying build/lib/glycopeptidepy/io/nextprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-16T00:15:06,366 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-16T00:15:06,368 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-16T00:15:06,369 copying build/lib/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-16T00:15:06,371 copying build/lib/glycopeptidepy/structure/sequence/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-16T00:15:06,373 copying build/lib/glycopeptidepy/structure/sequence/implementation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-16T00:15:06,376 copying build/lib/glycopeptidepy/structure/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-16T00:15:06,377 copying build/lib/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-16T00:15:06,380 copying build/lib/glycopeptidepy/structure/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-16T00:15:06,382 copying build/lib/glycopeptidepy/structure/fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-16T00:15:06,385 copying build/lib/glycopeptidepy/structure/terminal_group.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-16T00:15:06,387 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-16T00:15:06,388 copying build/lib/glycopeptidepy/structure/modification/source.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-16T00:15:06,390 copying build/lib/glycopeptidepy/structure/modification/modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-16T00:15:06,393 copying build/lib/glycopeptidepy/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-16T00:15:06,394 copying build/lib/glycopeptidepy/structure/modification/target.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-16T00:15:06,397 copying build/lib/glycopeptidepy/structure/modification/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-16T00:15:06,398 copying build/lib/glycopeptidepy/structure/modification/glycosylation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-16T00:15:06,401 copying build/lib/glycopeptidepy/structure/modification/rule.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-16T00:15:06,404 copying build/lib/glycopeptidepy/structure/modification/descriptors.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-16T00:15:06,406 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-16T00:15:06,407 copying build/lib/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-16T00:15:06,410 copying build/lib/glycopeptidepy/structure/modification/data/unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-16T00:15:06,413 copying build/lib/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-16T00:15:06,415 copying build/lib/glycopeptidepy/structure/modification/data/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-16T00:15:06,417 copying build/lib/glycopeptidepy/structure/modification/data/unimod.json -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-16T00:15:06,454 copying build/lib/glycopeptidepy/structure/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-16T00:15:06,457 copying build/lib/glycopeptidepy/structure/composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-16T00:15:06,459 copying build/lib/glycopeptidepy/structure/parser.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-16T00:15:06,461 copying build/lib/glycopeptidepy/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-16T00:15:06,463 copying build/lib/glycopeptidepy/structure/residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-16T00:15:06,466 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-16T00:15:06,467 copying build/lib/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-16T00:15:06,471 copying build/lib/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-16T00:15:06,473 copying build/lib/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-16T00:15:06,475 copying build/lib/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-16T00:15:06,477 copying build/lib/glycopeptidepy/structure/constants.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-16T00:15:06,479 copying build/lib/glycopeptidepy/structure/sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-16T00:15:06,482 copying build/lib/glycopeptidepy/algorithm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-16T00:15:06,484 running install_egg_info 2023-09-16T00:15:06,497 Copying glycopeptidepy.egg-info to build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.15-py3.11.egg-info 2023-09-16T00:15:06,514 running install_scripts 2023-09-16T00:15:06,527 creating build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.15.dist-info/WHEEL 2023-09-16T00:15:06,530 creating '/tmp/pip-wheel-ec20cpnw/.tmp-c0cp_lcz/glycopeptidepy-0.0.15-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-16T00:15:06,532 adding 'glycopeptidepy/__init__.py' 2023-09-16T00:15:06,535 adding 'glycopeptidepy/algorithm.py' 2023-09-16T00:15:06,538 adding 'glycopeptidepy/enzyme.py' 2023-09-16T00:15:06,540 adding 'glycopeptidepy/version.py' 2023-09-16T00:15:06,541 adding 'glycopeptidepy/_c/__init__.py' 2023-09-16T00:15:06,598 adding 'glycopeptidepy/_c/algorithm.c' 2023-09-16T00:15:06,606 adding 'glycopeptidepy/_c/algorithm.pyx' 2023-09-16T00:15:06,642 adding 'glycopeptidepy/_c/collectiontools.c' 2023-09-16T00:15:06,647 adding 'glycopeptidepy/_c/collectiontools.pxd' 2023-09-16T00:15:06,648 adding 'glycopeptidepy/_c/collectiontools.pyx' 2023-09-16T00:15:06,650 adding 'glycopeptidepy/_c/compat.h' 2023-09-16T00:15:06,651 adding 'glycopeptidepy/_c/compat.pxd' 2023-09-16T00:15:06,652 adding 'glycopeptidepy/_c/count_table.c' 2023-09-16T00:15:06,653 adding 'glycopeptidepy/_c/count_table.pxd' 2023-09-16T00:15:06,657 adding 'glycopeptidepy/_c/count_table.pyx' 2023-09-16T00:15:06,658 adding 'glycopeptidepy/_c/cythonize.py' 2023-09-16T00:15:06,689 adding 'glycopeptidepy/_c/parser.c' 2023-09-16T00:15:06,693 adding 'glycopeptidepy/_c/parser.pxd' 2023-09-16T00:15:06,695 adding 'glycopeptidepy/_c/parser.pyx' 2023-09-16T00:15:06,697 adding 'glycopeptidepy/_c/structure/__init__.py' 2023-09-16T00:15:06,752 adding 'glycopeptidepy/_c/structure/base.c' 2023-09-16T00:15:06,760 adding 'glycopeptidepy/_c/structure/base.pxd' 2023-09-16T00:15:06,762 adding 'glycopeptidepy/_c/structure/base.pyx' 2023-09-16T00:15:06,782 adding 'glycopeptidepy/_c/structure/constants.c' 2023-09-16T00:15:06,785 adding 'glycopeptidepy/_c/structure/constants.pxd' 2023-09-16T00:15:06,786 adding 'glycopeptidepy/_c/structure/constants.pyx' 2023-09-16T00:15:06,873 adding 'glycopeptidepy/_c/structure/fragment.c' 2023-09-16T00:15:06,885 adding 'glycopeptidepy/_c/structure/fragment.pxd' 2023-09-16T00:15:06,888 adding 'glycopeptidepy/_c/structure/fragment.pyx' 2023-09-16T00:15:06,929 adding 'glycopeptidepy/_c/structure/glycan.c' 2023-09-16T00:15:06,935 adding 'glycopeptidepy/_c/structure/glycan.pxd' 2023-09-16T00:15:06,937 adding 'glycopeptidepy/_c/structure/glycan.pyx' 2023-09-16T00:15:06,992 adding 'glycopeptidepy/_c/structure/sequence_methods.c' 2023-09-16T00:15:07,000 adding 'glycopeptidepy/_c/structure/sequence_methods.pxd' 2023-09-16T00:15:07,003 adding 'glycopeptidepy/_c/structure/sequence_methods.pyx' 2023-09-16T00:15:07,004 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py' 2023-09-16T00:15:07,031 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.c' 2023-09-16T00:15:07,035 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd' 2023-09-16T00:15:07,036 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx' 2023-09-16T00:15:07,118 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c' 2023-09-16T00:15:07,130 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd' 2023-09-16T00:15:07,134 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx' 2023-09-16T00:15:07,210 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c' 2023-09-16T00:15:07,221 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd' 2023-09-16T00:15:07,223 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx' 2023-09-16T00:15:07,225 adding 'glycopeptidepy/_c/structure/modification/__init__.py' 2023-09-16T00:15:07,250 adding 'glycopeptidepy/_c/structure/modification/modification.c' 2023-09-16T00:15:07,253 adding 'glycopeptidepy/_c/structure/modification/modification.pxd' 2023-09-16T00:15:07,254 adding 'glycopeptidepy/_c/structure/modification/modification.pyx' 2023-09-16T00:15:07,291 adding 'glycopeptidepy/_c/structure/modification/rule.c' 2023-09-16T00:15:07,297 adding 'glycopeptidepy/_c/structure/modification/rule.pxd' 2023-09-16T00:15:07,298 adding 'glycopeptidepy/_c/structure/modification/rule.pyx' 2023-09-16T00:15:07,324 adding 'glycopeptidepy/_c/structure/modification/source.c' 2023-09-16T00:15:07,327 adding 'glycopeptidepy/_c/structure/modification/source.pxd' 2023-09-16T00:15:07,329 adding 'glycopeptidepy/_c/structure/modification/source.pyx' 2023-09-16T00:15:07,330 adding 'glycopeptidepy/_c/structure/modification/target.pyx' 2023-09-16T00:15:07,332 adding 'glycopeptidepy/io/__init__.py' 2023-09-16T00:15:07,333 adding 'glycopeptidepy/io/annotation.py' 2023-09-16T00:15:07,337 adding 'glycopeptidepy/io/fasta.py' 2023-09-16T00:15:07,339 adding 'glycopeptidepy/io/mzid.py' 2023-09-16T00:15:07,340 adding 'glycopeptidepy/io/nextprot.py' 2023-09-16T00:15:07,343 adding 'glycopeptidepy/io/uniprot.py' 2023-09-16T00:15:07,344 adding 'glycopeptidepy/io/utils.py' 2023-09-16T00:15:07,346 adding 'glycopeptidepy/io/cv/__init__.py' 2023-09-16T00:15:07,347 adding 'glycopeptidepy/io/cv/peff.py' 2023-09-16T00:15:07,349 adding 'glycopeptidepy/io/cv/term.py' 2023-09-16T00:15:07,350 adding 'glycopeptidepy/io/cv/uniprot_ptm.py' 2023-09-16T00:15:07,353 adding 'glycopeptidepy/structure/__init__.py' 2023-09-16T00:15:07,354 adding 'glycopeptidepy/structure/base.py' 2023-09-16T00:15:07,355 adding 'glycopeptidepy/structure/composition.py' 2023-09-16T00:15:07,356 adding 'glycopeptidepy/structure/constants.py' 2023-09-16T00:15:07,359 adding 'glycopeptidepy/structure/fragment.py' 2023-09-16T00:15:07,361 adding 'glycopeptidepy/structure/glycan.py' 2023-09-16T00:15:07,363 adding 'glycopeptidepy/structure/parser.py' 2023-09-16T00:15:07,365 adding 'glycopeptidepy/structure/residue.py' 2023-09-16T00:15:07,367 adding 'glycopeptidepy/structure/sequence_composition.py' 2023-09-16T00:15:07,368 adding 'glycopeptidepy/structure/terminal_group.py' 2023-09-16T00:15:07,370 adding 'glycopeptidepy/structure/fragmentation_strategy/__init__.py' 2023-09-16T00:15:07,371 adding 'glycopeptidepy/structure/fragmentation_strategy/base.py' 2023-09-16T00:15:07,376 adding 'glycopeptidepy/structure/fragmentation_strategy/glycan.py' 2023-09-16T00:15:07,379 adding 'glycopeptidepy/structure/fragmentation_strategy/peptide.py' 2023-09-16T00:15:07,380 adding 'glycopeptidepy/structure/modification/__init__.py' 2023-09-16T00:15:07,382 adding 'glycopeptidepy/structure/modification/descriptors.py' 2023-09-16T00:15:07,383 adding 'glycopeptidepy/structure/modification/glycosylation.py' 2023-09-16T00:15:07,385 adding 'glycopeptidepy/structure/modification/modification.py' 2023-09-16T00:15:07,388 adding 'glycopeptidepy/structure/modification/rule.py' 2023-09-16T00:15:07,390 adding 'glycopeptidepy/structure/modification/source.py' 2023-09-16T00:15:07,392 adding 'glycopeptidepy/structure/modification/target.py' 2023-09-16T00:15:07,393 adding 'glycopeptidepy/structure/modification/utils.py' 2023-09-16T00:15:07,395 adding 'glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv' 2023-09-16T00:15:07,396 adding 'glycopeptidepy/structure/modification/data/__init__.py' 2023-09-16T00:15:07,397 adding 'glycopeptidepy/structure/modification/data/patch_unimod.py' 2023-09-16T00:15:07,462 adding 'glycopeptidepy/structure/modification/data/unimod.json' 2023-09-16T00:15:07,478 adding 'glycopeptidepy/structure/modification/data/unimod.py' 2023-09-16T00:15:07,480 adding 'glycopeptidepy/structure/sequence/__init__.py' 2023-09-16T00:15:07,482 adding 'glycopeptidepy/structure/sequence/base.py' 2023-09-16T00:15:07,484 adding 'glycopeptidepy/structure/sequence/glycosylated_sequence.py' 2023-09-16T00:15:07,485 adding 'glycopeptidepy/structure/sequence/implementation.py' 2023-09-16T00:15:07,487 adding 'glycopeptidepy/structure/sequence/mutable_sequence.py' 2023-09-16T00:15:07,488 adding 'glycopeptidepy/test/__init__.py' 2023-09-16T00:15:07,490 adding 'glycopeptidepy/test/common.py' 2023-09-16T00:15:07,491 adding 'glycopeptidepy/test/test_algorithms.py' 2023-09-16T00:15:07,492 adding 'glycopeptidepy/test/test_enzyme.py' 2023-09-16T00:15:07,494 adding 'glycopeptidepy/test/test_fasta.py' 2023-09-16T00:15:07,495 adding 'glycopeptidepy/test/test_fragment.py' 2023-09-16T00:15:07,497 adding 'glycopeptidepy/test/test_fragmentation_strategy.py' 2023-09-16T00:15:07,498 adding 'glycopeptidepy/test/test_intervals.py' 2023-09-16T00:15:07,499 adding 'glycopeptidepy/test/test_modification.py' 2023-09-16T00:15:07,500 adding 'glycopeptidepy/test/test_residue.py' 2023-09-16T00:15:07,502 adding 'glycopeptidepy/test/test_sequence.py' 2023-09-16T00:15:07,503 adding 'glycopeptidepy/test/test_sequence_composition.py' 2023-09-16T00:15:07,505 adding 'glycopeptidepy/test/test_uniprot.py' 2023-09-16T00:15:07,506 adding 'glycopeptidepy/test/test_utils.py' 2023-09-16T00:15:07,508 adding 'glycopeptidepy/utils/__init__.py' 2023-09-16T00:15:07,509 adding 'glycopeptidepy/utils/collectiontools.py' 2023-09-16T00:15:07,511 adding 'glycopeptidepy/utils/intervals.py' 2023-09-16T00:15:07,513 adding 'glycopeptidepy/utils/iterators.py' 2023-09-16T00:15:07,514 adding 'glycopeptidepy/utils/memoize.py' 2023-09-16T00:15:07,516 adding 'glycopeptidepy/utils/sequence_tree.py' 2023-09-16T00:15:07,518 adding 'glycopeptidepy-0.0.15.dist-info/METADATA' 2023-09-16T00:15:07,519 adding 'glycopeptidepy-0.0.15.dist-info/WHEEL' 2023-09-16T00:15:07,520 adding 'glycopeptidepy-0.0.15.dist-info/top_level.txt' 2023-09-16T00:15:07,522 adding 'glycopeptidepy-0.0.15.dist-info/RECORD' 2023-09-16T00:15:07,539 removing build/bdist.linux-armv7l/wheel 2023-09-16T00:15:07,575 *************************************************************************** 2023-09-16T00:15:07,576 WARNING: The C extension could not be compiled, speedups are not enabled. 2023-09-16T00:15:07,577 Plain-Python build succeeded. 2023-09-16T00:15:07,578 *************************************************************************** 2023-09-16T00:15:07,848 Building wheel for glycopeptidepy (pyproject.toml): finished with status 'done' 2023-09-16T00:15:07,893 Created wheel for glycopeptidepy: filename=glycopeptidepy-0.0.15-py3-none-any.whl size=1354716 sha256=cf7123d2cb78c72510d96e8baf036cd209e10cc4f0e4e0d5902c22307047ea0f 2023-09-16T00:15:07,894 Stored in directory: /tmp/pip-ephem-wheel-cache-7oj0hd60/wheels/5f/b9/16/e425a8d90d19e13358fa647bbe27d47f5ce6779818264e485b 2023-09-16T00:15:07,907 Successfully built glycopeptidepy 2023-09-16T00:15:07,951 Removed build tracker: '/tmp/pip-build-tracker-v43u_cy5'