2023-09-17T04:46:14,466 Created temporary directory: /tmp/pip-build-tracker-nyqjcwah
2023-09-17T04:46:14,467 Initialized build tracking at /tmp/pip-build-tracker-nyqjcwah
2023-09-17T04:46:14,468 Created build tracker: /tmp/pip-build-tracker-nyqjcwah
2023-09-17T04:46:14,468 Entered build tracker: /tmp/pip-build-tracker-nyqjcwah
2023-09-17T04:46:14,469 Created temporary directory: /tmp/pip-wheel-4pchzdsb
2023-09-17T04:46:14,472 Created temporary directory: /tmp/pip-ephem-wheel-cache-x7pkhuqn
2023-09-17T04:46:14,493 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-17T04:46:14,497 2 location(s) to search for versions of pmx-satumut:
2023-09-17T04:46:14,497 * https://pypi.org/simple/pmx-satumut/
2023-09-17T04:46:14,497 * https://www.piwheels.org/simple/pmx-satumut/
2023-09-17T04:46:14,498 Fetching project page and analyzing links: https://pypi.org/simple/pmx-satumut/
2023-09-17T04:46:14,499 Getting page https://pypi.org/simple/pmx-satumut/
2023-09-17T04:46:14,500 Found index url https://pypi.org/simple/
2023-09-17T04:46:14,641 Fetched page https://pypi.org/simple/pmx-satumut/ as application/vnd.pypi.simple.v1+json
2023-09-17T04:46:14,643   Link requires a different Python (3.11.2 not in: '>=2.7, <3'): https://files.pythonhosted.org/packages/9d/f3/d060deac232c6274f255fa1a7bddacc4048cba2d7fb004613fc1dde1123a/pmx-satumut-2.0.2.tar.gz (from https://pypi.org/simple/pmx-satumut/) (requires-python:>=2.7, <3)
2023-09-17T04:46:14,644   Skipping link: 2.0.2 Requires-Python >=2.7, <3: https://files.pythonhosted.org/packages/9d/f3/d060deac232c6274f255fa1a7bddacc4048cba2d7fb004613fc1dde1123a/pmx-satumut-2.0.2.tar.gz (from https://pypi.org/simple/pmx-satumut/) (requires-python:>=2.7, <3)
2023-09-17T04:46:14,644   Found link https://files.pythonhosted.org/packages/ef/7a/46b2633db0c9cece852152edf13ce0941be555137bfe133c8c38ddeb6f3d/pmx-satumut-2.0.3.tar.gz (from https://pypi.org/simple/pmx-satumut/), version: 2.0.3
2023-09-17T04:46:14,645   Found link https://files.pythonhosted.org/packages/72/c5/b3f3a7ea73cde31878d5a8b39755f723fceacfe3d671ad77b69b79d60b0f/pmx-satumut-2.0.4.tar.gz (from https://pypi.org/simple/pmx-satumut/) (requires-python:>=3.6), version: 2.0.4
2023-09-17T04:46:14,646 Fetching project page and analyzing links: https://www.piwheels.org/simple/pmx-satumut/
2023-09-17T04:46:14,647 Getting page https://www.piwheels.org/simple/pmx-satumut/
2023-09-17T04:46:14,648 Found index url https://www.piwheels.org/simple/
2023-09-17T04:46:14,906 Fetched page https://www.piwheels.org/simple/pmx-satumut/ as text/html
2023-09-17T04:46:14,910   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.4-cp39-cp39-linux_armv7l.whl#sha256=ef37fa7de18c4f8ad6201313b598e27f67c03c967c9e59a444645f5897fe7fd2 (from https://www.piwheels.org/simple/pmx-satumut/) (requires-python:>=3.6)
2023-09-17T04:46:14,910   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.4-cp39-cp39-linux_armv6l.whl#sha256=ef37fa7de18c4f8ad6201313b598e27f67c03c967c9e59a444645f5897fe7fd2 (from https://www.piwheels.org/simple/pmx-satumut/) (requires-python:>=3.6)
2023-09-17T04:46:14,911   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.4-cp37-cp37m-linux_armv7l.whl#sha256=9ad74a1e462b31238fc03094df0f7d66831bfc0e11319138079c16bfa7ab8792 (from https://www.piwheels.org/simple/pmx-satumut/) (requires-python:>=3.6)
2023-09-17T04:46:14,912   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.4-cp37-cp37m-linux_armv6l.whl#sha256=9ad74a1e462b31238fc03094df0f7d66831bfc0e11319138079c16bfa7ab8792 (from https://www.piwheels.org/simple/pmx-satumut/) (requires-python:>=3.6)
2023-09-17T04:46:14,912   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp39-cp39-linux_armv7l.whl#sha256=c88c5fcb51d11c22f11e1b7655a6de1399c175ec56a707b2043b953e583b8195 (from https://www.piwheels.org/simple/pmx-satumut/)
2023-09-17T04:46:14,913   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp39-cp39-linux_armv6l.whl#sha256=c88c5fcb51d11c22f11e1b7655a6de1399c175ec56a707b2043b953e583b8195 (from https://www.piwheels.org/simple/pmx-satumut/)
2023-09-17T04:46:14,914   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp37-cp37m-linux_armv7l.whl#sha256=8924f68e4e17468581042f6ed9ced75532b38316f5f49099911c43e5b3487f18 (from https://www.piwheels.org/simple/pmx-satumut/)
2023-09-17T04:46:14,914   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp37-cp37m-linux_armv6l.whl#sha256=8924f68e4e17468581042f6ed9ced75532b38316f5f49099911c43e5b3487f18 (from https://www.piwheels.org/simple/pmx-satumut/)
2023-09-17T04:46:14,915   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp35-cp35m-linux_armv7l.whl#sha256=48f313e84e29ab2d93241ac2c77777e82287084ee7f4c03b98ba90412abaa8a0 (from https://www.piwheels.org/simple/pmx-satumut/)
2023-09-17T04:46:14,915   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp35-cp35m-linux_armv6l.whl#sha256=48f313e84e29ab2d93241ac2c77777e82287084ee7f4c03b98ba90412abaa8a0 (from https://www.piwheels.org/simple/pmx-satumut/)
2023-09-17T04:46:14,916 Skipping link: not a file: https://www.piwheels.org/simple/pmx-satumut/
2023-09-17T04:46:14,916 Skipping link: not a file: https://pypi.org/simple/pmx-satumut/
2023-09-17T04:46:14,935 Given no hashes to check 1 links for project 'pmx-satumut': discarding no candidates
2023-09-17T04:46:14,953 Collecting pmx-satumut==2.0.4
2023-09-17T04:46:14,955   Created temporary directory: /tmp/pip-unpack-ook0fwdk
2023-09-17T04:46:15,172   Downloading pmx-satumut-2.0.4.tar.gz (5.3 MB)
2023-09-17T04:46:18,821   Added pmx-satumut==2.0.4 from https://files.pythonhosted.org/packages/72/c5/b3f3a7ea73cde31878d5a8b39755f723fceacfe3d671ad77b69b79d60b0f/pmx-satumut-2.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-nyqjcwah'
2023-09-17T04:46:18,822   Running setup.py (path:/tmp/pip-wheel-4pchzdsb/pmx-satumut_7887352401174b44ae57e282708c64e0/setup.py) egg_info for package pmx-satumut
2023-09-17T04:46:18,823   Created temporary directory: /tmp/pip-pip-egg-info-h9hmt1ae
2023-09-17T04:46:18,824   Preparing metadata (setup.py): started
2023-09-17T04:46:18,825   Running command python setup.py egg_info
2023-09-17T04:46:19,350   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:508: InformationOnly: Normalizing 'v2.0.4' to '2.0.4'
2023-09-17T04:46:19,351     self.metadata.version = self._normalize_version(
2023-09-17T04:46:19,393   running egg_info
2023-09-17T04:46:19,394   creating /tmp/pip-pip-egg-info-h9hmt1ae/pmx_satumut.egg-info
2023-09-17T04:46:19,411   writing /tmp/pip-pip-egg-info-h9hmt1ae/pmx_satumut.egg-info/PKG-INFO
2023-09-17T04:46:19,414   writing dependency_links to /tmp/pip-pip-egg-info-h9hmt1ae/pmx_satumut.egg-info/dependency_links.txt
2023-09-17T04:46:19,415   writing entry points to /tmp/pip-pip-egg-info-h9hmt1ae/pmx_satumut.egg-info/entry_points.txt
2023-09-17T04:46:19,416   writing requirements to /tmp/pip-pip-egg-info-h9hmt1ae/pmx_satumut.egg-info/requires.txt
2023-09-17T04:46:19,417   writing top-level names to /tmp/pip-pip-egg-info-h9hmt1ae/pmx_satumut.egg-info/top_level.txt
2023-09-17T04:46:19,419   writing manifest file '/tmp/pip-pip-egg-info-h9hmt1ae/pmx_satumut.egg-info/SOURCES.txt'
2023-09-17T04:46:19,485   reading manifest file '/tmp/pip-pip-egg-info-h9hmt1ae/pmx_satumut.egg-info/SOURCES.txt'
2023-09-17T04:46:19,487   reading manifest template 'MANIFEST.in'
2023-09-17T04:46:19,507   adding license file 'LICENSE'
2023-09-17T04:46:19,517   writing manifest file '/tmp/pip-pip-egg-info-h9hmt1ae/pmx_satumut.egg-info/SOURCES.txt'
2023-09-17T04:46:19,592   Preparing metadata (setup.py): finished with status 'done'
2023-09-17T04:46:19,596   Source in /tmp/pip-wheel-4pchzdsb/pmx-satumut_7887352401174b44ae57e282708c64e0 has version 2.0.4, which satisfies requirement pmx-satumut==2.0.4 from https://files.pythonhosted.org/packages/72/c5/b3f3a7ea73cde31878d5a8b39755f723fceacfe3d671ad77b69b79d60b0f/pmx-satumut-2.0.4.tar.gz
2023-09-17T04:46:19,597   Removed pmx-satumut==2.0.4 from https://files.pythonhosted.org/packages/72/c5/b3f3a7ea73cde31878d5a8b39755f723fceacfe3d671ad77b69b79d60b0f/pmx-satumut-2.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-nyqjcwah'
2023-09-17T04:46:19,603 Created temporary directory: /tmp/pip-unpack-9377cgty
2023-09-17T04:46:19,604 Created temporary directory: /tmp/pip-unpack-_r_43fp2
2023-09-17T04:46:19,610 Building wheels for collected packages: pmx-satumut
2023-09-17T04:46:19,615   Created temporary directory: /tmp/pip-wheel-7wtku2bn
2023-09-17T04:46:19,615   Building wheel for pmx-satumut (setup.py): started
2023-09-17T04:46:19,616   Destination directory: /tmp/pip-wheel-7wtku2bn
2023-09-17T04:46:19,617   Running command python setup.py bdist_wheel
2023-09-17T04:46:20,133   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:508: InformationOnly: Normalizing 'v2.0.4' to '2.0.4'
2023-09-17T04:46:20,133     self.metadata.version = self._normalize_version(
2023-09-17T04:46:20,400   running bdist_wheel
2023-09-17T04:46:20,480   running build
2023-09-17T04:46:20,480   running build_py
2023-09-17T04:46:20,486   creating build
2023-09-17T04:46:20,486   creating build/lib.linux-armv7l-cpython-311
2023-09-17T04:46:20,487   creating build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,488   copying src/pmx/ndx.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,491   copying src/pmx/geometry.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,493   copying src/pmx/__init__.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,495   copying src/pmx/atomselection.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,497   copying src/pmx/analysis.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,500   copying src/pmx/options.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,502   copying src/pmx/xtc.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,504   copying src/pmx/_version.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,505   copying src/pmx/alchemy.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,509   copying src/pmx/molecule.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,511   copying src/pmx/gmx.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,513   copying src/pmx/ffparser.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,516   copying src/pmx/utils.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,518   copying src/pmx/jobscript.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,520   copying src/pmx/model.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,524   copying src/pmx/parser.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,526   copying src/pmx/ligand_alchemy.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,530   copying src/pmx/chain.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,533   copying src/pmx/library.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,537   copying src/pmx/xdrfile.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,539   copying src/pmx/estimators.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,542   copying src/pmx/atom.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,544   copying src/pmx/builder.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,547   copying src/pmx/rotamer.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,549   copying src/pmx/forcefield.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,553   copying src/pmx/mutdb.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:20,555   running egg_info
2023-09-17T04:46:20,599   writing src/pmx_satumut.egg-info/PKG-INFO
2023-09-17T04:46:20,601   writing dependency_links to src/pmx_satumut.egg-info/dependency_links.txt
2023-09-17T04:46:20,603   writing entry points to src/pmx_satumut.egg-info/entry_points.txt
2023-09-17T04:46:20,604   writing requirements to src/pmx_satumut.egg-info/requires.txt
2023-09-17T04:46:20,605   writing top-level names to src/pmx_satumut.egg-info/top_level.txt
2023-09-17T04:46:20,627   reading manifest file 'src/pmx_satumut.egg-info/SOURCES.txt'
2023-09-17T04:46:20,635   reading manifest template 'MANIFEST.in'
2023-09-17T04:46:20,650   adding license file 'LICENSE'
2023-09-17T04:46:20,664   writing manifest file 'src/pmx_satumut.egg-info/SOURCES.txt'
2023-09-17T04:46:20,667   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.data' is absent from the `packages` configuration.
2023-09-17T04:46:20,667   !!

2023-09-17T04:46:20,668           ********************************************************************************
2023-09-17T04:46:20,669           ############################
2023-09-17T04:46:20,669           # Package would be ignored #
2023-09-17T04:46:20,670           ############################
2023-09-17T04:46:20,670           Python recognizes 'pmx.data' as an importable package[^1],
2023-09-17T04:46:20,670           but it is absent from setuptools' `packages` configuration.

2023-09-17T04:46:20,671           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-17T04:46:20,672           package, please make sure that 'pmx.data' is explicitly added
2023-09-17T04:46:20,672           to the `packages` configuration field.

2023-09-17T04:46:20,673           Alternatively, you can also rely on setuptools' discovery methods
2023-09-17T04:46:20,674           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-17T04:46:20,674           instead of `find_packages(...)`/`find:`).

2023-09-17T04:46:20,675           You can read more about "package discovery" on setuptools documentation page:

2023-09-17T04:46:20,676           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-17T04:46:20,677           If you don't want 'pmx.data' to be distributed and are
2023-09-17T04:46:20,677           already explicitly excluding 'pmx.data' via
2023-09-17T04:46:20,678           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-17T04:46:20,678           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-17T04:46:20,679           combination with a more fine grained `package-data` configuration.

2023-09-17T04:46:20,680           You can read more about "package data files" on setuptools documentation page:

2023-09-17T04:46:20,681           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-17T04:46:20,682           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-17T04:46:20,683                 even if it does not contain any `.py` files.
2023-09-17T04:46:20,683                 On the other hand, currently there is no concept of package data
2023-09-17T04:46:20,684                 directory, all directories are treated like packages.
2023-09-17T04:46:20,684           ********************************************************************************

2023-09-17T04:46:20,686   !!
2023-09-17T04:46:20,686     check.warn(importable)
2023-09-17T04:46:20,687   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.data.mutff' is absent from the `packages` configuration.
2023-09-17T04:46:20,687   !!

2023-09-17T04:46:20,688           ********************************************************************************
2023-09-17T04:46:20,689           ############################
2023-09-17T04:46:20,690           # Package would be ignored #
2023-09-17T04:46:20,690           ############################
2023-09-17T04:46:20,691           Python recognizes 'pmx.data.mutff' as an importable package[^1],
2023-09-17T04:46:20,691           but it is absent from setuptools' `packages` configuration.

2023-09-17T04:46:20,692           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-17T04:46:20,693           package, please make sure that 'pmx.data.mutff' is explicitly added
2023-09-17T04:46:20,693           to the `packages` configuration field.

2023-09-17T04:46:20,694           Alternatively, you can also rely on setuptools' discovery methods
2023-09-17T04:46:20,694           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-17T04:46:20,694           instead of `find_packages(...)`/`find:`).

2023-09-17T04:46:20,695           You can read more about "package discovery" on setuptools documentation page:

2023-09-17T04:46:20,696           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-17T04:46:20,697           If you don't want 'pmx.data.mutff' to be distributed and are
2023-09-17T04:46:20,697           already explicitly excluding 'pmx.data.mutff' via
2023-09-17T04:46:20,698           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-17T04:46:20,698           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-17T04:46:20,698           combination with a more fine grained `package-data` configuration.

2023-09-17T04:46:20,699           You can read more about "package data files" on setuptools documentation page:

2023-09-17T04:46:20,700           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-17T04:46:20,701           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-17T04:46:20,702                 even if it does not contain any `.py` files.
2023-09-17T04:46:20,702                 On the other hand, currently there is no concept of package data
2023-09-17T04:46:20,703                 directory, all directories are treated like packages.
2023-09-17T04:46:20,703           ********************************************************************************

2023-09-17T04:46:20,704   !!
2023-09-17T04:46:20,705     check.warn(importable)
2023-09-17T04:46:20,705   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.extensions.pmx' is absent from the `packages` configuration.
2023-09-17T04:46:20,706   !!

2023-09-17T04:46:20,709           ********************************************************************************
2023-09-17T04:46:20,709           ############################
2023-09-17T04:46:20,710           # Package would be ignored #
2023-09-17T04:46:20,711           ############################
2023-09-17T04:46:20,711           Python recognizes 'pmx.extensions.pmx' as an importable package[^1],
2023-09-17T04:46:20,712           but it is absent from setuptools' `packages` configuration.

2023-09-17T04:46:20,713           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-17T04:46:20,714           package, please make sure that 'pmx.extensions.pmx' is explicitly added
2023-09-17T04:46:20,714           to the `packages` configuration field.

2023-09-17T04:46:20,715           Alternatively, you can also rely on setuptools' discovery methods
2023-09-17T04:46:20,716           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-17T04:46:20,717           instead of `find_packages(...)`/`find:`).

2023-09-17T04:46:20,718           You can read more about "package discovery" on setuptools documentation page:

2023-09-17T04:46:20,719           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-17T04:46:20,720           If you don't want 'pmx.extensions.pmx' to be distributed and are
2023-09-17T04:46:20,721           already explicitly excluding 'pmx.extensions.pmx' via
2023-09-17T04:46:20,721           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-17T04:46:20,722           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-17T04:46:20,722           combination with a more fine grained `package-data` configuration.

2023-09-17T04:46:20,724           You can read more about "package data files" on setuptools documentation page:

2023-09-17T04:46:20,724           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-17T04:46:20,726           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-17T04:46:20,726                 even if it does not contain any `.py` files.
2023-09-17T04:46:20,727                 On the other hand, currently there is no concept of package data
2023-09-17T04:46:20,727                 directory, all directories are treated like packages.
2023-09-17T04:46:20,728           ********************************************************************************

2023-09-17T04:46:20,728   !!
2023-09-17T04:46:20,729     check.warn(importable)
2023-09-17T04:46:20,729   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.extensions.xdr' is absent from the `packages` configuration.
2023-09-17T04:46:20,730   !!

2023-09-17T04:46:20,731           ********************************************************************************
2023-09-17T04:46:20,731           ############################
2023-09-17T04:46:20,732           # Package would be ignored #
2023-09-17T04:46:20,732           ############################
2023-09-17T04:46:20,732           Python recognizes 'pmx.extensions.xdr' as an importable package[^1],
2023-09-17T04:46:20,733           but it is absent from setuptools' `packages` configuration.

2023-09-17T04:46:20,734           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-17T04:46:20,734           package, please make sure that 'pmx.extensions.xdr' is explicitly added
2023-09-17T04:46:20,735           to the `packages` configuration field.

2023-09-17T04:46:20,736           Alternatively, you can also rely on setuptools' discovery methods
2023-09-17T04:46:20,736           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-17T04:46:20,737           instead of `find_packages(...)`/`find:`).

2023-09-17T04:46:20,738           You can read more about "package discovery" on setuptools documentation page:

2023-09-17T04:46:20,739           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-17T04:46:20,740           If you don't want 'pmx.extensions.xdr' to be distributed and are
2023-09-17T04:46:20,741           already explicitly excluding 'pmx.extensions.xdr' via
2023-09-17T04:46:20,741           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-17T04:46:20,742           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-17T04:46:20,742           combination with a more fine grained `package-data` configuration.

2023-09-17T04:46:20,744           You can read more about "package data files" on setuptools documentation page:

2023-09-17T04:46:20,745           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-17T04:46:20,746           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-17T04:46:20,747                 even if it does not contain any `.py` files.
2023-09-17T04:46:20,748                 On the other hand, currently there is no concept of package data
2023-09-17T04:46:20,748                 directory, all directories are treated like packages.
2023-09-17T04:46:20,749           ********************************************************************************

2023-09-17T04:46:20,750   !!
2023-09-17T04:46:20,750     check.warn(importable)
2023-09-17T04:46:20,751   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.scripts' is absent from the `packages` configuration.
2023-09-17T04:46:20,752   !!

2023-09-17T04:46:20,753           ********************************************************************************
2023-09-17T04:46:20,753           ############################
2023-09-17T04:46:20,754           # Package would be ignored #
2023-09-17T04:46:20,755           ############################
2023-09-17T04:46:20,755           Python recognizes 'pmx.scripts' as an importable package[^1],
2023-09-17T04:46:20,755           but it is absent from setuptools' `packages` configuration.

2023-09-17T04:46:20,756           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-17T04:46:20,757           package, please make sure that 'pmx.scripts' is explicitly added
2023-09-17T04:46:20,757           to the `packages` configuration field.

2023-09-17T04:46:20,758           Alternatively, you can also rely on setuptools' discovery methods
2023-09-17T04:46:20,758           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-17T04:46:20,759           instead of `find_packages(...)`/`find:`).

2023-09-17T04:46:20,760           You can read more about "package discovery" on setuptools documentation page:

2023-09-17T04:46:20,760           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-17T04:46:20,761           If you don't want 'pmx.scripts' to be distributed and are
2023-09-17T04:46:20,762           already explicitly excluding 'pmx.scripts' via
2023-09-17T04:46:20,763           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-17T04:46:20,763           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-17T04:46:20,764           combination with a more fine grained `package-data` configuration.

2023-09-17T04:46:20,765           You can read more about "package data files" on setuptools documentation page:

2023-09-17T04:46:20,766           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-17T04:46:20,767           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-17T04:46:20,767                 even if it does not contain any `.py` files.
2023-09-17T04:46:20,768                 On the other hand, currently there is no concept of package data
2023-09-17T04:46:20,768                 directory, all directories are treated like packages.
2023-09-17T04:46:20,769           ********************************************************************************

2023-09-17T04:46:20,770   !!
2023-09-17T04:46:20,771     check.warn(importable)
2023-09-17T04:46:20,771   creating build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-17T04:46:20,772   copying src/pmx/data/aminoacids.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-17T04:46:20,772   copying src/pmx/data/bbdep.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-17T04:46:20,974   copying src/pmx/data/blosum62_new.mat -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-17T04:46:20,977   copying src/pmx/data/bp.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-17T04:46:20,981   copying src/pmx/data/bp_amber.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-17T04:46:20,986   copying src/pmx/data/bp_charmm.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-17T04:46:20,992   copying src/pmx/data/rna.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-17T04:46:20,995   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:20,996   copying src/pmx/data/mutff/atommass.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:20,999   copying src/pmx/data/mutff/elements.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:21,002   copying src/pmx/data/mutff/residuetypes.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:21,005   copying src/pmx/data/mutff/spc216.gro -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:21,008   copying src/pmx/data/mutff/specbond.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:21,010   copying src/pmx/data/mutff/vdwradii.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:21,013   copying src/pmx/data/mutff/xlateat.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:21,015   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,016   copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.am -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,019   copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.in -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,022   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,024   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,026   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,028   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,030   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,032   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,036   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,038   copying src/pmx/data/mutff/amber14sbmut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,041   copying src/pmx/data/mutff/amber14sbmut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,043   copying src/pmx/data/mutff/amber14sbmut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,045   copying src/pmx/data/mutff/amber14sbmut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,047   copying src/pmx/data/mutff/amber14sbmut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,050   copying src/pmx/data/mutff/amber14sbmut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,053   copying src/pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,056   copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,058   copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,060   copying src/pmx/data/mutff/amber14sbmut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,062   copying src/pmx/data/mutff/amber14sbmut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,065   copying src/pmx/data/mutff/amber14sbmut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,111   copying src/pmx/data/mutff/amber14sbmut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,134   copying src/pmx/data/mutff/amber14sbmut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,137   copying src/pmx/data/mutff/amber14sbmut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,139   copying src/pmx/data/mutff/amber14sbmut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,141   copying src/pmx/data/mutff/amber14sbmut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,144   copying src/pmx/data/mutff/amber14sbmut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,146   copying src/pmx/data/mutff/amber14sbmut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,148   copying src/pmx/data/mutff/amber14sbmut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,150   copying src/pmx/data/mutff/amber14sbmut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,152   copying src/pmx/data/mutff/amber14sbmut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,154   copying src/pmx/data/mutff/amber14sbmut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,156   copying src/pmx/data/mutff/amber14sbmut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,158   copying src/pmx/data/mutff/amber14sbmut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:21,160   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,161   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,164   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,166   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,168   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,171   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,173   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,175   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,180   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,183   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,185   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,189   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,220   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,224   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,227   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,230   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,233   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,236   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,238   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,242   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,244   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,246   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,248   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,250   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,252   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,312   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,341   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,355   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,372   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,378   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,382   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,385   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,388   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,390   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,393   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,396   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,398   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,400   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,403   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,405   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,408   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,410   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:21,412   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,414   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,416   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,418   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,421   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,424   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,426   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,430   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,433   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,436   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,439   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,467   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,470   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,472   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,475   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,477   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,480   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,483   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,486   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,488   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,491   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,493   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,496   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,498   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,558   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,587   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,598   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,604   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,607   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,611   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,614   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,616   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,618   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,622   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,624   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,627   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,629   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,632   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,634   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,637   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,639   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:21,642   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,643   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,646   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,649   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,652   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,653   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,655   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,660   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,663   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,665   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,668   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,670   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,673   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,676   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,680   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,683   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,685   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,688   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,690   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,693   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,747   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,776   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,778   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,781   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,783   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,786   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,788   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,790   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,793   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,795   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,797   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,799   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,801   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:21,803   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,804   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,806   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,809   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,812   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,814   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,816   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,820   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,824   copying src/pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,826   copying src/pmx/data/mutff/charmm22star-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,830   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,832   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,834   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,836   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,838   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,841   copying src/pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,845   copying src/pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,849   copying src/pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,852   copying src/pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,857   copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,860   copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,862   copying src/pmx/data/mutff/charmm22star-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,864   copying src/pmx/data/mutff/charmm22star-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,866   copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,868   copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,872   copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,874   copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,936   copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,955   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,956   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,959   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,961   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,963   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,964   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,967   copying src/pmx/data/mutff/charmm22star-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,969   copying src/pmx/data/mutff/charmm22star-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,971   copying src/pmx/data/mutff/charmm22star-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,973   copying src/pmx/data/mutff/charmm22star-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,975   copying src/pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,977   copying src/pmx/data/mutff/charmm22star-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,979   copying src/pmx/data/mutff/charmm22star-mut.ff/tips3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,982   copying src/pmx/data/mutff/charmm22star-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:21,984   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:21,985   copying src/pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:21,988   copying src/pmx/data/mutff/charmm36m-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:21,991   copying src/pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,018   copying src/pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,051   copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,053   copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,055   copying src/pmx/data/mutff/charmm36m-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,058   copying src/pmx/data/mutff/charmm36m-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,060   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,062   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,064   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,067   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,070   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,072   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,099   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,102   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,104   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,165   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,185   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,194   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,200   copying src/pmx/data/mutff/charmm36m-mut.ff/nbfix.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,202   copying src/pmx/data/mutff/charmm36m-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,205   copying src/pmx/data/mutff/charmm36m-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,207   copying src/pmx/data/mutff/charmm36m-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,210   copying src/pmx/data/mutff/charmm36m-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,212   copying src/pmx/data/mutff/charmm36m-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:22,214   creating build/lib.linux-armv7l-cpython-311/pmx/extensions
2023-09-17T04:46:22,215   creating build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-17T04:46:22,217   copying src/pmx/extensions/pmx/Energy.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-17T04:46:22,220   copying src/pmx/extensions/pmx/Geometry.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-17T04:46:22,223   copying src/pmx/extensions/pmx/Geometry.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-17T04:46:22,226   copying src/pmx/extensions/pmx/cpp_test.cpp -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-17T04:46:22,228   copying src/pmx/extensions/pmx/init.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-17T04:46:22,231   copying src/pmx/extensions/pmx/pmx.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-17T04:46:22,233   copying src/pmx/extensions/pmx/wrap_Geometry.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-17T04:46:22,236   creating build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-17T04:46:22,237   copying src/pmx/extensions/xdr/trr2xtc.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-17T04:46:22,240   copying src/pmx/extensions/xdr/xdrfile.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-17T04:46:22,243   copying src/pmx/extensions/xdr/xdrfile.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-17T04:46:22,247   copying src/pmx/extensions/xdr/xdrfile_c_test.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-17T04:46:22,249   copying src/pmx/extensions/xdr/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-17T04:46:22,252   copying src/pmx/extensions/xdr/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-17T04:46:22,254   copying src/pmx/extensions/xdr/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-17T04:46:22,257   copying src/pmx/extensions/xdr/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-17T04:46:22,259   creating build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:22,260   copying src/pmx/scripts/__init__.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:22,262   copying src/pmx/scripts/analyze_dhdl.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:22,266   copying src/pmx/scripts/atomMapping.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:22,269   copying src/pmx/scripts/build_cyclic_top.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:22,272   copying src/pmx/scripts/cli.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:22,274   copying src/pmx/scripts/generate_hybrid_residue.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:22,278   copying src/pmx/scripts/generate_hybrid_topology.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:22,281   copying src/pmx/scripts/ligandHybrid.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:22,284   copying src/pmx/scripts/make_double_box.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:22,286   copying src/pmx/scripts/md_setup.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:22,289   copying src/pmx/scripts/mutate.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:22,292   copying src/pmx/scripts/prepare_crooks_runs.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:22,295   copying src/pmx/scripts/set_gmxlib.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:22,297   copying src/pmx/scripts/setup_abfe.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:22,302   UPDATING build/lib.linux-armv7l-cpython-311/pmx/_version.py
2023-09-17T04:46:22,304   set build/lib.linux-armv7l-cpython-311/pmx/_version.py to 'v2.0.4'
2023-09-17T04:46:22,304   running build_ext
2023-09-17T04:46:22,311   building 'pmx._pmx' extension
2023-09-17T04:46:22,312   creating build/temp.linux-armv7l-cpython-311
2023-09-17T04:46:22,313   creating build/temp.linux-armv7l-cpython-311/src
2023-09-17T04:46:22,314   creating build/temp.linux-armv7l-cpython-311/src/pmx
2023-09-17T04:46:22,315   creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions
2023-09-17T04:46:22,316   creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx
2023-09-17T04:46:22,318   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/Energy.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Energy.o
2023-09-17T04:46:23,441   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/Geometry.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Geometry.o
2023-09-17T04:46:23,836   src/pmx/extensions/pmx/Geometry.c: In function ‘spread_atoms_on_grid’:
2023-09-17T04:46:23,836   src/pmx/extensions/pmx/Geometry.c:527:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable]
2023-09-17T04:46:23,837     527 |   int nx, ny, nz;
2023-09-17T04:46:23,837         |               ^~
2023-09-17T04:46:23,838   src/pmx/extensions/pmx/Geometry.c: In function ‘search_neighbors’:
2023-09-17T04:46:23,839   src/pmx/extensions/pmx/Geometry.c:586:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable]
2023-09-17T04:46:23,840     586 |   int nx, ny, nz;
2023-09-17T04:46:23,840         |               ^~
2023-09-17T04:46:25,711   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/init.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/init.o
2023-09-17T04:46:26,099   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/wrap_Geometry.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/wrap_Geometry.o
2023-09-17T04:46:27,646   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Energy.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Geometry.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/init.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/wrap_Geometry.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/pmx/_pmx.cpython-311-arm-linux-gnueabihf.so
2023-09-17T04:46:27,767   building 'pmx._xdrio' extension
2023-09-17T04:46:27,767   creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr
2023-09-17T04:46:27,769   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.11 -c src/pmx/extensions/xdr/xdrfile.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile.o
2023-09-17T04:46:27,810   src/pmx/extensions/xdr/xdrfile.c:5:2: warning: "/*" within comment [-Wcomment]
2023-09-17T04:46:27,811       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-17T04:46:27,812         |
2023-09-17T04:46:27,899   In file included from src/pmx/extensions/xdr/xdrfile.c:60:
2023-09-17T04:46:27,900   src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-17T04:46:27,900       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-17T04:46:27,901         |
2023-09-17T04:46:27,908   src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofint’:
2023-09-17T04:46:27,908   src/pmx/extensions/xdr/xdrfile.c:499:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-17T04:46:27,909     499 |     while (size >= num && num_of_bits < 32)
2023-09-17T04:46:27,910         |                 ^~
2023-09-17T04:46:27,911   src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofints’:
2023-09-17T04:46:27,912   src/pmx/extensions/xdr/xdrfile.c:545:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:27,912     545 |     while (bytes[num_of_bytes] >= num)
2023-09-17T04:46:27,913         |                                ^~
2023-09-17T04:46:27,913   src/pmx/extensions/xdr/xdrfile.c: In function ‘encodeints’:
2023-09-17T04:46:27,914   src/pmx/extensions/xdr/xdrfile.c:654:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-17T04:46:27,914     654 |     if (num_of_bits >= num_of_bytes * 8)
2023-09-17T04:46:27,914         |                     ^~
2023-09-17T04:46:27,915   src/pmx/extensions/xdr/xdrfile.c:656:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-17T04:46:27,916     656 |                 for (i = 0; i < num_of_bytes; i++)
2023-09-17T04:46:27,916         |                               ^
2023-09-17T04:46:27,917   src/pmx/extensions/xdr/xdrfile.c:664:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-17T04:46:27,917     664 |                 for (i = 0; i < num_of_bytes-1; i++)
2023-09-17T04:46:27,917         |                               ^
2023-09-17T04:46:27,918   src/pmx/extensions/xdr/xdrfile.c: In function ‘decodebits’:
2023-09-17T04:46:27,918   src/pmx/extensions/xdr/xdrfile.c:704:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:27,919     704 |                 if (lastbits < num_of_bits)
2023-09-17T04:46:27,920         |                              ^
2023-09-17T04:46:27,920   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_float’:
2023-09-17T04:46:27,921   src/pmx/extensions/xdr/xdrfile.c:814:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:27,921     814 |         if(size3>xfp->buf1size)
2023-09-17T04:46:27,922         |                 ^
2023-09-17T04:46:27,923   src/pmx/extensions/xdr/xdrfile.c:866:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:27,923     866 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-17T04:46:27,924         |                          ^
2023-09-17T04:46:27,925   src/pmx/extensions/xdr/xdrfile.c:866:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-17T04:46:27,925     866 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-17T04:46:27,926         |                                            ^~~
2023-09-17T04:46:27,927   src/pmx/extensions/xdr/xdrfile.c:792:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-09-17T04:46:27,927     792 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-09-17T04:46:27,928         |                                ^~~~~~
2023-09-17T04:46:27,929   src/pmx/extensions/xdr/xdrfile.c:789:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-09-17T04:46:27,929     789 |         int smallidx, minidx, maxidx;
2023-09-17T04:46:27,930         |                       ^~~~~~
2023-09-17T04:46:27,930   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2023-09-17T04:46:27,931   src/pmx/extensions/xdr/xdrfile.c:1010:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:27,932    1010 |         if(size3>xfp->buf1size)
2023-09-17T04:46:27,932         |                 ^
2023-09-17T04:46:27,933   src/pmx/extensions/xdr/xdrfile.c:1133:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-17T04:46:27,934    1133 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-09-17T04:46:27,935         |                         ^
2023-09-17T04:46:27,935   src/pmx/extensions/xdr/xdrfile.c:1139:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:27,936    1139 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-17T04:46:27,936         |                          ^
2023-09-17T04:46:27,937   src/pmx/extensions/xdr/xdrfile.c:1139:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-17T04:46:27,937    1139 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-17T04:46:27,938         |                                            ^~~
2023-09-17T04:46:27,940   src/pmx/extensions/xdr/xdrfile.c:1271:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-17T04:46:27,940    1271 |         if(tmp==(unsigned int)buf2[0])
2023-09-17T04:46:27,941         |               ^~
2023-09-17T04:46:27,941   src/pmx/extensions/xdr/xdrfile.c:999:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-09-17T04:46:27,942     999 |         int errval=1;
2023-09-17T04:46:27,942         |             ^~~~~~
2023-09-17T04:46:27,943   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_double’:
2023-09-17T04:46:27,943   src/pmx/extensions/xdr/xdrfile.c:1311:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:27,944    1311 |         if(size3>xfp->buf1size)
2023-09-17T04:46:27,945         |                 ^
2023-09-17T04:46:27,946   src/pmx/extensions/xdr/xdrfile.c:1366:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:27,947    1366 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-17T04:46:27,948         |                          ^
2023-09-17T04:46:27,948   src/pmx/extensions/xdr/xdrfile.c:1366:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-17T04:46:27,949    1366 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-17T04:46:27,950         |                                            ^~~
2023-09-17T04:46:27,952   src/pmx/extensions/xdr/xdrfile.c:1288:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-09-17T04:46:27,953    1288 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-09-17T04:46:27,953         |                                ^~~~~~
2023-09-17T04:46:27,954   src/pmx/extensions/xdr/xdrfile.c:1285:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-09-17T04:46:27,955    1285 |         int smallidx, minidx, maxidx;
2023-09-17T04:46:27,955         |                       ^~~~~~
2023-09-17T04:46:27,956   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2023-09-17T04:46:27,956   src/pmx/extensions/xdr/xdrfile.c:1502:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:27,957    1502 |         if(size3>xfp->buf1size) {
2023-09-17T04:46:27,957         |                 ^
2023-09-17T04:46:27,964   src/pmx/extensions/xdr/xdrfile.c:1617:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-17T04:46:27,964    1617 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-09-17T04:46:27,965         |                         ^
2023-09-17T04:46:27,966   src/pmx/extensions/xdr/xdrfile.c:1622:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:27,967    1622 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-17T04:46:27,968         |                          ^
2023-09-17T04:46:27,968   src/pmx/extensions/xdr/xdrfile.c:1622:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-17T04:46:27,969    1622 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-17T04:46:27,969         |                                            ^~~
2023-09-17T04:46:27,972   src/pmx/extensions/xdr/xdrfile.c:1732:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-17T04:46:27,972    1732 |         if(tmp==(unsigned int)buf2[0])
2023-09-17T04:46:27,973         |               ^~
2023-09-17T04:46:27,973   src/pmx/extensions/xdr/xdrfile.c:1492:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-09-17T04:46:27,974    1492 |         int errval=1;
2023-09-17T04:46:27,974         |             ^~~~~~
2023-09-17T04:46:30,567   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.11 -c src/pmx/extensions/xdr/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_trr.o
2023-09-17T04:46:30,608   src/pmx/extensions/xdr/xdrfile_trr.c:5:2: warning: "/*" within comment [-Wcomment]
2023-09-17T04:46:30,609       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-17T04:46:30,610         |
2023-09-17T04:46:30,650   In file included from src/pmx/extensions/xdr/xdrfile_trr.c:41:
2023-09-17T04:46:30,651   src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-17T04:46:30,652       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-17T04:46:30,652         |
2023-09-17T04:46:30,653   In file included from src/pmx/extensions/xdr/xdrfile_trr.c:42:
2023-09-17T04:46:30,654   src/pmx/extensions/xdr/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-17T04:46:30,654       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-17T04:46:30,655         |
2023-09-17T04:46:30,656   src/pmx/extensions/xdr/xdrfile_trr.c: In function ‘do_trnheader’:
2023-09-17T04:46:30,656   src/pmx/extensions/xdr/xdrfile_trr.c:108:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-17T04:46:30,657     108 |         if (slen != strlen(version)+1)
2023-09-17T04:46:30,658         |                  ^~
2023-09-17T04:46:30,658   src/pmx/extensions/xdr/xdrfile_trr.c:118:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-17T04:46:30,659     118 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2023-09-17T04:46:30,659         |                                              ^~
2023-09-17T04:46:31,323   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.11 -c src/pmx/extensions/xdr/xdrfile_xtc.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_xtc.o
2023-09-17T04:46:31,396   In file included from src/pmx/extensions/xdr/xdrfile_xtc.c:31:
2023-09-17T04:46:31,397   src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-17T04:46:31,397       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-17T04:46:31,398         |
2023-09-17T04:46:31,398   In file included from src/pmx/extensions/xdr/xdrfile_xtc.c:32:
2023-09-17T04:46:31,399   src/pmx/extensions/xdr/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-17T04:46:31,400       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-17T04:46:31,400         |
2023-09-17T04:46:31,401   src/pmx/extensions/xdr/xdrfile_xtc.c: In function ‘xtc_coord’:
2023-09-17T04:46:31,402   src/pmx/extensions/xdr/xdrfile_xtc.c:66:15: warning: unused variable ‘j’ [-Wunused-variable]
2023-09-17T04:46:31,402      66 |         int i,j,result;
2023-09-17T04:46:31,403         |               ^
2023-09-17T04:46:31,403   src/pmx/extensions/xdr/xdrfile_xtc.c:66:13: warning: unused variable ‘i’ [-Wunused-variable]
2023-09-17T04:46:31,404      66 |         int i,j,result;
2023-09-17T04:46:31,405         |             ^
2023-09-17T04:46:31,518   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_trr.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_xtc.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so
2023-09-17T04:46:31,644   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-17T04:46:31,645   !!

2023-09-17T04:46:31,646           ********************************************************************************
2023-09-17T04:46:31,646           Please avoid running ``setup.py`` directly.
2023-09-17T04:46:31,646           Instead, use pypa/build, pypa/installer or other
2023-09-17T04:46:31,647           standards-based tools.

2023-09-17T04:46:31,648           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-17T04:46:31,648           ********************************************************************************

2023-09-17T04:46:31,649   !!
2023-09-17T04:46:31,650     self.initialize_options()
2023-09-17T04:46:31,668   installing to build/bdist.linux-armv7l/wheel
2023-09-17T04:46:31,668   running install
2023-09-17T04:46:31,693   running install_lib
2023-09-17T04:46:31,714   creating build/bdist.linux-armv7l
2023-09-17T04:46:31,715   creating build/bdist.linux-armv7l/wheel
2023-09-17T04:46:31,718   creating build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:31,720   copying build/lib.linux-armv7l-cpython-311/pmx/ndx.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:31,723   copying build/lib.linux-armv7l-cpython-311/pmx/_pmx.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:31,729   copying build/lib.linux-armv7l-cpython-311/pmx/geometry.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:31,731   copying build/lib.linux-armv7l-cpython-311/pmx/__init__.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:31,734   copying build/lib.linux-armv7l-cpython-311/pmx/atomselection.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:31,737   copying build/lib.linux-armv7l-cpython-311/pmx/analysis.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:31,740   copying build/lib.linux-armv7l-cpython-311/pmx/options.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:31,743   copying build/lib.linux-armv7l-cpython-311/pmx/xtc.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:31,745   copying build/lib.linux-armv7l-cpython-311/pmx/_version.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:31,747   copying build/lib.linux-armv7l-cpython-311/pmx/alchemy.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:31,752   creating build/bdist.linux-armv7l/wheel/pmx/data
2023-09-17T04:46:31,754   copying build/lib.linux-armv7l-cpython-311/pmx/data/bp.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-17T04:46:31,759   copying build/lib.linux-armv7l-cpython-311/pmx/data/rna.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-17T04:46:31,763   copying build/lib.linux-armv7l-cpython-311/pmx/data/aminoacids.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-17T04:46:31,769   copying build/lib.linux-armv7l-cpython-311/pmx/data/blosum62_new.mat -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-17T04:46:31,772   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:31,773   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/spc216.gro -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:31,775   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/atommass.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:31,778   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,779   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,781   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,785   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,786   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,793   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,795   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,816   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,818   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,822   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,824   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,826   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,849   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,851   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,878   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,880   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,882   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,884   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/nbfix.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,886   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,889   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,890   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,919   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,921   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,922   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,925   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,928   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,931   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-17T04:46:31,981   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:31,982   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:31,985   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:31,987   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:31,989   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/lipids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:31,992   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:31,995   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:31,997   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,000   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,003   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,005   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,007   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,009   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,011   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,015   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,018   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,020   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,022   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/lipids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,024   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,026   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,045   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,047   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,049   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,051   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,053   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,054   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,056   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,059   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,060   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,065   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,067   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,069   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,072   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,075   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,078   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,080   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,082   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tips3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,084   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,086   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,089   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,091   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,093   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-17T04:46:32,136   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,137   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,139   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,141   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,144   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,146   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,149   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,151   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,156   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,158   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,161   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,164   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,166   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,175   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,179   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,182   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,186   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,188   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,191   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,193   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,198   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,226   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,247   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,249   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,250   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,260   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,262   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,264   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,267   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,268   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,271   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,272   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,274   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,276   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,278   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,280   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,282   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,284   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,286   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,288   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,290   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,293   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:32,336   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/xlateat.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:32,337   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/elements.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:32,339   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/residuetypes.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:32,342   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,343   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,345   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,347   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,349   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,351   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,353   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,357   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,359   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,361   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,363   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,365   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,371   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,374   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,377   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,379   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,381   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,382   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,384   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,388   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,409   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,438   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,440   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,442   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,445   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,447   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,449   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,453   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,456   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,459   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,461   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,463   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,466   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,469   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,471   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,474   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,477   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,479   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,482   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,486   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,488   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-17T04:46:32,547   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,548   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,550   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,553   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,555   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,556   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,560   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,562   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,563   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,565   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,568   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,571   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,573   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,575   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,577   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,600   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,602   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,604   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,606   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,608   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,610   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,612   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,614   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,616   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,618   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,620   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,623   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,624   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,626   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,628   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,631   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,633   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,635   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:32,684   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/vdwradii.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:32,686   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/specbond.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:32,689   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,690   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,692   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,695   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,697   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,699   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,702   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,705   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,707   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,709   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,714   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,718   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,720   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,722   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,724   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,751   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,753   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,755   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,757   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,759   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/Makefile.in -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,762   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:32,764   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:33,084   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:34,167   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:34,347   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:34,351   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:34,355   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/Makefile.am -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:34,359   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:34,365   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:34,370   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:34,374   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:34,381   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:34,386   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:34,391   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:34,396   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-17T04:46:34,476   copying build/lib.linux-armv7l-cpython-311/pmx/data/bbdep.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-17T04:46:34,739   copying build/lib.linux-armv7l-cpython-311/pmx/data/bp_amber.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-17T04:46:34,744   copying build/lib.linux-armv7l-cpython-311/pmx/data/bp_charmm.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-17T04:46:34,748   copying build/lib.linux-armv7l-cpython-311/pmx/molecule.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:34,751   copying build/lib.linux-armv7l-cpython-311/pmx/gmx.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:34,753   copying build/lib.linux-armv7l-cpython-311/pmx/ffparser.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:34,756   copying build/lib.linux-armv7l-cpython-311/pmx/utils.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:34,758   copying build/lib.linux-armv7l-cpython-311/pmx/jobscript.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:34,761   copying build/lib.linux-armv7l-cpython-311/pmx/model.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:34,764   copying build/lib.linux-armv7l-cpython-311/pmx/parser.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:34,766   copying build/lib.linux-armv7l-cpython-311/pmx/ligand_alchemy.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:34,770   copying build/lib.linux-armv7l-cpython-311/pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:34,774   copying build/lib.linux-armv7l-cpython-311/pmx/chain.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:34,777   copying build/lib.linux-armv7l-cpython-311/pmx/library.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:34,781   copying build/lib.linux-armv7l-cpython-311/pmx/xdrfile.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:34,784   copying build/lib.linux-armv7l-cpython-311/pmx/estimators.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:34,787   creating build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:34,788   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/prepare_crooks_runs.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:34,790   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/setup_abfe.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:34,792   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/generate_hybrid_topology.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:34,794   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:34,796   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/cli.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:34,797   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/make_double_box.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:34,799   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/analyze_dhdl.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:34,802   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligandHybrid.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:34,804   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/atomMapping.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:34,807   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/set_gmxlib.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:34,808   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/generate_hybrid_residue.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:34,812   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/build_cyclic_top.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:34,814   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/md_setup.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:34,817   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/mutate.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:34,820   creating build/bdist.linux-armv7l/wheel/pmx/extensions
2023-09-17T04:46:34,821   creating build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-17T04:46:34,822   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/init.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-17T04:46:34,824   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/cpp_test.cpp -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-17T04:46:34,826   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Geometry.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-17T04:46:34,828   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Energy.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-17T04:46:34,831   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-17T04:46:34,833   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/wrap_Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-17T04:46:34,836   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/pmx.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-17T04:46:34,838   creating build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-17T04:46:34,839   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-17T04:46:34,841   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-17T04:46:34,844   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-17T04:46:34,847   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/trr2xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-17T04:46:34,849   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-17T04:46:34,851   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-17T04:46:34,852   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_c_test.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-17T04:46:34,854   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-17T04:46:34,857   copying build/lib.linux-armv7l-cpython-311/pmx/atom.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:34,859   copying build/lib.linux-armv7l-cpython-311/pmx/builder.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:34,862   copying build/lib.linux-armv7l-cpython-311/pmx/rotamer.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:34,864   copying build/lib.linux-armv7l-cpython-311/pmx/forcefield.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:34,868   copying build/lib.linux-armv7l-cpython-311/pmx/mutdb.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:34,870   running install_egg_info
2023-09-17T04:46:34,894   Copying src/pmx_satumut.egg-info to build/bdist.linux-armv7l/wheel/pmx_satumut-2.0.4-py3.11.egg-info
2023-09-17T04:46:34,907   running install_scripts
2023-09-17T04:46:34,958   creating build/bdist.linux-armv7l/wheel/pmx_satumut-2.0.4.dist-info/WHEEL
2023-09-17T04:46:34,961   creating '/tmp/pip-wheel-7wtku2bn/pmx_satumut-2.0.4-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-17T04:46:34,963   adding 'pmx/__init__.py'
2023-09-17T04:46:34,998   adding 'pmx/_pmx.cpython-311-arm-linux-gnueabihf.so'
2023-09-17T04:46:35,001   adding 'pmx/_version.py'
2023-09-17T04:46:35,022   adding 'pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so'
2023-09-17T04:46:35,030   adding 'pmx/alchemy.py'
2023-09-17T04:46:35,033   adding 'pmx/analysis.py'
2023-09-17T04:46:35,035   adding 'pmx/atom.py'
2023-09-17T04:46:35,038   adding 'pmx/atomselection.py'
2023-09-17T04:46:35,040   adding 'pmx/builder.py'
2023-09-17T04:46:35,044   adding 'pmx/chain.py'
2023-09-17T04:46:35,047   adding 'pmx/estimators.py'
2023-09-17T04:46:35,050   adding 'pmx/ffparser.py'
2023-09-17T04:46:35,059   adding 'pmx/forcefield.py'
2023-09-17T04:46:35,061   adding 'pmx/geometry.py'
2023-09-17T04:46:35,063   adding 'pmx/gmx.py'
2023-09-17T04:46:35,064   adding 'pmx/jobscript.py'
2023-09-17T04:46:35,073   adding 'pmx/library.py'
2023-09-17T04:46:35,085   adding 'pmx/ligand_alchemy.py'
2023-09-17T04:46:35,091   adding 'pmx/model.py'
2023-09-17T04:46:35,095   adding 'pmx/molecule.py'
2023-09-17T04:46:35,096   adding 'pmx/mutdb.py'
2023-09-17T04:46:35,098   adding 'pmx/ndx.py'
2023-09-17T04:46:35,101   adding 'pmx/options.py'
2023-09-17T04:46:35,102   adding 'pmx/parser.py'
2023-09-17T04:46:35,104   adding 'pmx/rotamer.py'
2023-09-17T04:46:35,107   adding 'pmx/utils.py'
2023-09-17T04:46:35,109   adding 'pmx/xdrfile.py'
2023-09-17T04:46:35,111   adding 'pmx/xtc.py'
2023-09-17T04:46:35,137   adding 'pmx/data/aminoacids.pkl'
2023-09-17T04:46:36,937   adding 'pmx/data/bbdep.pkl'
2023-09-17T04:46:37,077   adding 'pmx/data/blosum62_new.mat'
2023-09-17T04:46:37,092   adding 'pmx/data/bp.pkl'
2023-09-17T04:46:37,118   adding 'pmx/data/bp_amber.pkl'
2023-09-17T04:46:37,150   adding 'pmx/data/bp_charmm.pkl'
2023-09-17T04:46:37,327   adding 'pmx/data/rna.pkl'
2023-09-17T04:46:37,649   adding 'pmx/data/mutff/atommass.dat'
2023-09-17T04:46:37,906   adding 'pmx/data/mutff/elements.dat'
2023-09-17T04:46:38,164   adding 'pmx/data/mutff/residuetypes.dat'
2023-09-17T04:46:38,325   adding 'pmx/data/mutff/spc216.gro'
2023-09-17T04:46:38,430   adding 'pmx/data/mutff/specbond.dat'
2023-09-17T04:46:38,435   adding 'pmx/data/mutff/vdwradii.dat'
2023-09-17T04:46:38,438   adding 'pmx/data/mutff/xlateat.dat'
2023-09-17T04:46:38,441   adding 'pmx/data/mutff/amber14sbmut.ff/Makefile.am'
2023-09-17T04:46:38,445   adding 'pmx/data/mutff/amber14sbmut.ff/Makefile.in'
2023-09-17T04:46:38,449   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.arn'
2023-09-17T04:46:38,451   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb'
2023-09-17T04:46:38,455   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb'
2023-09-17T04:46:38,457   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb'
2023-09-17T04:46:38,459   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b'
2023-09-17T04:46:38,472   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp'
2023-09-17T04:46:38,476   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd'
2023-09-17T04:46:38,479   adding 'pmx/data/mutff/amber14sbmut.ff/atomtypes.atp'
2023-09-17T04:46:38,481   adding 'pmx/data/mutff/amber14sbmut.ff/dna.arn'
2023-09-17T04:46:38,483   adding 'pmx/data/mutff/amber14sbmut.ff/dna.hdb'
2023-09-17T04:46:38,484   adding 'pmx/data/mutff/amber14sbmut.ff/dna.r2b'
2023-09-17T04:46:38,490   adding 'pmx/data/mutff/amber14sbmut.ff/dna.rtp'
2023-09-17T04:46:38,503   adding 'pmx/data/mutff/amber14sbmut.ff/ffbonded.itp'
2023-09-17T04:46:38,507   adding 'pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp'
2023-09-17T04:46:38,509   adding 'pmx/data/mutff/amber14sbmut.ff/forcefield.doc'
2023-09-17T04:46:38,511   adding 'pmx/data/mutff/amber14sbmut.ff/forcefield.itp'
2023-09-17T04:46:38,513   adding 'pmx/data/mutff/amber14sbmut.ff/gbsa.itp'
2023-09-17T04:46:38,515   adding 'pmx/data/mutff/amber14sbmut.ff/ions.itp'
2023-09-17T04:46:38,714   adding 'pmx/data/mutff/amber14sbmut.ff/mutres.mtp'
2023-09-17T04:46:38,804   adding 'pmx/data/mutff/amber14sbmut.ff/mutres.rtp'
2023-09-17T04:46:38,816   adding 'pmx/data/mutff/amber14sbmut.ff/rna.arn'
2023-09-17T04:46:38,817   adding 'pmx/data/mutff/amber14sbmut.ff/rna.hdb'
2023-09-17T04:46:38,818   adding 'pmx/data/mutff/amber14sbmut.ff/rna.r2b'
2023-09-17T04:46:38,822   adding 'pmx/data/mutff/amber14sbmut.ff/rna.rtp'
2023-09-17T04:46:38,824   adding 'pmx/data/mutff/amber14sbmut.ff/spc.itp'
2023-09-17T04:46:38,826   adding 'pmx/data/mutff/amber14sbmut.ff/spce.itp'
2023-09-17T04:46:38,827   adding 'pmx/data/mutff/amber14sbmut.ff/tip3p.itp'
2023-09-17T04:46:38,828   adding 'pmx/data/mutff/amber14sbmut.ff/tip4p.itp'
2023-09-17T04:46:38,830   adding 'pmx/data/mutff/amber14sbmut.ff/tip4pew.itp'
2023-09-17T04:46:38,831   adding 'pmx/data/mutff/amber14sbmut.ff/tip5p.itp'
2023-09-17T04:46:38,833   adding 'pmx/data/mutff/amber14sbmut.ff/urea.itp'
2023-09-17T04:46:38,834   adding 'pmx/data/mutff/amber14sbmut.ff/watermodels.dat'
2023-09-17T04:46:38,838   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn'
2023-09-17T04:46:38,840   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup'
2023-09-17T04:46:38,841   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb'
2023-09-17T04:46:38,843   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb'
2023-09-17T04:46:38,845   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb'
2023-09-17T04:46:38,847   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b'
2023-09-17T04:46:38,855   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp'
2023-09-17T04:46:38,858   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd'
2023-09-17T04:46:38,860   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp'
2023-09-17T04:46:38,864   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp'
2023-09-17T04:46:38,926   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres'
2023-09-17T04:46:38,939   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp'
2023-09-17T04:46:38,941   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn'
2023-09-17T04:46:38,942   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb'
2023-09-17T04:46:38,944   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b'
2023-09-17T04:46:38,946   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp'
2023-09-17T04:46:38,948   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp'
2023-09-17T04:46:38,953   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp'
2023-09-17T04:46:38,955   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp'
2023-09-17T04:46:38,956   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc'
2023-09-17T04:46:38,958   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp'
2023-09-17T04:46:38,959   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp'
2023-09-17T04:46:38,960   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp'
2023-09-17T04:46:39,113   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp'
2023-09-17T04:46:39,196   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp'
2023-09-17T04:46:39,223   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp'
2023-09-17T04:46:39,233   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp'
2023-09-17T04:46:39,236   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp'
2023-09-17T04:46:39,238   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp'
2023-09-17T04:46:39,240   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn'
2023-09-17T04:46:39,241   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb'
2023-09-17T04:46:39,242   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b'
2023-09-17T04:46:39,244   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp'
2023-09-17T04:46:39,246   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp'
2023-09-17T04:46:39,247   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp'
2023-09-17T04:46:39,248   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp'
2023-09-17T04:46:39,250   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp'
2023-09-17T04:46:39,251   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp'
2023-09-17T04:46:39,252   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp'
2023-09-17T04:46:39,254   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp'
2023-09-17T04:46:39,255   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat'
2023-09-17T04:46:39,257   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn'
2023-09-17T04:46:39,258   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb'
2023-09-17T04:46:39,260   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb'
2023-09-17T04:46:39,261   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb'
2023-09-17T04:46:39,262   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b'
2023-09-17T04:46:39,271   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp'
2023-09-17T04:46:39,273   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd'
2023-09-17T04:46:39,274   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp'
2023-09-17T04:46:39,279   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp'
2023-09-17T04:46:39,340   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres'
2023-09-17T04:46:39,353   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp'
2023-09-17T04:46:39,354   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn'
2023-09-17T04:46:39,356   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb'
2023-09-17T04:46:39,357   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b'
2023-09-17T04:46:39,359   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp'
2023-09-17T04:46:39,361   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp'
2023-09-17T04:46:39,365   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp'
2023-09-17T04:46:39,367   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp'
2023-09-17T04:46:39,369   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc'
2023-09-17T04:46:39,370   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp'
2023-09-17T04:46:39,371   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp'
2023-09-17T04:46:39,373   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp'
2023-09-17T04:46:39,526   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp'
2023-09-17T04:46:39,608   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp'
2023-09-17T04:46:39,635   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp'
2023-09-17T04:46:39,647   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp'
2023-09-17T04:46:39,653   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp'
2023-09-17T04:46:39,659   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp'
2023-09-17T04:46:39,664   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn'
2023-09-17T04:46:39,669   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb'
2023-09-17T04:46:39,674   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b'
2023-09-17T04:46:39,680   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp'
2023-09-17T04:46:39,685   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp'
2023-09-17T04:46:39,692   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp'
2023-09-17T04:46:39,694   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp'
2023-09-17T04:46:39,696   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp'
2023-09-17T04:46:39,697   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp'
2023-09-17T04:46:39,699   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp'
2023-09-17T04:46:39,701   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp'
2023-09-17T04:46:39,703   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat'
2023-09-17T04:46:39,706   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn'
2023-09-17T04:46:39,707   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb'
2023-09-17T04:46:39,708   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb'
2023-09-17T04:46:39,710   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb'
2023-09-17T04:46:39,711   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b'
2023-09-17T04:46:39,720   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp'
2023-09-17T04:46:39,723   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd'
2023-09-17T04:46:39,724   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp'
2023-09-17T04:46:39,725   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn'
2023-09-17T04:46:39,727   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb'
2023-09-17T04:46:39,728   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b'
2023-09-17T04:46:39,731   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp'
2023-09-17T04:46:39,735   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp'
2023-09-17T04:46:39,737   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp'
2023-09-17T04:46:39,738   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc'
2023-09-17T04:46:39,740   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp'
2023-09-17T04:46:39,741   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp'
2023-09-17T04:46:39,743   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp'
2023-09-17T04:46:39,925   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp'
2023-09-17T04:46:40,022   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp'
2023-09-17T04:46:40,034   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn'
2023-09-17T04:46:40,036   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb'
2023-09-17T04:46:40,037   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b'
2023-09-17T04:46:40,039   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp'
2023-09-17T04:46:40,040   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp'
2023-09-17T04:46:40,041   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp'
2023-09-17T04:46:40,042   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp'
2023-09-17T04:46:40,044   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp'
2023-09-17T04:46:40,045   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp'
2023-09-17T04:46:40,046   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp'
2023-09-17T04:46:40,047   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp'
2023-09-17T04:46:40,048   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat'
2023-09-17T04:46:40,050   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn'
2023-09-17T04:46:40,052   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb'
2023-09-17T04:46:40,053   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb'
2023-09-17T04:46:40,054   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb'
2023-09-17T04:46:40,055   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b'
2023-09-17T04:46:40,059   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp'
2023-09-17T04:46:40,061   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd'
2023-09-17T04:46:40,063   adding 'pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp'
2023-09-17T04:46:40,067   adding 'pmx/data/mutff/charmm22star-mut.ff/cmap.itp'
2023-09-17T04:46:40,069   adding 'pmx/data/mutff/charmm22star-mut.ff/dna.arn'
2023-09-17T04:46:40,070   adding 'pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb'
2023-09-17T04:46:40,071   adding 'pmx/data/mutff/charmm22star-mut.ff/dna.hdb'
2023-09-17T04:46:40,072   adding 'pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb'
2023-09-17T04:46:40,074   adding 'pmx/data/mutff/charmm22star-mut.ff/dna.rtp'
2023-09-17T04:46:40,081   adding 'pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp'
2023-09-17T04:46:40,089   adding 'pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp'
2023-09-17T04:46:40,093   adding 'pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp'
2023-09-17T04:46:40,105   adding 'pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp'
2023-09-17T04:46:40,108   adding 'pmx/data/mutff/charmm22star-mut.ff/forcefield.doc'
2023-09-17T04:46:40,109   adding 'pmx/data/mutff/charmm22star-mut.ff/forcefield.itp'
2023-09-17T04:46:40,110   adding 'pmx/data/mutff/charmm22star-mut.ff/gb.itp'
2023-09-17T04:46:40,111   adding 'pmx/data/mutff/charmm22star-mut.ff/ions.itp'
2023-09-17T04:46:40,112   adding 'pmx/data/mutff/charmm22star-mut.ff/lipids.hdb'
2023-09-17T04:46:40,116   adding 'pmx/data/mutff/charmm22star-mut.ff/lipids.rtp'
2023-09-17T04:46:40,118   adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.arn'
2023-09-17T04:46:40,266   adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.mtp'
2023-09-17T04:46:40,346   adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.rtp'
2023-09-17T04:46:40,357   adding 'pmx/data/mutff/charmm22star-mut.ff/rna.arn'
2023-09-17T04:46:40,358   adding 'pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb'
2023-09-17T04:46:40,359   adding 'pmx/data/mutff/charmm22star-mut.ff/rna.hdb'
2023-09-17T04:46:40,360   adding 'pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb'
2023-09-17T04:46:40,361   adding 'pmx/data/mutff/charmm22star-mut.ff/rna.r2b'
2023-09-17T04:46:40,363   adding 'pmx/data/mutff/charmm22star-mut.ff/rna.rtp'
2023-09-17T04:46:40,364   adding 'pmx/data/mutff/charmm22star-mut.ff/spc.itp'
2023-09-17T04:46:40,365   adding 'pmx/data/mutff/charmm22star-mut.ff/spce.itp'
2023-09-17T04:46:40,367   adding 'pmx/data/mutff/charmm22star-mut.ff/tip3p.itp'
2023-09-17T04:46:40,368   adding 'pmx/data/mutff/charmm22star-mut.ff/tip4p.itp'
2023-09-17T04:46:40,369   adding 'pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp'
2023-09-17T04:46:40,370   adding 'pmx/data/mutff/charmm22star-mut.ff/tip5p.itp'
2023-09-17T04:46:40,372   adding 'pmx/data/mutff/charmm22star-mut.ff/tips3p.itp'
2023-09-17T04:46:40,373   adding 'pmx/data/mutff/charmm22star-mut.ff/watermodels.dat'
2023-09-17T04:46:40,376   adding 'pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp'
2023-09-17T04:46:40,389   adding 'pmx/data/mutff/charmm36m-mut.ff/cmap.itp'
2023-09-17T04:46:40,470   adding 'pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp'
2023-09-17T04:46:40,596   adding 'pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp'
2023-09-17T04:46:40,611   adding 'pmx/data/mutff/charmm36m-mut.ff/forcefield.doc'
2023-09-17T04:46:40,612   adding 'pmx/data/mutff/charmm36m-mut.ff/forcefield.itp'
2023-09-17T04:46:40,613   adding 'pmx/data/mutff/charmm36m-mut.ff/gb.itp'
2023-09-17T04:46:40,614   adding 'pmx/data/mutff/charmm36m-mut.ff/ions.itp'
2023-09-17T04:46:40,615   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.arn'
2023-09-17T04:46:40,617   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb'
2023-09-17T04:46:40,618   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.hdb'
2023-09-17T04:46:40,620   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb'
2023-09-17T04:46:40,621   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.r2b'
2023-09-17T04:46:40,756   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.rtp'
2023-09-17T04:46:40,766   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.vsd'
2023-09-17T04:46:40,768   adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.arn'
2023-09-17T04:46:40,930   adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.mtp'
2023-09-17T04:46:41,017   adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.rtp'
2023-09-17T04:46:41,044   adding 'pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp'
2023-09-17T04:46:41,053   adding 'pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp'
2023-09-17T04:46:41,055   adding 'pmx/data/mutff/charmm36m-mut.ff/nbfix.itp'
2023-09-17T04:46:41,056   adding 'pmx/data/mutff/charmm36m-mut.ff/spc.itp'
2023-09-17T04:46:41,057   adding 'pmx/data/mutff/charmm36m-mut.ff/spce.itp'
2023-09-17T04:46:41,059   adding 'pmx/data/mutff/charmm36m-mut.ff/tip3p.itp'
2023-09-17T04:46:41,060   adding 'pmx/data/mutff/charmm36m-mut.ff/tip4p.itp'
2023-09-17T04:46:41,061   adding 'pmx/data/mutff/charmm36m-mut.ff/watermodels.dat'
2023-09-17T04:46:41,064   adding 'pmx/extensions/pmx/Energy.c'
2023-09-17T04:46:41,066   adding 'pmx/extensions/pmx/Geometry.c'
2023-09-17T04:46:41,069   adding 'pmx/extensions/pmx/Geometry.h'
2023-09-17T04:46:41,071   adding 'pmx/extensions/pmx/cpp_test.cpp'
2023-09-17T04:46:41,072   adding 'pmx/extensions/pmx/init.c'
2023-09-17T04:46:41,074   adding 'pmx/extensions/pmx/pmx.h'
2023-09-17T04:46:41,076   adding 'pmx/extensions/pmx/wrap_Geometry.c'
2023-09-17T04:46:41,078   adding 'pmx/extensions/xdr/trr2xtc.c'
2023-09-17T04:46:41,085   adding 'pmx/extensions/xdr/xdrfile.c'
2023-09-17T04:46:41,088   adding 'pmx/extensions/xdr/xdrfile.h'
2023-09-17T04:46:41,090   adding 'pmx/extensions/xdr/xdrfile_c_test.c'
2023-09-17T04:46:41,092   adding 'pmx/extensions/xdr/xdrfile_trr.c'
2023-09-17T04:46:41,093   adding 'pmx/extensions/xdr/xdrfile_trr.h'
2023-09-17T04:46:41,095   adding 'pmx/extensions/xdr/xdrfile_xtc.c'
2023-09-17T04:46:41,097   adding 'pmx/extensions/xdr/xdrfile_xtc.h'
2023-09-17T04:46:41,098   adding 'pmx/scripts/__init__.py'
2023-09-17T04:46:41,101   adding 'pmx/scripts/analyze_dhdl.py'
2023-09-17T04:46:41,104   adding 'pmx/scripts/atomMapping.py'
2023-09-17T04:46:41,106   adding 'pmx/scripts/build_cyclic_top.py'
2023-09-17T04:46:41,107   adding 'pmx/scripts/cli.py'
2023-09-17T04:46:41,114   adding 'pmx/scripts/generate_hybrid_residue.py'
2023-09-17T04:46:41,117   adding 'pmx/scripts/generate_hybrid_topology.py'
2023-09-17T04:46:41,119   adding 'pmx/scripts/ligandHybrid.py'
2023-09-17T04:46:41,120   adding 'pmx/scripts/make_double_box.py'
2023-09-17T04:46:41,123   adding 'pmx/scripts/md_setup.py'
2023-09-17T04:46:41,126   adding 'pmx/scripts/mutate.py'
2023-09-17T04:46:41,128   adding 'pmx/scripts/prepare_crooks_runs.py'
2023-09-17T04:46:41,129   adding 'pmx/scripts/set_gmxlib.py'
2023-09-17T04:46:41,132   adding 'pmx/scripts/setup_abfe.py'
2023-09-17T04:46:41,134   adding 'pmx_satumut-2.0.4.dist-info/LICENSE'
2023-09-17T04:46:41,135   adding 'pmx_satumut-2.0.4.dist-info/METADATA'
2023-09-17T04:46:41,136   adding 'pmx_satumut-2.0.4.dist-info/WHEEL'
2023-09-17T04:46:41,137   adding 'pmx_satumut-2.0.4.dist-info/entry_points.txt'
2023-09-17T04:46:41,138   adding 'pmx_satumut-2.0.4.dist-info/top_level.txt'
2023-09-17T04:46:41,142   adding 'pmx_satumut-2.0.4.dist-info/RECORD'
2023-09-17T04:46:41,208   removing build/bdist.linux-armv7l/wheel
2023-09-17T04:46:41,385   Building wheel for pmx-satumut (setup.py): finished with status 'done'
2023-09-17T04:46:41,458   Created wheel for pmx-satumut: filename=pmx_satumut-2.0.4-cp311-cp311-linux_armv7l.whl size=5893720 sha256=d2086ac47e0b4de69f968b372b06c80aa03b3e154d0b3dd4114adee7eae9b0c0
2023-09-17T04:46:41,459   Stored in directory: /tmp/pip-ephem-wheel-cache-x7pkhuqn/wheels/b4/d2/bd/61d6a0f770c2b554e737615ea158d0e636c49005d7d8171359
2023-09-17T04:46:41,478 Successfully built pmx-satumut
2023-09-17T04:46:41,634 Removed build tracker: '/tmp/pip-build-tracker-nyqjcwah'