2023-09-16T10:32:41,513 Created temporary directory: /tmp/pip-build-tracker-tfiac24v 2023-09-16T10:32:41,514 Initialized build tracking at /tmp/pip-build-tracker-tfiac24v 2023-09-16T10:32:41,514 Created build tracker: /tmp/pip-build-tracker-tfiac24v 2023-09-16T10:32:41,515 Entered build tracker: /tmp/pip-build-tracker-tfiac24v 2023-09-16T10:32:41,516 Created temporary directory: /tmp/pip-wheel-51kcwogz 2023-09-16T10:32:41,519 Created temporary directory: /tmp/pip-ephem-wheel-cache-f3m0w1qo 2023-09-16T10:32:41,548 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-16T10:32:41,552 2 location(s) to search for versions of hydride: 2023-09-16T10:32:41,552 * https://pypi.org/simple/hydride/ 2023-09-16T10:32:41,552 * https://www.piwheels.org/simple/hydride/ 2023-09-16T10:32:41,553 Fetching project page and analyzing links: https://pypi.org/simple/hydride/ 2023-09-16T10:32:41,554 Getting page https://pypi.org/simple/hydride/ 2023-09-16T10:32:41,555 Found index url https://pypi.org/simple/ 2023-09-16T10:32:41,737 Fetched page https://pypi.org/simple/hydride/ as application/vnd.pypi.simple.v1+json 2023-09-16T10:32:41,746 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/c1/ca/10e337628717f218cd81d4978284023a49507206b884407939c9ac8259be/hydride-0.1.0-py3-none-any.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7,<4.0) 2023-09-16T10:32:41,747 Found link https://files.pythonhosted.org/packages/1c/b4/d17a34568a8a3f21e6f237ea45dadb2a13a2a0f03465e4de752caf1b47aa/hydride-0.1.0.tar.gz (from https://pypi.org/simple/hydride/) (requires-python:>=3.7,<4.0), version: 0.1.0 2023-09-16T10:32:41,748 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/82/4b/f96e324dcf4705ec39bb8153fa954a8fc8658a38767c70e4f26cbc1c4981/hydride-1.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,749 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/7d/1c/0a440a3a51e68d876c31d4cdf6429cea8af9d0438bbff432f90973027dac/hydride-1.0.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,749 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/e9/ec/b654ae4347b4372e5a4c00c330b4d8304bcf7307f34d1d2ace0489ca0bab/hydride-1.0.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,750 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/e9/58/0ee938ed1abca37c48533d7af0a22aef36c7a2a64cfacdd27b64d4473640/hydride-1.0.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,750 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/09/47/7c84f8e6b282e2cb4959134620da86b8d1a63ca4a90fe10fed6f3606748e/hydride-1.0.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,751 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/6b/94/41346ab7c36be1821b5e4b27cca8047863feaca12f5f324dc09ecd2f0c2f/hydride-1.0.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,751 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/af/50/8fa7c180fbabc1406f5fd3e052f19c0b8f17fd4946b8e60275ffb3f288fa/hydride-1.0.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,752 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/37/af/35a3c5099559d3d84497bd52e0a45e8679b0bf7e25ebe8cc5cbfc2d8c312/hydride-1.0.0-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,752 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/bc/d2/2b55d85ca01ea592babee40f1fa2ee787a9f467670f996f8f7476c648549/hydride-1.0.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,753 Found link https://files.pythonhosted.org/packages/00/a4/7b8ca110619fb5c74c555b91223bdfe38c0551c944e6291f8ad3c7bd3ca4/hydride-1.0.0.tar.gz (from https://pypi.org/simple/hydride/) (requires-python:>=3.7), version: 1.0.0 2023-09-16T10:32:41,754 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/69/fc/910197f4448fc4c20cf65d66d9fc0c51463eaa0c06e9838fb9c7fbe60e64/hydride-1.1.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,755 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/fe/00/74759e1c2099cb462fb1cfc2b5a4b5131bee9fc172e097e80b6fcae489e8/hydride-1.1.0-cp310-cp310-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,755 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/41/4b/8a5e4f990ac3a3ff08218f1263dc1bc45dc21aea2d5ffa5f8943c7c4913f/hydride-1.1.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,756 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/a3/f5/17329c029a5d9a9bac612eb84bd1c32734ad52bbce292427369a4ed1a372/hydride-1.1.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,756 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/00/f8/7145de2d08c70588187ddada8a7f1c6bd696a9247973833086651ca6e7b7/hydride-1.1.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,757 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/79/d6/a851b2cec64641a62b94fdb5a02ed715171c098f061e36472f5df66f0c32/hydride-1.1.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,757 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/7e/01/b4ca501199235069110ae8f913122b434422d5ca5e9f72215b48ecf9cf68/hydride-1.1.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,757 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/ed/e5/849f9e8f6aa1dc7b3432388fdd5d2f21be64d4a813399b9862e2b6f5d041/hydride-1.1.0-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,758 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/3b/1e/e691328a2b40c1d6894146542020bc074d488f334c103e3091ae33fa49f2/hydride-1.1.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,759 Found link https://files.pythonhosted.org/packages/2d/1d/70b2507223bd0d8986068236beb1ad0178e405c51de8718499e4e671cb15/hydride-1.1.0.tar.gz (from https://pypi.org/simple/hydride/) (requires-python:>=3.7), version: 1.1.0 2023-09-16T10:32:41,760 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/de/b1/10fa73f14fc62eec90bbb95931a46acbcf8674580656cf34339358b7d431/hydride-1.1.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,760 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/08/08/877ad64acaf60950a41280b5d819d41b063a705042bff71dde4be6e5f82e/hydride-1.1.1-cp310-cp310-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,761 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/9f/14/96b1caf87f260ea00db658e83e6ae6d09e8bc096a2003b721e1384ffd11f/hydride-1.1.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,762 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/6f/b3/d7184f2ffdaf8ed63488163c663bc6f3d99120a01250ed6812e41cd4df7b/hydride-1.1.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,762 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/12/0d/fdd485a72d0301e40728ed1e8030562e517c5e69c3cf38828326eae5ed81/hydride-1.1.1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,763 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/89/11/daede9543ed710ebc5c163105c68c68355df12c8c2d1942bc8ea50e92e89/hydride-1.1.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,763 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/4a/a5/eb07e8887485bea6c290a27ccaf64ca72bf9da79664408247ec379585cc8/hydride-1.1.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,764 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/c1/6d/61aa50a96943b6503e4a7e323bc2b40bb0e5a6c2b98eb0b7f55eb419dce4/hydride-1.1.1-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,764 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/3b/2e/293d03ff36d5eae2699be25d899a61d7f0525bfcc1de4d2d2948477c2fbf/hydride-1.1.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,765 Found link https://files.pythonhosted.org/packages/6a/ed/a63ee98669907ef3316d4a39084b2274ebb52ea741fd26d408e1cd5adc08/hydride-1.1.1.tar.gz (from https://pypi.org/simple/hydride/) (requires-python:>=3.7), version: 1.1.1 2023-09-16T10:32:41,765 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/4d/d0/eeee127d8a47cd6842b3099e9365a292cd6a2ae8e4b4565a86fdc75becdb/hydride-1.1.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,766 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/65/db/b1cfba194c916ba99fd4a7bdf121098f153ad20dec27cf2c8a2b059f52f3/hydride-1.1.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,767 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/a5/a7/758a1d59672bf7c5c301bc89b911cb2f357ed106acbb8723600936ccaeb9/hydride-1.1.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,767 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/7e/7d/9c81f27b1183d661af993374bddfc4e14ed64f9be2eb93e808f4f0c7757b/hydride-1.1.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,768 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/7c/20/40ae9f6a99f434cd5c5db423f220fca2c8e9919fb455347107e7eea36190/hydride-1.1.2-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,768 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/cb/94/6f86716d642354efc1b5b51240d8a7aaf99069fd577357bf1121455ff253/hydride-1.1.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,769 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/42/ec/bc8674ec225e394f9d16a37dff943250ac76082139d8932322c06912f2df/hydride-1.1.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,770 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/7a/53/5f35976f533b8b42c5d2e85f99c7abe111973f7007d8192a0706717abcff/hydride-1.1.2-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,770 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/6f/cd/ad58bdaf7a8e57a44e9c247ade9eab88d631a24c567a9292674919a1d987/hydride-1.1.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,771 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/e3/54/ef7eacaa7c262f0fb8708b6bbb32e0f0596d03fff195baa3a7a0ac9e5f37/hydride-1.1.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,771 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/f0/f8/3cf99968ad47183c0a8f31bc3ecf4e261de35414b338698f90aeb1aaa205/hydride-1.1.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,772 Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/60/06/de67650274107f2523eed6771f112dd6ac5c589f8f46ccddb60a7416ec59/hydride-1.1.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:41,772 Found link https://files.pythonhosted.org/packages/7d/6a/1629fd07665ab8bff04e6f9c9031d63a555792cbef6a74ba6ff477d3d6ba/hydride-1.1.2.tar.gz (from https://pypi.org/simple/hydride/) (requires-python:>=3.7), version: 1.1.2 2023-09-16T10:32:41,773 Fetching project page and analyzing links: https://www.piwheels.org/simple/hydride/ 2023-09-16T10:32:41,774 Getting page https://www.piwheels.org/simple/hydride/ 2023-09-16T10:32:41,775 Found index url https://www.piwheels.org/simple/ 2023-09-16T10:32:42,189 Fetched page https://www.piwheels.org/simple/hydride/ as text/html 2023-09-16T10:32:42,192 Skipping link: No binaries permitted for hydride: https://www.piwheels.org/simple/hydride/hydride-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=1ce3f7726c994696bc76e32871af167117cbbcb7f490b9eb6613f9ece249b13a (from https://www.piwheels.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:42,192 Skipping link: No binaries permitted for hydride: https://www.piwheels.org/simple/hydride/hydride-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=1ce3f7726c994696bc76e32871af167117cbbcb7f490b9eb6613f9ece249b13a (from https://www.piwheels.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:42,193 Skipping link: No binaries permitted for hydride: https://www.piwheels.org/simple/hydride/hydride-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=40da0a39d4755dda084ca337ffdcf3f5444bbc4c5b64a5c2c8f266999a05aa4a (from https://www.piwheels.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:42,194 Skipping link: No binaries permitted for hydride: https://www.piwheels.org/simple/hydride/hydride-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=40da0a39d4755dda084ca337ffdcf3f5444bbc4c5b64a5c2c8f266999a05aa4a (from https://www.piwheels.org/simple/hydride/) (requires-python:>=3.7) 2023-09-16T10:32:42,194 Skipping link: No binaries permitted for hydride: https://www.piwheels.org/simple/hydride/hydride-0.1.0-py3-none-any.whl#sha256=a456732a6cf18307244549dabc3384559c6861beb4d3be3dbb2ec64b71d3be19 (from https://www.piwheels.org/simple/hydride/) (requires-python:>=3.7,<4.0) 2023-09-16T10:32:42,195 Skipping link: not a file: https://www.piwheels.org/simple/hydride/ 2023-09-16T10:32:42,196 Skipping link: not a file: https://pypi.org/simple/hydride/ 2023-09-16T10:32:42,214 Given no hashes to check 1 links for project 'hydride': discarding no candidates 2023-09-16T10:32:42,232 Collecting hydride==1.1.0 2023-09-16T10:32:42,235 Created temporary directory: /tmp/pip-unpack-r_fu6on5 2023-09-16T10:32:42,371 Downloading hydride-1.1.0.tar.gz (236 kB) 2023-09-16T10:32:42,560 Added hydride==1.1.0 from https://files.pythonhosted.org/packages/2d/1d/70b2507223bd0d8986068236beb1ad0178e405c51de8718499e4e671cb15/hydride-1.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-tfiac24v' 2023-09-16T10:32:42,569 Created temporary directory: /tmp/pip-build-env-_csyds0t 2023-09-16T10:32:42,574 Installing build dependencies: started 2023-09-16T10:32:42,575 Running command pip subprocess to install build dependencies 2023-09-16T10:32:43,710 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-16T10:32:44,237 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-16T10:32:46,049 Collecting setuptools>=0.30 2023-09-16T10:32:46,050 Obtaining dependency information for setuptools>=0.30 from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-16T10:32:46,065 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-16T10:32:46,323 Collecting wheel>=0.30 2023-09-16T10:32:46,341 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-16T10:32:46,769 Collecting biotite>=0.28 2023-09-16T10:32:46,913 Downloading biotite-0.38.0.tar.gz (32.7 MB) 2023-09-16T10:32:51,168 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 32.7/32.7 MB 3.3 MB/s eta 0:00:00 2023-09-16T10:32:58,462 Installing build dependencies: started 2023-09-16T10:32:58,463 Running command pip subprocess to install build dependencies 2023-09-16T10:33:00,514 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-16T10:33:02,291 Collecting setuptools>=0.30 2023-09-16T10:33:02,293 Obtaining dependency information for setuptools>=0.30 from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-16T10:33:02,298 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-16T10:33:02,512 Collecting wheel>=0.30 2023-09-16T10:33:02,528 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-16T10:33:02,635 Collecting oldest-supported-numpy 2023-09-16T10:33:02,649 Using cached https://www.piwheels.org/simple/oldest-supported-numpy/oldest_supported_numpy-2023.8.3-py3-none-any.whl (4.8 kB) 2023-09-16T10:33:04,020 Collecting cython>=3.0 2023-09-16T10:33:04,021 Obtaining dependency information for cython>=3.0 from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata 2023-09-16T10:33:04,035 Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-16T10:33:05,452 Collecting numpy==1.23.2 (from oldest-supported-numpy) 2023-09-16T10:33:05,453 Using cached numpy-1.23.2-cp311-cp311-linux_armv7l.whl 2023-09-16T10:33:05,521 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-16T10:33:05,560 Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB) 2023-09-16T10:33:09,231 Installing collected packages: wheel, setuptools, numpy, cython, oldest-supported-numpy 2023-09-16T10:33:22,987 Successfully installed cython-3.0.2 numpy-1.23.2 oldest-supported-numpy-2023.8.3 setuptools-68.2.2 wheel-0.41.2 2023-09-16T10:33:24,080 Installing build dependencies: finished with status 'done' 2023-09-16T10:33:24,088 Getting requirements to build wheel: started 2023-09-16T10:33:24,091 Running command Getting requirements to build wheel 2023-09-16T10:33:27,292 running egg_info 2023-09-16T10:33:27,298 writing src/biotite.egg-info/PKG-INFO 2023-09-16T10:33:27,302 writing dependency_links to src/biotite.egg-info/dependency_links.txt 2023-09-16T10:33:27,304 writing requirements to src/biotite.egg-info/requires.txt 2023-09-16T10:33:27,306 writing top-level names to src/biotite.egg-info/top_level.txt 2023-09-16T10:33:27,368 reading manifest file 'src/biotite.egg-info/SOURCES.txt' 2023-09-16T10:33:27,377 reading manifest template 'MANIFEST.in' 2023-09-16T10:33:27,378 adding license file 'LICENSE.rst' 2023-09-16T10:33:27,392 writing manifest file 'src/biotite.egg-info/SOURCES.txt' 2023-09-16T10:33:27,581 Getting requirements to build wheel: finished with status 'done' 2023-09-16T10:33:27,596 Preparing metadata (pyproject.toml): started 2023-09-16T10:33:27,597 Running command Preparing metadata (pyproject.toml) 2023-09-16T10:33:29,538 running dist_info 2023-09-16T10:33:29,544 creating /tmp/pip-modern-metadata-dm542h8z/biotite.egg-info 2023-09-16T10:33:29,549 writing /tmp/pip-modern-metadata-dm542h8z/biotite.egg-info/PKG-INFO 2023-09-16T10:33:29,554 writing dependency_links to /tmp/pip-modern-metadata-dm542h8z/biotite.egg-info/dependency_links.txt 2023-09-16T10:33:29,556 writing requirements to /tmp/pip-modern-metadata-dm542h8z/biotite.egg-info/requires.txt 2023-09-16T10:33:29,557 writing top-level names to /tmp/pip-modern-metadata-dm542h8z/biotite.egg-info/top_level.txt 2023-09-16T10:33:29,558 writing manifest file '/tmp/pip-modern-metadata-dm542h8z/biotite.egg-info/SOURCES.txt' 2023-09-16T10:33:29,613 reading manifest file '/tmp/pip-modern-metadata-dm542h8z/biotite.egg-info/SOURCES.txt' 2023-09-16T10:33:29,615 reading manifest template 'MANIFEST.in' 2023-09-16T10:33:29,616 adding license file 'LICENSE.rst' 2023-09-16T10:33:29,627 writing manifest file '/tmp/pip-modern-metadata-dm542h8z/biotite.egg-info/SOURCES.txt' 2023-09-16T10:33:29,629 creating '/tmp/pip-modern-metadata-dm542h8z/biotite-0.38.0.dist-info' 2023-09-16T10:33:29,852 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-16T10:33:30,558 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-16T10:33:30,565 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-16T10:33:30,572 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-16T10:33:30,579 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-16T10:33:30,586 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-16T10:33:31,214 Collecting numpy<=1.21,>=1.14 2023-09-16T10:33:31,227 Downloading numpy-1.21.0.zip (10.3 MB) 2023-09-16T10:33:32,020 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.3/10.3 MB 13.0 MB/s eta 0:00:00 2023-09-16T10:33:35,818 Installing build dependencies: started 2023-09-16T10:33:35,819 Running command pip subprocess to install build dependencies 2023-09-16T10:33:37,467 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-16T10:33:37,469 Ignoring packaging: markers 'platform_machine == "arm64"' don't match your environment 2023-09-16T10:33:40,082 Collecting setuptools<49.2.0 2023-09-16T10:33:40,411 Using cached https://www.piwheels.org/simple/setuptools/setuptools-49.1.3-py3-none-any.whl (792 kB) 2023-09-16T10:33:40,639 Collecting wheel==0.36.2 2023-09-16T10:33:40,661 Using cached https://www.piwheels.org/simple/wheel/wheel-0.36.2-py2.py3-none-any.whl (35 kB) 2023-09-16T10:33:42,033 Collecting Cython<3.0,>=0.29.21 2023-09-16T10:33:42,035 Obtaining dependency information for Cython<3.0,>=0.29.21 from https://files.pythonhosted.org/packages/3f/d6/9eed523aeaca42acbaa3e6d3850edae780dc7f8da9df1bf6a2ceb851839c/Cython-0.29.36-py2.py3-none-any.whl.metadata 2023-09-16T10:33:42,040 Using cached Cython-0.29.36-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-16T10:33:42,143 Using cached Cython-0.29.36-py2.py3-none-any.whl (988 kB) 2023-09-16T10:33:44,534 Installing collected packages: wheel, setuptools, Cython 2023-09-16T10:33:48,935 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. 2023-09-16T10:33:48,936 setuptools-rust 1.7.0 requires setuptools>=62.4, but you have setuptools 49.1.3 which is incompatible. 2023-09-16T10:33:48,938 Successfully installed Cython-0.29.36 setuptools-49.1.3 wheel-0.36.2 2023-09-16T10:33:49,546 Installing build dependencies: finished with status 'done' 2023-09-16T10:33:49,558 Getting requirements to build wheel: started 2023-09-16T10:33:49,559 Running command Getting requirements to build wheel 2023-09-16T10:33:50,070 setup.py:63: RuntimeWarning: NumPy 1.21.0 may not yet support Python 3.11. 2023-09-16T10:33:50,071 warnings.warn( 2023-09-16T10:33:50,083 Running from numpy source directory. 2023-09-16T10:33:50,928 running egg_info 2023-09-16T10:33:50,930 running build_src 2023-09-16T10:33:50,930 build_src 2023-09-16T10:33:50,931 creating numpy.egg-info 2023-09-16T10:33:50,932 writing numpy.egg-info/PKG-INFO 2023-09-16T10:33:50,935 writing dependency_links to numpy.egg-info/dependency_links.txt 2023-09-16T10:33:50,936 writing entry points to numpy.egg-info/entry_points.txt 2023-09-16T10:33:50,937 writing top-level names to numpy.egg-info/top_level.txt 2023-09-16T10:33:50,939 writing manifest file 'numpy.egg-info/SOURCES.txt' 2023-09-16T10:33:50,942 reading manifest file 'numpy.egg-info/SOURCES.txt' 2023-09-16T10:33:50,944 reading manifest template 'MANIFEST.in' 2023-09-16T10:33:50,946 warning: no previously-included files found matching 'LICENSES_bundled.txt' 2023-09-16T10:33:50,947 warning: no previously-included files found matching '.*' 2023-09-16T10:33:50,948 warning: no previously-included files found matching 'azure-*.yml' 2023-09-16T10:33:52,975 no previously-included directories found matching 'doc/build' 2023-09-16T10:33:52,978 no previously-included directories found matching 'doc/source/generated' 2023-09-16T10:33:52,989 no previously-included directories found matching 'benchmarks/env' 2023-09-16T10:33:52,992 no previously-included directories found matching 'benchmarks/results' 2023-09-16T10:33:52,995 no previously-included directories found matching 'benchmarks/html' 2023-09-16T10:33:52,997 no previously-included directories found matching 'benchmarks/numpy' 2023-09-16T10:33:53,010 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2023-09-16T10:33:53,015 warning: no previously-included files matching '*.pyd' found anywhere in distribution 2023-09-16T10:33:53,021 warning: no previously-included files matching '*.swp' found anywhere in distribution 2023-09-16T10:33:53,026 warning: no previously-included files matching '*.bak' found anywhere in distribution 2023-09-16T10:33:53,032 warning: no previously-included files matching '*~' found anywhere in distribution 2023-09-16T10:33:53,083 writing manifest file 'numpy.egg-info/SOURCES.txt' 2023-09-16T10:33:53,205 Getting requirements to build wheel: finished with status 'done' 2023-09-16T10:33:53,215 Preparing metadata (pyproject.toml): started 2023-09-16T10:33:53,216 Running command Preparing metadata (pyproject.toml) 2023-09-16T10:33:53,667 setup.py:63: RuntimeWarning: NumPy 1.21.0 may not yet support Python 3.11. 2023-09-16T10:33:53,668 warnings.warn( 2023-09-16T10:33:53,671 Running from numpy source directory. 2023-09-16T10:33:54,134 running dist_info 2023-09-16T10:33:54,137 running build_src 2023-09-16T10:33:54,138 build_src 2023-09-16T10:33:54,138 creating /tmp/pip-modern-metadata-s_cjpnxw/numpy.egg-info 2023-09-16T10:33:54,139 writing /tmp/pip-modern-metadata-s_cjpnxw/numpy.egg-info/PKG-INFO 2023-09-16T10:33:54,142 writing dependency_links to /tmp/pip-modern-metadata-s_cjpnxw/numpy.egg-info/dependency_links.txt 2023-09-16T10:33:54,143 writing entry points to /tmp/pip-modern-metadata-s_cjpnxw/numpy.egg-info/entry_points.txt 2023-09-16T10:33:54,144 writing top-level names to /tmp/pip-modern-metadata-s_cjpnxw/numpy.egg-info/top_level.txt 2023-09-16T10:33:54,146 writing manifest file '/tmp/pip-modern-metadata-s_cjpnxw/numpy.egg-info/SOURCES.txt' 2023-09-16T10:33:54,148 reading manifest file '/tmp/pip-modern-metadata-s_cjpnxw/numpy.egg-info/SOURCES.txt' 2023-09-16T10:33:54,149 reading manifest template 'MANIFEST.in' 2023-09-16T10:33:54,151 warning: no previously-included files found matching 'LICENSES_bundled.txt' 2023-09-16T10:33:54,152 warning: no previously-included files found matching '.*' 2023-09-16T10:33:54,152 warning: no previously-included files found matching 'azure-*.yml' 2023-09-16T10:33:55,227 no previously-included directories found matching 'doc/build' 2023-09-16T10:33:55,229 no previously-included directories found matching 'doc/source/generated' 2023-09-16T10:33:55,240 no previously-included directories found matching 'benchmarks/env' 2023-09-16T10:33:55,242 no previously-included directories found matching 'benchmarks/results' 2023-09-16T10:33:55,244 no previously-included directories found matching 'benchmarks/html' 2023-09-16T10:33:55,246 no previously-included directories found matching 'benchmarks/numpy' 2023-09-16T10:33:55,258 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2023-09-16T10:33:55,264 warning: no previously-included files matching '*.pyd' found anywhere in distribution 2023-09-16T10:33:55,269 warning: no previously-included files matching '*.swp' found anywhere in distribution 2023-09-16T10:33:55,274 warning: no previously-included files matching '*.bak' found anywhere in distribution 2023-09-16T10:33:55,278 warning: no previously-included files matching '*~' found anywhere in distribution 2023-09-16T10:33:55,329 writing manifest file '/tmp/pip-modern-metadata-s_cjpnxw/numpy.egg-info/SOURCES.txt' 2023-09-16T10:33:55,332 creating '/tmp/pip-modern-metadata-s_cjpnxw/numpy.dist-info' 2023-09-16T10:33:55,384 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2023-09-16T10:33:55,512 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-16T10:33:56,164 Collecting msgpack>=0.5.6 2023-09-16T10:33:56,185 Using cached https://www.piwheels.org/simple/msgpack/msgpack-1.0.3-cp311-cp311-linux_armv7l.whl (15 kB) 2023-09-16T10:33:57,618 Collecting cython>=0.29 2023-09-16T10:33:57,619 Obtaining dependency information for cython>=0.29 from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata 2023-09-16T10:33:57,623 Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-16T10:33:58,040 Collecting requests>=2.12 (from biotite>=0.28) 2023-09-16T10:33:58,056 Using cached https://www.piwheels.org/simple/requests/requests-2.31.0-py3-none-any.whl (62 kB) 2023-09-16T10:33:58,278 Collecting networkx>=2.0 (from biotite>=0.28) 2023-09-16T10:33:58,436 Using cached https://www.piwheels.org/simple/networkx/networkx-3.1-py3-none-any.whl (2.1 MB) 2023-09-16T10:33:58,997 Collecting charset-normalizer<4,>=2 (from requests>=2.12->biotite>=0.28) 2023-09-16T10:33:59,015 Using cached https://www.piwheels.org/simple/charset-normalizer/charset_normalizer-3.2.0-py3-none-any.whl (46 kB) 2023-09-16T10:33:59,119 Collecting idna<4,>=2.5 (from requests>=2.12->biotite>=0.28) 2023-09-16T10:33:59,136 Using cached https://www.piwheels.org/simple/idna/idna-3.4-py3-none-any.whl (61 kB) 2023-09-16T10:33:59,430 Collecting urllib3<3,>=1.21.1 (from requests>=2.12->biotite>=0.28) 2023-09-16T10:33:59,448 Using cached https://www.piwheels.org/simple/urllib3/urllib3-2.0.4-py3-none-any.whl (123 kB) 2023-09-16T10:33:59,603 Collecting certifi>=2017.4.17 (from requests>=2.12->biotite>=0.28) 2023-09-16T10:33:59,622 Using cached https://www.piwheels.org/simple/certifi/certifi-2023.7.22-py3-none-any.whl (158 kB) 2023-09-16T10:33:59,714 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-16T10:33:59,743 Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB) 2023-09-16T10:33:59,822 Building wheels for collected packages: biotite, numpy 2023-09-16T10:33:59,828 Building wheel for biotite (pyproject.toml): started 2023-09-16T10:33:59,828 Running command Building wheel for biotite (pyproject.toml) 2023-09-16T10:34:01,449 running bdist_wheel 2023-09-16T10:34:01,471 running build 2023-09-16T10:34:01,472 running build_py 2023-09-16T10:34:01,477 creating build 2023-09-16T10:34:01,478 creating build/lib.linux-armv7l-cpython-311 2023-09-16T10:34:01,478 creating build/lib.linux-armv7l-cpython-311/biotite 2023-09-16T10:34:01,480 copying src/biotite/visualize.py -> build/lib.linux-armv7l-cpython-311/biotite 2023-09-16T10:34:01,482 copying src/biotite/file.py -> build/lib.linux-armv7l-cpython-311/biotite 2023-09-16T10:34:01,484 copying src/biotite/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite 2023-09-16T10:34:01,486 copying src/biotite/temp.py -> build/lib.linux-armv7l-cpython-311/biotite 2023-09-16T10:34:01,488 copying src/biotite/copyable.py -> build/lib.linux-armv7l-cpython-311/biotite 2023-09-16T10:34:01,490 creating build/lib.linux-armv7l-cpython-311/biotite/application 2023-09-16T10:34:01,491 copying src/biotite/application/msaapp.py -> build/lib.linux-armv7l-cpython-311/biotite/application 2023-09-16T10:34:01,494 copying src/biotite/application/util.py -> build/lib.linux-armv7l-cpython-311/biotite/application 2023-09-16T10:34:01,496 copying src/biotite/application/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/application 2023-09-16T10:34:01,498 copying src/biotite/application/localapp.py -> build/lib.linux-armv7l-cpython-311/biotite/application 2023-09-16T10:34:01,500 copying src/biotite/application/webapp.py -> build/lib.linux-armv7l-cpython-311/biotite/application 2023-09-16T10:34:01,502 copying src/biotite/application/application.py -> build/lib.linux-armv7l-cpython-311/biotite/application 2023-09-16T10:34:01,505 creating build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,506 copying src/biotite/structure/chains.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,509 copying src/biotite/structure/geometry.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,511 copying src/biotite/structure/hbond.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,514 copying src/biotite/structure/pseudoknots.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,516 copying src/biotite/structure/sse.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,518 copying src/biotite/structure/box.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,521 copying src/biotite/structure/filter.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,523 copying src/biotite/structure/superimpose.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,525 copying src/biotite/structure/resutil.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,528 copying src/biotite/structure/rdf.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,530 copying src/biotite/structure/compare.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,532 copying src/biotite/structure/transform.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,535 copying src/biotite/structure/density.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,537 copying src/biotite/structure/dotbracket.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,540 copying src/biotite/structure/util.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,542 copying src/biotite/structure/atoms.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,545 copying src/biotite/structure/residues.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,548 copying src/biotite/structure/basepairs.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,551 copying src/biotite/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,553 copying src/biotite/structure/molecules.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,555 copying src/biotite/structure/integrity.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,558 copying src/biotite/structure/mechanics.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,560 copying src/biotite/structure/error.py -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:01,563 creating build/lib.linux-armv7l-cpython-311/biotite/sequence 2023-09-16T10:34:01,564 copying src/biotite/sequence/sequence.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence 2023-09-16T10:34:01,567 copying src/biotite/sequence/seqtypes.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence 2023-09-16T10:34:01,569 copying src/biotite/sequence/alphabet.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence 2023-09-16T10:34:01,572 copying src/biotite/sequence/codon.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence 2023-09-16T10:34:01,575 copying src/biotite/sequence/search.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence 2023-09-16T10:34:01,577 copying src/biotite/sequence/annotation.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence 2023-09-16T10:34:01,580 copying src/biotite/sequence/profile.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence 2023-09-16T10:34:01,581 copying src/biotite/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence 2023-09-16T10:34:01,584 creating build/lib.linux-armv7l-cpython-311/biotite/database 2023-09-16T10:34:01,585 copying src/biotite/database/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/database 2023-09-16T10:34:01,587 copying src/biotite/database/error.py -> build/lib.linux-armv7l-cpython-311/biotite/database 2023-09-16T10:34:01,589 creating build/lib.linux-armv7l-cpython-311/biotite/application/dssp 2023-09-16T10:34:01,590 copying src/biotite/application/dssp/app.py -> build/lib.linux-armv7l-cpython-311/biotite/application/dssp 2023-09-16T10:34:01,592 copying src/biotite/application/dssp/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/application/dssp 2023-09-16T10:34:01,595 creating build/lib.linux-armv7l-cpython-311/biotite/application/autodock 2023-09-16T10:34:01,596 copying src/biotite/application/autodock/app.py -> build/lib.linux-armv7l-cpython-311/biotite/application/autodock 2023-09-16T10:34:01,600 copying src/biotite/application/autodock/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/application/autodock 2023-09-16T10:34:01,602 creating build/lib.linux-armv7l-cpython-311/biotite/application/muscle 2023-09-16T10:34:01,603 copying src/biotite/application/muscle/app5.py -> build/lib.linux-armv7l-cpython-311/biotite/application/muscle 2023-09-16T10:34:01,607 copying src/biotite/application/muscle/app3.py -> build/lib.linux-armv7l-cpython-311/biotite/application/muscle 2023-09-16T10:34:01,609 copying src/biotite/application/muscle/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/application/muscle 2023-09-16T10:34:01,611 creating build/lib.linux-armv7l-cpython-311/biotite/application/viennarna 2023-09-16T10:34:01,613 copying src/biotite/application/viennarna/util.py -> build/lib.linux-armv7l-cpython-311/biotite/application/viennarna 2023-09-16T10:34:01,615 copying src/biotite/application/viennarna/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/application/viennarna 2023-09-16T10:34:01,617 copying src/biotite/application/viennarna/rnaplot.py -> build/lib.linux-armv7l-cpython-311/biotite/application/viennarna 2023-09-16T10:34:01,620 copying src/biotite/application/viennarna/rnaalifold.py -> build/lib.linux-armv7l-cpython-311/biotite/application/viennarna 2023-09-16T10:34:01,622 copying src/biotite/application/viennarna/rnafold.py -> build/lib.linux-armv7l-cpython-311/biotite/application/viennarna 2023-09-16T10:34:01,625 creating build/lib.linux-armv7l-cpython-311/biotite/application/clustalo 2023-09-16T10:34:01,626 copying src/biotite/application/clustalo/app.py -> build/lib.linux-armv7l-cpython-311/biotite/application/clustalo 2023-09-16T10:34:01,629 copying src/biotite/application/clustalo/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/application/clustalo 2023-09-16T10:34:01,631 creating build/lib.linux-armv7l-cpython-311/biotite/application/mafft 2023-09-16T10:34:01,632 copying src/biotite/application/mafft/app.py -> build/lib.linux-armv7l-cpython-311/biotite/application/mafft 2023-09-16T10:34:01,634 copying src/biotite/application/mafft/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/application/mafft 2023-09-16T10:34:01,636 creating build/lib.linux-armv7l-cpython-311/biotite/application/sra 2023-09-16T10:34:01,637 copying src/biotite/application/sra/app.py -> build/lib.linux-armv7l-cpython-311/biotite/application/sra 2023-09-16T10:34:01,639 copying src/biotite/application/sra/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/application/sra 2023-09-16T10:34:01,641 creating build/lib.linux-armv7l-cpython-311/biotite/application/blast 2023-09-16T10:34:01,643 copying src/biotite/application/blast/alignment.py -> build/lib.linux-armv7l-cpython-311/biotite/application/blast 2023-09-16T10:34:01,644 copying src/biotite/application/blast/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/application/blast 2023-09-16T10:34:01,646 copying src/biotite/application/blast/webapp.py -> build/lib.linux-armv7l-cpython-311/biotite/application/blast 2023-09-16T10:34:01,649 creating build/lib.linux-armv7l-cpython-311/biotite/application/tantan 2023-09-16T10:34:01,650 copying src/biotite/application/tantan/app.py -> build/lib.linux-armv7l-cpython-311/biotite/application/tantan 2023-09-16T10:34:01,653 copying src/biotite/application/tantan/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/application/tantan 2023-09-16T10:34:01,655 creating build/lib.linux-armv7l-cpython-311/biotite/structure/graphics 2023-09-16T10:34:01,656 copying src/biotite/structure/graphics/atoms.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/graphics 2023-09-16T10:34:01,658 copying src/biotite/structure/graphics/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/graphics 2023-09-16T10:34:01,660 copying src/biotite/structure/graphics/rna.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/graphics 2023-09-16T10:34:01,663 creating build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:01,664 copying src/biotite/structure/info/masses.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:01,667 copying src/biotite/structure/info/nucleotides.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:01,669 copying src/biotite/structure/info/bonds.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:01,671 copying src/biotite/structure/info/amino_acids.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:01,673 copying src/biotite/structure/info/standardize.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:01,675 copying src/biotite/structure/info/carbohydrates.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:01,677 copying src/biotite/structure/info/atoms.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:01,679 copying src/biotite/structure/info/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:01,681 copying src/biotite/structure/info/radii.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:01,683 copying src/biotite/structure/info/misc.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:01,686 creating build/lib.linux-armv7l-cpython-311/biotite/structure/io 2023-09-16T10:34:01,687 copying src/biotite/structure/io/trajfile.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io 2023-09-16T10:34:01,689 copying src/biotite/structure/io/general.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io 2023-09-16T10:34:01,692 copying src/biotite/structure/io/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io 2023-09-16T10:34:01,693 copying src/biotite/structure/io/ctab.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io 2023-09-16T10:34:01,696 creating build/lib.linux-armv7l-cpython-311/biotite/structure/io/xtc 2023-09-16T10:34:01,697 copying src/biotite/structure/io/xtc/file.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/xtc 2023-09-16T10:34:01,700 copying src/biotite/structure/io/xtc/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/xtc 2023-09-16T10:34:01,702 creating build/lib.linux-armv7l-cpython-311/biotite/structure/io/gro 2023-09-16T10:34:01,704 copying src/biotite/structure/io/gro/file.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/gro 2023-09-16T10:34:01,707 copying src/biotite/structure/io/gro/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/gro 2023-09-16T10:34:01,709 creating build/lib.linux-armv7l-cpython-311/biotite/structure/io/netcdf 2023-09-16T10:34:01,711 copying src/biotite/structure/io/netcdf/file.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/netcdf 2023-09-16T10:34:01,713 copying src/biotite/structure/io/netcdf/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/netcdf 2023-09-16T10:34:01,716 creating build/lib.linux-armv7l-cpython-311/biotite/structure/io/mol 2023-09-16T10:34:01,718 copying src/biotite/structure/io/mol/file.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/mol 2023-09-16T10:34:01,720 copying src/biotite/structure/io/mol/convert.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/mol 2023-09-16T10:34:01,722 copying src/biotite/structure/io/mol/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/mol 2023-09-16T10:34:01,725 creating build/lib.linux-armv7l-cpython-311/biotite/structure/io/dcd 2023-09-16T10:34:01,726 copying src/biotite/structure/io/dcd/file.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/dcd 2023-09-16T10:34:01,728 copying src/biotite/structure/io/dcd/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/dcd 2023-09-16T10:34:01,731 creating build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdbx 2023-09-16T10:34:01,732 copying src/biotite/structure/io/pdbx/file.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdbx 2023-09-16T10:34:01,736 copying src/biotite/structure/io/pdbx/convert.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdbx 2023-09-16T10:34:01,739 copying src/biotite/structure/io/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdbx 2023-09-16T10:34:01,741 creating build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdb 2023-09-16T10:34:01,742 copying src/biotite/structure/io/pdb/file.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdb 2023-09-16T10:34:01,745 copying src/biotite/structure/io/pdb/convert.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdb 2023-09-16T10:34:01,748 copying src/biotite/structure/io/pdb/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdb 2023-09-16T10:34:01,751 creating build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdbqt 2023-09-16T10:34:01,753 copying src/biotite/structure/io/pdbqt/file.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdbqt 2023-09-16T10:34:01,757 copying src/biotite/structure/io/pdbqt/convert.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdbqt 2023-09-16T10:34:01,759 copying src/biotite/structure/io/pdbqt/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdbqt 2023-09-16T10:34:01,762 creating build/lib.linux-armv7l-cpython-311/biotite/structure/io/tng 2023-09-16T10:34:01,764 copying src/biotite/structure/io/tng/file.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/tng 2023-09-16T10:34:01,767 copying src/biotite/structure/io/tng/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/tng 2023-09-16T10:34:01,769 creating build/lib.linux-armv7l-cpython-311/biotite/structure/io/trr 2023-09-16T10:34:01,771 copying src/biotite/structure/io/trr/file.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/trr 2023-09-16T10:34:01,774 copying src/biotite/structure/io/trr/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/trr 2023-09-16T10:34:01,777 creating build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf 2023-09-16T10:34:01,779 copying src/biotite/structure/io/mmtf/assembly.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf 2023-09-16T10:34:01,782 copying src/biotite/structure/io/mmtf/file.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf 2023-09-16T10:34:01,785 copying src/biotite/structure/io/mmtf/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf 2023-09-16T10:34:01,788 creating build/lib.linux-armv7l-cpython-311/biotite/structure/io/npz 2023-09-16T10:34:01,790 copying src/biotite/structure/io/npz/file.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/npz 2023-09-16T10:34:01,793 copying src/biotite/structure/io/npz/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/npz 2023-09-16T10:34:01,796 creating build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics 2023-09-16T10:34:01,798 copying src/biotite/sequence/graphics/logo.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics 2023-09-16T10:34:01,801 copying src/biotite/sequence/graphics/plasmid.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics 2023-09-16T10:34:01,804 copying src/biotite/sequence/graphics/colorschemes.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics 2023-09-16T10:34:01,807 copying src/biotite/sequence/graphics/features.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics 2023-09-16T10:34:01,810 copying src/biotite/sequence/graphics/dendrogram.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics 2023-09-16T10:34:01,813 copying src/biotite/sequence/graphics/alignment.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics 2023-09-16T10:34:01,817 copying src/biotite/sequence/graphics/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics 2023-09-16T10:34:01,820 creating build/lib.linux-armv7l-cpython-311/biotite/sequence/io 2023-09-16T10:34:01,822 copying src/biotite/sequence/io/general.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/io 2023-09-16T10:34:01,825 copying src/biotite/sequence/io/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/io 2023-09-16T10:34:01,828 creating build/lib.linux-armv7l-cpython-311/biotite/sequence/phylo 2023-09-16T10:34:01,830 copying src/biotite/sequence/phylo/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/phylo 2023-09-16T10:34:01,833 creating build/lib.linux-armv7l-cpython-311/biotite/sequence/align 2023-09-16T10:34:01,835 copying src/biotite/sequence/align/matrix.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align 2023-09-16T10:34:01,838 copying src/biotite/sequence/align/alignment.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align 2023-09-16T10:34:01,841 copying src/biotite/sequence/align/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align 2023-09-16T10:34:01,844 copying src/biotite/sequence/align/statistics.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align 2023-09-16T10:34:01,847 creating build/lib.linux-armv7l-cpython-311/biotite/sequence/io/gff 2023-09-16T10:34:01,849 copying src/biotite/sequence/io/gff/file.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/io/gff 2023-09-16T10:34:01,852 copying src/biotite/sequence/io/gff/convert.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/io/gff 2023-09-16T10:34:01,855 copying src/biotite/sequence/io/gff/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/io/gff 2023-09-16T10:34:01,858 creating build/lib.linux-armv7l-cpython-311/biotite/sequence/io/fasta 2023-09-16T10:34:01,860 copying src/biotite/sequence/io/fasta/file.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/io/fasta 2023-09-16T10:34:01,863 copying src/biotite/sequence/io/fasta/convert.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/io/fasta 2023-09-16T10:34:01,866 copying src/biotite/sequence/io/fasta/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/io/fasta 2023-09-16T10:34:01,869 creating build/lib.linux-armv7l-cpython-311/biotite/sequence/io/fastq 2023-09-16T10:34:01,870 copying src/biotite/sequence/io/fastq/file.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/io/fastq 2023-09-16T10:34:01,874 copying src/biotite/sequence/io/fastq/convert.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/io/fastq 2023-09-16T10:34:01,876 copying src/biotite/sequence/io/fastq/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/io/fastq 2023-09-16T10:34:01,879 creating build/lib.linux-armv7l-cpython-311/biotite/sequence/io/genbank 2023-09-16T10:34:01,880 copying src/biotite/sequence/io/genbank/sequence.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/io/genbank 2023-09-16T10:34:01,882 copying src/biotite/sequence/io/genbank/file.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/io/genbank 2023-09-16T10:34:01,885 copying src/biotite/sequence/io/genbank/annotation.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/io/genbank 2023-09-16T10:34:01,887 copying src/biotite/sequence/io/genbank/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/io/genbank 2023-09-16T10:34:01,889 copying src/biotite/sequence/io/genbank/metadata.py -> build/lib.linux-armv7l-cpython-311/biotite/sequence/io/genbank 2023-09-16T10:34:01,891 creating build/lib.linux-armv7l-cpython-311/biotite/database/rcsb 2023-09-16T10:34:01,893 copying src/biotite/database/rcsb/download.py -> build/lib.linux-armv7l-cpython-311/biotite/database/rcsb 2023-09-16T10:34:01,895 copying src/biotite/database/rcsb/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/database/rcsb 2023-09-16T10:34:01,897 copying src/biotite/database/rcsb/query.py -> build/lib.linux-armv7l-cpython-311/biotite/database/rcsb 2023-09-16T10:34:01,900 creating build/lib.linux-armv7l-cpython-311/biotite/database/pubchem 2023-09-16T10:34:01,901 copying src/biotite/database/pubchem/download.py -> build/lib.linux-armv7l-cpython-311/biotite/database/pubchem 2023-09-16T10:34:01,904 copying src/biotite/database/pubchem/throttle.py -> build/lib.linux-armv7l-cpython-311/biotite/database/pubchem 2023-09-16T10:34:01,905 copying src/biotite/database/pubchem/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/database/pubchem 2023-09-16T10:34:01,907 copying src/biotite/database/pubchem/error.py -> build/lib.linux-armv7l-cpython-311/biotite/database/pubchem 2023-09-16T10:34:01,909 copying src/biotite/database/pubchem/query.py -> build/lib.linux-armv7l-cpython-311/biotite/database/pubchem 2023-09-16T10:34:01,912 creating build/lib.linux-armv7l-cpython-311/biotite/database/uniprot 2023-09-16T10:34:01,914 copying src/biotite/database/uniprot/download.py -> build/lib.linux-armv7l-cpython-311/biotite/database/uniprot 2023-09-16T10:34:01,916 copying src/biotite/database/uniprot/check.py -> build/lib.linux-armv7l-cpython-311/biotite/database/uniprot 2023-09-16T10:34:01,918 copying src/biotite/database/uniprot/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/database/uniprot 2023-09-16T10:34:01,920 copying src/biotite/database/uniprot/query.py -> build/lib.linux-armv7l-cpython-311/biotite/database/uniprot 2023-09-16T10:34:01,922 creating build/lib.linux-armv7l-cpython-311/biotite/database/entrez 2023-09-16T10:34:01,924 copying src/biotite/database/entrez/dbnames.py -> build/lib.linux-armv7l-cpython-311/biotite/database/entrez 2023-09-16T10:34:01,926 copying src/biotite/database/entrez/download.py -> build/lib.linux-armv7l-cpython-311/biotite/database/entrez 2023-09-16T10:34:01,928 copying src/biotite/database/entrez/check.py -> build/lib.linux-armv7l-cpython-311/biotite/database/entrez 2023-09-16T10:34:01,930 copying src/biotite/database/entrez/__init__.py -> build/lib.linux-armv7l-cpython-311/biotite/database/entrez 2023-09-16T10:34:01,933 copying src/biotite/database/entrez/query.py -> build/lib.linux-armv7l-cpython-311/biotite/database/entrez 2023-09-16T10:34:01,937 running egg_info 2023-09-16T10:34:01,942 writing src/biotite.egg-info/PKG-INFO 2023-09-16T10:34:01,946 writing dependency_links to src/biotite.egg-info/dependency_links.txt 2023-09-16T10:34:01,949 writing requirements to src/biotite.egg-info/requires.txt 2023-09-16T10:34:01,951 writing top-level names to src/biotite.egg-info/top_level.txt 2023-09-16T10:34:02,013 reading manifest file 'src/biotite.egg-info/SOURCES.txt' 2023-09-16T10:34:02,021 reading manifest template 'MANIFEST.in' 2023-09-16T10:34:02,023 adding license file 'LICENSE.rst' 2023-09-16T10:34:02,037 writing manifest file 'src/biotite.egg-info/SOURCES.txt' 2023-09-16T10:34:02,042 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'biotite.sequence.align.matrix_data' is absent from the `packages` configuration. 2023-09-16T10:34:02,042 !! 2023-09-16T10:34:02,046 ******************************************************************************** 2023-09-16T10:34:02,047 ############################ 2023-09-16T10:34:02,047 # Package would be ignored # 2023-09-16T10:34:02,048 ############################ 2023-09-16T10:34:02,049 Python recognizes 'biotite.sequence.align.matrix_data' as an importable package[^1], 2023-09-16T10:34:02,049 but it is absent from setuptools' `packages` configuration. 2023-09-16T10:34:02,051 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-16T10:34:02,051 package, please make sure that 'biotite.sequence.align.matrix_data' is explicitly added 2023-09-16T10:34:02,052 to the `packages` configuration field. 2023-09-16T10:34:02,054 Alternatively, you can also rely on setuptools' discovery methods 2023-09-16T10:34:02,054 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-16T10:34:02,055 instead of `find_packages(...)`/`find:`). 2023-09-16T10:34:02,056 You can read more about "package discovery" on setuptools documentation page: 2023-09-16T10:34:02,057 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-16T10:34:02,058 If you don't want 'biotite.sequence.align.matrix_data' to be distributed and are 2023-09-16T10:34:02,059 already explicitly excluding 'biotite.sequence.align.matrix_data' via 2023-09-16T10:34:02,059 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-16T10:34:02,060 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-16T10:34:02,060 combination with a more fine grained `package-data` configuration. 2023-09-16T10:34:02,061 You can read more about "package data files" on setuptools documentation page: 2023-09-16T10:34:02,063 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-16T10:34:02,064 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-16T10:34:02,065 even if it does not contain any `.py` files. 2023-09-16T10:34:02,066 On the other hand, currently there is no concept of package data 2023-09-16T10:34:02,066 directory, all directories are treated like packages. 2023-09-16T10:34:02,067 ******************************************************************************** 2023-09-16T10:34:02,068 !! 2023-09-16T10:34:02,069 check.warn(importable) 2023-09-16T10:34:02,070 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'biotite.sequence.graphics.color_schemes' is absent from the `packages` configuration. 2023-09-16T10:34:02,071 !! 2023-09-16T10:34:02,072 ******************************************************************************** 2023-09-16T10:34:02,073 ############################ 2023-09-16T10:34:02,073 # Package would be ignored # 2023-09-16T10:34:02,074 ############################ 2023-09-16T10:34:02,075 Python recognizes 'biotite.sequence.graphics.color_schemes' as an importable package[^1], 2023-09-16T10:34:02,076 but it is absent from setuptools' `packages` configuration. 2023-09-16T10:34:02,077 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-16T10:34:02,078 package, please make sure that 'biotite.sequence.graphics.color_schemes' is explicitly added 2023-09-16T10:34:02,079 to the `packages` configuration field. 2023-09-16T10:34:02,080 Alternatively, you can also rely on setuptools' discovery methods 2023-09-16T10:34:02,081 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-16T10:34:02,082 instead of `find_packages(...)`/`find:`). 2023-09-16T10:34:02,084 You can read more about "package discovery" on setuptools documentation page: 2023-09-16T10:34:02,085 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-16T10:34:02,093 If you don't want 'biotite.sequence.graphics.color_schemes' to be distributed and are 2023-09-16T10:34:02,100 already explicitly excluding 'biotite.sequence.graphics.color_schemes' via 2023-09-16T10:34:02,107 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-16T10:34:02,118 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-16T10:34:02,119 combination with a more fine grained `package-data` configuration. 2023-09-16T10:34:02,120 You can read more about "package data files" on setuptools documentation page: 2023-09-16T10:34:02,122 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-16T10:34:02,123 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-16T10:34:02,124 even if it does not contain any `.py` files. 2023-09-16T10:34:02,124 On the other hand, currently there is no concept of package data 2023-09-16T10:34:02,125 directory, all directories are treated like packages. 2023-09-16T10:34:02,125 ******************************************************************************** 2023-09-16T10:34:02,126 !! 2023-09-16T10:34:02,127 check.warn(importable) 2023-09-16T10:34:02,127 copying src/biotite/structure/bonds.c -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:02,130 copying src/biotite/structure/celllist.c -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:02,151 copying src/biotite/structure/charges.c -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:02,183 copying src/biotite/structure/sasa.c -> build/lib.linux-armv7l-cpython-311/biotite/structure 2023-09-16T10:34:02,247 copying src/biotite/sequence/codec.c -> build/lib.linux-armv7l-cpython-311/biotite/sequence 2023-09-16T10:34:02,271 copying src/biotite/sequence/codon_tables.txt -> build/lib.linux-armv7l-cpython-311/biotite/sequence 2023-09-16T10:34:02,274 copying src/biotite/structure/info/amino_acids.json -> build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:02,277 copying src/biotite/structure/info/atom_masses.json -> build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:02,282 copying src/biotite/structure/info/carbohydrates.json -> build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:02,329 copying src/biotite/structure/info/intra_bonds.msgpack -> build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:02,552 copying src/biotite/structure/info/link_types.msgpack -> build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:02,564 copying src/biotite/structure/info/nucleotides.json -> build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:02,566 copying src/biotite/structure/info/residue_masses.msgpack -> build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:02,575 copying src/biotite/structure/info/residue_names.msgpack -> build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:02,621 copying src/biotite/structure/info/residues.msgpack -> build/lib.linux-armv7l-cpython-311/biotite/structure/info 2023-09-16T10:34:03,672 copying src/biotite/structure/io/pdb/hybrid36.c -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdb 2023-09-16T10:34:03,691 copying src/biotite/structure/io/mmtf/convertarray.c -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf 2023-09-16T10:34:03,703 copying src/biotite/structure/io/mmtf/convertfile.c -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf 2023-09-16T10:34:03,727 copying src/biotite/structure/io/mmtf/decode.c -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf 2023-09-16T10:34:03,749 copying src/biotite/structure/io/mmtf/encode.c -> build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf 2023-09-16T10:34:03,821 creating build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,822 copying src/biotite/sequence/graphics/color_schemes/autumn.json -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,824 copying src/biotite/sequence/graphics/color_schemes/blossom.json -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,827 copying src/biotite/sequence/graphics/color_schemes/clustalx_dna.json -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,829 copying src/biotite/sequence/graphics/color_schemes/clustalx_protein.json -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,831 copying src/biotite/sequence/graphics/color_schemes/flower.json -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,834 copying src/biotite/sequence/graphics/color_schemes/jalview_buried.json -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,836 copying src/biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,838 copying src/biotite/sequence/graphics/color_schemes/jalview_prop_helix.json -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,841 copying src/biotite/sequence/graphics/color_schemes/jalview_prop_strand.json -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,843 copying src/biotite/sequence/graphics/color_schemes/jalview_prop_turn.json -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,845 copying src/biotite/sequence/graphics/color_schemes/jalview_taylor.json -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,848 copying src/biotite/sequence/graphics/color_schemes/jalview_zappo.json -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,850 copying src/biotite/sequence/graphics/color_schemes/ocean.json -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,853 copying src/biotite/sequence/graphics/color_schemes/pb_flower.json -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,855 copying src/biotite/sequence/graphics/color_schemes/rainbow_dna.json -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,857 copying src/biotite/sequence/graphics/color_schemes/rainbow_protein.json -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,860 copying src/biotite/sequence/graphics/color_schemes/spring.json -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,862 copying src/biotite/sequence/graphics/color_schemes/sunset.json -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,865 copying src/biotite/sequence/graphics/color_schemes/wither.json -> build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes 2023-09-16T10:34:03,867 copying src/biotite/sequence/phylo/nj.c -> build/lib.linux-armv7l-cpython-311/biotite/sequence/phylo 2023-09-16T10:34:03,887 copying src/biotite/sequence/phylo/tree.c -> build/lib.linux-armv7l-cpython-311/biotite/sequence/phylo 2023-09-16T10:34:03,915 copying src/biotite/sequence/phylo/upgma.c -> build/lib.linux-armv7l-cpython-311/biotite/sequence/phylo 2023-09-16T10:34:03,935 copying src/biotite/sequence/align/banded.c -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align 2023-09-16T10:34:03,972 copying src/biotite/sequence/align/kmeralphabet.c -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align 2023-09-16T10:34:04,000 copying src/biotite/sequence/align/kmersimilarity.c -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align 2023-09-16T10:34:04,020 copying src/biotite/sequence/align/kmertable.c -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align 2023-09-16T10:34:04,050 copying src/biotite/sequence/align/localgapped.c -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align 2023-09-16T10:34:04,118 copying src/biotite/sequence/align/localungapped.c -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align 2023-09-16T10:34:04,145 copying src/biotite/sequence/align/multiple.c -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align 2023-09-16T10:34:04,181 copying src/biotite/sequence/align/pairwise.c -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align 2023-09-16T10:34:04,225 copying src/biotite/sequence/align/tracetable.c -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align 2023-09-16T10:34:04,281 creating build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,282 copying src/biotite/sequence/align/matrix_data/BLOSUM100.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,285 copying src/biotite/sequence/align/matrix_data/BLOSUM30.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,287 copying src/biotite/sequence/align/matrix_data/BLOSUM35.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,289 copying src/biotite/sequence/align/matrix_data/BLOSUM40.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,291 copying src/biotite/sequence/align/matrix_data/BLOSUM45.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,294 copying src/biotite/sequence/align/matrix_data/BLOSUM50.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,296 copying src/biotite/sequence/align/matrix_data/BLOSUM50_13p.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,298 copying src/biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,300 copying src/biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,302 copying src/biotite/sequence/align/matrix_data/BLOSUM55.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,304 copying src/biotite/sequence/align/matrix_data/BLOSUM60.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,306 copying src/biotite/sequence/align/matrix_data/BLOSUM62.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,309 copying src/biotite/sequence/align/matrix_data/BLOSUM62_13p.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,311 copying src/biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,313 copying src/biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,315 copying src/biotite/sequence/align/matrix_data/BLOSUM65.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,317 copying src/biotite/sequence/align/matrix_data/BLOSUM70.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,320 copying src/biotite/sequence/align/matrix_data/BLOSUM75.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,323 copying src/biotite/sequence/align/matrix_data/BLOSUM80.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,325 copying src/biotite/sequence/align/matrix_data/BLOSUM85.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,327 copying src/biotite/sequence/align/matrix_data/BLOSUM90.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,330 copying src/biotite/sequence/align/matrix_data/BLOSUMN.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,332 copying src/biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,334 copying src/biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,336 copying src/biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,338 copying src/biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,340 copying src/biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,342 copying src/biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,344 copying src/biotite/sequence/align/matrix_data/DAYHOFF.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,347 copying src/biotite/sequence/align/matrix_data/GONNET.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,348 copying src/biotite/sequence/align/matrix_data/IDENTITY.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,351 copying src/biotite/sequence/align/matrix_data/MATCH.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,353 copying src/biotite/sequence/align/matrix_data/NUC.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,355 copying src/biotite/sequence/align/matrix_data/PAM10.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,357 copying src/biotite/sequence/align/matrix_data/PAM100.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,359 copying src/biotite/sequence/align/matrix_data/PAM110.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,361 copying src/biotite/sequence/align/matrix_data/PAM120.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,363 copying src/biotite/sequence/align/matrix_data/PAM130.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,365 copying src/biotite/sequence/align/matrix_data/PAM140.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,367 copying src/biotite/sequence/align/matrix_data/PAM150.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,370 copying src/biotite/sequence/align/matrix_data/PAM160.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,372 copying src/biotite/sequence/align/matrix_data/PAM170.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,374 copying src/biotite/sequence/align/matrix_data/PAM180.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,376 copying src/biotite/sequence/align/matrix_data/PAM190.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,378 copying src/biotite/sequence/align/matrix_data/PAM20.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,381 copying src/biotite/sequence/align/matrix_data/PAM200.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,383 copying src/biotite/sequence/align/matrix_data/PAM210.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,386 copying src/biotite/sequence/align/matrix_data/PAM220.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,388 copying src/biotite/sequence/align/matrix_data/PAM230.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,390 copying src/biotite/sequence/align/matrix_data/PAM240.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,392 copying src/biotite/sequence/align/matrix_data/PAM250.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,394 copying src/biotite/sequence/align/matrix_data/PAM260.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,396 copying src/biotite/sequence/align/matrix_data/PAM270.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,398 copying src/biotite/sequence/align/matrix_data/PAM280.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,401 copying src/biotite/sequence/align/matrix_data/PAM290.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,403 copying src/biotite/sequence/align/matrix_data/PAM30.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,405 copying src/biotite/sequence/align/matrix_data/PAM300.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,407 copying src/biotite/sequence/align/matrix_data/PAM310.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,409 copying src/biotite/sequence/align/matrix_data/PAM320.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,412 copying src/biotite/sequence/align/matrix_data/PAM330.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,414 copying src/biotite/sequence/align/matrix_data/PAM340.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,416 copying src/biotite/sequence/align/matrix_data/PAM350.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,418 copying src/biotite/sequence/align/matrix_data/PAM360.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,421 copying src/biotite/sequence/align/matrix_data/PAM370.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,423 copying src/biotite/sequence/align/matrix_data/PAM380.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,424 copying src/biotite/sequence/align/matrix_data/PAM390.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,427 copying src/biotite/sequence/align/matrix_data/PAM40.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,429 copying src/biotite/sequence/align/matrix_data/PAM400.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,431 copying src/biotite/sequence/align/matrix_data/PAM410.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,434 copying src/biotite/sequence/align/matrix_data/PAM420.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,436 copying src/biotite/sequence/align/matrix_data/PAM430.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,438 copying src/biotite/sequence/align/matrix_data/PAM440.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,440 copying src/biotite/sequence/align/matrix_data/PAM450.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,442 copying src/biotite/sequence/align/matrix_data/PAM460.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,446 copying src/biotite/sequence/align/matrix_data/PAM470.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,450 copying src/biotite/sequence/align/matrix_data/PAM480.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,452 copying src/biotite/sequence/align/matrix_data/PAM490.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,454 copying src/biotite/sequence/align/matrix_data/PAM50.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,456 copying src/biotite/sequence/align/matrix_data/PAM500.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,459 copying src/biotite/sequence/align/matrix_data/PAM60.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,461 copying src/biotite/sequence/align/matrix_data/PAM70.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,463 copying src/biotite/sequence/align/matrix_data/PAM80.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,466 copying src/biotite/sequence/align/matrix_data/PAM90.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,468 copying src/biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,470 copying src/biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,473 copying src/biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,475 copying src/biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,477 copying src/biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,479 copying src/biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat -> build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data 2023-09-16T10:34:04,498 running build_ext 2023-09-16T10:34:04,504 building 'biotite.structure.charges' extension 2023-09-16T10:34:04,506 creating build/temp.linux-armv7l-cpython-311 2023-09-16T10:34:04,507 creating build/temp.linux-armv7l-cpython-311/src 2023-09-16T10:34:04,509 creating build/temp.linux-armv7l-cpython-311/src/biotite 2023-09-16T10:34:04,511 creating build/temp.linux-armv7l-cpython-311/src/biotite/structure 2023-09-16T10:34:04,512 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/structure/charges.c -o build/temp.linux-armv7l-cpython-311/src/biotite/structure/charges.o 2023-09-16T10:34:04,882 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:34:04,884 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:34:04,885 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:34:04,887 from src/biotite/structure/charges.c:1167: 2023-09-16T10:34:04,888 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:34:04,890 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:34:04,891 | ^~~~~~~ 2023-09-16T10:34:05,283 src/biotite/structure/charges.c: In function ‘__pyx_pf_7biotite_9structure_7charges__get_parameters’: 2023-09-16T10:34:05,300 src/biotite/structure/charges.c:20620:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_7biotite_9structure_7charges_int8’ {aka ‘signed char’} and ‘__pyx_t_7biotite_9structure_7charges_uint32’ {aka ‘long unsigned int’} [-Wsign-compare] 2023-09-16T10:34:05,302 20620 | __pyx_t_14 = ((*((__pyx_t_7biotite_9structure_7charges_int8 *) ( /* dim=0 */ (__pyx_v_bond_types_v.data + __pyx_t_12 * __pyx_v_bond_types_v.strides[0]) ))) == __pyx_v_7biotite_9structure_7charges_ANY); 2023-09-16T10:34:05,305 | ^~ 2023-09-16T10:34:45,654 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/structure/charges.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/structure/charges.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:34:45,788 building 'biotite.structure.sasa' extension 2023-09-16T10:34:45,789 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/structure/sasa.c -o build/temp.linux-armv7l-cpython-311/src/biotite/structure/sasa.o 2023-09-16T10:34:46,166 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:34:46,167 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:34:46,168 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:34:46,168 from src/biotite/structure/sasa.c:1167: 2023-09-16T10:34:46,169 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:34:46,170 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:34:46,171 | ^~~~~~~ 2023-09-16T10:35:23,412 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/structure/sasa.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/structure/sasa.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:35:23,556 building 'biotite.structure.bonds' extension 2023-09-16T10:35:23,557 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/structure/bonds.c -o build/temp.linux-armv7l-cpython-311/src/biotite/structure/bonds.o 2023-09-16T10:35:23,935 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:35:23,935 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:35:23,936 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:35:23,937 from src/biotite/structure/bonds.c:1167: 2023-09-16T10:35:23,938 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:35:23,939 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:35:23,940 | ^~~~~~~ 2023-09-16T10:35:24,904 src/biotite/structure/bonds.c: In function ‘__pyx_pf_7biotite_9structure_5bonds_8BondList_54_remove_redundant_bonds’: 2023-09-16T10:35:24,933 src/biotite/structure/bonds.c:32102:66: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:35:24,934 32102 | __pyx_t_17 = __pyx_f_7biotite_9structure_5bonds__in_array(((__pyx_t_7biotite_9structure_5bonds_uint32 *)(*((__pyx_t_7biotite_9structure_5bonds_ptr *) ( /* dim=0 */ (__pyx_v_ptrs_v.data + __pyx_t_15 * __pyx_v_ptrs_v.strides[0]) )))), __pyx_v_i2, (*((int *) ( /* dim=0 */ (__pyx_v_array_len_v.data + __pyx_t_16 * __pyx_v_array_len_v.strides[0]) )))); if (unlikely(__pyx_t_17 == ((int)-1) && PyErr_Occurred())) __PYX_ERR(0, 1200, __pyx_L4_error) 2023-09-16T10:35:24,934 | ^ 2023-09-16T10:35:24,963 src/biotite/structure/bonds.c:32144:30: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:35:24,964 32144 | __pyx_v_array_ptr = ((__pyx_t_7biotite_9structure_5bonds_uint32 *)(*((__pyx_t_7biotite_9structure_5bonds_ptr *) ( /* dim=0 */ (__pyx_v_ptrs_v.data + __pyx_t_16 * __pyx_v_ptrs_v.strides[0]) )))); 2023-09-16T10:35:24,965 | ^ 2023-09-16T10:35:24,993 src/biotite/structure/bonds.c:32200:137: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 2023-09-16T10:35:24,994 32200 | *((__pyx_t_7biotite_9structure_5bonds_ptr *) ( /* dim=0 */ (__pyx_v_ptrs_v.data + __pyx_t_16 * __pyx_v_ptrs_v.strides[0]) )) = ((__pyx_t_7biotite_9structure_5bonds_ptr)__pyx_v_array_ptr); 2023-09-16T10:35:24,995 | ^ 2023-09-16T10:35:25,023 src/biotite/structure/bonds.c:32238:15: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:35:25,024 32238 | free(((int *)(*((__pyx_t_7biotite_9structure_5bonds_ptr *) ( /* dim=0 */ (__pyx_v_ptrs_v.data + __pyx_t_13 * __pyx_v_ptrs_v.strides[0]) ))))); 2023-09-16T10:35:25,025 | ^ 2023-09-16T10:35:25,061 src/biotite/structure/bonds.c:32291:17: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:35:25,062 32291 | free(((int *)(*((__pyx_t_7biotite_9structure_5bonds_ptr *) ( /* dim=0 */ (__pyx_v_ptrs_v.data + __pyx_t_13 * __pyx_v_ptrs_v.strides[0]) ))))); 2023-09-16T10:35:25,062 | ^ 2023-09-16T10:35:25,814 src/biotite/structure/bonds.c: In function ‘__pyx_pf_7biotite_9structure_5bonds_4_to_bool_mask’: 2023-09-16T10:35:25,849 src/biotite/structure/bonds.c:37706:28: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘__pyx_t_7biotite_9structure_5bonds_uint32’ {aka ‘long unsigned int’} [-Wsign-compare] 2023-09-16T10:35:25,850 37706 | __pyx_t_1 = (__pyx_t_5 != __pyx_v_length); 2023-09-16T10:35:25,851 | ^~ 2023-09-16T10:37:07,563 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/structure/bonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/structure/bonds.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:37:07,775 building 'biotite.structure.celllist' extension 2023-09-16T10:37:07,776 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/structure/celllist.c -o build/temp.linux-armv7l-cpython-311/src/biotite/structure/celllist.o 2023-09-16T10:37:08,205 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:37:08,206 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:37:08,207 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:37:08,208 from src/biotite/structure/celllist.c:1167: 2023-09-16T10:37:08,208 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:37:08,209 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:37:08,210 | ^~~~~~~ 2023-09-16T10:37:08,647 src/biotite/structure/celllist.c: In function ‘__pyx_pf_7biotite_9structure_8celllist_8CellList___cinit__’: 2023-09-16T10:37:08,666 src/biotite/structure/celllist.c:21734:27: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:37:08,667 21734 | __pyx_v_cell_ptr = ((int *)(*((__pyx_t_7biotite_9structure_8celllist_ptr *) ( /* dim=2 */ (( /* dim=1 */ (( /* dim=0 */ (__pyx_v_self->_cells.data + __pyx_t_20 * __pyx_v_self->_cells.strides[0]) ) + __pyx_t_18 * __pyx_v_self->_cells.strides[1]) ) + __pyx_t_19 * __pyx_v_self->_cells.strides[2]) )))); 2023-09-16T10:37:08,667 | ^ 2023-09-16T10:37:08,687 src/biotite/structure/celllist.c:21832:280: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 2023-09-16T10:37:08,688 21832 | *((__pyx_t_7biotite_9structure_8celllist_ptr *) ( /* dim=2 */ (( /* dim=1 */ (( /* dim=0 */ (__pyx_v_self->_cells.data + __pyx_t_20 * __pyx_v_self->_cells.strides[0]) ) + __pyx_t_18 * __pyx_v_self->_cells.strides[1]) ) + __pyx_t_19 * __pyx_v_self->_cells.strides[2]) )) = ((__pyx_t_7biotite_9structure_8celllist_ptr)__pyx_v_cell_ptr); 2023-09-16T10:37:08,690 | ^ 2023-09-16T10:37:08,851 src/biotite/structure/celllist.c: In function ‘__pyx_f_7biotite_9structure_8celllist_8CellList__find_adjacent_atoms’: 2023-09-16T10:37:08,874 src/biotite/structure/celllist.c:24901:37: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:37:08,874 24901 | __pyx_v_list_ptr = ((int *)(*((__pyx_t_7biotite_9structure_8celllist_ptr *) ( /* dim=2 */ (( /* dim=1 */ (( /* dim=0 */ (__pyx_v_cells.data + __pyx_t_7 * __pyx_v_cells.strides[0]) ) + __pyx_t_6 * __pyx_v_cells.strides[1]) ) + __pyx_t_19 * __pyx_v_cells.strides[2]) )))); 2023-09-16T10:37:08,875 | ^ 2023-09-16T10:37:09,020 src/biotite/structure/celllist.c: In function ‘__pyx_f_7biotite_9structure_8celllist_deallocate_ptrs’: 2023-09-16T10:37:09,044 src/biotite/structure/celllist.c:27327:29: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:37:09,045 27327 | __pyx_v_cell_ptr = ((int *)(*((__pyx_t_7biotite_9structure_8celllist_ptr *) ( /* dim=2 */ (( /* dim=1 */ (( /* dim=0 */ (__pyx_v_ptrs.data + __pyx_t_10 * __pyx_v_ptrs.strides[0]) ) + __pyx_t_11 * __pyx_v_ptrs.strides[1]) ) + __pyx_t_12 * __pyx_v_ptrs.strides[2]) )))); 2023-09-16T10:37:09,046 | ^ 2023-09-16T10:37:48,230 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/structure/celllist.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/structure/celllist.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:37:48,378 building 'biotite.structure.io.pdb.hybrid36' extension 2023-09-16T10:37:48,379 creating build/temp.linux-armv7l-cpython-311/src/biotite/structure/io 2023-09-16T10:37:48,380 creating build/temp.linux-armv7l-cpython-311/src/biotite/structure/io/pdb 2023-09-16T10:37:48,381 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/structure/io/pdb/hybrid36.c -o build/temp.linux-armv7l-cpython-311/src/biotite/structure/io/pdb/hybrid36.o 2023-09-16T10:38:11,482 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/structure/io/pdb/hybrid36.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdb/hybrid36.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:38:11,612 building 'biotite.structure.io.mmtf.convertfile' extension 2023-09-16T10:38:11,613 creating build/temp.linux-armv7l-cpython-311/src/biotite/structure/io/mmtf 2023-09-16T10:38:11,614 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/structure/io/mmtf/convertfile.c -o build/temp.linux-armv7l-cpython-311/src/biotite/structure/io/mmtf/convertfile.o 2023-09-16T10:38:11,998 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:38:11,999 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:38:12,000 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:38:12,000 from src/biotite/structure/io/mmtf/convertfile.c:1167: 2023-09-16T10:38:12,001 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:38:12,002 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:38:12,003 | ^~~~~~~ 2023-09-16T10:39:07,290 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/structure/io/mmtf/convertfile.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf/convertfile.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:39:07,465 building 'biotite.structure.io.mmtf.encode' extension 2023-09-16T10:39:07,466 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/structure/io/mmtf/encode.c -o build/temp.linux-armv7l-cpython-311/src/biotite/structure/io/mmtf/encode.o 2023-09-16T10:39:07,851 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:39:07,852 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:39:07,853 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:39:07,854 from src/biotite/structure/io/mmtf/encode.c:1167: 2023-09-16T10:39:07,855 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:39:07,856 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:39:07,856 | ^~~~~~~ 2023-09-16T10:39:39,360 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/structure/io/mmtf/encode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf/encode.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:39:39,505 building 'biotite.structure.io.mmtf.convertarray' extension 2023-09-16T10:39:39,506 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/structure/io/mmtf/convertarray.c -o build/temp.linux-armv7l-cpython-311/src/biotite/structure/io/mmtf/convertarray.o 2023-09-16T10:39:39,888 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:39:39,889 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:39:39,889 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:39:39,890 from src/biotite/structure/io/mmtf/convertarray.c:1167: 2023-09-16T10:39:39,891 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:39:39,892 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:39:39,893 | ^~~~~~~ 2023-09-16T10:40:06,547 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/structure/io/mmtf/convertarray.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf/convertarray.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:40:06,664 building 'biotite.structure.io.mmtf.decode' extension 2023-09-16T10:40:06,665 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/structure/io/mmtf/decode.c -o build/temp.linux-armv7l-cpython-311/src/biotite/structure/io/mmtf/decode.o 2023-09-16T10:40:07,048 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:40:07,048 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:40:07,049 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:40:07,050 from src/biotite/structure/io/mmtf/decode.c:1167: 2023-09-16T10:40:07,051 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:40:07,052 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:40:07,053 | ^~~~~~~ 2023-09-16T10:40:42,209 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/structure/io/mmtf/decode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf/decode.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:40:42,352 building 'biotite.sequence.codec' extension 2023-09-16T10:40:42,353 creating build/temp.linux-armv7l-cpython-311/src/biotite/sequence 2023-09-16T10:40:42,353 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/sequence/codec.c -o build/temp.linux-armv7l-cpython-311/src/biotite/sequence/codec.o 2023-09-16T10:40:42,753 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:40:42,754 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:40:42,755 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:40:42,755 from src/biotite/sequence/codec.c:1167: 2023-09-16T10:40:42,756 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:40:42,757 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:40:42,758 | ^~~~~~~ 2023-09-16T10:41:19,521 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/sequence/codec.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/sequence/codec.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:41:19,665 building 'biotite.sequence.phylo.upgma' extension 2023-09-16T10:41:19,666 creating build/temp.linux-armv7l-cpython-311/src/biotite/sequence/phylo 2023-09-16T10:41:19,667 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/sequence/phylo/upgma.c -o build/temp.linux-armv7l-cpython-311/src/biotite/sequence/phylo/upgma.o 2023-09-16T10:41:20,047 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:41:20,048 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:41:20,049 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:41:20,049 from src/biotite/sequence/phylo/upgma.c:1167: 2023-09-16T10:41:20,050 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:41:20,051 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:41:20,052 | ^~~~~~~ 2023-09-16T10:41:44,242 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/sequence/phylo/upgma.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/sequence/phylo/upgma.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:41:44,374 building 'biotite.sequence.phylo.tree' extension 2023-09-16T10:41:44,374 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/sequence/phylo/tree.c -o build/temp.linux-armv7l-cpython-311/src/biotite/sequence/phylo/tree.o 2023-09-16T10:41:44,757 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:41:44,758 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:41:44,759 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:41:44,760 from src/biotite/sequence/phylo/tree.c:1167: 2023-09-16T10:41:44,760 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:41:44,761 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:41:44,762 | ^~~~~~~ 2023-09-16T10:42:21,809 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/sequence/phylo/tree.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/sequence/phylo/tree.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:42:21,945 building 'biotite.sequence.phylo.nj' extension 2023-09-16T10:42:21,946 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/sequence/phylo/nj.c -o build/temp.linux-armv7l-cpython-311/src/biotite/sequence/phylo/nj.o 2023-09-16T10:42:22,326 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:42:22,327 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:42:22,328 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:42:22,329 from src/biotite/sequence/phylo/nj.c:1167: 2023-09-16T10:42:22,329 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:42:22,330 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:42:22,331 | ^~~~~~~ 2023-09-16T10:42:49,345 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/sequence/phylo/nj.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/sequence/phylo/nj.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:42:49,479 building 'biotite.sequence.align.banded' extension 2023-09-16T10:42:49,481 creating build/temp.linux-armv7l-cpython-311/src/biotite/sequence/align 2023-09-16T10:42:49,481 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/sequence/align/banded.c -o build/temp.linux-armv7l-cpython-311/src/biotite/sequence/align/banded.o 2023-09-16T10:42:49,873 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:42:49,874 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:42:49,875 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:42:49,875 from src/biotite/sequence/align/banded.c:1167: 2023-09-16T10:42:49,876 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:42:49,877 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:42:49,878 | ^~~~~~~ 2023-09-16T10:44:10,115 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/sequence/align/banded.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/sequence/align/banded.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:44:10,300 building 'biotite.sequence.align.multiple' extension 2023-09-16T10:44:10,301 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/sequence/align/multiple.c -o build/temp.linux-armv7l-cpython-311/src/biotite/sequence/align/multiple.o 2023-09-16T10:44:10,914 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:44:10,915 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:44:10,916 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:44:10,917 from src/biotite/sequence/align/multiple.c:1167: 2023-09-16T10:44:10,918 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:44:10,918 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:44:10,919 | ^~~~~~~ 2023-09-16T10:45:30,063 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/sequence/align/multiple.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/sequence/align/multiple.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:45:30,250 building 'biotite.sequence.align.localungapped' extension 2023-09-16T10:45:30,251 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/sequence/align/localungapped.c -o build/temp.linux-armv7l-cpython-311/src/biotite/sequence/align/localungapped.o 2023-09-16T10:45:30,644 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:45:30,646 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:45:30,647 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:45:30,647 from src/biotite/sequence/align/localungapped.c:1167: 2023-09-16T10:45:30,648 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:45:30,649 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:45:30,650 | ^~~~~~~ 2023-09-16T10:46:10,783 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/sequence/align/localungapped.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/sequence/align/localungapped.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:46:10,940 building 'biotite.sequence.align.tracetable' extension 2023-09-16T10:46:10,941 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/sequence/align/tracetable.c -o build/temp.linux-armv7l-cpython-311/src/biotite/sequence/align/tracetable.o 2023-09-16T10:46:11,329 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:46:11,330 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:46:11,331 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:46:11,331 from src/biotite/sequence/align/tracetable.c:1167: 2023-09-16T10:46:11,332 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:46:11,333 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:46:11,334 | ^~~~~~~ 2023-09-16T10:46:33,974 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/sequence/align/tracetable.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/sequence/align/tracetable.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:46:34,111 building 'biotite.sequence.align.pairwise' extension 2023-09-16T10:46:34,112 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/sequence/align/pairwise.c -o build/temp.linux-armv7l-cpython-311/src/biotite/sequence/align/pairwise.o 2023-09-16T10:46:34,511 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:46:34,512 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:46:34,513 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:46:34,514 from src/biotite/sequence/align/pairwise.c:1167: 2023-09-16T10:46:34,514 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:46:34,515 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:46:34,516 | ^~~~~~~ 2023-09-16T10:47:58,208 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/sequence/align/pairwise.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/sequence/align/pairwise.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:47:58,403 building 'biotite.sequence.align.localgapped' extension 2023-09-16T10:47:58,404 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/sequence/align/localgapped.c -o build/temp.linux-armv7l-cpython-311/src/biotite/sequence/align/localgapped.o 2023-09-16T10:47:58,857 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:47:58,858 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:47:58,859 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:47:58,860 from src/biotite/sequence/align/localgapped.c:1167: 2023-09-16T10:47:58,861 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:47:58,862 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:47:58,862 | ^~~~~~~ 2023-09-16T10:50:44,528 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/sequence/align/localgapped.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/sequence/align/localgapped.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:50:44,822 building 'biotite.sequence.align.kmertable' extension 2023-09-16T10:50:44,823 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/sequence/align/kmertable.c -o build/temp.linux-armv7l-cpython-311/src/biotite/sequence/align/kmertable.o 2023-09-16T10:50:45,267 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:50:45,268 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:50:45,269 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:50:45,270 from src/biotite/sequence/align/kmertable.c:1167: 2023-09-16T10:50:45,271 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:50:45,272 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:50:45,273 | ^~~~~~~ 2023-09-16T10:50:46,061 src/biotite/sequence/align/kmertable.c: In function ‘__pyx_pf_7biotite_8sequence_5align_9kmertable_9KmerTable_8from_positions’: 2023-09-16T10:50:46,084 src/biotite/sequence/align/kmertable.c:25504:148: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 2023-09-16T10:50:46,085 25504 | *((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr *) ( /* dim=0 */ (__pyx_v_ptr_array.data + __pyx_t_9 * __pyx_v_ptr_array.strides[0]) )) = ((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr)__pyx_v_kmer_ptr); 2023-09-16T10:50:46,086 | ^ 2023-09-16T10:50:46,105 src/biotite/sequence/align/kmertable.c: In function ‘__pyx_pf_7biotite_8sequence_5align_9kmertable_9KmerTable_10match_table’: 2023-09-16T10:50:46,128 src/biotite/sequence/align/kmertable.c:26006:32: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:50:46,129 26006 | __pyx_v_self_kmer_ptr = ((__pyx_t_7biotite_8sequence_5align_9kmertable_uint32 *)(*((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr *) ( /* dim=0 */ (__pyx_v_self_ptr_array.data + __pyx_t_12 * __pyx_v_self_ptr_array.strides[0]) )))); 2023-09-16T10:50:46,130 | ^ 2023-09-16T10:50:46,151 src/biotite/sequence/align/kmertable.c:26016:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:50:46,152 26016 | __pyx_v_other_kmer_ptr = ((__pyx_t_7biotite_8sequence_5align_9kmertable_uint32 *)(*((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr *) ( /* dim=0 */ (__pyx_v_other_ptr_array.data + __pyx_t_12 * __pyx_v_other_ptr_array.strides[0]) )))); 2023-09-16T10:50:46,153 | ^ 2023-09-16T10:50:46,179 src/biotite/sequence/align/kmertable.c:26241:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:50:46,180 26241 | __pyx_v_other_kmer_ptr = ((__pyx_t_7biotite_8sequence_5align_9kmertable_uint32 *)(*((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr *) ( /* dim=0 */ (__pyx_v_other_ptr_array.data + __pyx_t_12 * __pyx_v_other_ptr_array.strides[0]) )))); 2023-09-16T10:50:46,181 | ^ 2023-09-16T10:50:46,205 src/biotite/sequence/align/kmertable.c:26340:36: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:50:46,206 26340 | __pyx_v_self_kmer_ptr = ((__pyx_t_7biotite_8sequence_5align_9kmertable_uint32 *)(*((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr *) ( /* dim=0 */ (__pyx_v_self_ptr_array.data + __pyx_t_14 * __pyx_v_self_ptr_array.strides[0]) )))); 2023-09-16T10:50:46,207 | ^ 2023-09-16T10:50:46,237 src/biotite/sequence/align/kmertable.c: In function ‘__pyx_pf_7biotite_8sequence_5align_9kmertable_9KmerTable_12match’: 2023-09-16T10:50:46,261 src/biotite/sequence/align/kmertable.c:27163:29: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:50:46,262 27163 | __pyx_v_kmer_ptr = ((__pyx_t_7biotite_8sequence_5align_9kmertable_uint32 *)(*((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr *) ( /* dim=0 */ (__pyx_v_ptr_array.data + __pyx_t_16 * __pyx_v_ptr_array.strides[0]) )))); 2023-09-16T10:50:46,262 | ^ 2023-09-16T10:50:46,291 src/biotite/sequence/align/kmertable.c:27456:31: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:50:46,292 27456 | __pyx_v_kmer_ptr = ((__pyx_t_7biotite_8sequence_5align_9kmertable_uint32 *)(*((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr *) ( /* dim=0 */ (__pyx_v_ptr_array.data + __pyx_t_17 * __pyx_v_ptr_array.strides[0]) )))); 2023-09-16T10:50:46,293 | ^ 2023-09-16T10:50:46,310 src/biotite/sequence/align/kmertable.c: In function ‘__pyx_pf_7biotite_8sequence_5align_9kmertable_9KmerTable_14get_kmers’: 2023-09-16T10:50:46,334 src/biotite/sequence/align/kmertable.c:27890:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:50:46,335 27890 | __pyx_t_12 = (((__pyx_t_7biotite_8sequence_5align_9kmertable_uint32 *)(*((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr *) ( /* dim=0 */ (__pyx_v_ptr_array.data + __pyx_t_11 * __pyx_v_ptr_array.strides[0]) )))) != NULL); 2023-09-16T10:50:46,336 | ^ 2023-09-16T10:50:46,342 src/biotite/sequence/align/kmertable.c: In function ‘__pyx_pf_7biotite_8sequence_5align_9kmertable_9KmerTable_16__getitem__’: 2023-09-16T10:50:46,367 src/biotite/sequence/align/kmertable.c:28163:23: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:50:46,368 28163 | __pyx_v_kmer_ptr = ((__pyx_t_7biotite_8sequence_5align_9kmertable_uint32 *)(*((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr *) ( /* dim=0 */ (__pyx_v_self->_ptr_array.data + __pyx_t_8 * __pyx_v_self->_ptr_array.strides[0]) )))); 2023-09-16T10:50:46,369 | ^ 2023-09-16T10:50:46,414 src/biotite/sequence/align/kmertable.c: In function ‘__pyx_pf_7biotite_8sequence_5align_9kmertable_9KmerTable_28_equals’: 2023-09-16T10:50:46,439 src/biotite/sequence/align/kmertable.c:29198:30: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:50:46,440 29198 | __pyx_v_self_kmer_ptr = ((__pyx_t_7biotite_8sequence_5align_9kmertable_uint32 *)(*((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr *) ( /* dim=0 */ (__pyx_v_self_ptr_array.data + __pyx_t_9 * __pyx_v_self_ptr_array.strides[0]) )))); 2023-09-16T10:50:46,441 | ^ 2023-09-16T10:50:46,478 src/biotite/sequence/align/kmertable.c:29217:31: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:50:46,479 29217 | __pyx_v_other_kmer_ptr = ((__pyx_t_7biotite_8sequence_5align_9kmertable_uint32 *)(*((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr *) ( /* dim=0 */ (__pyx_v_other_ptr_array.data + __pyx_t_9 * __pyx_v_other_ptr_array.strides[0]) )))); 2023-09-16T10:50:46,480 | ^ 2023-09-16T10:50:46,534 src/biotite/sequence/align/kmertable.c: In function ‘__pyx_pf_7biotite_8sequence_5align_9kmertable_9KmerTable_34__getstate__’: 2023-09-16T10:50:46,560 src/biotite/sequence/align/kmertable.c:30108:25: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:50:46,561 30108 | __pyx_v_kmer_ptr = ((__pyx_t_7biotite_8sequence_5align_9kmertable_uint32 *)(*((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr *) ( /* dim=0 */ (__pyx_v_ptr_array.data + __pyx_t_10 * __pyx_v_ptr_array.strides[0]) )))); 2023-09-16T10:50:46,562 | ^ 2023-09-16T10:50:46,580 src/biotite/sequence/align/kmertable.c: In function ‘__pyx_pf_7biotite_8sequence_5align_9kmertable_9KmerTable_36__setstate__’: 2023-09-16T10:50:46,607 src/biotite/sequence/align/kmertable.c:30572:150: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 2023-09-16T10:50:46,608 30572 | *((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr *) ( /* dim=0 */ (__pyx_v_ptr_array.data + __pyx_t_7 * __pyx_v_ptr_array.strides[0]) )) = ((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr)__pyx_v_kmer_ptr); 2023-09-16T10:50:46,609 | ^ 2023-09-16T10:50:46,631 src/biotite/sequence/align/kmertable.c: In function ‘__pyx_pf_7biotite_8sequence_5align_9kmertable_9KmerTable_40_count_kmers’: 2023-09-16T10:50:46,659 src/biotite/sequence/align/kmertable.c:30850:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_7biotite_8sequence_5align_9kmertable_uint32’ {aka ‘long unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-09-16T10:50:46,660 30850 | for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { 2023-09-16T10:50:46,660 | ^ 2023-09-16T10:50:46,671 src/biotite/sequence/align/kmertable.c: In function ‘__pyx_pf_7biotite_8sequence_5align_9kmertable_9KmerTable_42_count_table_entries’: 2023-09-16T10:50:46,698 src/biotite/sequence/align/kmertable.c:31092:25: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:50:46,699 31092 | __pyx_v_kmer_ptr = ((__pyx_t_7biotite_8sequence_5align_9kmertable_int64 *)(*((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr *) ( /* dim=0 */ (__pyx_v_other_ptr_array.data + __pyx_t_5 * __pyx_v_other_ptr_array.strides[0]) )))); 2023-09-16T10:50:46,700 | ^ 2023-09-16T10:50:46,709 src/biotite/sequence/align/kmertable.c: In function ‘__pyx_pf_7biotite_8sequence_5align_9kmertable_9KmerTable_44_init_c_arrays’: 2023-09-16T10:50:46,737 src/biotite/sequence/align/kmertable.c:31341:150: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 2023-09-16T10:50:46,738 31341 | *((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr *) ( /* dim=0 */ (__pyx_v_ptr_array.data + __pyx_t_5 * __pyx_v_ptr_array.strides[0]) )) = ((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr)__pyx_v_kmer_ptr); 2023-09-16T10:50:46,739 | ^ 2023-09-16T10:50:46,770 src/biotite/sequence/align/kmertable.c: In function ‘__pyx_pf_7biotite_8sequence_5align_9kmertable_9KmerTable_46_add_kmers’: 2023-09-16T10:50:46,798 src/biotite/sequence/align/kmertable.c:31653:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_7biotite_8sequence_5align_9kmertable_uint32’ {aka ‘long unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-09-16T10:50:46,798 31653 | for (__pyx_t_8 = 0; __pyx_t_8 < __pyx_t_2; __pyx_t_8+=1) { 2023-09-16T10:50:46,799 | ^ 2023-09-16T10:50:46,826 src/biotite/sequence/align/kmertable.c:31685:27: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:50:46,827 31685 | __pyx_v_kmer_ptr = ((__pyx_t_7biotite_8sequence_5align_9kmertable_uint32 *)(*((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr *) ( /* dim=0 */ (__pyx_v_ptr_array.data + __pyx_t_10 * __pyx_v_ptr_array.strides[0]) )))); 2023-09-16T10:50:46,828 | ^ 2023-09-16T10:50:46,838 src/biotite/sequence/align/kmertable.c: In function ‘__pyx_pf_7biotite_8sequence_5align_9kmertable_9KmerTable_48_append_entries’: 2023-09-16T10:50:46,866 src/biotite/sequence/align/kmertable.c:31937:30: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:50:46,867 31937 | __pyx_v_self_kmer_ptr = ((__pyx_t_7biotite_8sequence_5align_9kmertable_uint32 *)(*((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr *) ( /* dim=0 */ (__pyx_v_self_ptr_array.data + __pyx_t_5 * __pyx_v_self_ptr_array.strides[0]) )))); 2023-09-16T10:50:46,867 | ^ 2023-09-16T10:50:46,894 src/biotite/sequence/align/kmertable.c:31947:31: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:50:46,895 31947 | __pyx_v_other_kmer_ptr = ((__pyx_t_7biotite_8sequence_5align_9kmertable_uint32 *)(*((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr *) ( /* dim=0 */ (__pyx_v_other_ptr_array.data + __pyx_t_5 * __pyx_v_other_ptr_array.strides[0]) )))); 2023-09-16T10:50:46,896 | ^ 2023-09-16T10:50:46,965 src/biotite/sequence/align/kmertable.c: In function ‘__pyx_f_7biotite_8sequence_5align_9kmertable__deallocate_ptrs’: 2023-09-16T10:50:46,994 src/biotite/sequence/align/kmertable.c:33115:17: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2023-09-16T10:50:46,995 33115 | PyMem_Free(((__pyx_t_7biotite_8sequence_5align_9kmertable_uint32 *)(*((__pyx_t_7biotite_8sequence_5align_9kmertable_ptr *) ( /* dim=0 */ (__pyx_v_ptrs.data + __pyx_t_4 * __pyx_v_ptrs.strides[0]) ))))); 2023-09-16T10:50:46,996 | ^ 2023-09-16T10:51:44,965 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/sequence/align/kmertable.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/sequence/align/kmertable.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:51:45,127 building 'biotite.sequence.align.kmeralphabet' extension 2023-09-16T10:51:45,128 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/sequence/align/kmeralphabet.c -o build/temp.linux-armv7l-cpython-311/src/biotite/sequence/align/kmeralphabet.o 2023-09-16T10:51:45,517 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:51:45,518 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:51:45,519 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:51:45,520 from src/biotite/sequence/align/kmeralphabet.c:1167: 2023-09-16T10:51:45,521 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:51:45,522 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:51:45,522 | ^~~~~~~ 2023-09-16T10:51:46,269 src/biotite/sequence/align/kmeralphabet.c: In function ‘__pyx_pf_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_38_create_continuous_kmers’: 2023-09-16T10:51:46,292 src/biotite/sequence/align/kmeralphabet.c:25836:26: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2023-09-16T10:51:46,293 25836 | __pyx_t_5 = (__pyx_t_3 < ((unsigned int)__pyx_v_k)); 2023-09-16T10:51:46,294 | ^ 2023-09-16T10:51:46,329 src/biotite/sequence/align/kmeralphabet.c: In function ‘__pyx_pf_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_40_create_continuous_kmers’: 2023-09-16T10:51:46,353 src/biotite/sequence/align/kmeralphabet.c:26503:26: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2023-09-16T10:51:46,354 26503 | __pyx_t_5 = (__pyx_t_3 < ((unsigned int)__pyx_v_k)); 2023-09-16T10:51:46,354 | ^ 2023-09-16T10:51:46,390 src/biotite/sequence/align/kmeralphabet.c: In function ‘__pyx_pf_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_42_create_continuous_kmers’: 2023-09-16T10:51:46,414 src/biotite/sequence/align/kmeralphabet.c:27170:26: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2023-09-16T10:51:46,415 27170 | __pyx_t_5 = (__pyx_t_3 < ((unsigned int)__pyx_v_k)); 2023-09-16T10:51:46,416 | ^ 2023-09-16T10:51:46,451 src/biotite/sequence/align/kmeralphabet.c: In function ‘__pyx_pf_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_44_create_continuous_kmers’: 2023-09-16T10:51:46,477 src/biotite/sequence/align/kmeralphabet.c:27837:26: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2023-09-16T10:51:46,478 27837 | __pyx_t_5 = (__pyx_t_3 < ((unsigned int)__pyx_v_k)); 2023-09-16T10:51:46,479 | ^ 2023-09-16T10:51:46,627 src/biotite/sequence/align/kmeralphabet.c: In function ‘__pyx_pf_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_48_create_spaced_kmers’: 2023-09-16T10:51:46,654 src/biotite/sequence/align/kmeralphabet.c:29567:26: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2023-09-16T10:51:46,654 29567 | __pyx_t_6 = (__pyx_t_4 < ((unsigned int)__pyx_v_max_offset)); 2023-09-16T10:51:46,655 | ^ 2023-09-16T10:51:46,690 src/biotite/sequence/align/kmeralphabet.c: In function ‘__pyx_pf_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_50_create_spaced_kmers’: 2023-09-16T10:51:46,717 src/biotite/sequence/align/kmeralphabet.c:30129:26: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2023-09-16T10:51:46,718 30129 | __pyx_t_6 = (__pyx_t_4 < ((unsigned int)__pyx_v_max_offset)); 2023-09-16T10:51:46,718 | ^ 2023-09-16T10:51:46,753 src/biotite/sequence/align/kmeralphabet.c: In function ‘__pyx_pf_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_52_create_spaced_kmers’: 2023-09-16T10:51:46,781 src/biotite/sequence/align/kmeralphabet.c:30691:26: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2023-09-16T10:51:46,782 30691 | __pyx_t_6 = (__pyx_t_4 < ((unsigned int)__pyx_v_max_offset)); 2023-09-16T10:51:46,782 | ^ 2023-09-16T10:51:46,818 src/biotite/sequence/align/kmeralphabet.c: In function ‘__pyx_pf_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_54_create_spaced_kmers’: 2023-09-16T10:51:46,846 src/biotite/sequence/align/kmeralphabet.c:31253:26: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2023-09-16T10:51:46,847 31253 | __pyx_t_6 = (__pyx_t_4 < ((unsigned int)__pyx_v_max_offset)); 2023-09-16T10:51:46,847 | ^ 2023-09-16T10:52:43,099 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/sequence/align/kmeralphabet.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/sequence/align/kmeralphabet.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:52:43,264 building 'biotite.sequence.align.kmersimilarity' extension 2023-09-16T10:52:43,265 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/biotite/sequence/align/kmersimilarity.c -o build/temp.linux-armv7l-cpython-311/src/biotite/sequence/align/kmersimilarity.o 2023-09-16T10:52:43,648 In file included from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-16T10:52:43,649 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:52:43,650 from /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-16T10:52:43,651 from src/biotite/sequence/align/kmersimilarity.c:1167: 2023-09-16T10:52:43,652 /tmp/pip-build-env-dn35cn22/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-16T10:52:43,653 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-16T10:52:43,654 | ^~~~~~~ 2023-09-16T10:53:12,550 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/biotite/sequence/align/kmersimilarity.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biotite/sequence/align/kmersimilarity.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:53:12,702 installing to build/bdist.linux-armv7l/wheel 2023-09-16T10:53:12,703 running install 2023-09-16T10:53:12,728 running install_lib 2023-09-16T10:53:12,734 creating build/bdist.linux-armv7l 2023-09-16T10:53:12,735 creating build/bdist.linux-armv7l/wheel 2023-09-16T10:53:12,736 creating build/bdist.linux-armv7l/wheel/biotite 2023-09-16T10:53:12,737 copying build/lib.linux-armv7l-cpython-311/biotite/visualize.py -> build/bdist.linux-armv7l/wheel/biotite 2023-09-16T10:53:12,744 creating build/bdist.linux-armv7l/wheel/biotite/application 2023-09-16T10:53:12,746 creating build/bdist.linux-armv7l/wheel/biotite/application/dssp 2023-09-16T10:53:12,748 copying build/lib.linux-armv7l-cpython-311/biotite/application/dssp/app.py -> build/bdist.linux-armv7l/wheel/biotite/application/dssp 2023-09-16T10:53:12,751 copying build/lib.linux-armv7l-cpython-311/biotite/application/dssp/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/application/dssp 2023-09-16T10:53:12,754 creating build/bdist.linux-armv7l/wheel/biotite/application/autodock 2023-09-16T10:53:12,755 copying build/lib.linux-armv7l-cpython-311/biotite/application/autodock/app.py -> build/bdist.linux-armv7l/wheel/biotite/application/autodock 2023-09-16T10:53:12,760 copying build/lib.linux-armv7l-cpython-311/biotite/application/autodock/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/application/autodock 2023-09-16T10:53:12,763 creating build/bdist.linux-armv7l/wheel/biotite/application/muscle 2023-09-16T10:53:12,764 copying build/lib.linux-armv7l-cpython-311/biotite/application/muscle/app5.py -> build/bdist.linux-armv7l/wheel/biotite/application/muscle 2023-09-16T10:53:12,769 copying build/lib.linux-armv7l-cpython-311/biotite/application/muscle/app3.py -> build/bdist.linux-armv7l/wheel/biotite/application/muscle 2023-09-16T10:53:12,772 copying build/lib.linux-armv7l-cpython-311/biotite/application/muscle/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/application/muscle 2023-09-16T10:53:12,775 creating build/bdist.linux-armv7l/wheel/biotite/application/viennarna 2023-09-16T10:53:12,776 copying build/lib.linux-armv7l-cpython-311/biotite/application/viennarna/util.py -> build/bdist.linux-armv7l/wheel/biotite/application/viennarna 2023-09-16T10:53:12,779 copying build/lib.linux-armv7l-cpython-311/biotite/application/viennarna/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/application/viennarna 2023-09-16T10:53:12,781 copying build/lib.linux-armv7l-cpython-311/biotite/application/viennarna/rnaplot.py -> build/bdist.linux-armv7l/wheel/biotite/application/viennarna 2023-09-16T10:53:12,784 copying build/lib.linux-armv7l-cpython-311/biotite/application/viennarna/rnaalifold.py -> build/bdist.linux-armv7l/wheel/biotite/application/viennarna 2023-09-16T10:53:12,787 copying build/lib.linux-armv7l-cpython-311/biotite/application/viennarna/rnafold.py -> build/bdist.linux-armv7l/wheel/biotite/application/viennarna 2023-09-16T10:53:12,790 creating build/bdist.linux-armv7l/wheel/biotite/application/clustalo 2023-09-16T10:53:12,791 copying build/lib.linux-armv7l-cpython-311/biotite/application/clustalo/app.py -> build/bdist.linux-armv7l/wheel/biotite/application/clustalo 2023-09-16T10:53:12,794 copying build/lib.linux-armv7l-cpython-311/biotite/application/clustalo/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/application/clustalo 2023-09-16T10:53:12,797 creating build/bdist.linux-armv7l/wheel/biotite/application/mafft 2023-09-16T10:53:12,798 copying build/lib.linux-armv7l-cpython-311/biotite/application/mafft/app.py -> build/bdist.linux-armv7l/wheel/biotite/application/mafft 2023-09-16T10:53:12,801 copying build/lib.linux-armv7l-cpython-311/biotite/application/mafft/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/application/mafft 2023-09-16T10:53:12,802 copying build/lib.linux-armv7l-cpython-311/biotite/application/msaapp.py -> build/bdist.linux-armv7l/wheel/biotite/application 2023-09-16T10:53:12,807 creating build/bdist.linux-armv7l/wheel/biotite/application/sra 2023-09-16T10:53:12,808 copying build/lib.linux-armv7l-cpython-311/biotite/application/sra/app.py -> build/bdist.linux-armv7l/wheel/biotite/application/sra 2023-09-16T10:53:12,811 copying build/lib.linux-armv7l-cpython-311/biotite/application/sra/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/application/sra 2023-09-16T10:53:12,813 copying build/lib.linux-armv7l-cpython-311/biotite/application/util.py -> build/bdist.linux-armv7l/wheel/biotite/application 2023-09-16T10:53:12,816 copying build/lib.linux-armv7l-cpython-311/biotite/application/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/application 2023-09-16T10:53:12,820 creating build/bdist.linux-armv7l/wheel/biotite/application/blast 2023-09-16T10:53:12,822 copying build/lib.linux-armv7l-cpython-311/biotite/application/blast/alignment.py -> build/bdist.linux-armv7l/wheel/biotite/application/blast 2023-09-16T10:53:12,824 copying build/lib.linux-armv7l-cpython-311/biotite/application/blast/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/application/blast 2023-09-16T10:53:12,826 copying build/lib.linux-armv7l-cpython-311/biotite/application/blast/webapp.py -> build/bdist.linux-armv7l/wheel/biotite/application/blast 2023-09-16T10:53:12,829 copying build/lib.linux-armv7l-cpython-311/biotite/application/localapp.py -> build/bdist.linux-armv7l/wheel/biotite/application 2023-09-16T10:53:12,832 creating build/bdist.linux-armv7l/wheel/biotite/application/tantan 2023-09-16T10:53:12,834 copying build/lib.linux-armv7l-cpython-311/biotite/application/tantan/app.py -> build/bdist.linux-armv7l/wheel/biotite/application/tantan 2023-09-16T10:53:12,836 copying build/lib.linux-armv7l-cpython-311/biotite/application/tantan/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/application/tantan 2023-09-16T10:53:12,838 copying build/lib.linux-armv7l-cpython-311/biotite/application/webapp.py -> build/bdist.linux-armv7l/wheel/biotite/application 2023-09-16T10:53:12,841 copying build/lib.linux-armv7l-cpython-311/biotite/application/application.py -> build/bdist.linux-armv7l/wheel/biotite/application 2023-09-16T10:53:12,844 creating build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:12,846 creating build/bdist.linux-armv7l/wheel/biotite/structure/graphics 2023-09-16T10:53:12,848 copying build/lib.linux-armv7l-cpython-311/biotite/structure/graphics/atoms.py -> build/bdist.linux-armv7l/wheel/biotite/structure/graphics 2023-09-16T10:53:12,850 copying build/lib.linux-armv7l-cpython-311/biotite/structure/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/structure/graphics 2023-09-16T10:53:12,853 copying build/lib.linux-armv7l-cpython-311/biotite/structure/graphics/rna.py -> build/bdist.linux-armv7l/wheel/biotite/structure/graphics 2023-09-16T10:53:12,855 copying build/lib.linux-armv7l-cpython-311/biotite/structure/charges.c -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:12,899 copying build/lib.linux-armv7l-cpython-311/biotite/structure/chains.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:12,903 copying build/lib.linux-armv7l-cpython-311/biotite/structure/geometry.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:12,908 copying build/lib.linux-armv7l-cpython-311/biotite/structure/hbond.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:12,913 copying build/lib.linux-armv7l-cpython-311/biotite/structure/sasa.c -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:12,955 copying build/lib.linux-armv7l-cpython-311/biotite/structure/pseudoknots.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:12,962 copying build/lib.linux-armv7l-cpython-311/biotite/structure/sse.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:12,965 copying build/lib.linux-armv7l-cpython-311/biotite/structure/charges.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:12,998 copying build/lib.linux-armv7l-cpython-311/biotite/structure/box.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:13,002 copying build/lib.linux-armv7l-cpython-311/biotite/structure/filter.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:13,006 copying build/lib.linux-armv7l-cpython-311/biotite/structure/superimpose.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:13,010 copying build/lib.linux-armv7l-cpython-311/biotite/structure/resutil.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:13,012 copying build/lib.linux-armv7l-cpython-311/biotite/structure/bonds.c -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:13,095 copying build/lib.linux-armv7l-cpython-311/biotite/structure/rdf.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:13,098 copying build/lib.linux-armv7l-cpython-311/biotite/structure/compare.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:13,100 copying build/lib.linux-armv7l-cpython-311/biotite/structure/transform.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:13,104 copying build/lib.linux-armv7l-cpython-311/biotite/structure/sasa.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:13,131 copying build/lib.linux-armv7l-cpython-311/biotite/structure/bonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:13,171 creating build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:13,172 copying build/lib.linux-armv7l-cpython-311/biotite/structure/info/residues.msgpack -> build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:15,113 copying build/lib.linux-armv7l-cpython-311/biotite/structure/info/carbohydrates.json -> build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:15,143 copying build/lib.linux-armv7l-cpython-311/biotite/structure/info/amino_acids.json -> build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:15,174 copying build/lib.linux-armv7l-cpython-311/biotite/structure/info/link_types.msgpack -> build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:15,253 copying build/lib.linux-armv7l-cpython-311/biotite/structure/info/intra_bonds.msgpack -> build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:15,792 copying build/lib.linux-armv7l-cpython-311/biotite/structure/info/masses.py -> build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:15,795 copying build/lib.linux-armv7l-cpython-311/biotite/structure/info/nucleotides.py -> build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:15,798 copying build/lib.linux-armv7l-cpython-311/biotite/structure/info/bonds.py -> build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:15,801 copying build/lib.linux-armv7l-cpython-311/biotite/structure/info/amino_acids.py -> build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:15,804 copying build/lib.linux-armv7l-cpython-311/biotite/structure/info/standardize.py -> build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:15,811 copying build/lib.linux-armv7l-cpython-311/biotite/structure/info/carbohydrates.py -> build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:15,814 copying build/lib.linux-armv7l-cpython-311/biotite/structure/info/atom_masses.json -> build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:15,817 copying build/lib.linux-armv7l-cpython-311/biotite/structure/info/residue_masses.msgpack -> build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:15,836 copying build/lib.linux-armv7l-cpython-311/biotite/structure/info/atoms.py -> build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:15,838 copying build/lib.linux-armv7l-cpython-311/biotite/structure/info/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:15,840 copying build/lib.linux-armv7l-cpython-311/biotite/structure/info/nucleotides.json -> build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:15,843 copying build/lib.linux-armv7l-cpython-311/biotite/structure/info/residue_names.msgpack -> build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:15,918 copying build/lib.linux-armv7l-cpython-311/biotite/structure/info/radii.py -> build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:15,939 copying build/lib.linux-armv7l-cpython-311/biotite/structure/info/misc.py -> build/bdist.linux-armv7l/wheel/biotite/structure/info 2023-09-16T10:53:15,991 copying build/lib.linux-armv7l-cpython-311/biotite/structure/density.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:16,168 creating build/bdist.linux-armv7l/wheel/biotite/structure/io 2023-09-16T10:53:16,169 creating build/bdist.linux-armv7l/wheel/biotite/structure/io/xtc 2023-09-16T10:53:16,170 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/xtc/file.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/xtc 2023-09-16T10:53:16,172 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/xtc/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/xtc 2023-09-16T10:53:16,175 creating build/bdist.linux-armv7l/wheel/biotite/structure/io/gro 2023-09-16T10:53:16,176 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/gro/file.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/gro 2023-09-16T10:53:16,179 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/gro/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/gro 2023-09-16T10:53:16,181 creating build/bdist.linux-armv7l/wheel/biotite/structure/io/netcdf 2023-09-16T10:53:16,182 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/netcdf/file.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/netcdf 2023-09-16T10:53:16,185 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/netcdf/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/netcdf 2023-09-16T10:53:16,188 creating build/bdist.linux-armv7l/wheel/biotite/structure/io/mol 2023-09-16T10:53:16,189 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/mol/file.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/mol 2023-09-16T10:53:16,191 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/mol/convert.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/mol 2023-09-16T10:53:16,194 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/mol/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/mol 2023-09-16T10:53:16,196 creating build/bdist.linux-armv7l/wheel/biotite/structure/io/dcd 2023-09-16T10:53:16,197 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/dcd/file.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/dcd 2023-09-16T10:53:16,200 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/dcd/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/dcd 2023-09-16T10:53:16,202 creating build/bdist.linux-armv7l/wheel/biotite/structure/io/pdbx 2023-09-16T10:53:16,203 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdbx/file.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/pdbx 2023-09-16T10:53:16,206 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdbx/convert.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/pdbx 2023-09-16T10:53:16,211 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/pdbx 2023-09-16T10:53:16,214 creating build/bdist.linux-armv7l/wheel/biotite/structure/io/pdb 2023-09-16T10:53:16,215 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdb/file.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/pdb 2023-09-16T10:53:16,226 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdb/convert.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/pdb 2023-09-16T10:53:16,228 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdb/hybrid36.c -> build/bdist.linux-armv7l/wheel/biotite/structure/io/pdb 2023-09-16T10:53:16,260 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdb/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/pdb 2023-09-16T10:53:16,263 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdb/hybrid36.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/structure/io/pdb 2023-09-16T10:53:16,282 creating build/bdist.linux-armv7l/wheel/biotite/structure/io/pdbqt 2023-09-16T10:53:16,283 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdbqt/file.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/pdbqt 2023-09-16T10:53:16,287 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdbqt/convert.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/pdbqt 2023-09-16T10:53:16,290 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/pdbqt/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/pdbqt 2023-09-16T10:53:16,293 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/trajfile.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io 2023-09-16T10:53:16,296 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/general.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io 2023-09-16T10:53:16,300 creating build/bdist.linux-armv7l/wheel/biotite/structure/io/tng 2023-09-16T10:53:16,301 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/tng/file.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/tng 2023-09-16T10:53:16,305 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/tng/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/tng 2023-09-16T10:53:16,308 creating build/bdist.linux-armv7l/wheel/biotite/structure/io/trr 2023-09-16T10:53:16,309 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/trr/file.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/trr 2023-09-16T10:53:16,313 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/trr/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/trr 2023-09-16T10:53:16,318 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io 2023-09-16T10:53:16,321 creating build/bdist.linux-armv7l/wheel/biotite/structure/io/mmtf 2023-09-16T10:53:16,322 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf/convertfile.c -> build/bdist.linux-armv7l/wheel/biotite/structure/io/mmtf 2023-09-16T10:53:16,379 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf/encode.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/structure/io/mmtf 2023-09-16T10:53:16,400 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf/assembly.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/mmtf 2023-09-16T10:53:16,404 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf/file.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/mmtf 2023-09-16T10:53:16,408 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf/convertfile.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/structure/io/mmtf 2023-09-16T10:53:16,438 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf/encode.c -> build/bdist.linux-armv7l/wheel/biotite/structure/io/mmtf 2023-09-16T10:53:16,487 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/mmtf 2023-09-16T10:53:16,491 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf/convertarray.c -> build/bdist.linux-armv7l/wheel/biotite/structure/io/mmtf 2023-09-16T10:53:16,516 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf/decode.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/structure/io/mmtf 2023-09-16T10:53:16,545 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf/decode.c -> build/bdist.linux-armv7l/wheel/biotite/structure/io/mmtf 2023-09-16T10:53:16,606 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/mmtf/convertarray.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/structure/io/mmtf 2023-09-16T10:53:16,618 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/ctab.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io 2023-09-16T10:53:16,622 creating build/bdist.linux-armv7l/wheel/biotite/structure/io/npz 2023-09-16T10:53:16,623 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/npz/file.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/npz 2023-09-16T10:53:16,627 copying build/lib.linux-armv7l-cpython-311/biotite/structure/io/npz/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/structure/io/npz 2023-09-16T10:53:16,630 copying build/lib.linux-armv7l-cpython-311/biotite/structure/celllist.c -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:16,676 copying build/lib.linux-armv7l-cpython-311/biotite/structure/dotbracket.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:16,680 copying build/lib.linux-armv7l-cpython-311/biotite/structure/util.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:16,683 copying build/lib.linux-armv7l-cpython-311/biotite/structure/atoms.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:16,689 copying build/lib.linux-armv7l-cpython-311/biotite/structure/residues.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:16,696 copying build/lib.linux-armv7l-cpython-311/biotite/structure/basepairs.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:16,700 copying build/lib.linux-armv7l-cpython-311/biotite/structure/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:16,703 copying build/lib.linux-armv7l-cpython-311/biotite/structure/molecules.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:16,706 copying build/lib.linux-armv7l-cpython-311/biotite/structure/celllist.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:16,726 copying build/lib.linux-armv7l-cpython-311/biotite/structure/integrity.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:16,729 copying build/lib.linux-armv7l-cpython-311/biotite/structure/mechanics.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:16,732 copying build/lib.linux-armv7l-cpython-311/biotite/structure/error.py -> build/bdist.linux-armv7l/wheel/biotite/structure 2023-09-16T10:53:16,735 copying build/lib.linux-armv7l-cpython-311/biotite/file.py -> build/bdist.linux-armv7l/wheel/biotite 2023-09-16T10:53:16,738 creating build/bdist.linux-armv7l/wheel/biotite/sequence 2023-09-16T10:53:16,739 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/sequence.py -> build/bdist.linux-armv7l/wheel/biotite/sequence 2023-09-16T10:53:16,742 creating build/bdist.linux-armv7l/wheel/biotite/sequence/graphics 2023-09-16T10:53:16,743 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/logo.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics 2023-09-16T10:53:16,746 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/plasmid.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics 2023-09-16T10:53:16,749 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/colorschemes.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics 2023-09-16T10:53:16,752 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/features.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics 2023-09-16T10:53:16,755 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/dendrogram.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics 2023-09-16T10:53:16,758 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/alignment.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics 2023-09-16T10:53:16,761 creating build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,762 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes/jalview_buried.json -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,766 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes/sunset.json -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,769 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes/ocean.json -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,772 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes/wither.json -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,775 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes/pb_flower.json -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,778 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes/jalview_taylor.json -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,780 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes/clustalx_protein.json -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,783 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes/clustalx_dna.json -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,785 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes/rainbow_dna.json -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,788 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes/rainbow_protein.json -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,790 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes/jalview_prop_turn.json -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,793 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes/blossom.json -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,795 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes/flower.json -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,798 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes/jalview_zappo.json -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,801 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,803 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes/jalview_prop_helix.json -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,806 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes/autumn.json -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,810 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes/spring.json -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,813 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/color_schemes/jalview_prop_strand.json -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics/color_schemes 2023-09-16T10:53:16,815 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/graphics 2023-09-16T10:53:16,817 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/seqtypes.py -> build/bdist.linux-armv7l/wheel/biotite/sequence 2023-09-16T10:53:16,820 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/codec.c -> build/bdist.linux-armv7l/wheel/biotite/sequence 2023-09-16T10:53:16,861 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/alphabet.py -> build/bdist.linux-armv7l/wheel/biotite/sequence 2023-09-16T10:53:16,865 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/codon_tables.txt -> build/bdist.linux-armv7l/wheel/biotite/sequence 2023-09-16T10:53:16,872 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/codon.py -> build/bdist.linux-armv7l/wheel/biotite/sequence 2023-09-16T10:53:16,874 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/search.py -> build/bdist.linux-armv7l/wheel/biotite/sequence 2023-09-16T10:53:16,877 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/annotation.py -> build/bdist.linux-armv7l/wheel/biotite/sequence 2023-09-16T10:53:16,880 creating build/bdist.linux-armv7l/wheel/biotite/sequence/io 2023-09-16T10:53:16,881 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/io/general.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/io 2023-09-16T10:53:16,884 creating build/bdist.linux-armv7l/wheel/biotite/sequence/io/gff 2023-09-16T10:53:16,885 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/io/gff/file.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/io/gff 2023-09-16T10:53:16,888 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/io/gff/convert.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/io/gff 2023-09-16T10:53:16,891 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/io/gff/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/io/gff 2023-09-16T10:53:16,893 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/io/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/io 2023-09-16T10:53:16,895 creating build/bdist.linux-armv7l/wheel/biotite/sequence/io/fasta 2023-09-16T10:53:16,896 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/io/fasta/file.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/io/fasta 2023-09-16T10:53:16,899 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/io/fasta/convert.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/io/fasta 2023-09-16T10:53:16,902 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/io/fasta/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/io/fasta 2023-09-16T10:53:16,905 creating build/bdist.linux-armv7l/wheel/biotite/sequence/io/fastq 2023-09-16T10:53:16,906 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/io/fastq/file.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/io/fastq 2023-09-16T10:53:16,909 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/io/fastq/convert.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/io/fastq 2023-09-16T10:53:16,911 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/io/fastq/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/io/fastq 2023-09-16T10:53:16,913 creating build/bdist.linux-armv7l/wheel/biotite/sequence/io/genbank 2023-09-16T10:53:16,914 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/io/genbank/sequence.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/io/genbank 2023-09-16T10:53:16,917 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/io/genbank/file.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/io/genbank 2023-09-16T10:53:16,920 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/io/genbank/annotation.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/io/genbank 2023-09-16T10:53:16,923 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/io/genbank/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/io/genbank 2023-09-16T10:53:16,925 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/io/genbank/metadata.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/io/genbank 2023-09-16T10:53:16,927 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/codec.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/sequence 2023-09-16T10:53:16,955 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/profile.py -> build/bdist.linux-armv7l/wheel/biotite/sequence 2023-09-16T10:53:16,960 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/sequence 2023-09-16T10:53:16,964 creating build/bdist.linux-armv7l/wheel/biotite/sequence/phylo 2023-09-16T10:53:16,966 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/phylo/upgma.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/sequence/phylo 2023-09-16T10:53:16,987 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/phylo/upgma.c -> build/bdist.linux-armv7l/wheel/biotite/sequence/phylo 2023-09-16T10:53:17,032 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/phylo/tree.c -> build/bdist.linux-armv7l/wheel/biotite/sequence/phylo 2023-09-16T10:53:17,075 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/phylo/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/phylo 2023-09-16T10:53:17,078 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/phylo/tree.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/sequence/phylo 2023-09-16T10:53:17,099 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/phylo/nj.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/sequence/phylo 2023-09-16T10:53:17,116 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/phylo/nj.c -> build/bdist.linux-armv7l/wheel/biotite/sequence/phylo 2023-09-16T10:53:17,156 creating build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:17,157 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/banded.c -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:17,230 creating build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,231 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM410.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,235 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/GONNET.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,238 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM100.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,240 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM480.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,242 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM62_13p.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,245 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM440.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,248 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM45.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,250 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,253 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM40.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,256 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM280.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,259 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM40.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,261 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,264 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM85.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,266 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM190.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,269 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM380.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,271 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,273 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM430.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,275 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM50_13p.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,278 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,280 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM260.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,282 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM80.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,284 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,287 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM75.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,289 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM420.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,291 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM360.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,293 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM200.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,296 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,298 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM270.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,300 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM310.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,303 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM350.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,305 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM490.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,307 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM240.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,309 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM55.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,312 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM300.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,314 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM210.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,317 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM110.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,319 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM220.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,321 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM130.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,324 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM170.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,326 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM50.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,329 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM30.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,331 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM60.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,333 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM230.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,336 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM60.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,338 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUMN.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,340 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,342 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM62.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,344 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM340.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,347 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM35.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,349 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM10.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,351 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM150.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,353 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM20.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,356 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/NUC.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,358 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM90.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,360 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM500.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,362 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM70.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,364 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM90.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,366 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM100.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,368 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,371 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM400.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,373 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,375 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,377 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM290.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,380 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM470.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,382 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM70.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,384 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM250.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,387 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,389 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM30.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,391 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM390.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,394 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM50.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,396 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,398 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/IDENTITY.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,400 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,402 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM140.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,405 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM460.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,407 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM180.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,409 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/MATCH.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,411 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,414 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM450.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,416 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM80.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,418 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM330.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,421 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,423 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM160.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,425 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM320.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,427 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,430 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM120.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,432 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/BLOSUM65.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,434 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/PAM370.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,436 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix_data/DAYHOFF.mat -> build/bdist.linux-armv7l/wheel/biotite/sequence/align/matrix_data 2023-09-16T10:53:17,439 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/multiple.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:17,476 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/pairwise.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:17,516 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/multiple.c -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:17,604 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/kmertable.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:17,633 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/matrix.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:17,638 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/localungapped.c -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:17,709 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/alignment.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:17,712 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/kmersimilarity.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:17,729 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/tracetable.c -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:17,769 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/tracetable.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:17,786 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/localungapped.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:17,807 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/pairwise.c -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:17,887 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:17,892 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/localgapped.c -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:18,012 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/kmertable.c -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:18,063 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/kmeralphabet.c -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:18,112 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/kmersimilarity.c -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:18,145 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/localgapped.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:18,222 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/kmeralphabet.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:18,249 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/statistics.py -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:18,253 copying build/lib.linux-armv7l-cpython-311/biotite/sequence/align/banded.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biotite/sequence/align 2023-09-16T10:53:18,289 creating build/bdist.linux-armv7l/wheel/biotite/database 2023-09-16T10:53:18,291 creating build/bdist.linux-armv7l/wheel/biotite/database/rcsb 2023-09-16T10:53:18,293 copying build/lib.linux-armv7l-cpython-311/biotite/database/rcsb/download.py -> build/bdist.linux-armv7l/wheel/biotite/database/rcsb 2023-09-16T10:53:18,297 copying build/lib.linux-armv7l-cpython-311/biotite/database/rcsb/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/database/rcsb 2023-09-16T10:53:18,299 copying build/lib.linux-armv7l-cpython-311/biotite/database/rcsb/query.py -> build/bdist.linux-armv7l/wheel/biotite/database/rcsb 2023-09-16T10:53:18,303 creating build/bdist.linux-armv7l/wheel/biotite/database/pubchem 2023-09-16T10:53:18,305 copying build/lib.linux-armv7l-cpython-311/biotite/database/pubchem/download.py -> build/bdist.linux-armv7l/wheel/biotite/database/pubchem 2023-09-16T10:53:18,308 copying build/lib.linux-armv7l-cpython-311/biotite/database/pubchem/throttle.py -> build/bdist.linux-armv7l/wheel/biotite/database/pubchem 2023-09-16T10:53:18,311 copying build/lib.linux-armv7l-cpython-311/biotite/database/pubchem/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/database/pubchem 2023-09-16T10:53:18,314 copying build/lib.linux-armv7l-cpython-311/biotite/database/pubchem/error.py -> build/bdist.linux-armv7l/wheel/biotite/database/pubchem 2023-09-16T10:53:18,316 copying build/lib.linux-armv7l-cpython-311/biotite/database/pubchem/query.py -> build/bdist.linux-armv7l/wheel/biotite/database/pubchem 2023-09-16T10:53:18,319 copying build/lib.linux-armv7l-cpython-311/biotite/database/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/database 2023-09-16T10:53:18,322 creating build/bdist.linux-armv7l/wheel/biotite/database/uniprot 2023-09-16T10:53:18,324 copying build/lib.linux-armv7l-cpython-311/biotite/database/uniprot/download.py -> build/bdist.linux-armv7l/wheel/biotite/database/uniprot 2023-09-16T10:53:18,326 copying build/lib.linux-armv7l-cpython-311/biotite/database/uniprot/check.py -> build/bdist.linux-armv7l/wheel/biotite/database/uniprot 2023-09-16T10:53:18,328 copying build/lib.linux-armv7l-cpython-311/biotite/database/uniprot/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/database/uniprot 2023-09-16T10:53:18,330 copying build/lib.linux-armv7l-cpython-311/biotite/database/uniprot/query.py -> build/bdist.linux-armv7l/wheel/biotite/database/uniprot 2023-09-16T10:53:18,333 creating build/bdist.linux-armv7l/wheel/biotite/database/entrez 2023-09-16T10:53:18,334 copying build/lib.linux-armv7l-cpython-311/biotite/database/entrez/dbnames.py -> build/bdist.linux-armv7l/wheel/biotite/database/entrez 2023-09-16T10:53:18,336 copying build/lib.linux-armv7l-cpython-311/biotite/database/entrez/download.py -> build/bdist.linux-armv7l/wheel/biotite/database/entrez 2023-09-16T10:53:18,339 copying build/lib.linux-armv7l-cpython-311/biotite/database/entrez/check.py -> build/bdist.linux-armv7l/wheel/biotite/database/entrez 2023-09-16T10:53:18,342 copying build/lib.linux-armv7l-cpython-311/biotite/database/entrez/__init__.py -> build/bdist.linux-armv7l/wheel/biotite/database/entrez 2023-09-16T10:53:18,344 copying build/lib.linux-armv7l-cpython-311/biotite/database/entrez/query.py -> build/bdist.linux-armv7l/wheel/biotite/database/entrez 2023-09-16T10:53:18,347 copying build/lib.linux-armv7l-cpython-311/biotite/database/error.py -> build/bdist.linux-armv7l/wheel/biotite/database 2023-09-16T10:53:18,349 copying build/lib.linux-armv7l-cpython-311/biotite/__init__.py -> build/bdist.linux-armv7l/wheel/biotite 2023-09-16T10:53:18,352 copying build/lib.linux-armv7l-cpython-311/biotite/temp.py -> build/bdist.linux-armv7l/wheel/biotite 2023-09-16T10:53:18,355 copying build/lib.linux-armv7l-cpython-311/biotite/copyable.py -> build/bdist.linux-armv7l/wheel/biotite 2023-09-16T10:53:18,357 running install_egg_info 2023-09-16T10:53:18,363 Copying src/biotite.egg-info to build/bdist.linux-armv7l/wheel/biotite-0.38.0-py3.11.egg-info 2023-09-16T10:53:18,381 running install_scripts 2023-09-16T10:53:18,431 creating build/bdist.linux-armv7l/wheel/biotite-0.38.0.dist-info/WHEEL 2023-09-16T10:53:18,434 creating '/tmp/pip-wheel-kjbdinpx/.tmp-4e5zwv9u/biotite-0.38.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-16T10:53:18,437 adding 'biotite/__init__.py' 2023-09-16T10:53:18,439 adding 'biotite/copyable.py' 2023-09-16T10:53:18,442 adding 'biotite/file.py' 2023-09-16T10:53:18,443 adding 'biotite/temp.py' 2023-09-16T10:53:18,446 adding 'biotite/visualize.py' 2023-09-16T10:53:18,448 adding 'biotite/application/__init__.py' 2023-09-16T10:53:18,451 adding 'biotite/application/application.py' 2023-09-16T10:53:18,453 adding 'biotite/application/localapp.py' 2023-09-16T10:53:18,455 adding 'biotite/application/msaapp.py' 2023-09-16T10:53:18,458 adding 'biotite/application/util.py' 2023-09-16T10:53:18,460 adding 'biotite/application/webapp.py' 2023-09-16T10:53:18,462 adding 'biotite/application/autodock/__init__.py' 2023-09-16T10:53:18,465 adding 'biotite/application/autodock/app.py' 2023-09-16T10:53:18,468 adding 'biotite/application/blast/__init__.py' 2023-09-16T10:53:18,470 adding 'biotite/application/blast/alignment.py' 2023-09-16T10:53:18,472 adding 'biotite/application/blast/webapp.py' 2023-09-16T10:53:18,475 adding 'biotite/application/clustalo/__init__.py' 2023-09-16T10:53:18,477 adding 'biotite/application/clustalo/app.py' 2023-09-16T10:53:18,479 adding 'biotite/application/dssp/__init__.py' 2023-09-16T10:53:18,481 adding 'biotite/application/dssp/app.py' 2023-09-16T10:53:18,483 adding 'biotite/application/mafft/__init__.py' 2023-09-16T10:53:18,485 adding 'biotite/application/mafft/app.py' 2023-09-16T10:53:18,487 adding 'biotite/application/muscle/__init__.py' 2023-09-16T10:53:18,489 adding 'biotite/application/muscle/app3.py' 2023-09-16T10:53:18,491 adding 'biotite/application/muscle/app5.py' 2023-09-16T10:53:18,494 adding 'biotite/application/sra/__init__.py' 2023-09-16T10:53:18,496 adding 'biotite/application/sra/app.py' 2023-09-16T10:53:18,498 adding 'biotite/application/tantan/__init__.py' 2023-09-16T10:53:18,500 adding 'biotite/application/tantan/app.py' 2023-09-16T10:53:18,502 adding 'biotite/application/viennarna/__init__.py' 2023-09-16T10:53:18,504 adding 'biotite/application/viennarna/rnaalifold.py' 2023-09-16T10:53:18,506 adding 'biotite/application/viennarna/rnafold.py' 2023-09-16T10:53:18,508 adding 'biotite/application/viennarna/rnaplot.py' 2023-09-16T10:53:18,509 adding 'biotite/application/viennarna/util.py' 2023-09-16T10:53:18,511 adding 'biotite/database/__init__.py' 2023-09-16T10:53:18,513 adding 'biotite/database/error.py' 2023-09-16T10:53:18,515 adding 'biotite/database/entrez/__init__.py' 2023-09-16T10:53:18,517 adding 'biotite/database/entrez/check.py' 2023-09-16T10:53:18,518 adding 'biotite/database/entrez/dbnames.py' 2023-09-16T10:53:18,520 adding 'biotite/database/entrez/download.py' 2023-09-16T10:53:18,522 adding 'biotite/database/entrez/query.py' 2023-09-16T10:53:18,524 adding 'biotite/database/pubchem/__init__.py' 2023-09-16T10:53:18,525 adding 'biotite/database/pubchem/download.py' 2023-09-16T10:53:18,527 adding 'biotite/database/pubchem/error.py' 2023-09-16T10:53:18,530 adding 'biotite/database/pubchem/query.py' 2023-09-16T10:53:18,532 adding 'biotite/database/pubchem/throttle.py' 2023-09-16T10:53:18,533 adding 'biotite/database/rcsb/__init__.py' 2023-09-16T10:53:18,535 adding 'biotite/database/rcsb/download.py' 2023-09-16T10:53:18,539 adding 'biotite/database/rcsb/query.py' 2023-09-16T10:53:18,541 adding 'biotite/database/uniprot/__init__.py' 2023-09-16T10:53:18,543 adding 'biotite/database/uniprot/check.py' 2023-09-16T10:53:18,544 adding 'biotite/database/uniprot/download.py' 2023-09-16T10:53:18,546 adding 'biotite/database/uniprot/query.py' 2023-09-16T10:53:18,548 adding 'biotite/sequence/__init__.py' 2023-09-16T10:53:18,550 adding 'biotite/sequence/alphabet.py' 2023-09-16T10:53:18,554 adding 'biotite/sequence/annotation.py' 2023-09-16T10:53:18,658 adding 'biotite/sequence/codec.c' 2023-09-16T10:53:18,924 adding 'biotite/sequence/codec.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:18,936 adding 'biotite/sequence/codon.py' 2023-09-16T10:53:18,938 adding 'biotite/sequence/codon_tables.txt' 2023-09-16T10:53:18,940 adding 'biotite/sequence/profile.py' 2023-09-16T10:53:18,942 adding 'biotite/sequence/search.py' 2023-09-16T10:53:18,944 adding 'biotite/sequence/seqtypes.py' 2023-09-16T10:53:18,947 adding 'biotite/sequence/sequence.py' 2023-09-16T10:53:18,949 adding 'biotite/sequence/align/__init__.py' 2023-09-16T10:53:18,952 adding 'biotite/sequence/align/alignment.py' 2023-09-16T10:53:19,114 adding 'biotite/sequence/align/banded.c' 2023-09-16T10:53:19,520 adding 'biotite/sequence/align/banded.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:19,667 adding 'biotite/sequence/align/kmeralphabet.c' 2023-09-16T10:53:20,039 adding 'biotite/sequence/align/kmeralphabet.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:20,147 adding 'biotite/sequence/align/kmersimilarity.c' 2023-09-16T10:53:20,370 adding 'biotite/sequence/align/kmersimilarity.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:20,521 adding 'biotite/sequence/align/kmertable.c' 2023-09-16T10:53:20,905 adding 'biotite/sequence/align/kmertable.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:21,208 adding 'biotite/sequence/align/localgapped.c' 2023-09-16T10:53:22,012 adding 'biotite/sequence/align/localgapped.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:22,164 adding 'biotite/sequence/align/localungapped.c' 2023-09-16T10:53:22,444 adding 'biotite/sequence/align/localungapped.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:22,457 adding 'biotite/sequence/align/matrix.py' 2023-09-16T10:53:22,615 adding 'biotite/sequence/align/multiple.c' 2023-09-16T10:53:23,103 adding 'biotite/sequence/align/multiple.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:23,301 adding 'biotite/sequence/align/pairwise.c' 2023-09-16T10:53:23,762 adding 'biotite/sequence/align/pairwise.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:23,786 adding 'biotite/sequence/align/statistics.py' 2023-09-16T10:53:23,875 adding 'biotite/sequence/align/tracetable.c' 2023-09-16T10:53:24,083 adding 'biotite/sequence/align/tracetable.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:24,094 adding 'biotite/sequence/align/matrix_data/BLOSUM100.mat' 2023-09-16T10:53:24,095 adding 'biotite/sequence/align/matrix_data/BLOSUM30.mat' 2023-09-16T10:53:24,097 adding 'biotite/sequence/align/matrix_data/BLOSUM35.mat' 2023-09-16T10:53:24,098 adding 'biotite/sequence/align/matrix_data/BLOSUM40.mat' 2023-09-16T10:53:24,100 adding 'biotite/sequence/align/matrix_data/BLOSUM45.mat' 2023-09-16T10:53:24,101 adding 'biotite/sequence/align/matrix_data/BLOSUM50.mat' 2023-09-16T10:53:24,102 adding 'biotite/sequence/align/matrix_data/BLOSUM50_13p.mat' 2023-09-16T10:53:24,104 adding 'biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat' 2023-09-16T10:53:24,105 adding 'biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat' 2023-09-16T10:53:24,107 adding 'biotite/sequence/align/matrix_data/BLOSUM55.mat' 2023-09-16T10:53:24,108 adding 'biotite/sequence/align/matrix_data/BLOSUM60.mat' 2023-09-16T10:53:24,110 adding 'biotite/sequence/align/matrix_data/BLOSUM62.mat' 2023-09-16T10:53:24,111 adding 'biotite/sequence/align/matrix_data/BLOSUM62_13p.mat' 2023-09-16T10:53:24,113 adding 'biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat' 2023-09-16T10:53:24,114 adding 'biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat' 2023-09-16T10:53:24,115 adding 'biotite/sequence/align/matrix_data/BLOSUM65.mat' 2023-09-16T10:53:24,117 adding 'biotite/sequence/align/matrix_data/BLOSUM70.mat' 2023-09-16T10:53:24,118 adding 'biotite/sequence/align/matrix_data/BLOSUM75.mat' 2023-09-16T10:53:24,120 adding 'biotite/sequence/align/matrix_data/BLOSUM80.mat' 2023-09-16T10:53:24,121 adding 'biotite/sequence/align/matrix_data/BLOSUM85.mat' 2023-09-16T10:53:24,123 adding 'biotite/sequence/align/matrix_data/BLOSUM90.mat' 2023-09-16T10:53:24,124 adding 'biotite/sequence/align/matrix_data/BLOSUMN.mat' 2023-09-16T10:53:24,126 adding 'biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat' 2023-09-16T10:53:24,127 adding 'biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat' 2023-09-16T10:53:24,128 adding 'biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat' 2023-09-16T10:53:24,130 adding 'biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat' 2023-09-16T10:53:24,131 adding 'biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat' 2023-09-16T10:53:24,133 adding 'biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat' 2023-09-16T10:53:24,134 adding 'biotite/sequence/align/matrix_data/DAYHOFF.mat' 2023-09-16T10:53:24,136 adding 'biotite/sequence/align/matrix_data/GONNET.mat' 2023-09-16T10:53:24,137 adding 'biotite/sequence/align/matrix_data/IDENTITY.mat' 2023-09-16T10:53:24,139 adding 'biotite/sequence/align/matrix_data/MATCH.mat' 2023-09-16T10:53:24,140 adding 'biotite/sequence/align/matrix_data/NUC.mat' 2023-09-16T10:53:24,142 adding 'biotite/sequence/align/matrix_data/PAM10.mat' 2023-09-16T10:53:24,143 adding 'biotite/sequence/align/matrix_data/PAM100.mat' 2023-09-16T10:53:24,145 adding 'biotite/sequence/align/matrix_data/PAM110.mat' 2023-09-16T10:53:24,146 adding 'biotite/sequence/align/matrix_data/PAM120.mat' 2023-09-16T10:53:24,148 adding 'biotite/sequence/align/matrix_data/PAM130.mat' 2023-09-16T10:53:24,149 adding 'biotite/sequence/align/matrix_data/PAM140.mat' 2023-09-16T10:53:24,151 adding 'biotite/sequence/align/matrix_data/PAM150.mat' 2023-09-16T10:53:24,152 adding 'biotite/sequence/align/matrix_data/PAM160.mat' 2023-09-16T10:53:24,154 adding 'biotite/sequence/align/matrix_data/PAM170.mat' 2023-09-16T10:53:24,156 adding 'biotite/sequence/align/matrix_data/PAM180.mat' 2023-09-16T10:53:24,157 adding 'biotite/sequence/align/matrix_data/PAM190.mat' 2023-09-16T10:53:24,159 adding 'biotite/sequence/align/matrix_data/PAM20.mat' 2023-09-16T10:53:24,161 adding 'biotite/sequence/align/matrix_data/PAM200.mat' 2023-09-16T10:53:24,162 adding 'biotite/sequence/align/matrix_data/PAM210.mat' 2023-09-16T10:53:24,164 adding 'biotite/sequence/align/matrix_data/PAM220.mat' 2023-09-16T10:53:24,165 adding 'biotite/sequence/align/matrix_data/PAM230.mat' 2023-09-16T10:53:24,167 adding 'biotite/sequence/align/matrix_data/PAM240.mat' 2023-09-16T10:53:24,168 adding 'biotite/sequence/align/matrix_data/PAM250.mat' 2023-09-16T10:53:24,170 adding 'biotite/sequence/align/matrix_data/PAM260.mat' 2023-09-16T10:53:24,172 adding 'biotite/sequence/align/matrix_data/PAM270.mat' 2023-09-16T10:53:24,173 adding 'biotite/sequence/align/matrix_data/PAM280.mat' 2023-09-16T10:53:24,175 adding 'biotite/sequence/align/matrix_data/PAM290.mat' 2023-09-16T10:53:24,176 adding 'biotite/sequence/align/matrix_data/PAM30.mat' 2023-09-16T10:53:24,178 adding 'biotite/sequence/align/matrix_data/PAM300.mat' 2023-09-16T10:53:24,179 adding 'biotite/sequence/align/matrix_data/PAM310.mat' 2023-09-16T10:53:24,181 adding 'biotite/sequence/align/matrix_data/PAM320.mat' 2023-09-16T10:53:24,182 adding 'biotite/sequence/align/matrix_data/PAM330.mat' 2023-09-16T10:53:24,184 adding 'biotite/sequence/align/matrix_data/PAM340.mat' 2023-09-16T10:53:24,186 adding 'biotite/sequence/align/matrix_data/PAM350.mat' 2023-09-16T10:53:24,187 adding 'biotite/sequence/align/matrix_data/PAM360.mat' 2023-09-16T10:53:24,189 adding 'biotite/sequence/align/matrix_data/PAM370.mat' 2023-09-16T10:53:24,190 adding 'biotite/sequence/align/matrix_data/PAM380.mat' 2023-09-16T10:53:24,192 adding 'biotite/sequence/align/matrix_data/PAM390.mat' 2023-09-16T10:53:24,194 adding 'biotite/sequence/align/matrix_data/PAM40.mat' 2023-09-16T10:53:24,195 adding 'biotite/sequence/align/matrix_data/PAM400.mat' 2023-09-16T10:53:24,197 adding 'biotite/sequence/align/matrix_data/PAM410.mat' 2023-09-16T10:53:24,199 adding 'biotite/sequence/align/matrix_data/PAM420.mat' 2023-09-16T10:53:24,200 adding 'biotite/sequence/align/matrix_data/PAM430.mat' 2023-09-16T10:53:24,202 adding 'biotite/sequence/align/matrix_data/PAM440.mat' 2023-09-16T10:53:24,203 adding 'biotite/sequence/align/matrix_data/PAM450.mat' 2023-09-16T10:53:24,204 adding 'biotite/sequence/align/matrix_data/PAM460.mat' 2023-09-16T10:53:24,206 adding 'biotite/sequence/align/matrix_data/PAM470.mat' 2023-09-16T10:53:24,208 adding 'biotite/sequence/align/matrix_data/PAM480.mat' 2023-09-16T10:53:24,209 adding 'biotite/sequence/align/matrix_data/PAM490.mat' 2023-09-16T10:53:24,211 adding 'biotite/sequence/align/matrix_data/PAM50.mat' 2023-09-16T10:53:24,212 adding 'biotite/sequence/align/matrix_data/PAM500.mat' 2023-09-16T10:53:24,214 adding 'biotite/sequence/align/matrix_data/PAM60.mat' 2023-09-16T10:53:24,216 adding 'biotite/sequence/align/matrix_data/PAM70.mat' 2023-09-16T10:53:24,217 adding 'biotite/sequence/align/matrix_data/PAM80.mat' 2023-09-16T10:53:24,219 adding 'biotite/sequence/align/matrix_data/PAM90.mat' 2023-09-16T10:53:24,220 adding 'biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat' 2023-09-16T10:53:24,222 adding 'biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat' 2023-09-16T10:53:24,223 adding 'biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat' 2023-09-16T10:53:24,225 adding 'biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat' 2023-09-16T10:53:24,226 adding 'biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat' 2023-09-16T10:53:24,228 adding 'biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat' 2023-09-16T10:53:24,230 adding 'biotite/sequence/graphics/__init__.py' 2023-09-16T10:53:24,233 adding 'biotite/sequence/graphics/alignment.py' 2023-09-16T10:53:24,235 adding 'biotite/sequence/graphics/colorschemes.py' 2023-09-16T10:53:24,237 adding 'biotite/sequence/graphics/dendrogram.py' 2023-09-16T10:53:24,239 adding 'biotite/sequence/graphics/features.py' 2023-09-16T10:53:24,241 adding 'biotite/sequence/graphics/logo.py' 2023-09-16T10:53:24,245 adding 'biotite/sequence/graphics/plasmid.py' 2023-09-16T10:53:24,247 adding 'biotite/sequence/graphics/color_schemes/autumn.json' 2023-09-16T10:53:24,248 adding 'biotite/sequence/graphics/color_schemes/blossom.json' 2023-09-16T10:53:24,250 adding 'biotite/sequence/graphics/color_schemes/clustalx_dna.json' 2023-09-16T10:53:24,251 adding 'biotite/sequence/graphics/color_schemes/clustalx_protein.json' 2023-09-16T10:53:24,252 adding 'biotite/sequence/graphics/color_schemes/flower.json' 2023-09-16T10:53:24,254 adding 'biotite/sequence/graphics/color_schemes/jalview_buried.json' 2023-09-16T10:53:24,255 adding 'biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json' 2023-09-16T10:53:24,256 adding 'biotite/sequence/graphics/color_schemes/jalview_prop_helix.json' 2023-09-16T10:53:24,258 adding 'biotite/sequence/graphics/color_schemes/jalview_prop_strand.json' 2023-09-16T10:53:24,259 adding 'biotite/sequence/graphics/color_schemes/jalview_prop_turn.json' 2023-09-16T10:53:24,260 adding 'biotite/sequence/graphics/color_schemes/jalview_taylor.json' 2023-09-16T10:53:24,262 adding 'biotite/sequence/graphics/color_schemes/jalview_zappo.json' 2023-09-16T10:53:24,263 adding 'biotite/sequence/graphics/color_schemes/ocean.json' 2023-09-16T10:53:24,264 adding 'biotite/sequence/graphics/color_schemes/pb_flower.json' 2023-09-16T10:53:24,265 adding 'biotite/sequence/graphics/color_schemes/rainbow_dna.json' 2023-09-16T10:53:24,267 adding 'biotite/sequence/graphics/color_schemes/rainbow_protein.json' 2023-09-16T10:53:24,268 adding 'biotite/sequence/graphics/color_schemes/spring.json' 2023-09-16T10:53:24,269 adding 'biotite/sequence/graphics/color_schemes/sunset.json' 2023-09-16T10:53:24,271 adding 'biotite/sequence/graphics/color_schemes/wither.json' 2023-09-16T10:53:24,273 adding 'biotite/sequence/io/__init__.py' 2023-09-16T10:53:24,274 adding 'biotite/sequence/io/general.py' 2023-09-16T10:53:24,277 adding 'biotite/sequence/io/fasta/__init__.py' 2023-09-16T10:53:24,278 adding 'biotite/sequence/io/fasta/convert.py' 2023-09-16T10:53:24,280 adding 'biotite/sequence/io/fasta/file.py' 2023-09-16T10:53:24,282 adding 'biotite/sequence/io/fastq/__init__.py' 2023-09-16T10:53:24,284 adding 'biotite/sequence/io/fastq/convert.py' 2023-09-16T10:53:24,286 adding 'biotite/sequence/io/fastq/file.py' 2023-09-16T10:53:24,288 adding 'biotite/sequence/io/genbank/__init__.py' 2023-09-16T10:53:24,290 adding 'biotite/sequence/io/genbank/annotation.py' 2023-09-16T10:53:24,293 adding 'biotite/sequence/io/genbank/file.py' 2023-09-16T10:53:24,295 adding 'biotite/sequence/io/genbank/metadata.py' 2023-09-16T10:53:24,296 adding 'biotite/sequence/io/genbank/sequence.py' 2023-09-16T10:53:24,298 adding 'biotite/sequence/io/gff/__init__.py' 2023-09-16T10:53:24,300 adding 'biotite/sequence/io/gff/convert.py' 2023-09-16T10:53:24,302 adding 'biotite/sequence/io/gff/file.py' 2023-09-16T10:53:24,304 adding 'biotite/sequence/phylo/__init__.py' 2023-09-16T10:53:24,396 adding 'biotite/sequence/phylo/nj.c' 2023-09-16T10:53:24,614 adding 'biotite/sequence/phylo/nj.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:24,711 adding 'biotite/sequence/phylo/tree.c' 2023-09-16T10:53:24,979 adding 'biotite/sequence/phylo/tree.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:25,077 adding 'biotite/sequence/phylo/upgma.c' 2023-09-16T10:53:25,284 adding 'biotite/sequence/phylo/upgma.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:25,294 adding 'biotite/structure/__init__.py' 2023-09-16T10:53:25,299 adding 'biotite/structure/atoms.py' 2023-09-16T10:53:25,305 adding 'biotite/structure/basepairs.py' 2023-09-16T10:53:25,476 adding 'biotite/structure/bonds.c' 2023-09-16T10:53:25,994 adding 'biotite/structure/bonds.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:26,017 adding 'biotite/structure/box.py' 2023-09-16T10:53:26,132 adding 'biotite/structure/celllist.c' 2023-09-16T10:53:26,433 adding 'biotite/structure/celllist.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:26,445 adding 'biotite/structure/chains.py' 2023-09-16T10:53:26,548 adding 'biotite/structure/charges.c' 2023-09-16T10:53:26,817 adding 'biotite/structure/charges.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:26,829 adding 'biotite/structure/compare.py' 2023-09-16T10:53:26,830 adding 'biotite/structure/density.py' 2023-09-16T10:53:26,832 adding 'biotite/structure/dotbracket.py' 2023-09-16T10:53:26,833 adding 'biotite/structure/error.py' 2023-09-16T10:53:26,835 adding 'biotite/structure/filter.py' 2023-09-16T10:53:26,838 adding 'biotite/structure/geometry.py' 2023-09-16T10:53:26,841 adding 'biotite/structure/hbond.py' 2023-09-16T10:53:26,843 adding 'biotite/structure/integrity.py' 2023-09-16T10:53:26,844 adding 'biotite/structure/mechanics.py' 2023-09-16T10:53:26,846 adding 'biotite/structure/molecules.py' 2023-09-16T10:53:26,849 adding 'biotite/structure/pseudoknots.py' 2023-09-16T10:53:26,851 adding 'biotite/structure/rdf.py' 2023-09-16T10:53:26,854 adding 'biotite/structure/residues.py' 2023-09-16T10:53:26,856 adding 'biotite/structure/resutil.py' 2023-09-16T10:53:26,953 adding 'biotite/structure/sasa.c' 2023-09-16T10:53:27,210 adding 'biotite/structure/sasa.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:27,221 adding 'biotite/structure/sse.py' 2023-09-16T10:53:27,222 adding 'biotite/structure/superimpose.py' 2023-09-16T10:53:27,225 adding 'biotite/structure/transform.py' 2023-09-16T10:53:27,227 adding 'biotite/structure/util.py' 2023-09-16T10:53:27,228 adding 'biotite/structure/graphics/__init__.py' 2023-09-16T10:53:27,230 adding 'biotite/structure/graphics/atoms.py' 2023-09-16T10:53:27,232 adding 'biotite/structure/graphics/rna.py' 2023-09-16T10:53:27,234 adding 'biotite/structure/info/__init__.py' 2023-09-16T10:53:27,237 adding 'biotite/structure/info/amino_acids.json' 2023-09-16T10:53:27,238 adding 'biotite/structure/info/amino_acids.py' 2023-09-16T10:53:27,240 adding 'biotite/structure/info/atom_masses.json' 2023-09-16T10:53:27,241 adding 'biotite/structure/info/atoms.py' 2023-09-16T10:53:27,243 adding 'biotite/structure/info/bonds.py' 2023-09-16T10:53:27,245 adding 'biotite/structure/info/carbohydrates.json' 2023-09-16T10:53:27,247 adding 'biotite/structure/info/carbohydrates.py' 2023-09-16T10:53:31,083 adding 'biotite/structure/info/intra_bonds.msgpack' 2023-09-16T10:53:31,259 adding 'biotite/structure/info/link_types.msgpack' 2023-09-16T10:53:31,265 adding 'biotite/structure/info/masses.py' 2023-09-16T10:53:31,267 adding 'biotite/structure/info/misc.py' 2023-09-16T10:53:31,269 adding 'biotite/structure/info/nucleotides.json' 2023-09-16T10:53:31,270 adding 'biotite/structure/info/nucleotides.py' 2023-09-16T10:53:31,272 adding 'biotite/structure/info/radii.py' 2023-09-16T10:53:31,404 adding 'biotite/structure/info/residue_masses.msgpack' 2023-09-16T10:53:31,858 adding 'biotite/structure/info/residue_names.msgpack' 2023-09-16T10:53:40,089 adding 'biotite/structure/info/residues.msgpack' 2023-09-16T10:53:40,712 adding 'biotite/structure/info/standardize.py' 2023-09-16T10:53:40,715 adding 'biotite/structure/io/__init__.py' 2023-09-16T10:53:40,717 adding 'biotite/structure/io/ctab.py' 2023-09-16T10:53:40,720 adding 'biotite/structure/io/general.py' 2023-09-16T10:53:40,723 adding 'biotite/structure/io/trajfile.py' 2023-09-16T10:53:40,726 adding 'biotite/structure/io/dcd/__init__.py' 2023-09-16T10:53:40,728 adding 'biotite/structure/io/dcd/file.py' 2023-09-16T10:53:40,731 adding 'biotite/structure/io/gro/__init__.py' 2023-09-16T10:53:40,733 adding 'biotite/structure/io/gro/file.py' 2023-09-16T10:53:40,736 adding 'biotite/structure/io/mmtf/__init__.py' 2023-09-16T10:53:40,738 adding 'biotite/structure/io/mmtf/assembly.py' 2023-09-16T10:53:40,788 adding 'biotite/structure/io/mmtf/convertarray.c' 2023-09-16T10:53:40,930 adding 'biotite/structure/io/mmtf/convertarray.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:41,048 adding 'biotite/structure/io/mmtf/convertfile.c' 2023-09-16T10:53:41,358 adding 'biotite/structure/io/mmtf/convertfile.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:41,471 adding 'biotite/structure/io/mmtf/decode.c' 2023-09-16T10:53:41,754 adding 'biotite/structure/io/mmtf/decode.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:41,859 adding 'biotite/structure/io/mmtf/encode.c' 2023-09-16T10:53:42,122 adding 'biotite/structure/io/mmtf/encode.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:42,133 adding 'biotite/structure/io/mmtf/file.py' 2023-09-16T10:53:42,136 adding 'biotite/structure/io/mol/__init__.py' 2023-09-16T10:53:42,137 adding 'biotite/structure/io/mol/convert.py' 2023-09-16T10:53:42,139 adding 'biotite/structure/io/mol/file.py' 2023-09-16T10:53:42,141 adding 'biotite/structure/io/netcdf/__init__.py' 2023-09-16T10:53:42,143 adding 'biotite/structure/io/netcdf/file.py' 2023-09-16T10:53:42,145 adding 'biotite/structure/io/npz/__init__.py' 2023-09-16T10:53:42,147 adding 'biotite/structure/io/npz/file.py' 2023-09-16T10:53:42,149 adding 'biotite/structure/io/pdb/__init__.py' 2023-09-16T10:53:42,152 adding 'biotite/structure/io/pdb/convert.py' 2023-09-16T10:53:42,157 adding 'biotite/structure/io/pdb/file.py' 2023-09-16T10:53:42,242 adding 'biotite/structure/io/pdb/hybrid36.c' 2023-09-16T10:53:42,452 adding 'biotite/structure/io/pdb/hybrid36.cpython-311-arm-linux-gnueabihf.so' 2023-09-16T10:53:42,462 adding 'biotite/structure/io/pdbqt/__init__.py' 2023-09-16T10:53:42,464 adding 'biotite/structure/io/pdbqt/convert.py' 2023-09-16T10:53:42,468 adding 'biotite/structure/io/pdbqt/file.py' 2023-09-16T10:53:42,470 adding 'biotite/structure/io/pdbx/__init__.py' 2023-09-16T10:53:42,476 adding 'biotite/structure/io/pdbx/convert.py' 2023-09-16T10:53:42,479 adding 'biotite/structure/io/pdbx/file.py' 2023-09-16T10:53:42,481 adding 'biotite/structure/io/tng/__init__.py' 2023-09-16T10:53:42,482 adding 'biotite/structure/io/tng/file.py' 2023-09-16T10:53:42,484 adding 'biotite/structure/io/trr/__init__.py' 2023-09-16T10:53:42,485 adding 'biotite/structure/io/trr/file.py' 2023-09-16T10:53:42,487 adding 'biotite/structure/io/xtc/__init__.py' 2023-09-16T10:53:42,488 adding 'biotite/structure/io/xtc/file.py' 2023-09-16T10:53:42,490 adding 'biotite-0.38.0.dist-info/LICENSE.rst' 2023-09-16T10:53:42,492 adding 'biotite-0.38.0.dist-info/METADATA' 2023-09-16T10:53:42,493 adding 'biotite-0.38.0.dist-info/WHEEL' 2023-09-16T10:53:42,494 adding 'biotite-0.38.0.dist-info/top_level.txt' 2023-09-16T10:53:42,499 adding 'biotite-0.38.0.dist-info/RECORD' 2023-09-16T10:53:42,859 removing build/bdist.linux-armv7l/wheel 2023-09-16T10:53:43,202 Building wheel for biotite (pyproject.toml): finished with status 'done' 2023-09-16T10:53:45,197 Created wheel for biotite: filename=biotite-0.38.0-cp311-cp311-linux_armv7l.whl size=47544467 sha256=862af14010e6770f7509c0c7ef372c91596f8006067c79a6aedf1e4e985ffc7a 2023-09-16T10:53:45,198 Stored in directory: /home/piwheels/.cache/pip/wheels/63/a1/5c/e7b4abcde1c5a85b7f829adcc0d4098943f61a8c6b9792f40f 2023-09-16T10:53:45,218 Building wheel for numpy (pyproject.toml): started 2023-09-16T10:53:45,219 Running command Building wheel for numpy (pyproject.toml) 2023-09-16T10:53:45,803 setup.py:63: RuntimeWarning: NumPy 1.21.0 may not yet support Python 3.11. 2023-09-16T10:53:45,805 warnings.warn( 2023-09-16T10:53:45,816 Running from numpy source directory. 2023-09-16T10:54:25,026 Processing numpy/random/_bounded_integers.pxd.in 2023-09-16T10:54:25,027 Processing numpy/random/_common.pyx 2023-09-16T10:54:25,027 Processing numpy/random/_philox.pyx 2023-09-16T10:54:25,028 Processing numpy/random/_mt19937.pyx 2023-09-16T10:54:25,029 Processing numpy/random/_bounded_integers.pyx.in 2023-09-16T10:54:25,030 Processing numpy/random/bit_generator.pyx 2023-09-16T10:54:25,031 Processing numpy/random/_pcg64.pyx 2023-09-16T10:54:25,032 Processing numpy/random/_generator.pyx 2023-09-16T10:54:25,033 Processing numpy/random/mtrand.pyx 2023-09-16T10:54:25,034 Processing numpy/random/_sfc64.pyx 2023-09-16T10:54:25,391 Cythonizing sources 2023-09-16T10:54:25,392 blas_opt_info: 2023-09-16T10:54:25,395 blas_mkl_info: 2023-09-16T10:54:25,396 customize UnixCCompiler 2023-09-16T10:54:25,398 libraries mkl_rt not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/arm-linux-gnueabihf'] 2023-09-16T10:54:25,399 NOT AVAILABLE 2023-09-16T10:54:25,401 blis_info: 2023-09-16T10:54:25,401 libraries blis not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/arm-linux-gnueabihf'] 2023-09-16T10:54:25,402 NOT AVAILABLE 2023-09-16T10:54:25,404 openblas_info: 2023-09-16T10:54:25,404 libraries openblas not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/arm-linux-gnueabihf'] 2023-09-16T10:54:25,405 NOT AVAILABLE 2023-09-16T10:54:25,407 accelerate_info: 2023-09-16T10:54:25,407 NOT AVAILABLE 2023-09-16T10:54:25,409 atlas_3_10_blas_threads_info: 2023-09-16T10:54:25,409 Setting PTATLAS=ATLAS 2023-09-16T10:54:25,424 libraries tatlas not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/arm-linux-gnueabihf/atlas', '/usr/lib/arm-linux-gnueabihf'] 2023-09-16T10:54:25,424 NOT AVAILABLE 2023-09-16T10:54:25,426 atlas_3_10_blas_info: 2023-09-16T10:54:25,440 libraries satlas not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/arm-linux-gnueabihf/atlas', '/usr/lib/arm-linux-gnueabihf'] 2023-09-16T10:54:25,440 NOT AVAILABLE 2023-09-16T10:54:25,442 atlas_blas_threads_info: 2023-09-16T10:54:25,442 Setting PTATLAS=ATLAS 2023-09-16T10:54:25,459 libraries ptf77blas,ptcblas,atlas not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/arm-linux-gnueabihf/atlas', '/usr/lib/arm-linux-gnueabihf'] 2023-09-16T10:54:25,460 NOT AVAILABLE 2023-09-16T10:54:25,461 atlas_blas_info: 2023-09-16T10:54:25,639 get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' 2023-09-16T10:54:25,640 customize Gnu95FCompiler 2023-09-16T10:54:25,643 Found executable /usr/bin/gfortran 2023-09-16T10:54:25,664 customize Gnu95FCompiler 2023-09-16T10:54:25,685 customize Gnu95FCompiler using config 2023-09-16T10:54:25,686 compiling '_configtest.c': 2023-09-16T10:54:25,687 /* This file is generated from numpy/distutils/system_info.py */ 2023-09-16T10:54:25,688 void ATL_buildinfo(void); 2023-09-16T10:54:25,689 int main(void) { 2023-09-16T10:54:25,690 ATL_buildinfo(); 2023-09-16T10:54:25,691 return 0; 2023-09-16T10:54:25,691 } 2023-09-16T10:54:25,693 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:54:25,694 compile options: '-c' 2023-09-16T10:54:25,695 arm-linux-gnueabihf-gcc: _configtest.c 2023-09-16T10:54:25,760 arm-linux-gnueabihf-gcc _configtest.o -L/usr/lib/arm-linux-gnueabihf -lf77blas -lcblas -latlas -o _configtest 2023-09-16T10:54:25,935 FOUND: 2023-09-16T10:54:25,936 language = c 2023-09-16T10:54:25,937 define_macros = [('HAVE_CBLAS', None), ('NO_ATLAS_INFO', -1)] 2023-09-16T10:54:25,938 libraries = ['f77blas', 'cblas', 'atlas', 'f77blas', 'cblas'] 2023-09-16T10:54:25,939 library_dirs = ['/usr/lib/arm-linux-gnueabihf'] 2023-09-16T10:54:25,941 FOUND: 2023-09-16T10:54:25,942 language = c 2023-09-16T10:54:25,942 define_macros = [('HAVE_CBLAS', None), ('NO_ATLAS_INFO', -1)] 2023-09-16T10:54:25,943 libraries = ['f77blas', 'cblas', 'atlas', 'f77blas', 'cblas'] 2023-09-16T10:54:25,944 library_dirs = ['/usr/lib/arm-linux-gnueabihf'] 2023-09-16T10:54:26,055 non-existing path in 'numpy/distutils': 'site.cfg' 2023-09-16T10:54:26,056 lapack_opt_info: 2023-09-16T10:54:26,058 lapack_mkl_info: 2023-09-16T10:54:26,059 libraries mkl_rt not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/arm-linux-gnueabihf'] 2023-09-16T10:54:26,061 NOT AVAILABLE 2023-09-16T10:54:26,064 openblas_lapack_info: 2023-09-16T10:54:26,066 libraries openblas not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/arm-linux-gnueabihf'] 2023-09-16T10:54:26,067 NOT AVAILABLE 2023-09-16T10:54:26,069 openblas_clapack_info: 2023-09-16T10:54:26,070 libraries openblas,lapack not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/arm-linux-gnueabihf'] 2023-09-16T10:54:26,072 NOT AVAILABLE 2023-09-16T10:54:26,074 flame_info: 2023-09-16T10:54:26,076 libraries flame not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/arm-linux-gnueabihf'] 2023-09-16T10:54:26,077 NOT AVAILABLE 2023-09-16T10:54:26,080 atlas_3_10_threads_info: 2023-09-16T10:54:26,081 Setting PTATLAS=ATLAS 2023-09-16T10:54:26,101 libraries lapack_atlas not found in /usr/local/lib 2023-09-16T10:54:26,102 libraries tatlas,tatlas not found in /usr/local/lib 2023-09-16T10:54:26,103 libraries lapack_atlas not found in /usr/lib 2023-09-16T10:54:26,105 libraries tatlas,tatlas not found in /usr/lib 2023-09-16T10:54:26,106 libraries lapack_atlas not found in /usr/lib/arm-linux-gnueabihf/atlas 2023-09-16T10:54:26,107 libraries tatlas,tatlas not found in /usr/lib/arm-linux-gnueabihf/atlas 2023-09-16T10:54:26,109 libraries tatlas,tatlas not found in /usr/lib/arm-linux-gnueabihf 2023-09-16T10:54:26,110 2023-09-16T10:54:26,111 NOT AVAILABLE 2023-09-16T10:54:26,113 atlas_3_10_info: 2023-09-16T10:54:26,133 libraries lapack_atlas not found in /usr/local/lib 2023-09-16T10:54:26,134 libraries satlas,satlas not found in /usr/local/lib 2023-09-16T10:54:26,135 libraries lapack_atlas not found in /usr/lib 2023-09-16T10:54:26,136 libraries satlas,satlas not found in /usr/lib 2023-09-16T10:54:26,137 libraries lapack_atlas not found in /usr/lib/arm-linux-gnueabihf/atlas 2023-09-16T10:54:26,138 libraries satlas,satlas not found in /usr/lib/arm-linux-gnueabihf/atlas 2023-09-16T10:54:26,139 libraries satlas,satlas not found in /usr/lib/arm-linux-gnueabihf 2023-09-16T10:54:26,140 2023-09-16T10:54:26,141 NOT AVAILABLE 2023-09-16T10:54:26,143 atlas_threads_info: 2023-09-16T10:54:26,144 Setting PTATLAS=ATLAS 2023-09-16T10:54:26,160 libraries lapack_atlas not found in /usr/local/lib 2023-09-16T10:54:26,161 libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib 2023-09-16T10:54:26,162 libraries lapack_atlas not found in /usr/lib 2023-09-16T10:54:26,163 libraries ptf77blas,ptcblas,atlas not found in /usr/lib 2023-09-16T10:54:26,163 libraries lapack_atlas not found in /usr/lib/arm-linux-gnueabihf/atlas 2023-09-16T10:54:26,164 libraries ptf77blas,ptcblas,atlas not found in /usr/lib/arm-linux-gnueabihf/atlas 2023-09-16T10:54:26,165 libraries ptf77blas,ptcblas,atlas not found in /usr/lib/arm-linux-gnueabihf 2023-09-16T10:54:26,165 2023-09-16T10:54:26,166 NOT AVAILABLE 2023-09-16T10:54:26,168 atlas_info: 2023-09-16T10:54:26,181 libraries lapack_atlas not found in /usr/local/lib 2023-09-16T10:54:26,182 libraries f77blas,cblas,atlas not found in /usr/local/lib 2023-09-16T10:54:26,182 libraries lapack_atlas not found in /usr/lib 2023-09-16T10:54:26,183 libraries f77blas,cblas,atlas not found in /usr/lib 2023-09-16T10:54:26,184 libraries lapack_atlas not found in /usr/lib/arm-linux-gnueabihf/atlas 2023-09-16T10:54:26,184 libraries f77blas,cblas,atlas not found in /usr/lib/arm-linux-gnueabihf/atlas 2023-09-16T10:54:26,196 2023-09-16T10:54:26,199 get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' 2023-09-16T10:54:26,200 customize Gnu95FCompiler 2023-09-16T10:54:26,220 customize Gnu95FCompiler 2023-09-16T10:54:26,240 customize Gnu95FCompiler using config 2023-09-16T10:54:26,241 compiling '_configtest.c': 2023-09-16T10:54:26,242 /* This file is generated from numpy/distutils/system_info.py */ 2023-09-16T10:54:26,243 void ATL_buildinfo(void); 2023-09-16T10:54:26,244 int main(void) { 2023-09-16T10:54:26,245 ATL_buildinfo(); 2023-09-16T10:54:26,245 return 0; 2023-09-16T10:54:26,246 } 2023-09-16T10:54:26,248 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:54:26,249 compile options: '-c' 2023-09-16T10:54:26,250 arm-linux-gnueabihf-gcc: _configtest.c 2023-09-16T10:54:26,312 arm-linux-gnueabihf-gcc _configtest.o -L/usr/lib/arm-linux-gnueabihf -lf77blas -lcblas -latlas -o _configtest 2023-09-16T10:54:26,478 FOUND: 2023-09-16T10:54:26,479 language = f77 2023-09-16T10:54:26,480 libraries = ['lapack', 'f77blas', 'cblas', 'atlas', 'f77blas', 'cblas'] 2023-09-16T10:54:26,481 library_dirs = ['/usr/lib/arm-linux-gnueabihf'] 2023-09-16T10:54:26,481 define_macros = [('NO_ATLAS_INFO', -1)] 2023-09-16T10:54:26,483 FOUND: 2023-09-16T10:54:26,484 language = f77 2023-09-16T10:54:26,484 libraries = ['lapack', 'f77blas', 'cblas', 'atlas', 'f77blas', 'cblas'] 2023-09-16T10:54:26,485 library_dirs = ['/usr/lib/arm-linux-gnueabihf'] 2023-09-16T10:54:26,486 define_macros = [('NO_ATLAS_INFO', -1)] 2023-09-16T10:54:26,570 Warning: attempted relative import with no known parent package 2023-09-16T10:54:26,578 /tmp/pip-build-env-pk9zx3du/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:275: UserWarning: Unknown distribution option: 'define_macros' 2023-09-16T10:54:26,579 warnings.warn(msg) 2023-09-16T10:54:26,582 running bdist_wheel 2023-09-16T10:54:26,582 running build 2023-09-16T10:54:26,584 running config_cc 2023-09-16T10:54:26,584 unifing config_cc, config, build_clib, build_ext, build commands --compiler options 2023-09-16T10:54:26,585 running config_fc 2023-09-16T10:54:26,586 unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options 2023-09-16T10:54:26,587 running build_src 2023-09-16T10:54:26,587 build_src 2023-09-16T10:54:26,588 building py_modules sources 2023-09-16T10:54:26,589 creating build 2023-09-16T10:54:26,590 creating build/src.linux-armv7l-3.11 2023-09-16T10:54:26,591 creating build/src.linux-armv7l-3.11/numpy 2023-09-16T10:54:26,591 creating build/src.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:26,592 building library "npymath" sources 2023-09-16T10:54:27,187 creating build/src.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:27,188 creating build/src.linux-armv7l-3.11/numpy/core/src 2023-09-16T10:54:27,189 creating build/src.linux-armv7l-3.11/numpy/core/src/npymath 2023-09-16T10:54:27,189 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/npymath/npy_math_internal.h 2023-09-16T10:54:27,209 adding 'build/src.linux-armv7l-3.11/numpy/core/src/npymath' to include_dirs. 2023-09-16T10:54:27,210 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/npymath/ieee754.c 2023-09-16T10:54:27,216 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/npymath/npy_math_complex.c 2023-09-16T10:54:27,246 None - nothing done with h_files = ['build/src.linux-armv7l-3.11/numpy/core/src/npymath/npy_math_internal.h'] 2023-09-16T10:54:27,246 building library "npyrandom" sources 2023-09-16T10:54:27,247 building extension "numpy.core._multiarray_tests" sources 2023-09-16T10:54:27,248 creating build/src.linux-armv7l-3.11/numpy/core/src/multiarray 2023-09-16T10:54:27,249 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/multiarray/_multiarray_tests.c 2023-09-16T10:54:27,265 building extension "numpy.core._multiarray_umath" sources 2023-09-16T10:54:50,808 non-existing path in 'numpy/core': 'build/src.linux-armv7l-3.11/numpy/core/src/common' 2023-09-16T10:54:50,809 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/multiarray/arraytypes.c 2023-09-16T10:54:50,969 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/multiarray/einsum.c 2023-09-16T10:54:50,975 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/multiarray/einsum_sumprod.c 2023-09-16T10:54:51,890 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/multiarray/lowlevel_strided_loops.c 2023-09-16T10:54:53,193 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/multiarray/nditer_templ.c 2023-09-16T10:54:53,251 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/multiarray/scalartypes.c 2023-09-16T10:54:53,442 creating build/src.linux-armv7l-3.11/numpy/core/src/common 2023-09-16T10:54:53,443 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/common/npy_sort.h 2023-09-16T10:54:53,451 adding 'build/src.linux-armv7l-3.11/numpy/core/src/common' to include_dirs. 2023-09-16T10:54:53,452 creating build/src.linux-armv7l-3.11/numpy/core/src/npysort 2023-09-16T10:54:53,454 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/npysort/quicksort.c 2023-09-16T10:54:53,472 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/npysort/mergesort.c 2023-09-16T10:54:53,487 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/npysort/timsort.c 2023-09-16T10:54:53,552 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/npysort/heapsort.c 2023-09-16T10:54:53,564 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/npysort/radixsort.c 2023-09-16T10:54:53,576 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/common/npy_partition.h 2023-09-16T10:54:53,583 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/npysort/selection.c 2023-09-16T10:54:53,648 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/common/npy_binsearch.h 2023-09-16T10:54:53,660 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/npysort/binsearch.c 2023-09-16T10:54:53,690 creating build/src.linux-armv7l-3.11/numpy/core/src/umath 2023-09-16T10:54:53,690 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/umath/funcs.inc 2023-09-16T10:54:53,696 adding 'build/src.linux-armv7l-3.11/numpy/core/src/umath' to include_dirs. 2023-09-16T10:54:53,697 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/umath/simd.inc 2023-09-16T10:54:53,759 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops.h 2023-09-16T10:54:53,816 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_utils.h 2023-09-16T10:54:53,823 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops.c 2023-09-16T10:54:53,931 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_unary_fp.dispatch.c 2023-09-16T10:54:53,975 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_arithm_fp.dispatch.c 2023-09-16T10:54:54,017 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_arithmetic.dispatch.c 2023-09-16T10:54:54,029 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_trigonometric.dispatch.c 2023-09-16T10:54:54,033 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_exponent_log.dispatch.c 2023-09-16T10:54:54,047 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/umath/matmul.h 2023-09-16T10:54:54,051 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/umath/matmul.c 2023-09-16T10:54:54,078 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/umath/clip.h 2023-09-16T10:54:54,082 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/umath/clip.c 2023-09-16T10:54:54,090 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/umath/scalarmath.c 2023-09-16T10:54:54,209 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/common/templ_common.h 2023-09-16T10:54:54,215 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/common/npy_cpu_features.c 2023-09-16T10:54:54,225 numpy.core - nothing done with h_files = ['build/src.linux-armv7l-3.11/numpy/core/src/common/npy_sort.h', 'build/src.linux-armv7l-3.11/numpy/core/src/common/npy_partition.h', 'build/src.linux-armv7l-3.11/numpy/core/src/common/npy_binsearch.h', 'build/src.linux-armv7l-3.11/numpy/core/src/umath/funcs.inc', 'build/src.linux-armv7l-3.11/numpy/core/src/umath/simd.inc', 'build/src.linux-armv7l-3.11/numpy/core/src/umath/loops.h', 'build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_utils.h', 'build/src.linux-armv7l-3.11/numpy/core/src/umath/matmul.h', 'build/src.linux-armv7l-3.11/numpy/core/src/umath/clip.h', 'build/src.linux-armv7l-3.11/numpy/core/src/common/templ_common.h', 'build/src.linux-armv7l-3.11/numpy/core/include/numpy/config.h', 'build/src.linux-armv7l-3.11/numpy/core/include/numpy/_numpyconfig.h', 'build/src.linux-armv7l-3.11/numpy/core/include/numpy/__multiarray_api.h', 'build/src.linux-armv7l-3.11/numpy/core/include/numpy/__ufunc_api.h'] 2023-09-16T10:54:54,225 building extension "numpy.core._umath_tests" sources 2023-09-16T10:54:54,226 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/umath/_umath_tests.c 2023-09-16T10:54:54,233 building extension "numpy.core._rational_tests" sources 2023-09-16T10:54:54,234 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/umath/_rational_tests.c 2023-09-16T10:54:54,241 building extension "numpy.core._struct_ufunc_tests" sources 2023-09-16T10:54:54,242 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/umath/_struct_ufunc_tests.c 2023-09-16T10:54:54,244 building extension "numpy.core._operand_flag_tests" sources 2023-09-16T10:54:54,245 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/umath/_operand_flag_tests.c 2023-09-16T10:54:54,247 building extension "numpy.core._simd" sources 2023-09-16T10:54:54,249 creating build/src.linux-armv7l-3.11/numpy/core/src/_simd 2023-09-16T10:54:54,250 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/_simd/_simd_inc.h 2023-09-16T10:54:54,256 adding 'build/src.linux-armv7l-3.11/numpy/core/src/_simd' to include_dirs. 2023-09-16T10:54:54,257 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/_simd/_simd_data.inc 2023-09-16T10:54:54,264 conv_template:> build/src.linux-armv7l-3.11/numpy/core/src/_simd/_simd.dispatch.c 2023-09-16T10:54:54,350 numpy.core - nothing done with h_files = ['build/src.linux-armv7l-3.11/numpy/core/src/_simd/_simd_inc.h', 'build/src.linux-armv7l-3.11/numpy/core/src/_simd/_simd_data.inc'] 2023-09-16T10:54:54,351 building extension "numpy.fft._pocketfft_internal" sources 2023-09-16T10:54:54,352 building extension "numpy.linalg.lapack_lite" sources 2023-09-16T10:54:54,352 creating build/src.linux-armv7l-3.11/numpy/linalg 2023-09-16T10:54:54,353 building extension "numpy.linalg._umath_linalg" sources 2023-09-16T10:54:54,354 conv_template:> build/src.linux-armv7l-3.11/numpy/linalg/umath_linalg.c 2023-09-16T10:54:54,390 building extension "numpy.random._mt19937" sources 2023-09-16T10:54:54,390 building extension "numpy.random._philox" sources 2023-09-16T10:54:54,391 building extension "numpy.random._pcg64" sources 2023-09-16T10:54:54,392 building extension "numpy.random._sfc64" sources 2023-09-16T10:54:54,392 building extension "numpy.random._common" sources 2023-09-16T10:54:54,393 building extension "numpy.random.bit_generator" sources 2023-09-16T10:54:54,394 building extension "numpy.random._generator" sources 2023-09-16T10:54:54,394 building extension "numpy.random._bounded_integers" sources 2023-09-16T10:54:54,395 building extension "numpy.random.mtrand" sources 2023-09-16T10:54:54,396 building data_files sources 2023-09-16T10:54:54,452 build_src: building npy-pkg config files 2023-09-16T10:54:54,460 running build_py 2023-09-16T10:54:54,465 creating build/lib.linux-armv7l-3.11 2023-09-16T10:54:54,466 creating build/lib.linux-armv7l-3.11/numpy 2023-09-16T10:54:54,468 copying numpy/_version.py -> build/lib.linux-armv7l-3.11/numpy 2023-09-16T10:54:54,470 copying numpy/ctypeslib.py -> build/lib.linux-armv7l-3.11/numpy 2023-09-16T10:54:54,474 copying numpy/_pytesttester.py -> build/lib.linux-armv7l-3.11/numpy 2023-09-16T10:54:54,477 copying numpy/version.py -> build/lib.linux-armv7l-3.11/numpy 2023-09-16T10:54:54,479 copying numpy/setup.py -> build/lib.linux-armv7l-3.11/numpy 2023-09-16T10:54:54,481 copying numpy/matlib.py -> build/lib.linux-armv7l-3.11/numpy 2023-09-16T10:54:54,485 copying numpy/_distributor_init.py -> build/lib.linux-armv7l-3.11/numpy 2023-09-16T10:54:54,487 copying numpy/conftest.py -> build/lib.linux-armv7l-3.11/numpy 2023-09-16T10:54:54,490 copying numpy/__init__.py -> build/lib.linux-armv7l-3.11/numpy 2023-09-16T10:54:54,493 copying numpy/dual.py -> build/lib.linux-armv7l-3.11/numpy 2023-09-16T10:54:54,496 copying numpy/_globals.py -> build/lib.linux-armv7l-3.11/numpy 2023-09-16T10:54:54,498 copying build/src.linux-armv7l-3.11/numpy/__config__.py -> build/lib.linux-armv7l-3.11/numpy 2023-09-16T10:54:54,501 creating build/lib.linux-armv7l-3.11/numpy/compat 2023-09-16T10:54:54,502 copying numpy/compat/setup.py -> build/lib.linux-armv7l-3.11/numpy/compat 2023-09-16T10:54:54,504 copying numpy/compat/__init__.py -> build/lib.linux-armv7l-3.11/numpy/compat 2023-09-16T10:54:54,508 copying numpy/compat/_inspect.py -> build/lib.linux-armv7l-3.11/numpy/compat 2023-09-16T10:54:54,511 copying numpy/compat/py3k.py -> build/lib.linux-armv7l-3.11/numpy/compat 2023-09-16T10:54:54,514 creating build/lib.linux-armv7l-3.11/numpy/compat/tests 2023-09-16T10:54:54,515 copying numpy/compat/tests/test_compat.py -> build/lib.linux-armv7l-3.11/numpy/compat/tests 2023-09-16T10:54:54,517 copying numpy/compat/tests/__init__.py -> build/lib.linux-armv7l-3.11/numpy/compat/tests 2023-09-16T10:54:54,520 creating build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,521 copying numpy/core/_dtype_ctypes.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,523 copying numpy/core/overrides.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,527 copying numpy/core/_internal.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,541 copying numpy/core/memmap.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,547 copying numpy/core/_add_newdocs_scalars.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,549 copying numpy/core/setup.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,552 copying numpy/core/_exceptions.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,556 copying numpy/core/getlimits.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,559 copying numpy/core/multiarray.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,564 copying numpy/core/_add_newdocs.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,574 copying numpy/core/_string_helpers.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,577 copying numpy/core/setup_common.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,579 copying numpy/core/function_base.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,584 copying numpy/core/_dtype.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,587 copying numpy/core/umath.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,590 copying numpy/core/einsumfunc.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,594 copying numpy/core/defchararray.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,599 copying numpy/core/_type_aliases.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,602 copying numpy/core/_methods.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,605 copying numpy/core/numeric.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,611 copying numpy/core/machar.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,614 copying numpy/core/cversions.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,616 copying numpy/core/fromnumeric.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,621 copying numpy/core/__init__.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,624 copying numpy/core/numerictypes.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,634 copying numpy/core/arrayprint.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,639 copying numpy/core/_ufunc_config.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,645 copying numpy/core/umath_tests.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,648 copying numpy/core/records.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,653 copying numpy/core/shape_base.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,657 copying numpy/core/_asarray.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,659 copying numpy/core/code_generators/generate_numpy_api.py -> build/lib.linux-armv7l-3.11/numpy/core 2023-09-16T10:54:54,668 creating build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,669 copying numpy/core/tests/test_umath.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,679 copying numpy/core/tests/test_deprecations.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,684 copying numpy/core/tests/test_item_selection.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,687 copying numpy/core/tests/test_regression.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,695 copying numpy/core/tests/test_array_coercion.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,699 copying numpy/core/tests/test_umath_complex.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,704 copying numpy/core/tests/test_cpu_features.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,707 copying numpy/core/tests/_locales.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,710 copying numpy/core/tests/test_extint128.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,714 copying numpy/core/tests/test_casting_unittests.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,720 copying numpy/core/tests/test_ufunc.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,727 copying numpy/core/tests/test_conversion_utils.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,730 copying numpy/core/tests/test_scalar_methods.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,732 copying numpy/core/tests/test_errstate.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,734 copying numpy/core/tests/test_longdouble.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,738 copying numpy/core/tests/test_records.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,742 copying numpy/core/tests/test_scalarbuffer.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,746 copying numpy/core/tests/test_scalarmath.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,758 copying numpy/core/tests/test_function_base.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,761 copying numpy/core/tests/test_mem_overlap.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,765 copying numpy/core/tests/test_simd_module.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,768 copying numpy/core/tests/test_memmap.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,771 copying numpy/core/tests/test_umath_accuracy.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,773 copying numpy/core/tests/test_nditer.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,781 copying numpy/core/tests/test_scalarinherit.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,783 copying numpy/core/tests/test_datetime.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,788 copying numpy/core/tests/test_unicode.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,791 copying numpy/core/tests/test_defchararray.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,794 copying numpy/core/tests/test_cython.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,796 copying numpy/core/tests/test_argparse.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,798 copying numpy/core/tests/test__exceptions.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,801 copying numpy/core/tests/test_simd.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,804 copying numpy/core/tests/test_indexing.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,809 copying numpy/core/tests/test_arrayprint.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,813 copying numpy/core/tests/test_numerictypes.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,816 copying numpy/core/tests/test_abc.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,818 copying numpy/core/tests/test_half.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,822 copying numpy/core/tests/test_print.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,824 copying numpy/core/tests/test_multiarray.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,836 copying numpy/core/tests/__init__.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,837 copying numpy/core/tests/test_getlimits.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,840 copying numpy/core/tests/test_api.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,843 copying numpy/core/tests/test_protocols.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,846 copying numpy/core/tests/test_scalar_ctors.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,848 copying numpy/core/tests/test_indexerrors.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,851 copying numpy/core/tests/test_einsum.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,855 copying numpy/core/tests/test_arraymethod.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,858 copying numpy/core/tests/test_shape_base.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,863 copying numpy/core/tests/test_scalarprint.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,866 copying numpy/core/tests/test_dtype.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,871 copying numpy/core/tests/test_cpu_dispatcher.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,873 copying numpy/core/tests/test_machar.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,876 copying numpy/core/tests/test_overrides.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,879 copying numpy/core/tests/test_numeric.py -> build/lib.linux-armv7l-3.11/numpy/core/tests 2023-09-16T10:54:54,888 creating build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,889 copying numpy/distutils/ccompiler_opt.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,900 copying numpy/distutils/core.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,903 copying numpy/distutils/msvccompiler.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,906 copying numpy/distutils/line_endings.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,908 copying numpy/distutils/log.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,911 copying numpy/distutils/intelccompiler.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,914 copying numpy/distutils/extension.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,916 copying numpy/distutils/unixccompiler.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,919 copying numpy/distutils/_shell_utils.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,922 copying numpy/distutils/setup.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,924 copying numpy/distutils/lib2def.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,927 copying numpy/distutils/misc_util.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,933 copying numpy/distutils/npy_pkg_config.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,937 copying numpy/distutils/mingw32ccompiler.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,941 copying numpy/distutils/numpy_distribution.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,944 copying numpy/distutils/pathccompiler.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,946 copying numpy/distutils/from_template.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,949 copying numpy/distutils/__init__.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,951 copying numpy/distutils/conv_template.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,955 copying numpy/distutils/msvc9compiler.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,958 copying numpy/distutils/system_info.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,962 copying numpy/distutils/exec_command.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,966 copying numpy/distutils/cpuinfo.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,968 copying numpy/distutils/ccompiler.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,971 copying build/src.linux-armv7l-3.11/numpy/distutils/__config__.py -> build/lib.linux-armv7l-3.11/numpy/distutils 2023-09-16T10:54:54,974 creating build/lib.linux-armv7l-3.11/numpy/distutils/command 2023-09-16T10:54:54,976 copying numpy/distutils/command/autodist.py -> build/lib.linux-armv7l-3.11/numpy/distutils/command 2023-09-16T10:54:54,978 copying numpy/distutils/command/build_clib.py -> build/lib.linux-armv7l-3.11/numpy/distutils/command 2023-09-16T10:54:54,980 copying numpy/distutils/command/install_data.py -> build/lib.linux-armv7l-3.11/numpy/distutils/command 2023-09-16T10:54:54,982 copying numpy/distutils/command/build_py.py -> build/lib.linux-armv7l-3.11/numpy/distutils/command 2023-09-16T10:54:54,984 copying numpy/distutils/command/install_clib.py -> build/lib.linux-armv7l-3.11/numpy/distutils/command 2023-09-16T10:54:54,986 copying numpy/distutils/command/egg_info.py -> build/lib.linux-armv7l-3.11/numpy/distutils/command 2023-09-16T10:54:54,988 copying numpy/distutils/command/config.py -> build/lib.linux-armv7l-3.11/numpy/distutils/command 2023-09-16T10:54:54,991 copying numpy/distutils/command/bdist_rpm.py -> build/lib.linux-armv7l-3.11/numpy/distutils/command 2023-09-16T10:54:54,993 copying numpy/distutils/command/build_ext.py -> build/lib.linux-armv7l-3.11/numpy/distutils/command 2023-09-16T10:54:54,996 copying numpy/distutils/command/sdist.py -> build/lib.linux-armv7l-3.11/numpy/distutils/command 2023-09-16T10:54:54,998 copying numpy/distutils/command/build_src.py -> build/lib.linux-armv7l-3.11/numpy/distutils/command 2023-09-16T10:54:55,001 copying numpy/distutils/command/install_headers.py -> build/lib.linux-armv7l-3.11/numpy/distutils/command 2023-09-16T10:54:55,003 copying numpy/distutils/command/develop.py -> build/lib.linux-armv7l-3.11/numpy/distutils/command 2023-09-16T10:54:55,005 copying numpy/distutils/command/install.py -> build/lib.linux-armv7l-3.11/numpy/distutils/command 2023-09-16T10:54:55,008 copying numpy/distutils/command/build.py -> build/lib.linux-armv7l-3.11/numpy/distutils/command 2023-09-16T10:54:55,009 copying numpy/distutils/command/__init__.py -> build/lib.linux-armv7l-3.11/numpy/distutils/command 2023-09-16T10:54:55,011 copying numpy/distutils/command/build_scripts.py -> build/lib.linux-armv7l-3.11/numpy/distutils/command 2023-09-16T10:54:55,013 copying numpy/distutils/command/config_compiler.py -> build/lib.linux-armv7l-3.11/numpy/distutils/command 2023-09-16T10:54:55,017 creating build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,018 copying numpy/distutils/fcompiler/gnu.py -> build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,021 copying numpy/distutils/fcompiler/g95.py -> build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,022 copying numpy/distutils/fcompiler/vast.py -> build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,024 copying numpy/distutils/fcompiler/lahey.py -> build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,026 copying numpy/distutils/fcompiler/absoft.py -> build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,028 copying numpy/distutils/fcompiler/hpux.py -> build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,030 copying numpy/distutils/fcompiler/pg.py -> build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,032 copying numpy/distutils/fcompiler/nv.py -> build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,033 copying numpy/distutils/fcompiler/mips.py -> build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,035 copying numpy/distutils/fcompiler/ibm.py -> build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,037 copying numpy/distutils/fcompiler/environment.py -> build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,038 copying numpy/distutils/fcompiler/fujitsu.py -> build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,040 copying numpy/distutils/fcompiler/nag.py -> build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,042 copying numpy/distutils/fcompiler/sun.py -> build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,044 copying numpy/distutils/fcompiler/intel.py -> build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,045 copying numpy/distutils/fcompiler/pathf95.py -> build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,047 copying numpy/distutils/fcompiler/__init__.py -> build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,050 copying numpy/distutils/fcompiler/none.py -> build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,051 copying numpy/distutils/fcompiler/compaq.py -> build/lib.linux-armv7l-3.11/numpy/distutils/fcompiler 2023-09-16T10:54:55,054 creating build/lib.linux-armv7l-3.11/numpy/distutils/tests 2023-09-16T10:54:55,055 copying numpy/distutils/tests/test_mingw32ccompiler.py -> build/lib.linux-armv7l-3.11/numpy/distutils/tests 2023-09-16T10:54:55,057 copying numpy/distutils/tests/test_from_template.py -> build/lib.linux-armv7l-3.11/numpy/distutils/tests 2023-09-16T10:54:55,059 copying numpy/distutils/tests/test_npy_pkg_config.py -> build/lib.linux-armv7l-3.11/numpy/distutils/tests 2023-09-16T10:54:55,062 copying numpy/distutils/tests/test_exec_command.py -> build/lib.linux-armv7l-3.11/numpy/distutils/tests 2023-09-16T10:54:55,064 copying numpy/distutils/tests/test_ccompiler_opt_conf.py -> build/lib.linux-armv7l-3.11/numpy/distutils/tests 2023-09-16T10:54:55,067 copying numpy/distutils/tests/test_fcompiler_intel.py -> build/lib.linux-armv7l-3.11/numpy/distutils/tests 2023-09-16T10:54:55,070 copying numpy/distutils/tests/test_fcompiler_gnu.py -> build/lib.linux-armv7l-3.11/numpy/distutils/tests 2023-09-16T10:54:55,072 copying numpy/distutils/tests/test_fcompiler.py -> build/lib.linux-armv7l-3.11/numpy/distutils/tests 2023-09-16T10:54:55,074 copying numpy/distutils/tests/test_shell_utils.py -> build/lib.linux-armv7l-3.11/numpy/distutils/tests 2023-09-16T10:54:55,076 copying numpy/distutils/tests/test_system_info.py -> build/lib.linux-armv7l-3.11/numpy/distutils/tests 2023-09-16T10:54:55,079 copying numpy/distutils/tests/__init__.py -> build/lib.linux-armv7l-3.11/numpy/distutils/tests 2023-09-16T10:54:55,080 copying numpy/distutils/tests/test_ccompiler_opt.py -> build/lib.linux-armv7l-3.11/numpy/distutils/tests 2023-09-16T10:54:55,084 copying numpy/distutils/tests/test_build_ext.py -> build/lib.linux-armv7l-3.11/numpy/distutils/tests 2023-09-16T10:54:55,086 copying numpy/distutils/tests/test_misc_util.py -> build/lib.linux-armv7l-3.11/numpy/distutils/tests 2023-09-16T10:54:55,088 copying numpy/distutils/tests/test_fcompiler_nagfor.py -> build/lib.linux-armv7l-3.11/numpy/distutils/tests 2023-09-16T10:54:55,090 creating build/lib.linux-armv7l-3.11/numpy/doc 2023-09-16T10:54:55,092 copying numpy/doc/constants.py -> build/lib.linux-armv7l-3.11/numpy/doc 2023-09-16T10:54:55,095 copying numpy/doc/ufuncs.py -> build/lib.linux-armv7l-3.11/numpy/doc 2023-09-16T10:54:55,099 copying numpy/doc/__init__.py -> build/lib.linux-armv7l-3.11/numpy/doc 2023-09-16T10:54:55,106 creating build/lib.linux-armv7l-3.11/numpy/f2py 2023-09-16T10:54:55,107 copying numpy/f2py/rules.py -> build/lib.linux-armv7l-3.11/numpy/f2py 2023-09-16T10:54:55,122 copying numpy/f2py/__version__.py -> build/lib.linux-armv7l-3.11/numpy/f2py 2023-09-16T10:54:55,123 copying numpy/f2py/diagnose.py -> build/lib.linux-armv7l-3.11/numpy/f2py 2023-09-16T10:54:55,126 copying numpy/f2py/cfuncs.py -> build/lib.linux-armv7l-3.11/numpy/f2py 2023-09-16T10:54:55,139 copying numpy/f2py/crackfortran.py -> build/lib.linux-armv7l-3.11/numpy/f2py 2023-09-16T10:54:55,149 copying numpy/f2py/setup.py -> build/lib.linux-armv7l-3.11/numpy/f2py 2023-09-16T10:54:55,151 copying numpy/f2py/func2subr.py -> build/lib.linux-armv7l-3.11/numpy/f2py 2023-09-16T10:54:55,154 copying numpy/f2py/common_rules.py -> build/lib.linux-armv7l-3.11/numpy/f2py 2023-09-16T10:54:55,157 copying numpy/f2py/cb_rules.py -> build/lib.linux-armv7l-3.11/numpy/f2py 2023-09-16T10:54:55,170 copying numpy/f2py/__init__.py -> build/lib.linux-armv7l-3.11/numpy/f2py 2023-09-16T10:54:55,174 copying numpy/f2py/capi_maps.py -> build/lib.linux-armv7l-3.11/numpy/f2py 2023-09-16T10:54:55,178 copying numpy/f2py/f2py_testing.py -> build/lib.linux-armv7l-3.11/numpy/f2py 2023-09-16T10:54:55,180 copying numpy/f2py/f90mod_rules.py -> build/lib.linux-armv7l-3.11/numpy/f2py 2023-09-16T10:54:55,184 copying numpy/f2py/__main__.py -> build/lib.linux-armv7l-3.11/numpy/f2py 2023-09-16T10:54:55,187 copying numpy/f2py/auxfuncs.py -> build/lib.linux-armv7l-3.11/numpy/f2py 2023-09-16T10:54:55,199 copying numpy/f2py/use_rules.py -> build/lib.linux-armv7l-3.11/numpy/f2py 2023-09-16T10:54:55,206 copying numpy/f2py/f2py2e.py -> build/lib.linux-armv7l-3.11/numpy/f2py 2023-09-16T10:54:55,219 creating build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,221 copying numpy/f2py/tests/test_string.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,223 copying numpy/f2py/tests/test_abstract_interface.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,225 copying numpy/f2py/tests/test_crackfortran.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,227 copying numpy/f2py/tests/test_kind.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,229 copying numpy/f2py/tests/test_regression.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,231 copying numpy/f2py/tests/test_return_integer.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,234 copying numpy/f2py/tests/test_array_from_pyobj.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,237 copying numpy/f2py/tests/test_return_logical.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,239 copying numpy/f2py/tests/test_return_complex.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,242 copying numpy/f2py/tests/test_callback.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,245 copying numpy/f2py/tests/test_module_doc.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,247 copying numpy/f2py/tests/test_quoted_character.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,249 copying numpy/f2py/tests/test_block_docstring.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,251 copying numpy/f2py/tests/test_return_real.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,254 copying numpy/f2py/tests/util.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,256 copying numpy/f2py/tests/test_semicolon_split.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,259 copying numpy/f2py/tests/test_compile_function.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,261 copying numpy/f2py/tests/test_assumed_shape.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,264 copying numpy/f2py/tests/test_parameter.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,266 copying numpy/f2py/tests/__init__.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,268 copying numpy/f2py/tests/test_return_character.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,269 copying numpy/f2py/tests/test_size.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,271 copying numpy/f2py/tests/test_common.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,273 copying numpy/f2py/tests/test_mixed.py -> build/lib.linux-armv7l-3.11/numpy/f2py/tests 2023-09-16T10:54:55,276 creating build/lib.linux-armv7l-3.11/numpy/fft 2023-09-16T10:54:55,277 copying numpy/fft/setup.py -> build/lib.linux-armv7l-3.11/numpy/fft 2023-09-16T10:54:55,279 copying numpy/fft/helper.py -> build/lib.linux-armv7l-3.11/numpy/fft 2023-09-16T10:54:55,285 copying numpy/fft/_pocketfft.py -> build/lib.linux-armv7l-3.11/numpy/fft 2023-09-16T10:54:55,292 copying numpy/fft/__init__.py -> build/lib.linux-armv7l-3.11/numpy/fft 2023-09-16T10:54:55,296 creating build/lib.linux-armv7l-3.11/numpy/fft/tests 2023-09-16T10:54:55,297 copying numpy/fft/tests/__init__.py -> build/lib.linux-armv7l-3.11/numpy/fft/tests 2023-09-16T10:54:55,299 copying numpy/fft/tests/test_helper.py -> build/lib.linux-armv7l-3.11/numpy/fft/tests 2023-09-16T10:54:55,302 copying numpy/fft/tests/test_pocketfft.py -> build/lib.linux-armv7l-3.11/numpy/fft/tests 2023-09-16T10:54:55,307 creating build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,309 copying numpy/lib/nanfunctions.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,324 copying numpy/lib/_version.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,328 copying numpy/lib/arraypad.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,335 copying numpy/lib/scimath.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,340 copying numpy/lib/npyio.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,358 copying numpy/lib/setup.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,360 copying numpy/lib/histograms.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,374 copying numpy/lib/arraysetops.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,379 copying numpy/lib/recfunctions.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,386 copying numpy/lib/arrayterator.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,390 copying numpy/lib/twodim_base.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,403 copying numpy/lib/type_check.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,408 copying numpy/lib/index_tricks.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,417 copying numpy/lib/_datasource.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,424 copying numpy/lib/mixins.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,428 copying numpy/lib/ufunclike.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,432 copying numpy/lib/function_base.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,443 copying numpy/lib/user_array.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,448 copying numpy/lib/_iotools.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,454 copying numpy/lib/format.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,457 copying numpy/lib/__init__.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,461 copying numpy/lib/utils.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,468 copying numpy/lib/stride_tricks.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,471 copying numpy/lib/polynomial.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,481 copying numpy/lib/shape_base.py -> build/lib.linux-armv7l-3.11/numpy/lib 2023-09-16T10:54:55,487 creating build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,489 copying numpy/lib/tests/test_format.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,497 copying numpy/lib/tests/test_regression.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,500 copying numpy/lib/tests/test_utils.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,503 copying numpy/lib/tests/test_histograms.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,508 copying numpy/lib/tests/test_index_tricks.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,511 copying numpy/lib/tests/test_stride_tricks.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,515 copying numpy/lib/tests/test_twodim_base.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,519 copying numpy/lib/tests/test_recfunctions.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,523 copying numpy/lib/tests/test_function_base.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,531 copying numpy/lib/tests/test_nanfunctions.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,535 copying numpy/lib/tests/test_ufunclike.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,538 copying numpy/lib/tests/test_mixins.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,541 copying numpy/lib/tests/test__version.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,544 copying numpy/lib/tests/test_financial_expired.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,546 copying numpy/lib/tests/test_arraypad.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,553 copying numpy/lib/tests/__init__.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,555 copying numpy/lib/tests/test_io.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,562 copying numpy/lib/tests/test__datasource.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,565 copying numpy/lib/tests/test_type_check.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,569 copying numpy/lib/tests/test_shape_base.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,573 copying numpy/lib/tests/test__iotools.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,577 copying numpy/lib/tests/test_polynomial.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,581 copying numpy/lib/tests/test_arrayterator.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,583 copying numpy/lib/tests/test_arraysetops.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,587 copying numpy/lib/tests/test_packbits.py -> build/lib.linux-armv7l-3.11/numpy/lib/tests 2023-09-16T10:54:55,592 creating build/lib.linux-armv7l-3.11/numpy/linalg 2023-09-16T10:54:55,594 copying numpy/linalg/setup.py -> build/lib.linux-armv7l-3.11/numpy/linalg 2023-09-16T10:54:55,596 copying numpy/linalg/linalg.py -> build/lib.linux-armv7l-3.11/numpy/linalg 2023-09-16T10:54:55,610 copying numpy/linalg/__init__.py -> build/lib.linux-armv7l-3.11/numpy/linalg 2023-09-16T10:54:55,614 creating build/lib.linux-armv7l-3.11/numpy/linalg/tests 2023-09-16T10:54:55,616 copying numpy/linalg/tests/test_deprecations.py -> build/lib.linux-armv7l-3.11/numpy/linalg/tests 2023-09-16T10:54:55,620 copying numpy/linalg/tests/test_regression.py -> build/lib.linux-armv7l-3.11/numpy/linalg/tests 2023-09-16T10:54:55,623 copying numpy/linalg/tests/test_build.py -> build/lib.linux-armv7l-3.11/numpy/linalg/tests 2023-09-16T10:54:55,627 copying numpy/linalg/tests/test_linalg.py -> build/lib.linux-armv7l-3.11/numpy/linalg/tests 2023-09-16T10:54:55,633 copying numpy/linalg/tests/__init__.py -> build/lib.linux-armv7l-3.11/numpy/linalg/tests 2023-09-16T10:54:55,635 creating build/lib.linux-armv7l-3.11/numpy/ma 2023-09-16T10:54:55,636 copying numpy/ma/bench.py -> build/lib.linux-armv7l-3.11/numpy/ma 2023-09-16T10:54:55,640 copying numpy/ma/testutils.py -> build/lib.linux-armv7l-3.11/numpy/ma 2023-09-16T10:54:55,644 copying numpy/ma/core.py -> build/lib.linux-armv7l-3.11/numpy/ma 2023-09-16T10:54:55,657 copying numpy/ma/timer_comparison.py -> build/lib.linux-armv7l-3.11/numpy/ma 2023-09-16T10:54:55,660 copying numpy/ma/setup.py -> build/lib.linux-armv7l-3.11/numpy/ma 2023-09-16T10:54:55,662 copying numpy/ma/mrecords.py -> build/lib.linux-armv7l-3.11/numpy/ma 2023-09-16T10:54:55,665 copying numpy/ma/__init__.py -> build/lib.linux-armv7l-3.11/numpy/ma 2023-09-16T10:54:55,667 copying numpy/ma/extras.py -> build/lib.linux-armv7l-3.11/numpy/ma 2023-09-16T10:54:55,672 creating build/lib.linux-armv7l-3.11/numpy/ma/tests 2023-09-16T10:54:55,673 copying numpy/ma/tests/test_deprecations.py -> build/lib.linux-armv7l-3.11/numpy/ma/tests 2023-09-16T10:54:55,675 copying numpy/ma/tests/test_regression.py -> build/lib.linux-armv7l-3.11/numpy/ma/tests 2023-09-16T10:54:55,678 copying numpy/ma/tests/test_extras.py -> build/lib.linux-armv7l-3.11/numpy/ma/tests 2023-09-16T10:54:55,681 copying numpy/ma/tests/__init__.py -> build/lib.linux-armv7l-3.11/numpy/ma/tests 2023-09-16T10:54:55,683 copying numpy/ma/tests/test_old_ma.py -> build/lib.linux-armv7l-3.11/numpy/ma/tests 2023-09-16T10:54:55,686 copying numpy/ma/tests/test_core.py -> build/lib.linux-armv7l-3.11/numpy/ma/tests 2023-09-16T10:54:55,694 copying numpy/ma/tests/test_mrecords.py -> build/lib.linux-armv7l-3.11/numpy/ma/tests 2023-09-16T10:54:55,698 copying numpy/ma/tests/test_subclassing.py -> build/lib.linux-armv7l-3.11/numpy/ma/tests 2023-09-16T10:54:55,703 creating build/lib.linux-armv7l-3.11/numpy/matrixlib 2023-09-16T10:54:55,705 copying numpy/matrixlib/defmatrix.py -> build/lib.linux-armv7l-3.11/numpy/matrixlib 2023-09-16T10:54:55,711 copying numpy/matrixlib/setup.py -> build/lib.linux-armv7l-3.11/numpy/matrixlib 2023-09-16T10:54:55,713 copying numpy/matrixlib/__init__.py -> build/lib.linux-armv7l-3.11/numpy/matrixlib 2023-09-16T10:54:55,716 creating build/lib.linux-armv7l-3.11/numpy/matrixlib/tests 2023-09-16T10:54:55,718 copying numpy/matrixlib/tests/test_regression.py -> build/lib.linux-armv7l-3.11/numpy/matrixlib/tests 2023-09-16T10:54:55,722 copying numpy/matrixlib/tests/test_masked_matrix.py -> build/lib.linux-armv7l-3.11/numpy/matrixlib/tests 2023-09-16T10:54:55,727 copying numpy/matrixlib/tests/test_interaction.py -> build/lib.linux-armv7l-3.11/numpy/matrixlib/tests 2023-09-16T10:54:55,731 copying numpy/matrixlib/tests/test_matrix_linalg.py -> build/lib.linux-armv7l-3.11/numpy/matrixlib/tests 2023-09-16T10:54:55,734 copying numpy/matrixlib/tests/test_defmatrix.py -> build/lib.linux-armv7l-3.11/numpy/matrixlib/tests 2023-09-16T10:54:55,739 copying numpy/matrixlib/tests/test_multiarray.py -> build/lib.linux-armv7l-3.11/numpy/matrixlib/tests 2023-09-16T10:54:55,742 copying numpy/matrixlib/tests/__init__.py -> build/lib.linux-armv7l-3.11/numpy/matrixlib/tests 2023-09-16T10:54:55,745 copying numpy/matrixlib/tests/test_numeric.py -> build/lib.linux-armv7l-3.11/numpy/matrixlib/tests 2023-09-16T10:54:55,749 creating build/lib.linux-armv7l-3.11/numpy/polynomial 2023-09-16T10:54:55,751 copying numpy/polynomial/polyutils.py -> build/lib.linux-armv7l-3.11/numpy/polynomial 2023-09-16T10:54:55,755 copying numpy/polynomial/hermite.py -> build/lib.linux-armv7l-3.11/numpy/polynomial 2023-09-16T10:54:55,761 copying numpy/polynomial/setup.py -> build/lib.linux-armv7l-3.11/numpy/polynomial 2023-09-16T10:54:55,763 copying numpy/polynomial/legendre.py -> build/lib.linux-armv7l-3.11/numpy/polynomial 2023-09-16T10:54:55,767 copying numpy/polynomial/chebyshev.py -> build/lib.linux-armv7l-3.11/numpy/polynomial 2023-09-16T10:54:55,772 copying numpy/polynomial/_polybase.py -> build/lib.linux-armv7l-3.11/numpy/polynomial 2023-09-16T10:54:55,776 copying numpy/polynomial/__init__.py -> build/lib.linux-armv7l-3.11/numpy/polynomial 2023-09-16T10:54:55,779 copying numpy/polynomial/polynomial.py -> build/lib.linux-armv7l-3.11/numpy/polynomial 2023-09-16T10:54:55,784 copying numpy/polynomial/hermite_e.py -> build/lib.linux-armv7l-3.11/numpy/polynomial 2023-09-16T10:54:55,788 copying numpy/polynomial/laguerre.py -> build/lib.linux-armv7l-3.11/numpy/polynomial 2023-09-16T10:54:55,794 creating build/lib.linux-armv7l-3.11/numpy/polynomial/tests 2023-09-16T10:54:55,794 copying numpy/polynomial/tests/test_laguerre.py -> build/lib.linux-armv7l-3.11/numpy/polynomial/tests 2023-09-16T10:54:55,799 copying numpy/polynomial/tests/test_printing.py -> build/lib.linux-armv7l-3.11/numpy/polynomial/tests 2023-09-16T10:54:55,802 copying numpy/polynomial/tests/test_chebyshev.py -> build/lib.linux-armv7l-3.11/numpy/polynomial/tests 2023-09-16T10:54:55,805 copying numpy/polynomial/tests/test_hermite.py -> build/lib.linux-armv7l-3.11/numpy/polynomial/tests 2023-09-16T10:54:55,809 copying numpy/polynomial/tests/test_classes.py -> build/lib.linux-armv7l-3.11/numpy/polynomial/tests 2023-09-16T10:54:55,811 copying numpy/polynomial/tests/test_polyutils.py -> build/lib.linux-armv7l-3.11/numpy/polynomial/tests 2023-09-16T10:54:55,813 copying numpy/polynomial/tests/test_hermite_e.py -> build/lib.linux-armv7l-3.11/numpy/polynomial/tests 2023-09-16T10:54:55,816 copying numpy/polynomial/tests/__init__.py -> build/lib.linux-armv7l-3.11/numpy/polynomial/tests 2023-09-16T10:54:55,818 copying numpy/polynomial/tests/test_legendre.py -> build/lib.linux-armv7l-3.11/numpy/polynomial/tests 2023-09-16T10:54:55,820 copying numpy/polynomial/tests/test_polynomial.py -> build/lib.linux-armv7l-3.11/numpy/polynomial/tests 2023-09-16T10:54:55,824 creating build/lib.linux-armv7l-3.11/numpy/random 2023-09-16T10:54:55,825 copying numpy/random/_pickle.py -> build/lib.linux-armv7l-3.11/numpy/random 2023-09-16T10:54:55,828 copying numpy/random/setup.py -> build/lib.linux-armv7l-3.11/numpy/random 2023-09-16T10:54:55,829 copying numpy/random/__init__.py -> build/lib.linux-armv7l-3.11/numpy/random 2023-09-16T10:54:55,833 creating build/lib.linux-armv7l-3.11/numpy/random/tests 2023-09-16T10:54:55,834 copying numpy/random/tests/test_randomstate_regression.py -> build/lib.linux-armv7l-3.11/numpy/random/tests 2023-09-16T10:54:55,838 copying numpy/random/tests/test_regression.py -> build/lib.linux-armv7l-3.11/numpy/random/tests 2023-09-16T10:54:55,842 copying numpy/random/tests/test_generator_mt19937.py -> build/lib.linux-armv7l-3.11/numpy/random/tests 2023-09-16T10:54:55,850 copying numpy/random/tests/test_smoke.py -> build/lib.linux-armv7l-3.11/numpy/random/tests 2023-09-16T10:54:55,855 copying numpy/random/tests/test_random.py -> build/lib.linux-armv7l-3.11/numpy/random/tests 2023-09-16T10:54:55,862 copying numpy/random/tests/test_randomstate.py -> build/lib.linux-armv7l-3.11/numpy/random/tests 2023-09-16T10:54:55,868 copying numpy/random/tests/test_generator_mt19937_regressions.py -> build/lib.linux-armv7l-3.11/numpy/random/tests 2023-09-16T10:54:55,871 copying numpy/random/tests/test_extending.py -> build/lib.linux-armv7l-3.11/numpy/random/tests 2023-09-16T10:54:55,874 copying numpy/random/tests/__init__.py -> build/lib.linux-armv7l-3.11/numpy/random/tests 2023-09-16T10:54:55,876 copying numpy/random/tests/test_seed_sequence.py -> build/lib.linux-armv7l-3.11/numpy/random/tests 2023-09-16T10:54:55,879 copying numpy/random/tests/test_direct.py -> build/lib.linux-armv7l-3.11/numpy/random/tests 2023-09-16T10:54:55,883 creating build/lib.linux-armv7l-3.11/numpy/testing 2023-09-16T10:54:55,884 copying numpy/testing/print_coercion_tables.py -> build/lib.linux-armv7l-3.11/numpy/testing 2023-09-16T10:54:55,887 copying numpy/testing/setup.py -> build/lib.linux-armv7l-3.11/numpy/testing 2023-09-16T10:54:55,889 copying numpy/testing/__init__.py -> build/lib.linux-armv7l-3.11/numpy/testing 2023-09-16T10:54:55,891 copying numpy/testing/utils.py -> build/lib.linux-armv7l-3.11/numpy/testing 2023-09-16T10:54:55,894 creating build/lib.linux-armv7l-3.11/numpy/testing/_private 2023-09-16T10:54:55,895 copying numpy/testing/_private/parameterized.py -> build/lib.linux-armv7l-3.11/numpy/testing/_private 2023-09-16T10:54:55,900 copying numpy/testing/_private/nosetester.py -> build/lib.linux-armv7l-3.11/numpy/testing/_private 2023-09-16T10:54:55,903 copying numpy/testing/_private/__init__.py -> build/lib.linux-armv7l-3.11/numpy/testing/_private 2023-09-16T10:54:55,904 copying numpy/testing/_private/decorators.py -> build/lib.linux-armv7l-3.11/numpy/testing/_private 2023-09-16T10:54:55,910 copying numpy/testing/_private/utils.py -> build/lib.linux-armv7l-3.11/numpy/testing/_private 2023-09-16T10:54:55,916 copying numpy/testing/_private/noseclasses.py -> build/lib.linux-armv7l-3.11/numpy/testing/_private 2023-09-16T10:54:55,920 creating build/lib.linux-armv7l-3.11/numpy/testing/tests 2023-09-16T10:54:55,921 copying numpy/testing/tests/test_utils.py -> build/lib.linux-armv7l-3.11/numpy/testing/tests 2023-09-16T10:54:55,927 copying numpy/testing/tests/test_doctesting.py -> build/lib.linux-armv7l-3.11/numpy/testing/tests 2023-09-16T10:54:55,930 copying numpy/testing/tests/__init__.py -> build/lib.linux-armv7l-3.11/numpy/testing/tests 2023-09-16T10:54:55,932 creating build/lib.linux-armv7l-3.11/numpy/typing 2023-09-16T10:54:55,933 copying numpy/typing/_callable.py -> build/lib.linux-armv7l-3.11/numpy/typing 2023-09-16T10:54:55,937 copying numpy/typing/_dtype_like.py -> build/lib.linux-armv7l-3.11/numpy/typing 2023-09-16T10:54:55,940 copying numpy/typing/setup.py -> build/lib.linux-armv7l-3.11/numpy/typing 2023-09-16T10:54:55,942 copying numpy/typing/_generic_alias.py -> build/lib.linux-armv7l-3.11/numpy/typing 2023-09-16T10:54:55,945 copying numpy/typing/_scalars.py -> build/lib.linux-armv7l-3.11/numpy/typing 2023-09-16T10:54:55,948 copying numpy/typing/_nbit.py -> build/lib.linux-armv7l-3.11/numpy/typing 2023-09-16T10:54:55,950 copying numpy/typing/mypy_plugin.py -> build/lib.linux-armv7l-3.11/numpy/typing 2023-09-16T10:54:55,953 copying numpy/typing/_char_codes.py -> build/lib.linux-armv7l-3.11/numpy/typing 2023-09-16T10:54:55,955 copying numpy/typing/__init__.py -> build/lib.linux-armv7l-3.11/numpy/typing 2023-09-16T10:54:55,959 copying numpy/typing/_add_docstring.py -> build/lib.linux-armv7l-3.11/numpy/typing 2023-09-16T10:54:55,962 copying numpy/typing/_extended_precision.py -> build/lib.linux-armv7l-3.11/numpy/typing 2023-09-16T10:54:55,964 copying numpy/typing/_shape.py -> build/lib.linux-armv7l-3.11/numpy/typing 2023-09-16T10:54:55,966 copying numpy/typing/_array_like.py -> build/lib.linux-armv7l-3.11/numpy/typing 2023-09-16T10:54:55,969 creating build/lib.linux-armv7l-3.11/numpy/typing/tests 2023-09-16T10:54:55,971 copying numpy/typing/tests/test_typing.py -> build/lib.linux-armv7l-3.11/numpy/typing/tests 2023-09-16T10:54:55,975 copying numpy/typing/tests/test_isfile.py -> build/lib.linux-armv7l-3.11/numpy/typing/tests 2023-09-16T10:54:55,977 copying numpy/typing/tests/test_generic_alias.py -> build/lib.linux-armv7l-3.11/numpy/typing/tests 2023-09-16T10:54:55,980 copying numpy/typing/tests/__init__.py -> build/lib.linux-armv7l-3.11/numpy/typing/tests 2023-09-16T10:54:55,983 creating build/lib.linux-armv7l-3.11/numpy/tests 2023-09-16T10:54:55,984 copying numpy/tests/test_ctypeslib.py -> build/lib.linux-armv7l-3.11/numpy/tests 2023-09-16T10:54:55,987 copying numpy/tests/test_numpy_version.py -> build/lib.linux-armv7l-3.11/numpy/tests 2023-09-16T10:54:55,990 copying numpy/tests/test_reloading.py -> build/lib.linux-armv7l-3.11/numpy/tests 2023-09-16T10:54:55,992 copying numpy/tests/test_scripts.py -> build/lib.linux-armv7l-3.11/numpy/tests 2023-09-16T10:54:55,994 copying numpy/tests/test_warnings.py -> build/lib.linux-armv7l-3.11/numpy/tests 2023-09-16T10:54:55,996 copying numpy/tests/__init__.py -> build/lib.linux-armv7l-3.11/numpy/tests 2023-09-16T10:54:55,998 copying numpy/tests/test_public_api.py -> build/lib.linux-armv7l-3.11/numpy/tests 2023-09-16T10:54:56,001 copying numpy/tests/test_matlib.py -> build/lib.linux-armv7l-3.11/numpy/tests 2023-09-16T10:54:56,029 UPDATING build/lib.linux-armv7l-3.11/numpy/_version.py 2023-09-16T10:54:56,029 set build/lib.linux-armv7l-3.11/numpy/_version.py to '1.21.0' 2023-09-16T10:54:56,030 running build_clib 2023-09-16T10:54:56,031 customize UnixCCompiler 2023-09-16T10:54:56,032 customize UnixCCompiler using new_build_clib 2023-09-16T10:54:56,086 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=native) 2023-09-16T10:54:56,087 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:54:56,088 creating /tmp/tmpxi2wl1cm/tmp 2023-09-16T10:54:56,089 creating /tmp/tmpxi2wl1cm/tmp/pip-install-la1zlv6k 2023-09-16T10:54:56,090 creating /tmp/tmpxi2wl1cm/tmp/pip-install-la1zlv6k/numpy_c137cfc9558c42adb2c0ef295e347bdd 2023-09-16T10:54:56,091 creating /tmp/tmpxi2wl1cm/tmp/pip-install-la1zlv6k/numpy_c137cfc9558c42adb2c0ef295e347bdd/numpy 2023-09-16T10:54:56,092 creating /tmp/tmpxi2wl1cm/tmp/pip-install-la1zlv6k/numpy_c137cfc9558c42adb2c0ef295e347bdd/numpy/distutils 2023-09-16T10:54:56,093 creating /tmp/tmpxi2wl1cm/tmp/pip-install-la1zlv6k/numpy_c137cfc9558c42adb2c0ef295e347bdd/numpy/distutils/checks 2023-09-16T10:54:56,094 compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:54:56,095 extra options: '-march=native' 2023-09-16T10:54:56,159 CCompilerOpt.cc_test_flags[1008] : testing flags (-O3) 2023-09-16T10:54:56,160 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:54:56,162 compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:54:56,163 extra options: '-O3' 2023-09-16T10:54:56,224 CCompilerOpt.cc_test_flags[1008] : testing flags (-Werror) 2023-09-16T10:54:56,225 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:54:56,227 compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:54:56,228 extra options: '-Werror' 2023-09-16T10:54:56,289 CCompilerOpt.__init__[1696] : check requested baseline 2023-09-16T10:54:56,296 CCompilerOpt.__init__[1705] : check requested dispatch-able features 2023-09-16T10:54:56,305 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon) 2023-09-16T10:54:56,306 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:54:56,308 compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:54:56,309 extra options: '-mfpu=neon' 2023-09-16T10:54:56,397 CCompilerOpt.feature_test[1461] : testing feature 'NEON' with flags (-mfpu=neon) 2023-09-16T10:54:56,398 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:54:56,401 compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:54:56,402 extra options: '-mfpu=neon -Werror' 2023-09-16T10:54:56,863 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2023-09-16T10:54:56,864 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:54:56,866 compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:54:56,867 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee' 2023-09-16T10:54:56,930 CCompilerOpt.feature_test[1461] : testing feature 'NEON_FP16' with flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2023-09-16T10:54:56,931 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:54:56,933 compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:54:56,934 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee -Werror' 2023-09-16T10:54:57,427 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-vfpv4) 2023-09-16T10:54:57,428 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:54:57,429 compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:54:57,430 extra options: '-mfpu=neon-vfpv4' 2023-09-16T10:54:57,494 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp-armv8 -march=armv8-a+simd) 2023-09-16T10:54:57,495 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:54:57,497 compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:54:57,498 extra options: '-mfpu=neon-fp-armv8 -march=armv8-a+simd' 2023-09-16T10:54:57,560 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16) 2023-09-16T10:54:57,561 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:54:57,563 compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:54:57,564 extra options: '-march=armv8.2-a+fp16' 2023-09-16T10:54:57,627 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDHP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16) 2023-09-16T10:54:57,628 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:54:57,630 compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:54:57,631 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16 -Werror' 2023-09-16T10:54:58,218 CCompilerOpt.feature_test[1461] : testing feature 'NEON_VFPV4' with flags (-mfp16-format=ieee -mfpu=neon-vfpv4) 2023-09-16T10:54:58,219 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:54:58,221 compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:54:58,222 extra options: '-mfp16-format=ieee -mfpu=neon-vfpv4 -Werror' 2023-09-16T10:54:58,708 CCompilerOpt.feature_test[1461] : testing feature 'ASIMD' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd) 2023-09-16T10:54:58,709 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:54:58,711 compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:54:58,713 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd -Werror' 2023-09-16T10:54:59,238 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16fml) 2023-09-16T10:54:59,239 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:54:59,241 compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:54:59,242 extra options: '-march=armv8.2-a+fp16fml' 2023-09-16T10:54:59,303 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDFHM' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml) 2023-09-16T10:54:59,304 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:54:59,307 compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:54:59,308 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror' 2023-09-16T10:54:59,846 CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c /tmp/pip-install-la1zlv6k/numpy_c137cfc9558c42adb2c0ef295e347bdd/numpy/distutils/checks/cpu_asimdfhm.c -o /tmp/tmpxi2wl1cm/tmp/pip-install-la1zlv6k/numpy_c137cfc9558c42adb2c0ef295e347bdd/numpy/distutils/checks/cpu_asimdfhm.o -MMD -MF /tmp/tmpxi2wl1cm/tmp/pip-install-la1zlv6k/numpy_c137cfc9558c42adb2c0ef295e347bdd/numpy/distutils/checks/cpu_asimdfhm.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror) failed with exit status 1 output -> 2023-09-16T10:54:59,847 /tmp/pip-install-la1zlv6k/numpy_c137cfc9558c42adb2c0ef295e347bdd/numpy/distutils/checks/cpu_asimdfhm.c: In function ‘main’: 2023-09-16T10:54:59,848 /tmp/pip-install-la1zlv6k/numpy_c137cfc9558c42adb2c0ef295e347bdd/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: implicit declaration of function ‘vfmlal_low_u32’; did you mean ‘vfmlal_low_f16’? [-Werror=implicit-function-declaration] 2023-09-16T10:54:59,849 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2023-09-16T10:54:59,850 | ^~~~~~~~~~~~~~ 2023-09-16T10:54:59,851 | vfmlal_low_f16 2023-09-16T10:54:59,852 /tmp/pip-install-la1zlv6k/numpy_c137cfc9558c42adb2c0ef295e347bdd/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: incompatible type for argument 1 of ‘vget_lane_f32’ 2023-09-16T10:54:59,853 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2023-09-16T10:54:59,854 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-16T10:54:59,855 | | 2023-09-16T10:54:59,856 | int 2023-09-16T10:54:59,857 In file included from /tmp/pip-install-la1zlv6k/numpy_c137cfc9558c42adb2c0ef295e347bdd/numpy/distutils/checks/cpu_asimdfhm.c:4: 2023-09-16T10:54:59,858 /usr/lib/gcc/arm-linux-gnueabihf/12/include/arm_neon.h:6210:28: note: expected ‘float32x2_t’ but argument is of type ‘int’ 2023-09-16T10:54:59,859 6210 | vget_lane_f32 (float32x2_t __a, const int __b) 2023-09-16T10:54:59,860 | ~~~~~~~~~~~~^~~ 2023-09-16T10:54:59,861 /tmp/pip-install-la1zlv6k/numpy_c137cfc9558c42adb2c0ef295e347bdd/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: implicit declaration of function ‘vfmlslq_high_u32’; did you mean ‘vfmlslq_high_f16’? [-Werror=implicit-function-declaration] 2023-09-16T10:54:59,862 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2023-09-16T10:54:59,863 | ^~~~~~~~~~~~~~~~ 2023-09-16T10:54:59,864 | vfmlslq_high_f16 2023-09-16T10:54:59,865 /tmp/pip-install-la1zlv6k/numpy_c137cfc9558c42adb2c0ef295e347bdd/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: incompatible type for argument 1 of ‘vgetq_lane_f32’ 2023-09-16T10:54:59,866 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2023-09-16T10:54:59,867 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-16T10:54:59,868 | | 2023-09-16T10:54:59,869 | int 2023-09-16T10:54:59,870 /usr/lib/gcc/arm-linux-gnueabihf/12/include/arm_neon.h:6308:29: note: expected ‘float32x4_t’ but argument is of type ‘int’ 2023-09-16T10:54:59,870 6308 | vgetq_lane_f32 (float32x4_t __a, const int __b) 2023-09-16T10:54:59,871 | ~~~~~~~~~~~~^~~ 2023-09-16T10:54:59,872 cc1: all warnings being treated as errors 2023-09-16T10:54:59,874 CCompilerOpt.feature_test[1477] : testing failed 2023-09-16T10:54:59,875 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+dotprod) 2023-09-16T10:54:59,876 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:54:59,878 compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:54:59,879 extra options: '-march=armv8.2-a+dotprod' 2023-09-16T10:54:59,942 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDDP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod) 2023-09-16T10:54:59,943 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:54:59,946 compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:54:59,947 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror' 2023-09-16T10:55:00,474 CCompilerOpt.__init__[1721] : initialize targets groups 2023-09-16T10:55:00,480 CCompilerOpt.__init__[1723] : parse target group simd_test 2023-09-16T10:55:00,488 CCompilerOpt._parse_target_tokens[1934] : skip targets (SSE42 AVX512F SSE2 VSX FMA4 (AVX2 FMA3) AVX512_SKX VSX3 XOP VSX2) not part of baseline or dispatch-able features 2023-09-16T10:55:00,495 CCompilerOpt.generate_dispatch_header[2267] : generate CPU dispatch header: (build/src.linux-armv7l-3.11/numpy/distutils/include/npy_cpu_dispatch_config.h) 2023-09-16T10:55:00,501 CCompilerOpt.generate_dispatch_header[2276] : dispatch header dir build/src.linux-armv7l-3.11/numpy/distutils/include does not exist, creating it 2023-09-16T10:55:00,509 building 'npymath' library 2023-09-16T10:55:00,510 compiling C sources 2023-09-16T10:55:00,512 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:55:00,514 creating build/temp.linux-armv7l-3.11 2023-09-16T10:55:00,515 creating build/temp.linux-armv7l-3.11/numpy 2023-09-16T10:55:00,516 creating build/temp.linux-armv7l-3.11/numpy/core 2023-09-16T10:55:00,517 creating build/temp.linux-armv7l-3.11/numpy/core/src 2023-09-16T10:55:00,518 creating build/temp.linux-armv7l-3.11/numpy/core/src/npymath 2023-09-16T10:55:00,519 creating build/temp.linux-armv7l-3.11/build 2023-09-16T10:55:00,521 creating build/temp.linux-armv7l-3.11/build/src.linux-armv7l-3.11 2023-09-16T10:55:00,522 creating build/temp.linux-armv7l-3.11/build/src.linux-armv7l-3.11/numpy 2023-09-16T10:55:00,523 creating build/temp.linux-armv7l-3.11/build/src.linux-armv7l-3.11/numpy/core 2023-09-16T10:55:00,524 creating build/temp.linux-armv7l-3.11/build/src.linux-armv7l-3.11/numpy/core/src 2023-09-16T10:55:00,525 creating build/temp.linux-armv7l-3.11/build/src.linux-armv7l-3.11/numpy/core/src/npymath 2023-09-16T10:55:00,527 compile options: '-Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -Inumpy/core/include -Ibuild/src.linux-armv7l-3.11/numpy/core/include/numpy -Ibuild/src.linux-armv7l-3.11/numpy/distutils/include -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:55:00,543 arm-linux-gnueabihf-gcc: numpy/core/src/npymath/npy_math.c 2023-09-16T10:55:00,545 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/npymath/ieee754.c 2023-09-16T10:55:00,546 arm-linux-gnueabihf-gcc: numpy/core/src/npymath/halffloat.c 2023-09-16T10:55:00,547 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/npymath/npy_math_complex.c 2023-09-16T10:55:01,073 In file included from numpy/core/src/npymath/npy_math.c:9: 2023-09-16T10:55:01,074 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:01,076 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:01,077 539 | return modf@c@(x, iptr); 2023-09-16T10:55:01,078 | ^~~~ 2023-09-16T10:55:01,080 | | 2023-09-16T10:55:01,081 | npy_longdouble * {aka double *} 2023-09-16T10:55:01,082 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:01,083 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:01,085 from numpy/core/src/npymath/npy_math_private.h:21, 2023-09-16T10:55:01,086 from numpy/core/src/npymath/npy_math_internal.h.src:56: 2023-09-16T10:55:01,097 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:01,099 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:01,100 | ^ 2023-09-16T10:55:02,276 arm-linux-gnueabihf-gcc-ar: adding 4 object files to build/temp.linux-armv7l-3.11/libnpymath.a 2023-09-16T10:55:02,304 building 'npyrandom' library 2023-09-16T10:55:02,305 compiling C sources 2023-09-16T10:55:02,306 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:55:02,308 creating build/temp.linux-armv7l-3.11/numpy/random 2023-09-16T10:55:02,309 creating build/temp.linux-armv7l-3.11/numpy/random/src 2023-09-16T10:55:02,310 creating build/temp.linux-armv7l-3.11/numpy/random/src/distributions 2023-09-16T10:55:02,311 compile options: '-Inumpy/core/include -Ibuild/src.linux-armv7l-3.11/numpy/core/include/numpy -Ibuild/src.linux-armv7l-3.11/numpy/distutils/include -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:55:02,313 arm-linux-gnueabihf-gcc: numpy/random/src/distributions/logfactorial.c 2023-09-16T10:55:02,313 arm-linux-gnueabihf-gcc: numpy/random/src/distributions/random_mvhg_marginals.c 2023-09-16T10:55:02,315 arm-linux-gnueabihf-gcc: numpy/random/src/distributions/distributions.c 2023-09-16T10:55:02,316 arm-linux-gnueabihf-gcc: numpy/random/src/distributions/random_mvhg_count.c 2023-09-16T10:55:02,480 arm-linux-gnueabihf-gcc: numpy/random/src/distributions/random_hypergeometric.c 2023-09-16T10:55:04,978 arm-linux-gnueabihf-gcc-ar: adding 5 object files to build/temp.linux-armv7l-3.11/libnpyrandom.a 2023-09-16T10:55:05,000 running build_ext 2023-09-16T10:55:05,001 customize UnixCCompiler 2023-09-16T10:55:05,002 customize UnixCCompiler using new_build_ext 2023-09-16T10:55:05,011 CCompilerOpt.__init__[781] : hit the memory cache 2023-09-16T10:55:05,019 CCompilerOpt.generate_dispatch_header[2267] : generate CPU dispatch header: (build/src.linux-armv7l-3.11/numpy/distutils/include/npy_cpu_dispatch_config.h) 2023-09-16T10:55:05,021 get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' 2023-09-16T10:55:05,022 customize Gnu95FCompiler 2023-09-16T10:55:05,041 customize Gnu95FCompiler 2023-09-16T10:55:05,060 customize Gnu95FCompiler using new_build_ext 2023-09-16T10:55:05,066 building 'numpy.core._multiarray_tests' extension 2023-09-16T10:55:05,067 compiling C sources 2023-09-16T10:55:05,067 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:55:05,069 creating build/temp.linux-armv7l-3.11/build/src.linux-armv7l-3.11/numpy/core/src/multiarray 2023-09-16T10:55:05,070 creating build/temp.linux-armv7l-3.11/numpy/core/src/common 2023-09-16T10:55:05,071 compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -Inumpy/core/include -Ibuild/src.linux-armv7l-3.11/numpy/core/include/numpy -Ibuild/src.linux-armv7l-3.11/numpy/distutils/include -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:55:05,072 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/multiarray/_multiarray_tests.c 2023-09-16T10:55:05,073 arm-linux-gnueabihf-gcc: numpy/core/src/common/mem_overlap.c 2023-09-16T10:55:05,075 arm-linux-gnueabihf-gcc: numpy/core/src/common/npy_argparse.c 2023-09-16T10:55:05,595 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:05,596 from numpy/core/src/multiarray/_multiarray_tests.c.src:7: 2023-09-16T10:55:05,598 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:05,599 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:05,601 539 | return modf@c@(x, iptr); 2023-09-16T10:55:05,602 | ^~~~ 2023-09-16T10:55:05,603 | | 2023-09-16T10:55:05,604 | npy_longdouble * {aka double *} 2023-09-16T10:55:05,606 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:05,607 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:05,608 from numpy/core/src/multiarray/_multiarray_tests.c.src:3: 2023-09-16T10:55:05,610 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:05,611 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:05,612 | ^ 2023-09-16T10:55:05,716 numpy/core/src/multiarray/_multiarray_tests.c.src: In function ‘array_solve_diophantine’: 2023-09-16T10:55:05,718 numpy/core/src/multiarray/_multiarray_tests.c.src:1353:29: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2023-09-16T10:55:05,720 1353 | if (PyTuple_GET_SIZE(U) != nterms) { 2023-09-16T10:55:05,721 | ^~ 2023-09-16T10:55:05,757 numpy/core/src/multiarray/_multiarray_tests.c.src: In function ‘PrintFloat_Printf_g’: 2023-09-16T10:55:05,759 numpy/core/src/multiarray/_multiarray_tests.c.src:2096:41: warning: format ‘%Lg’ expects argument of type ‘long double’, but argument 5 has type ‘npy_longdouble’ {aka ‘double’} [-Wformat=] 2023-09-16T10:55:05,760 2096 | PyOS_snprintf(str, sizeof(str), "%.*Lg", precision, x); 2023-09-16T10:55:05,761 | ^~~~~~~ ~ 2023-09-16T10:55:05,762 | | 2023-09-16T10:55:05,763 | npy_longdouble {aka double} 2023-09-16T10:55:10,040 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-3.11/build/src.linux-armv7l-3.11/numpy/core/src/multiarray/_multiarray_tests.o build/temp.linux-armv7l-3.11/numpy/core/src/common/mem_overlap.o build/temp.linux-armv7l-3.11/numpy/core/src/common/npy_argparse.o -L/usr/lib/arm-linux-gnueabihf -Lbuild/temp.linux-armv7l-3.11 -lnpymath -o build/lib.linux-armv7l-3.11/numpy/core/_multiarray_tests.cpython-311-arm-linux-gnueabihf.so 2023-09-16T10:55:10,184 building 'numpy.core._multiarray_umath' extension 2023-09-16T10:55:10,185 compiling C dispatch-able sources 2023-09-16T10:55:10,197 CCompilerOpt.parse_targets[1763] : looking for '@targets' inside -> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_unary_fp.dispatch.c 2023-09-16T10:55:10,207 CCompilerOpt._parse_target_tokens[1934] : skip targets (SSE2 VSX2) not part of baseline or dispatch-able features 2023-09-16T10:55:10,217 CCompilerOpt._parse_target_tokens[1958] : policy 'MAXOPT' is ON 2023-09-16T10:55:10,226 CCompilerOpt._generate_config[2501] : generate dispatched config -> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_unary_fp.dispatch.h 2023-09-16T10:55:10,236 CCompilerOpt._wrap_target[2463] : wrap dispatch-able target -> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_unary_fp.dispatch.neon.c 2023-09-16T10:55:10,246 CCompilerOpt.parse_targets[1763] : looking for '@targets' inside -> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_arithm_fp.dispatch.c 2023-09-16T10:55:10,255 CCompilerOpt._parse_target_tokens[1934] : skip targets (SSE2 AVX2 AVX512F) not part of baseline or dispatch-able features 2023-09-16T10:55:10,265 CCompilerOpt._parse_target_tokens[1958] : policy 'MAXOPT' is ON 2023-09-16T10:55:10,274 CCompilerOpt._generate_config[2501] : generate dispatched config -> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_arithm_fp.dispatch.h 2023-09-16T10:55:10,284 CCompilerOpt.parse_targets[1763] : looking for '@targets' inside -> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_arithmetic.dispatch.c 2023-09-16T10:55:10,294 CCompilerOpt._parse_target_tokens[1934] : skip targets (AVX2 AVX512F SSE2 AVX512_SKX SSE41 VSX2) not part of baseline or dispatch-able features 2023-09-16T10:55:10,303 CCompilerOpt._parse_target_tokens[1958] : policy 'MAXOPT' is ON 2023-09-16T10:55:10,313 CCompilerOpt._generate_config[2501] : generate dispatched config -> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_arithmetic.dispatch.h 2023-09-16T10:55:10,323 CCompilerOpt._wrap_target[2463] : wrap dispatch-able target -> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_arithmetic.dispatch.neon.c 2023-09-16T10:55:10,332 CCompilerOpt.parse_targets[1763] : looking for '@targets' inside -> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_trigonometric.dispatch.c 2023-09-16T10:55:10,342 CCompilerOpt._parse_target_tokens[1934] : skip targets (VSX2 AVX512F (FMA3 AVX2)) not part of baseline or dispatch-able features 2023-09-16T10:55:10,351 CCompilerOpt._parse_target_tokens[1958] : policy 'MAXOPT' is ON 2023-09-16T10:55:10,361 CCompilerOpt._generate_config[2501] : generate dispatched config -> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_trigonometric.dispatch.h 2023-09-16T10:55:10,371 CCompilerOpt._wrap_target[2463] : wrap dispatch-able target -> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_trigonometric.dispatch.neon_vfpv4.c 2023-09-16T10:55:10,381 CCompilerOpt.parse_targets[1763] : looking for '@targets' inside -> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_exponent_log.dispatch.c 2023-09-16T10:55:10,390 CCompilerOpt._parse_target_tokens[1934] : skip targets (AVX512_SKX AVX512F (FMA3 AVX2)) not part of baseline or dispatch-able features 2023-09-16T10:55:10,400 CCompilerOpt._parse_target_tokens[1958] : policy 'MAXOPT' is ON 2023-09-16T10:55:10,409 CCompilerOpt._generate_config[2501] : generate dispatched config -> build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_exponent_log.dispatch.h 2023-09-16T10:55:10,410 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:55:10,413 creating build/temp.linux-armv7l-3.11/build/src.linux-armv7l-3.11/numpy/core/src/umath 2023-09-16T10:55:10,414 compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -DHAVE_CBLAS -DNO_ATLAS_INFO=-1 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/umath -Inumpy/core/include -Ibuild/src.linux-armv7l-3.11/numpy/core/include/numpy -Ibuild/src.linux-armv7l-3.11/numpy/distutils/include -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:55:10,415 extra options: '-O3 -mfpu=neon' 2023-09-16T10:55:10,416 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_unary_fp.dispatch.neon.c 2023-09-16T10:55:10,417 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_arithmetic.dispatch.neon.c 2023-09-16T10:55:11,239 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:11,240 from numpy/core/src/umath/loops_unary_fp.dispatch.c.src:12, 2023-09-16T10:55:11,241 from build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_unary_fp.dispatch.neon.c:8: 2023-09-16T10:55:11,242 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:11,243 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:11,244 539 | return modf@c@(x, iptr); 2023-09-16T10:55:11,245 | ^~~~ 2023-09-16T10:55:11,247 | | 2023-09-16T10:55:11,248 | npy_longdouble * {aka double *} 2023-09-16T10:55:11,249 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:11,250 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:11,251 from numpy/core/include/numpy/npy_common.h:5, 2023-09-16T10:55:11,252 from numpy/core/include/numpy/npy_math.h:8: 2023-09-16T10:55:11,253 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:11,254 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:11,255 | ^ 2023-09-16T10:55:11,296 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:11,297 from numpy/core/include/numpy/halffloat.h:5, 2023-09-16T10:55:11,298 from numpy/core/src/umath/loops_utils.h.src:5, 2023-09-16T10:55:11,300 from numpy/core/src/umath/loops_arithmetic.dispatch.c.src:12, 2023-09-16T10:55:11,301 from build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_arithmetic.dispatch.neon.c:8: 2023-09-16T10:55:11,302 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:11,303 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:11,304 539 | return modf@c@(x, iptr); 2023-09-16T10:55:11,305 | ^~~~ 2023-09-16T10:55:11,306 | | 2023-09-16T10:55:11,307 | npy_longdouble * {aka double *} 2023-09-16T10:55:11,308 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:11,309 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:11,310 from numpy/core/include/numpy/npy_common.h:5, 2023-09-16T10:55:11,312 from numpy/core/src/common/simd/simd.h:10, 2023-09-16T10:55:11,313 from numpy/core/src/umath/loops_arithmetic.dispatch.c.src:11: 2023-09-16T10:55:11,314 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:11,315 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:11,316 | ^ 2023-09-16T10:55:15,374 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:55:15,376 compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -DHAVE_CBLAS -DNO_ATLAS_INFO=-1 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/umath -Inumpy/core/include -Ibuild/src.linux-armv7l-3.11/numpy/core/include/numpy -Ibuild/src.linux-armv7l-3.11/numpy/distutils/include -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:55:15,377 extra options: '-O3' 2023-09-16T10:55:15,378 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_arithm_fp.dispatch.c 2023-09-16T10:55:15,380 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_trigonometric.dispatch.c 2023-09-16T10:55:15,383 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_arithmetic.dispatch.c 2023-09-16T10:55:15,384 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_unary_fp.dispatch.c 2023-09-16T10:55:15,854 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:15,856 from numpy/core/src/umath/loops_unary_fp.dispatch.c.src:12: 2023-09-16T10:55:15,857 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:15,859 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:15,860 539 | return modf@c@(x, iptr); 2023-09-16T10:55:15,861 | ^~~~ 2023-09-16T10:55:15,862 | | 2023-09-16T10:55:15,863 | npy_longdouble * {aka double *} 2023-09-16T10:55:15,864 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:15,865 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:15,868 from numpy/core/include/numpy/npy_common.h:5, 2023-09-16T10:55:15,869 from numpy/core/include/numpy/npy_math.h:8: 2023-09-16T10:55:15,870 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:15,871 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:15,872 | ^ 2023-09-16T10:55:15,874 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:15,875 from numpy/core/include/numpy/halffloat.h:5, 2023-09-16T10:55:15,880 from numpy/core/src/umath/loops_utils.h.src:5, 2023-09-16T10:55:15,888 from numpy/core/src/umath/loops_arithm_fp.dispatch.c.src:10: 2023-09-16T10:55:15,889 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:15,890 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:15,891 539 | return modf@c@(x, iptr); 2023-09-16T10:55:15,893 | ^~~~ 2023-09-16T10:55:15,894 | | 2023-09-16T10:55:15,895 | npy_longdouble * {aka double *} 2023-09-16T10:55:15,896 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:15,909 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:15,910 from numpy/core/include/numpy/npy_common.h:5, 2023-09-16T10:55:15,911 from numpy/core/src/common/simd/simd.h:10, 2023-09-16T10:55:15,912 from numpy/core/src/umath/loops_arithm_fp.dispatch.c.src:9: 2023-09-16T10:55:15,913 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:15,914 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:15,915 | ^ 2023-09-16T10:55:15,917 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:15,918 from numpy/core/src/umath/loops_trigonometric.dispatch.c.src:7: 2023-09-16T10:55:15,919 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:15,920 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:15,921 539 | return modf@c@(x, iptr); 2023-09-16T10:55:15,922 | ^~~~ 2023-09-16T10:55:15,923 | | 2023-09-16T10:55:15,924 | npy_longdouble * {aka double *} 2023-09-16T10:55:15,925 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:15,931 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:15,937 from numpy/core/include/numpy/npy_common.h:5, 2023-09-16T10:55:15,938 from numpy/core/include/numpy/npy_math.h:8: 2023-09-16T10:55:15,939 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:15,940 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:15,941 | ^ 2023-09-16T10:55:15,964 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:15,965 from numpy/core/include/numpy/halffloat.h:5, 2023-09-16T10:55:15,967 from numpy/core/src/umath/loops_utils.h.src:5, 2023-09-16T10:55:15,968 from numpy/core/src/umath/loops_arithmetic.dispatch.c.src:12: 2023-09-16T10:55:15,969 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:15,972 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:15,973 539 | return modf@c@(x, iptr); 2023-09-16T10:55:15,974 | ^~~~ 2023-09-16T10:55:15,975 | | 2023-09-16T10:55:15,977 | npy_longdouble * {aka double *} 2023-09-16T10:55:15,987 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:15,988 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:15,989 from numpy/core/include/numpy/npy_common.h:5, 2023-09-16T10:55:15,990 from numpy/core/src/common/simd/simd.h:10, 2023-09-16T10:55:15,992 from numpy/core/src/umath/loops_arithmetic.dispatch.c.src:11: 2023-09-16T10:55:15,993 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:15,994 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:15,995 | ^ 2023-09-16T10:55:16,167 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_exponent_log.dispatch.c 2023-09-16T10:55:16,674 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:16,675 from numpy/core/src/umath/loops_exponent_log.dispatch.c.src:12: 2023-09-16T10:55:16,676 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:16,677 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:16,678 539 | return modf@c@(x, iptr); 2023-09-16T10:55:16,679 | ^~~~ 2023-09-16T10:55:16,681 | | 2023-09-16T10:55:16,682 | npy_longdouble * {aka double *} 2023-09-16T10:55:16,683 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:16,684 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:16,685 from numpy/core/include/numpy/npy_common.h:5, 2023-09-16T10:55:16,696 from numpy/core/include/numpy/npy_math.h:8: 2023-09-16T10:55:16,697 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:16,699 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:16,700 | ^ 2023-09-16T10:55:17,570 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:55:17,573 compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -DHAVE_CBLAS -DNO_ATLAS_INFO=-1 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/umath -Inumpy/core/include -Ibuild/src.linux-armv7l-3.11/numpy/core/include/numpy -Ibuild/src.linux-armv7l-3.11/numpy/distutils/include -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:55:17,574 extra options: '-O3 -mfp16-format=ieee -mfpu=neon-vfpv4' 2023-09-16T10:55:17,576 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_trigonometric.dispatch.neon_vfpv4.c 2023-09-16T10:55:18,361 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:18,362 from numpy/core/src/umath/loops_trigonometric.dispatch.c.src:7, 2023-09-16T10:55:18,363 from build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_trigonometric.dispatch.neon_vfpv4.c:10: 2023-09-16T10:55:18,364 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:18,365 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:18,366 539 | return modf@c@(x, iptr); 2023-09-16T10:55:18,367 | ^~~~ 2023-09-16T10:55:18,368 | | 2023-09-16T10:55:18,369 | npy_longdouble * {aka double *} 2023-09-16T10:55:18,370 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:18,371 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:18,372 from numpy/core/include/numpy/npy_common.h:5, 2023-09-16T10:55:18,373 from numpy/core/include/numpy/npy_math.h:8: 2023-09-16T10:55:18,374 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:18,375 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:18,376 | ^ 2023-09-16T10:55:19,295 compiling C sources 2023-09-16T10:55:19,296 C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-16T10:55:19,298 creating build/temp.linux-armv7l-3.11/numpy/core/src/multiarray 2023-09-16T10:55:19,299 creating build/temp.linux-armv7l-3.11/build/src.linux-armv7l-3.11/numpy/core/src/npysort 2023-09-16T10:55:19,300 creating build/temp.linux-armv7l-3.11/numpy/core/src/umath 2023-09-16T10:55:19,301 creating build/temp.linux-armv7l-3.11/build/src.linux-armv7l-3.11/numpy/core/src/common 2023-09-16T10:55:19,302 compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -DHAVE_CBLAS -DNO_ATLAS_INFO=-1 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/umath -Inumpy/core/include -Ibuild/src.linux-armv7l-3.11/numpy/core/include/numpy -Ibuild/src.linux-armv7l-3.11/numpy/distutils/include -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c' 2023-09-16T10:55:19,305 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/array_method.c 2023-09-16T10:55:19,306 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/calculation.c 2023-09-16T10:55:19,310 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/convert_datatype.c 2023-09-16T10:55:19,314 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/abstractdtypes.c 2023-09-16T10:55:19,908 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:19,909 from numpy/core/src/multiarray/convert_datatype.c:14: 2023-09-16T10:55:19,910 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:19,913 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:19,914 539 | return modf@c@(x, iptr); 2023-09-16T10:55:19,916 | ^~~~ 2023-09-16T10:55:19,917 | | 2023-09-16T10:55:19,918 | npy_longdouble * {aka double *} 2023-09-16T10:55:19,937 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:19,938 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:19,940 from numpy/core/src/multiarray/convert_datatype.c:2: 2023-09-16T10:55:19,941 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:19,942 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:19,944 | ^ 2023-09-16T10:55:20,032 In file included from numpy/core/src/common/npy_cpu_dispatch.h:8, 2023-09-16T10:55:20,033 from numpy/core/src/common/npy_config.h:6, 2023-09-16T10:55:20,035 from numpy/core/include/numpy/npy_common.h:10, 2023-09-16T10:55:20,036 from numpy/core/include/numpy/ndarraytypes.h:4, 2023-09-16T10:55:20,037 from numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-16T10:55:20,038 from numpy/core/include/numpy/arrayobject.h:4, 2023-09-16T10:55:20,039 from numpy/core/src/multiarray/convert_datatype.c:7: 2023-09-16T10:55:20,040 numpy/core/src/multiarray/convert_datatype.c: At top level: 2023-09-16T10:55:20,043 numpy/core/include/numpy/utils.h:27:24: warning: argument 2 of type ‘PyArray_DTypeMeta *[2]’ {aka ‘struct PyArray_DTypeMeta_tag *[2]’} with mismatched bound [-Warray-parameter=] 2023-09-16T10:55:20,044 27 | #define NPY_UNUSED(x) (__NPY_UNUSED_TAGGED ## x) __COMP_NPY_UNUSED 2023-09-16T10:55:20,045 numpy/core/src/multiarray/convert_datatype.c:2256:28: note: in expansion of macro ‘NPY_UNUSED’ 2023-09-16T10:55:20,047 2256 | PyArray_DTypeMeta *NPY_UNUSED(dtypes[2]), 2023-09-16T10:55:20,048 | ^~~~~~~~~~ 2023-09-16T10:55:20,057 In file included from numpy/core/src/multiarray/convert_datatype.c:26: 2023-09-16T10:55:20,058 numpy/core/src/multiarray/convert_datatype.h:77:29: note: previously declared as ‘PyArray_DTypeMeta **’ {aka ‘struct PyArray_DTypeMeta_tag **’} 2023-09-16T10:55:20,059 77 | PyArray_DTypeMeta **dtypes, 2023-09-16T10:55:20,061 | ~~~~~~~~~~~~~~~~~~~~^~~~~~ 2023-09-16T10:55:20,062 numpy/core/src/multiarray/convert_datatype.c:2257:24: warning: argument 3 of type ‘PyArray_Descr *[2]’ {aka ‘struct _PyArray_Descr *[2]’} with mismatched bound [-Warray-parameter=] 2023-09-16T10:55:20,063 2257 | PyArray_Descr *given_descrs[2], 2023-09-16T10:55:20,064 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-16T10:55:20,065 numpy/core/src/multiarray/convert_datatype.h:78:25: note: previously declared as ‘PyArray_Descr **’ {aka ‘struct _PyArray_Descr **’} 2023-09-16T10:55:20,076 78 | PyArray_Descr **given_descrs, 2023-09-16T10:55:20,077 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-16T10:55:20,079 numpy/core/src/multiarray/convert_datatype.c:2258:24: warning: argument 4 of type ‘PyArray_Descr *[2]’ {aka ‘struct _PyArray_Descr *[2]’} with mismatched bound [-Warray-parameter=] 2023-09-16T10:55:20,080 2258 | PyArray_Descr *loop_descrs[2]) 2023-09-16T10:55:20,081 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2023-09-16T10:55:20,082 numpy/core/src/multiarray/convert_datatype.h:79:25: note: previously declared as ‘PyArray_Descr **’ {aka ‘struct _PyArray_Descr **’} 2023-09-16T10:55:20,083 79 | PyArray_Descr **loop_descrs); 2023-09-16T10:55:20,084 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ 2023-09-16T10:55:20,085 numpy/core/src/multiarray/convert_datatype.c:2321:28: warning: argument 2 of type ‘PyArray_DTypeMeta *[2]’ {aka ‘struct PyArray_DTypeMeta_tag *[2]’} with mismatched bound [-Warray-parameter=] 2023-09-16T10:55:20,097 2321 | PyArray_DTypeMeta *dtypes[2], 2023-09-16T10:55:20,098 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2023-09-16T10:55:20,099 numpy/core/src/multiarray/convert_datatype.h:91:29: note: previously declared as ‘PyArray_DTypeMeta **’ {aka ‘struct PyArray_DTypeMeta_tag **’} 2023-09-16T10:55:20,100 91 | PyArray_DTypeMeta **dtypes, 2023-09-16T10:55:20,101 | ~~~~~~~~~~~~~~~~~~~~^~~~~~ 2023-09-16T10:55:20,102 numpy/core/src/multiarray/convert_datatype.c:2322:24: warning: argument 3 of type ‘PyArray_Descr *[2]’ {aka ‘struct _PyArray_Descr *[2]’} with mismatched bound [-Warray-parameter=] 2023-09-16T10:55:20,103 2322 | PyArray_Descr *given_descrs[2], 2023-09-16T10:55:20,104 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-16T10:55:20,105 numpy/core/src/multiarray/convert_datatype.h:92:25: note: previously declared as ‘PyArray_Descr **’ {aka ‘struct _PyArray_Descr **’} 2023-09-16T10:55:20,116 92 | PyArray_Descr **input_descrs, 2023-09-16T10:55:20,117 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-16T10:55:20,119 numpy/core/src/multiarray/convert_datatype.c:2323:24: warning: argument 4 of type ‘PyArray_Descr *[2]’ {aka ‘struct _PyArray_Descr *[2]’} with mismatched bound [-Warray-parameter=] 2023-09-16T10:55:20,120 2323 | PyArray_Descr *loop_descrs[2]) 2023-09-16T10:55:20,121 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2023-09-16T10:55:20,122 numpy/core/src/multiarray/convert_datatype.h:93:25: note: previously declared as ‘PyArray_Descr **’ {aka ‘struct _PyArray_Descr **’} 2023-09-16T10:55:20,123 93 | PyArray_Descr **loop_descrs); 2023-09-16T10:55:20,124 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ 2023-09-16T10:55:20,224 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/alloc.c 2023-09-16T10:55:20,871 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/array_assign_scalar.c 2023-09-16T10:55:20,934 In function ‘PyDataMem_FREE’, 2023-09-16T10:55:20,935 inlined from ‘PyDataMem_FREE’ at numpy/core/src/multiarray/alloc.c:286:1, 2023-09-16T10:55:20,936 inlined from ‘_npy_free_cache’ at numpy/core/src/multiarray/alloc.c:128:5, 2023-09-16T10:55:20,937 inlined from ‘npy_free_cache’ at numpy/core/src/multiarray/alloc.c:163:5: 2023-09-16T10:55:20,938 numpy/core/src/multiarray/alloc.c:294:14: warning: pointer ‘p’ may be used after ‘free’ [-Wuse-after-free] 2023-09-16T10:55:20,939 294 | (*_PyDataMem_eventhook)(ptr, NULL, 0, 2023-09-16T10:55:20,940 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-16T10:55:20,941 295 | _PyDataMem_eventhook_user_data); 2023-09-16T10:55:20,942 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-16T10:55:20,943 In function ‘PyDataMem_FREE’, 2023-09-16T10:55:20,944 inlined from ‘_npy_free_cache’ at numpy/core/src/multiarray/alloc.c:128:5, 2023-09-16T10:55:20,945 inlined from ‘npy_free_cache’ at numpy/core/src/multiarray/alloc.c:163:5: 2023-09-16T10:55:20,957 numpy/core/src/multiarray/alloc.c:289:5: note: call to ‘free’ here 2023-09-16T10:55:20,958 289 | free(ptr); 2023-09-16T10:55:20,959 | ^~~~~~~~~ 2023-09-16T10:55:21,109 In function ‘PyDataMem_FREE’, 2023-09-16T10:55:21,110 inlined from ‘PyDataMem_FREE’ at numpy/core/src/multiarray/alloc.c:286:1: 2023-09-16T10:55:21,112 numpy/core/src/multiarray/alloc.c:294:14: warning: pointer ‘ptr’ may be used after ‘free’ [-Wuse-after-free] 2023-09-16T10:55:21,113 294 | (*_PyDataMem_eventhook)(ptr, NULL, 0, 2023-09-16T10:55:21,114 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-16T10:55:21,115 295 | _PyDataMem_eventhook_user_data); 2023-09-16T10:55:21,116 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-16T10:55:21,117 numpy/core/src/multiarray/alloc.c: In function ‘PyDataMem_FREE’: 2023-09-16T10:55:21,118 numpy/core/src/multiarray/alloc.c:289:5: note: call to ‘free’ here 2023-09-16T10:55:21,119 289 | free(ptr); 2023-09-16T10:55:21,120 | ^~~~~~~~~ 2023-09-16T10:55:21,128 numpy/core/src/multiarray/alloc.c: In function ‘PyDataMem_RENEW’: 2023-09-16T10:55:21,129 numpy/core/src/multiarray/alloc.c:312:9: warning: pointer ‘ptr’ may be used after ‘realloc’ [-Wuse-after-free] 2023-09-16T10:55:21,130 312 | PyTraceMalloc_Untrack(NPY_TRACE_DOMAIN, (npy_uintp)ptr); 2023-09-16T10:55:21,131 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-16T10:55:21,132 numpy/core/src/multiarray/alloc.c:310:14: note: call to ‘realloc’ here 2023-09-16T10:55:21,134 310 | result = realloc(ptr, size); 2023-09-16T10:55:21,135 | ^~~~~~~~~~~~~~~~~~ 2023-09-16T10:55:21,136 numpy/core/src/multiarray/alloc.c:319:14: warning: pointer ‘ptr’ may be used after ‘realloc’ [-Wuse-after-free] 2023-09-16T10:55:21,137 319 | (*_PyDataMem_eventhook)(ptr, result, size, 2023-09-16T10:55:21,138 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-16T10:55:21,139 320 | _PyDataMem_eventhook_user_data); 2023-09-16T10:55:21,140 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-16T10:55:21,141 numpy/core/src/multiarray/alloc.c:310:14: note: call to ‘realloc’ here 2023-09-16T10:55:21,142 310 | result = realloc(ptr, size); 2023-09-16T10:55:21,143 | ^~~~~~~~~~~~~~~~~~ 2023-09-16T10:55:21,194 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/arrayobject.c 2023-09-16T10:55:21,808 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/compiled_base.c 2023-09-16T10:55:22,074 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/array_assign_array.c 2023-09-16T10:55:22,471 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:22,472 from numpy/core/src/multiarray/compiled_base.c:9: 2023-09-16T10:55:22,473 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:22,474 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:22,475 539 | return modf@c@(x, iptr); 2023-09-16T10:55:22,476 | ^~~~ 2023-09-16T10:55:22,477 | | 2023-09-16T10:55:22,478 | npy_longdouble * {aka double *} 2023-09-16T10:55:22,479 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:22,480 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:22,481 from numpy/core/src/multiarray/compiled_base.c:2: 2023-09-16T10:55:22,483 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:22,484 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:22,485 | ^ 2023-09-16T10:55:23,242 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/arrayfunction_override.c 2023-09-16T10:55:23,697 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/conversion_utils.c 2023-09-16T10:55:24,692 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/buffer.c 2023-09-16T10:55:25,408 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/ctors.c 2023-09-16T10:55:25,751 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/multiarray/arraytypes.c 2023-09-16T10:55:26,045 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:26,046 from numpy/core/src/multiarray/ctors.c:10: 2023-09-16T10:55:26,047 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:26,050 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:26,051 539 | return modf@c@(x, iptr); 2023-09-16T10:55:26,052 | ^~~~ 2023-09-16T10:55:26,053 | | 2023-09-16T10:55:26,054 | npy_longdouble * {aka double *} 2023-09-16T10:55:26,057 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:26,058 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:26,059 from numpy/core/src/multiarray/ctors.c:2: 2023-09-16T10:55:26,067 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:26,068 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:26,069 | ^ 2023-09-16T10:55:26,204 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/common.c 2023-09-16T10:55:26,395 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:26,396 from numpy/core/src/multiarray/arraytypes.c.src:16: 2023-09-16T10:55:26,397 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:26,399 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:26,400 539 | return modf@c@(x, iptr); 2023-09-16T10:55:26,401 | ^~~~ 2023-09-16T10:55:26,402 | | 2023-09-16T10:55:26,403 | npy_longdouble * {aka double *} 2023-09-16T10:55:26,404 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:26,405 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:26,416 from numpy/core/src/multiarray/arraytypes.c.src:3: 2023-09-16T10:55:26,417 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:26,418 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:26,419 | ^ 2023-09-16T10:55:26,561 numpy/core/src/multiarray/arraytypes.c.src: In function ‘get_dummy_stack_array’: 2023-09-16T10:55:26,562 numpy/core/src/multiarray/arraytypes.c.src:65:26: error: lvalue required as left operand of assignment 2023-09-16T10:55:26,563 65 | Py_TYPE(&new_fields) = NULL; 2023-09-16T10:55:26,564 | ^ 2023-09-16T10:55:26,615 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/datetime_busday.c 2023-09-16T10:55:27,421 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/dtype_transfer.c 2023-09-16T10:55:27,489 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/common_dtype.c 2023-09-16T10:55:28,417 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/convert.c 2023-09-16T10:55:29,308 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/datetime_busdaycal.c 2023-09-16T10:55:29,905 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/hashdescr.c 2023-09-16T10:55:30,564 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/descriptor.c 2023-09-16T10:55:30,826 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/item_selection.c 2023-09-16T10:55:30,959 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/datetime.c 2023-09-16T10:55:31,425 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:31,426 from numpy/core/src/multiarray/item_selection.c:11: 2023-09-16T10:55:31,427 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:31,429 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:31,430 539 | return modf@c@(x, iptr); 2023-09-16T10:55:31,432 | ^~~~ 2023-09-16T10:55:31,433 | | 2023-09-16T10:55:31,434 | npy_longdouble * {aka double *} 2023-09-16T10:55:31,437 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:31,438 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:31,439 from numpy/core/src/multiarray/item_selection.c:2: 2023-09-16T10:55:31,441 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:31,442 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:31,443 | ^ 2023-09-16T10:55:33,355 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/multiarray/einsum.c 2023-09-16T10:55:35,743 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/multiarray/einsum_sumprod.c 2023-09-16T10:55:36,011 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/dtypemeta.c 2023-09-16T10:55:36,356 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:36,357 from numpy/core/include/numpy/halffloat.h:5, 2023-09-16T10:55:36,358 from numpy/core/src/multiarray/einsum_sumprod.c.src:16: 2023-09-16T10:55:36,360 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:36,362 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:36,364 539 | return modf@c@(x, iptr); 2023-09-16T10:55:36,365 | ^~~~ 2023-09-16T10:55:36,367 | | 2023-09-16T10:55:36,368 | npy_longdouble * {aka double *} 2023-09-16T10:55:36,380 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:36,381 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:36,382 from numpy/core/include/numpy/npy_common.h:5, 2023-09-16T10:55:36,383 from numpy/core/src/multiarray/einsum_sumprod.c.src:14: 2023-09-16T10:55:36,384 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:36,385 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:36,386 | ^ 2023-09-16T10:55:36,527 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/datetime_strings.c 2023-09-16T10:55:37,352 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/dragon4.c 2023-09-16T10:55:38,412 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/iterators.c 2023-09-16T10:55:38,911 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/mapping.c 2023-09-16T10:55:40,771 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/nditer_constr.c 2023-09-16T10:55:42,035 numpy/core/src/multiarray/nditer_constr.c: In function ‘npyiter_replace_axisdata’: 2023-09-16T10:55:42,039 numpy/core/src/multiarray/nditer_constr.c:2025:32: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 2023-09-16T10:55:42,040 2025 | NIT_BASEOFFSETS(iter)[iop] = baseoffset; 2023-09-16T10:55:42,045 In file included from numpy/core/src/multiarray/nditer_constr.c:16: 2023-09-16T10:55:42,046 numpy/core/src/multiarray/nditer_impl.h:149:10: note: at offset [36, 3096] into destination object ‘iter_flexdata’ of size 1 2023-09-16T10:55:42,047 149 | char iter_flexdata; 2023-09-16T10:55:42,048 | ^~~~~~~~~~~~~ 2023-09-16T10:55:42,667 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/legacy_dtype_implementation.c 2023-09-16T10:55:43,780 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/multiarray/lowlevel_strided_loops.c 2023-09-16T10:55:44,064 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/methods.c 2023-09-16T10:55:44,452 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:44,453 from numpy/core/include/numpy/halffloat.h:5, 2023-09-16T10:55:44,453 from numpy/core/src/multiarray/lowlevel_strided_loops.c.src:18: 2023-09-16T10:55:44,454 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:44,457 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:44,459 539 | return modf@c@(x, iptr); 2023-09-16T10:55:44,461 | ^~~~ 2023-09-16T10:55:44,463 | | 2023-09-16T10:55:44,477 | npy_longdouble * {aka double *} 2023-09-16T10:55:44,479 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:44,482 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:44,484 from numpy/core/src/multiarray/lowlevel_strided_loops.c.src:12: 2023-09-16T10:55:44,486 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:44,489 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:44,491 | ^ 2023-09-16T10:55:46,419 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/nditer_pywrap.c 2023-09-16T10:55:48,962 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/multiarraymodule.c 2023-09-16T10:55:49,596 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:49,597 from numpy/core/src/multiarray/multiarraymodule.c:28: 2023-09-16T10:55:49,598 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:49,600 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:49,601 539 | return modf@c@(x, iptr); 2023-09-16T10:55:49,602 | ^~~~ 2023-09-16T10:55:49,603 | | 2023-09-16T10:55:49,605 | npy_longdouble * {aka double *} 2023-09-16T10:55:49,606 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:49,617 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:49,619 from numpy/core/src/multiarray/multiarraymodule.c:18: 2023-09-16T10:55:49,620 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:49,621 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:49,623 | ^ 2023-09-16T10:55:50,142 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/number.c 2023-09-16T10:55:51,969 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/flagsobject.c 2023-09-16T10:55:53,266 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/refcount.c 2023-09-16T10:55:54,238 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/getset.c 2023-09-16T10:55:54,627 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/sequence.c 2023-09-16T10:55:55,337 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/shape.c 2023-09-16T10:55:55,963 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:55,964 from numpy/core/src/multiarray/shape.c:10: 2023-09-16T10:55:55,965 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:55,968 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:55,969 539 | return modf@c@(x, iptr); 2023-09-16T10:55:55,971 | ^~~~ 2023-09-16T10:55:55,972 | | 2023-09-16T10:55:55,973 | npy_longdouble * {aka double *} 2023-09-16T10:55:55,984 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:55,986 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:55,987 from numpy/core/src/multiarray/shape.c:2: 2023-09-16T10:55:55,989 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:55,990 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:55,992 | ^ 2023-09-16T10:55:56,328 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/typeinfo.c 2023-09-16T10:55:57,367 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/usertypes.c 2023-09-16T10:55:57,454 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/scalarapi.c 2023-09-16T10:55:58,206 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:58,208 from numpy/core/src/multiarray/scalarapi.c:10: 2023-09-16T10:55:58,209 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:58,210 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:58,211 539 | return modf@c@(x, iptr); 2023-09-16T10:55:58,212 | ^~~~ 2023-09-16T10:55:58,214 | | 2023-09-16T10:55:58,215 | npy_longdouble * {aka double *} 2023-09-16T10:55:58,226 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:55:58,228 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:55:58,229 from numpy/core/src/multiarray/scalarapi.c:2: 2023-09-16T10:55:58,230 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:55:58,231 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:55:58,233 | ^ 2023-09-16T10:55:58,301 numpy/core/src/multiarray/scalarapi.c: In function ‘PyArray_Scalar’: 2023-09-16T10:55:58,302 numpy/core/src/multiarray/scalarapi.c:767:13: warning: ‘ob_shash’ is deprecated [-Wdeprecated-declarations] 2023-09-16T10:55:58,303 767 | ((PyBytesObject *)obj)->ob_shash = -1; 2023-09-16T10:55:58,305 | ^ 2023-09-16T10:55:58,308 In file included from /usr/include/python3.11/bytesobject.h:62, 2023-09-16T10:55:58,310 from /usr/include/python3.11/Python.h:50: 2023-09-16T10:55:58,327 /usr/include/python3.11/cpython/bytesobject.h:7:35: note: declared here 2023-09-16T10:55:58,328 7 | Py_DEPRECATED(3.11) Py_hash_t ob_shash; 2023-09-16T10:55:58,329 | ^~~~~~~~ 2023-09-16T10:55:58,599 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/vdot.c 2023-09-16T10:55:59,362 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/multiarray/scalartypes.c 2023-09-16T10:55:59,443 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/npysort/quicksort.c 2023-09-16T10:55:59,980 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:55:59,981 from numpy/core/src/multiarray/scalartypes.c.src:12: 2023-09-16T10:55:59,983 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:55:59,985 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:55:59,987 539 | return modf@c@(x, iptr); 2023-09-16T10:55:59,988 | ^~~~ 2023-09-16T10:55:59,989 | | 2023-09-16T10:55:59,990 | npy_longdouble * {aka double *} 2023-09-16T10:56:00,007 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:56:00,008 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:56:00,009 from numpy/core/src/multiarray/scalartypes.c.src:3: 2023-09-16T10:56:00,011 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:56:00,012 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:56:00,013 | ^ 2023-09-16T10:56:04,934 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/multiarray/nditer_templ.c 2023-09-16T10:56:09,360 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/nditer_api.c 2023-09-16T10:56:09,520 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/strfuncs.c 2023-09-16T10:56:09,632 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/npysort/mergesort.c 2023-09-16T10:56:10,330 arm-linux-gnueabihf-gcc: numpy/core/src/multiarray/temp_elide.c 2023-09-16T10:56:11,292 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/npysort/timsort.c 2023-09-16T10:56:13,783 arm-linux-gnueabihf-gcc: numpy/core/src/umath/umathmodule.c 2023-09-16T10:56:14,402 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:56:14,403 from numpy/core/include/numpy/ufuncobject.h:4, 2023-09-16T10:56:14,404 from numpy/core/src/umath/umathmodule.c:27: 2023-09-16T10:56:14,405 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:56:14,407 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:56:14,408 539 | return modf@c@(x, iptr); 2023-09-16T10:56:14,409 | ^~~~ 2023-09-16T10:56:14,411 | | 2023-09-16T10:56:14,412 | npy_longdouble * {aka double *} 2023-09-16T10:56:14,413 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:56:14,414 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:56:14,416 from numpy/core/src/umath/umathmodule.c:22: 2023-09-16T10:56:14,427 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:56:14,428 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:56:14,430 | ^ 2023-09-16T10:56:14,818 arm-linux-gnueabihf-gcc: numpy/core/src/umath/reduction.c 2023-09-16T10:56:15,417 arm-linux-gnueabihf-gcc: numpy/core/src/umath/ufunc_object.c 2023-09-16T10:56:15,480 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:56:15,482 from numpy/core/include/numpy/ufuncobject.h:4, 2023-09-16T10:56:15,483 from numpy/core/src/umath/reduction.c:22: 2023-09-16T10:56:15,484 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:56:15,486 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:56:15,488 539 | return modf@c@(x, iptr); 2023-09-16T10:56:15,489 | ^~~~ 2023-09-16T10:56:15,492 | | 2023-09-16T10:56:15,497 | npy_longdouble * {aka double *} 2023-09-16T10:56:15,499 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:56:15,502 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:56:15,505 from numpy/core/src/umath/reduction.c:14: 2023-09-16T10:56:15,508 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:56:15,512 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:56:15,514 | ^ 2023-09-16T10:56:15,887 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/umath/loops.c 2023-09-16T10:56:16,116 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:56:16,118 from numpy/core/include/numpy/ufuncobject.h:4, 2023-09-16T10:56:16,119 from numpy/core/src/umath/ufunc_object.c:38: 2023-09-16T10:56:16,120 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:56:16,121 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:56:16,122 539 | return modf@c@(x, iptr); 2023-09-16T10:56:16,124 | ^~~~ 2023-09-16T10:56:16,133 | | 2023-09-16T10:56:16,135 | npy_longdouble * {aka double *} 2023-09-16T10:56:16,136 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:56:16,137 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:56:16,138 from numpy/core/src/umath/ufunc_object.c:30: 2023-09-16T10:56:16,139 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:56:16,140 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:56:16,141 | ^ 2023-09-16T10:56:16,730 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:56:16,731 from numpy/core/include/numpy/ufuncobject.h:4, 2023-09-16T10:56:16,732 from numpy/core/src/umath/loops.c.src:12: 2023-09-16T10:56:16,734 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:56:16,737 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:56:16,738 539 | return modf@c@(x, iptr); 2023-09-16T10:56:16,739 | ^~~~ 2023-09-16T10:56:16,741 | | 2023-09-16T10:56:16,742 | npy_longdouble * {aka double *} 2023-09-16T10:56:16,747 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:56:16,748 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:56:16,767 from numpy/core/src/umath/loops.c.src:7: 2023-09-16T10:56:16,768 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:56:16,770 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:56:16,771 | ^ 2023-09-16T10:56:25,610 arm-linux-gnueabihf-gcc: numpy/core/src/umath/extobj.c 2023-09-16T10:56:26,299 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:56:26,300 from numpy/core/include/numpy/ufuncobject.h:4, 2023-09-16T10:56:26,302 from numpy/core/src/umath/extobj.c:12: 2023-09-16T10:56:26,303 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:56:26,305 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:56:26,306 539 | return modf@c@(x, iptr); 2023-09-16T10:56:26,308 | ^~~~ 2023-09-16T10:56:26,309 | | 2023-09-16T10:56:26,311 | npy_longdouble * {aka double *} 2023-09-16T10:56:26,312 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:56:26,314 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:56:26,315 from numpy/core/src/umath/extobj.c:5: 2023-09-16T10:56:26,327 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:56:26,328 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:56:26,330 | ^ 2023-09-16T10:56:26,875 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/umath/scalarmath.c 2023-09-16T10:56:27,842 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:56:27,844 from numpy/core/include/numpy/ufuncobject.h:4, 2023-09-16T10:56:27,846 from numpy/core/src/umath/scalarmath.c.src:16: 2023-09-16T10:56:27,848 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:56:27,850 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:56:27,852 539 | return modf@c@(x, iptr); 2023-09-16T10:56:27,854 | ^~~~ 2023-09-16T10:56:27,856 | | 2023-09-16T10:56:27,868 | npy_longdouble * {aka double *} 2023-09-16T10:56:27,870 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:56:27,872 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:56:27,874 from numpy/core/src/umath/scalarmath.c.src:13: 2023-09-16T10:56:27,886 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:56:27,888 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:56:27,890 | ^ 2023-09-16T10:56:34,590 arm-linux-gnueabihf-gcc: numpy/core/src/common/array_assign.c 2023-09-16T10:56:35,451 arm-linux-gnueabihf-gcc: numpy/core/src/common/mem_overlap.c 2023-09-16T10:56:38,539 arm-linux-gnueabihf-gcc: numpy/core/src/common/npy_argparse.c 2023-09-16T10:56:39,558 arm-linux-gnueabihf-gcc: numpy/core/src/common/npy_longdouble.c 2023-09-16T10:56:40,164 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:56:40,165 from numpy/core/src/common/npy_longdouble.c:7: 2023-09-16T10:56:40,166 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:56:40,171 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:56:40,172 539 | return modf@c@(x, iptr); 2023-09-16T10:56:40,173 | ^~~~ 2023-09-16T10:56:40,174 | | 2023-09-16T10:56:40,175 | npy_longdouble * {aka double *} 2023-09-16T10:56:40,176 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:56:40,177 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:56:40,179 from numpy/core/src/common/npy_longdouble.c:1: 2023-09-16T10:56:40,187 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:56:40,189 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:56:40,191 | ^ 2023-09-16T10:56:40,506 arm-linux-gnueabihf-gcc: numpy/core/src/common/ucsnarrow.c 2023-09-16T10:56:40,676 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/npysort/heapsort.c 2023-09-16T10:56:41,171 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:56:41,171 from numpy/core/src/common/ucsnarrow.c:11: 2023-09-16T10:56:41,172 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:56:41,174 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:56:41,176 539 | return modf@c@(x, iptr); 2023-09-16T10:56:41,178 | ^~~~ 2023-09-16T10:56:41,180 | | 2023-09-16T10:56:41,182 | npy_longdouble * {aka double *} 2023-09-16T10:56:41,188 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:56:41,190 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:56:41,192 from numpy/core/src/common/ucsnarrow.c:4: 2023-09-16T10:56:41,198 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:56:41,201 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:56:41,203 | ^ 2023-09-16T10:56:41,317 arm-linux-gnueabihf-gcc: numpy/core/src/common/ufunc_override.c 2023-09-16T10:56:42,088 arm-linux-gnueabihf-gcc: numpy/core/src/common/numpyos.c 2023-09-16T10:56:42,702 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:56:42,703 from numpy/core/src/common/numpyos.c:10: 2023-09-16T10:56:42,704 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:56:42,706 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:56:42,707 539 | return modf@c@(x, iptr); 2023-09-16T10:56:42,708 | ^~~~ 2023-09-16T10:56:42,709 | | 2023-09-16T10:56:42,711 | npy_longdouble * {aka double *} 2023-09-16T10:56:42,712 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:56:42,713 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:56:42,714 from numpy/core/src/common/numpyos.c:2: 2023-09-16T10:56:42,716 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:56:42,727 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:56:42,728 | ^ 2023-09-16T10:56:43,637 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/common/npy_cpu_features.c 2023-09-16T10:56:45,130 arm-linux-gnueabihf-gcc: numpy/core/src/common/cblasfuncs.c 2023-09-16T10:56:46,839 arm-linux-gnueabihf-gcc: numpy/core/src/common/python_xerbla.c 2023-09-16T10:56:47,870 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/npysort/radixsort.c 2023-09-16T10:56:48,275 arm-linux-gnueabihf-gcc: numpy/core/src/umath/ufunc_type_resolution.c 2023-09-16T10:56:48,821 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:56:48,823 from numpy/core/include/numpy/ufuncobject.h:4, 2023-09-16T10:56:48,824 from numpy/core/src/umath/ufunc_type_resolution.c:28: 2023-09-16T10:56:48,825 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:56:48,827 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:56:48,828 539 | return modf@c@(x, iptr); 2023-09-16T10:56:48,829 | ^~~~ 2023-09-16T10:56:48,830 | | 2023-09-16T10:56:48,831 | npy_longdouble * {aka double *} 2023-09-16T10:56:48,837 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:56:48,838 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:56:48,839 from numpy/core/src/umath/ufunc_type_resolution.c:22: 2023-09-16T10:56:48,841 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:56:48,842 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:56:48,843 | ^ 2023-09-16T10:56:51,030 arm-linux-gnueabihf-gcc: numpy/core/src/umath/override.c 2023-09-16T10:56:51,249 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/npysort/selection.c 2023-09-16T10:56:51,558 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:56:51,559 from numpy/core/include/numpy/ufuncobject.h:4, 2023-09-16T10:56:51,560 from numpy/core/src/umath/override.c:5: 2023-09-16T10:56:51,561 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:56:51,563 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:56:51,564 539 | return modf@c@(x, iptr); 2023-09-16T10:56:51,565 | ^~~~ 2023-09-16T10:56:51,566 | | 2023-09-16T10:56:51,567 | npy_longdouble * {aka double *} 2023-09-16T10:56:51,568 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:56:51,569 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:56:51,570 from numpy/core/include/numpy/npy_3kcompat.h:13, 2023-09-16T10:56:51,571 from numpy/core/src/common/npy_pycompat.h:4, 2023-09-16T10:56:51,572 from numpy/core/src/umath/override.c:4: 2023-09-16T10:56:51,573 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:56:51,574 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:56:51,575 | ^ 2023-09-16T10:56:51,765 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:56:51,767 from numpy/core/src/npysort/selection.c.src:21: 2023-09-16T10:56:51,768 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:56:51,769 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:56:51,770 539 | return modf@c@(x, iptr); 2023-09-16T10:56:51,771 | ^~~~ 2023-09-16T10:56:51,772 | | 2023-09-16T10:56:51,774 | npy_longdouble * {aka double *} 2023-09-16T10:56:51,775 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:56:51,776 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:56:51,777 from numpy/core/src/common/npy_sort.h.src:5, 2023-09-16T10:56:51,778 from numpy/core/src/npysort/selection.c.src:19: 2023-09-16T10:56:51,779 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:56:51,780 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:56:51,781 | ^ 2023-09-16T10:57:06,384 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/npysort/binsearch.c 2023-09-16T10:57:16,520 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/umath/matmul.c 2023-09-16T10:57:17,014 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:57:17,014 from numpy/core/include/numpy/ufuncobject.h:4, 2023-09-16T10:57:17,016 from numpy/core/src/umath/matmul.c.src:12: 2023-09-16T10:57:17,016 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:57:17,017 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:57:17,018 539 | return modf@c@(x, iptr); 2023-09-16T10:57:17,019 | ^~~~ 2023-09-16T10:57:17,020 | | 2023-09-16T10:57:17,021 | npy_longdouble * {aka double *} 2023-09-16T10:57:17,023 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:57:17,024 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:57:17,026 from numpy/core/src/umath/matmul.c.src:7: 2023-09-16T10:57:17,027 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:57:17,028 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:57:17,030 | ^ 2023-09-16T10:57:19,836 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/numpy/core/src/umath/clip.c 2023-09-16T10:57:20,241 In file included from numpy/core/include/numpy/npy_math.h:585, 2023-09-16T10:57:20,242 from numpy/core/include/numpy/halffloat.h:5, 2023-09-16T10:57:20,243 from numpy/core/src/umath/clip.c.src:10: 2023-09-16T10:57:20,244 numpy/core/src/npymath/npy_math_internal.h.src: In function ‘npy_modfl’: 2023-09-16T10:57:20,245 numpy/core/src/npymath/npy_math_internal.h.src:539:21: warning: passing argument 2 of ‘modfl’ from incompatible pointer type [-Wincompatible-pointer-types] 2023-09-16T10:57:20,246 539 | return modf@c@(x, iptr); 2023-09-16T10:57:20,247 | ^~~~ 2023-09-16T10:57:20,248 | | 2023-09-16T10:57:20,249 | npy_longdouble * {aka double *} 2023-09-16T10:57:20,250 In file included from /usr/include/python3.11/pyport.h:218, 2023-09-16T10:57:20,251 from /usr/include/python3.11/Python.h:38, 2023-09-16T10:57:20,252 from numpy/core/src/umath/clip.c.src:8: 2023-09-16T10:57:20,253 /usr/include/arm-linux-gnueabihf/bits/mathcalls.h:110:1: note: expected ‘long double *’ but argument is of type ‘npy_longdouble *’ {aka ‘double *’} 2023-09-16T10:57:20,254 110 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) __nonnull ((2)); 2023-09-16T10:57:20,255 | ^ 2023-09-16T10:57:21,815 error: Command "arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -DHAVE_CBLAS -DNO_ATLAS_INFO=-1 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/umath -Inumpy/core/include -Ibuild/src.linux-armv7l-3.11/numpy/core/include/numpy -Ibuild/src.linux-armv7l-3.11/numpy/distutils/include -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/src/_simd -I/usr/include/python3.11 -Ibuild/src.linux-armv7l-3.11/numpy/core/src/common -Ibuild/src.linux-armv7l-3.11/numpy/core/src/npymath -c build/src.linux-armv7l-3.11/numpy/core/src/multiarray/arraytypes.c -o build/temp.linux-armv7l-3.11/build/src.linux-armv7l-3.11/numpy/core/src/multiarray/arraytypes.o -MMD -MF build/temp.linux-armv7l-3.11/build/src.linux-armv7l-3.11/numpy/core/src/multiarray/arraytypes.o.d" failed with exit status 1 2023-09-16T10:57:21,818 ########### EXT COMPILER OPTIMIZATION ########### 2023-09-16T10:57:21,820 Platform : 2023-09-16T10:57:21,821 Architecture: armhf 2023-09-16T10:57:21,822 Compiler : gcc 2023-09-16T10:57:21,824 CPU baseline : 2023-09-16T10:57:21,825 Requested : 'min' 2023-09-16T10:57:21,826 Enabled : none 2023-09-16T10:57:21,828 Flags : none 2023-09-16T10:57:21,829 Extra checks: none 2023-09-16T10:57:21,831 CPU dispatch : 2023-09-16T10:57:21,832 Requested : 'max -xop -fma4' 2023-09-16T10:57:21,833 Enabled : NEON NEON_FP16 NEON_VFPV4 ASIMD ASIMDHP ASIMDDP 2023-09-16T10:57:21,834 Generated : 2023-09-16T10:57:21,835 : 2023-09-16T10:57:21,836 NEON : 2023-09-16T10:57:21,837 Flags : -mfpu=neon 2023-09-16T10:57:21,838 Extra checks: none 2023-09-16T10:57:21,839 Detect : NEON 2023-09-16T10:57:21,840 : build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_unary_fp.dispatch.c 2023-09-16T10:57:21,841 : build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_arithmetic.dispatch.c 2023-09-16T10:57:21,842 : 2023-09-16T10:57:21,843 NEON_VFPV4 : NEON NEON_FP16 2023-09-16T10:57:21,844 Flags : -mfp16-format=ieee -mfpu=neon-vfpv4 2023-09-16T10:57:21,845 Extra checks: none 2023-09-16T10:57:21,846 Detect : NEON NEON_FP16 NEON_VFPV4 2023-09-16T10:57:21,848 : build/src.linux-armv7l-3.11/numpy/core/src/umath/loops_trigonometric.dispatch.c 2023-09-16T10:57:21,849 CCompilerOpt.cache_flush[804] : write cache to path -> /tmp/pip-install-la1zlv6k/numpy_c137cfc9558c42adb2c0ef295e347bdd/build/temp.linux-armv7l-3.11/ccompiler_opt_cache_ext.py 2023-09-16T10:57:21,852 ########### CLIB COMPILER OPTIMIZATION ########### 2023-09-16T10:57:21,854 Platform : 2023-09-16T10:57:21,855 Architecture: armhf 2023-09-16T10:57:21,857 Compiler : gcc 2023-09-16T10:57:21,859 CPU baseline : 2023-09-16T10:57:21,861 Requested : 'min' 2023-09-16T10:57:21,862 Enabled : none 2023-09-16T10:57:21,863 Flags : none 2023-09-16T10:57:21,865 Extra checks: none 2023-09-16T10:57:21,868 CPU dispatch : 2023-09-16T10:57:21,869 Requested : 'max -xop -fma4' 2023-09-16T10:57:21,870 Enabled : NEON NEON_FP16 NEON_VFPV4 ASIMD ASIMDHP ASIMDDP 2023-09-16T10:57:21,872 Generated : none 2023-09-16T10:57:21,873 CCompilerOpt.cache_flush[804] : write cache to path -> /tmp/pip-install-la1zlv6k/numpy_c137cfc9558c42adb2c0ef295e347bdd/build/temp.linux-armv7l-3.11/ccompiler_opt_cache_clib.py 2023-09-16T10:57:22,002 error: subprocess-exited-with-error 2023-09-16T10:57:22,003 × Building wheel for numpy (pyproject.toml) did not run successfully. 2023-09-16T10:57:22,004 │ exit code: 1 2023-09-16T10:57:22,004 ╰─> See above for output. 2023-09-16T10:57:22,006 note: This error originates from a subprocess, and is likely not a problem with pip. 2023-09-16T10:57:22,006 full command: /usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpp24jmy4_ 2023-09-16T10:57:22,007 cwd: /tmp/pip-install-la1zlv6k/numpy_c137cfc9558c42adb2c0ef295e347bdd 2023-09-16T10:57:22,008 Building wheel for numpy (pyproject.toml): finished with status 'error' 2023-09-16T10:57:22,009 ERROR: Failed building wheel for numpy 2023-09-16T10:57:22,011 Successfully built biotite 2023-09-16T10:57:22,012 Failed to build numpy 2023-09-16T10:57:22,013 ERROR: Could not build wheels for numpy, which is required to install pyproject.toml-based projects 2023-09-16T10:57:24,583 ERROR: [present-rich] pip subprocess to install build dependencies exited with 1 2023-09-16T10:57:24,597 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/__pip-runner__.py install --ignore-installed --no-user --prefix /tmp/pip-build-env-_csyds0t/overlay --no-warn-script-location -v --no-binary hydride --only-binary :none: -i https://pypi.org/simple --extra-index-url https://www.piwheels.org/simple --prefer-binary -- 'setuptools >= 0.30' 'wheel >= 0.30' 'biotite >= 0.28' 'numpy >= 1.14, <= 1.21' 'msgpack >= 0.5.6' 'cython >= 0.29'[/] 2023-09-16T10:57:24,597 [bold magenta]cwd[/]: \[inherit] 2023-09-16T10:57:24,598 Installing build dependencies: finished with status 'error' 2023-09-16T10:57:24,599 ERROR: [present-rich] pip subprocess to install build dependencies exited with 1 2023-09-16T10:57:24,604 Exception information: 2023-09-16T10:57:24,604 Traceback (most recent call last): 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-16T10:57:24,604 status = run_func(*args) 2023-09-16T10:57:24,604 ^^^^^^^^^^^^^^^ 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-16T10:57:24,604 return func(self, options, args) 2023-09-16T10:57:24,604 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2023-09-16T10:57:24,604 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-09-16T10:57:24,604 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2023-09-16T10:57:24,604 result = self._result = resolver.resolve( 2023-09-16T10:57:24,604 ^^^^^^^^^^^^^^^^^ 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2023-09-16T10:57:24,604 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-09-16T10:57:24,604 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2023-09-16T10:57:24,604 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2023-09-16T10:57:24,604 if not criterion.candidates: 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2023-09-16T10:57:24,604 return bool(self._sequence) 2023-09-16T10:57:24,604 ^^^^^^^^^^^^^^^^^^^^ 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-09-16T10:57:24,604 return any(self) 2023-09-16T10:57:24,604 ^^^^^^^^^ 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-09-16T10:57:24,604 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-09-16T10:57:24,604 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-09-16T10:57:24,604 candidate = func() 2023-09-16T10:57:24,604 ^^^^^^ 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2023-09-16T10:57:24,604 self._link_candidate_cache[link] = LinkCandidate( 2023-09-16T10:57:24,604 ^^^^^^^^^^^^^^ 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__ 2023-09-16T10:57:24,604 super().__init__( 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__ 2023-09-16T10:57:24,604 self.dist = self._prepare() 2023-09-16T10:57:24,604 ^^^^^^^^^^^^^^^ 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare 2023-09-16T10:57:24,604 dist = self._prepare_distribution() 2023-09-16T10:57:24,604 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution 2023-09-16T10:57:24,604 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-09-16T10:57:24,604 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement 2023-09-16T10:57:24,604 return self._prepare_linked_requirement(req, parallel_builds) 2023-09-16T10:57:24,604 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement 2023-09-16T10:57:24,604 dist = _get_prepared_distribution( 2023-09-16T10:57:24,604 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2023-09-16T10:57:24,604 abstract_dist.prepare_distribution_metadata( 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 38, in prepare_distribution_metadata 2023-09-16T10:57:24,604 self._prepare_build_backend(finder) 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 70, in _prepare_build_backend 2023-09-16T10:57:24,604 self.req.build_env.install_requirements( 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/build_env.py", line 217, in install_requirements 2023-09-16T10:57:24,604 self._install_requirements( 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/build_env.py", line 275, in _install_requirements 2023-09-16T10:57:24,604 call_subprocess( 2023-09-16T10:57:24,604 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-09-16T10:57:24,604 raise error 2023-09-16T10:57:24,604 pip._internal.exceptions.InstallationSubprocessError: pip subprocess to install build dependencies exited with 1 2023-09-16T10:57:24,621 Removed hydride==1.1.0 from https://files.pythonhosted.org/packages/2d/1d/70b2507223bd0d8986068236beb1ad0178e405c51de8718499e4e671cb15/hydride-1.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-tfiac24v' 2023-09-16T10:57:24,622 Removed build tracker: '/tmp/pip-build-tracker-tfiac24v'