2023-09-17T04:46:08,018 Created temporary directory: /tmp/pip-build-tracker-f7skmhk9
2023-09-17T04:46:08,020 Initialized build tracking at /tmp/pip-build-tracker-f7skmhk9
2023-09-17T04:46:08,021 Created build tracker: /tmp/pip-build-tracker-f7skmhk9
2023-09-17T04:46:08,021 Entered build tracker: /tmp/pip-build-tracker-f7skmhk9
2023-09-17T04:46:08,022 Created temporary directory: /tmp/pip-wheel-kiph15b_
2023-09-17T04:46:08,026 Created temporary directory: /tmp/pip-ephem-wheel-cache-exh3acin
2023-09-17T04:46:08,056 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-17T04:46:08,062 2 location(s) to search for versions of pmx-satumut:
2023-09-17T04:46:08,062 * https://pypi.org/simple/pmx-satumut/
2023-09-17T04:46:08,062 * https://www.piwheels.org/simple/pmx-satumut/
2023-09-17T04:46:08,063 Fetching project page and analyzing links: https://pypi.org/simple/pmx-satumut/
2023-09-17T04:46:08,063 Getting page https://pypi.org/simple/pmx-satumut/
2023-09-17T04:46:08,065 Found index url https://pypi.org/simple/
2023-09-17T04:46:08,292 Fetched page https://pypi.org/simple/pmx-satumut/ as application/vnd.pypi.simple.v1+json
2023-09-17T04:46:08,294   Link requires a different Python (3.11.2 not in: '>=2.7, <3'): https://files.pythonhosted.org/packages/9d/f3/d060deac232c6274f255fa1a7bddacc4048cba2d7fb004613fc1dde1123a/pmx-satumut-2.0.2.tar.gz (from https://pypi.org/simple/pmx-satumut/) (requires-python:>=2.7, <3)
2023-09-17T04:46:08,295   Skipping link: 2.0.2 Requires-Python >=2.7, <3: https://files.pythonhosted.org/packages/9d/f3/d060deac232c6274f255fa1a7bddacc4048cba2d7fb004613fc1dde1123a/pmx-satumut-2.0.2.tar.gz (from https://pypi.org/simple/pmx-satumut/) (requires-python:>=2.7, <3)
2023-09-17T04:46:08,295   Found link https://files.pythonhosted.org/packages/ef/7a/46b2633db0c9cece852152edf13ce0941be555137bfe133c8c38ddeb6f3d/pmx-satumut-2.0.3.tar.gz (from https://pypi.org/simple/pmx-satumut/), version: 2.0.3
2023-09-17T04:46:08,296   Found link https://files.pythonhosted.org/packages/72/c5/b3f3a7ea73cde31878d5a8b39755f723fceacfe3d671ad77b69b79d60b0f/pmx-satumut-2.0.4.tar.gz (from https://pypi.org/simple/pmx-satumut/) (requires-python:>=3.6), version: 2.0.4
2023-09-17T04:46:08,297 Fetching project page and analyzing links: https://www.piwheels.org/simple/pmx-satumut/
2023-09-17T04:46:08,298 Getting page https://www.piwheels.org/simple/pmx-satumut/
2023-09-17T04:46:08,299 Found index url https://www.piwheels.org/simple/
2023-09-17T04:46:08,615 Fetched page https://www.piwheels.org/simple/pmx-satumut/ as text/html
2023-09-17T04:46:08,619   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.4-cp39-cp39-linux_armv7l.whl#sha256=ef37fa7de18c4f8ad6201313b598e27f67c03c967c9e59a444645f5897fe7fd2 (from https://www.piwheels.org/simple/pmx-satumut/) (requires-python:>=3.6)
2023-09-17T04:46:08,620   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.4-cp39-cp39-linux_armv6l.whl#sha256=ef37fa7de18c4f8ad6201313b598e27f67c03c967c9e59a444645f5897fe7fd2 (from https://www.piwheels.org/simple/pmx-satumut/) (requires-python:>=3.6)
2023-09-17T04:46:08,620   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.4-cp37-cp37m-linux_armv7l.whl#sha256=9ad74a1e462b31238fc03094df0f7d66831bfc0e11319138079c16bfa7ab8792 (from https://www.piwheels.org/simple/pmx-satumut/) (requires-python:>=3.6)
2023-09-17T04:46:08,621   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.4-cp37-cp37m-linux_armv6l.whl#sha256=9ad74a1e462b31238fc03094df0f7d66831bfc0e11319138079c16bfa7ab8792 (from https://www.piwheels.org/simple/pmx-satumut/) (requires-python:>=3.6)
2023-09-17T04:46:08,621   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp39-cp39-linux_armv7l.whl#sha256=c88c5fcb51d11c22f11e1b7655a6de1399c175ec56a707b2043b953e583b8195 (from https://www.piwheels.org/simple/pmx-satumut/)
2023-09-17T04:46:08,622   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp39-cp39-linux_armv6l.whl#sha256=c88c5fcb51d11c22f11e1b7655a6de1399c175ec56a707b2043b953e583b8195 (from https://www.piwheels.org/simple/pmx-satumut/)
2023-09-17T04:46:08,623   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp37-cp37m-linux_armv7l.whl#sha256=8924f68e4e17468581042f6ed9ced75532b38316f5f49099911c43e5b3487f18 (from https://www.piwheels.org/simple/pmx-satumut/)
2023-09-17T04:46:08,623   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp37-cp37m-linux_armv6l.whl#sha256=8924f68e4e17468581042f6ed9ced75532b38316f5f49099911c43e5b3487f18 (from https://www.piwheels.org/simple/pmx-satumut/)
2023-09-17T04:46:08,623   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp35-cp35m-linux_armv7l.whl#sha256=48f313e84e29ab2d93241ac2c77777e82287084ee7f4c03b98ba90412abaa8a0 (from https://www.piwheels.org/simple/pmx-satumut/)
2023-09-17T04:46:08,624   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp35-cp35m-linux_armv6l.whl#sha256=48f313e84e29ab2d93241ac2c77777e82287084ee7f4c03b98ba90412abaa8a0 (from https://www.piwheels.org/simple/pmx-satumut/)
2023-09-17T04:46:08,624 Skipping link: not a file: https://www.piwheels.org/simple/pmx-satumut/
2023-09-17T04:46:08,625 Skipping link: not a file: https://pypi.org/simple/pmx-satumut/
2023-09-17T04:46:08,643 Given no hashes to check 1 links for project 'pmx-satumut': discarding no candidates
2023-09-17T04:46:08,661 Collecting pmx-satumut==2.0.3
2023-09-17T04:46:08,663   Created temporary directory: /tmp/pip-unpack-by57jug2
2023-09-17T04:46:09,122   Downloading pmx-satumut-2.0.3.tar.gz (6.0 MB)
2023-09-17T04:46:13,707   Added pmx-satumut==2.0.3 from https://files.pythonhosted.org/packages/ef/7a/46b2633db0c9cece852152edf13ce0941be555137bfe133c8c38ddeb6f3d/pmx-satumut-2.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-f7skmhk9'
2023-09-17T04:46:13,709   Running setup.py (path:/tmp/pip-wheel-kiph15b_/pmx-satumut_91adde23e2ef4c04a29ad22cdcbc68cf/setup.py) egg_info for package pmx-satumut
2023-09-17T04:46:13,711   Created temporary directory: /tmp/pip-pip-egg-info-5v7jt9hh
2023-09-17T04:46:13,711   Preparing metadata (setup.py): started
2023-09-17T04:46:13,713   Running command python setup.py egg_info
2023-09-17T04:46:14,757   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:320: InformationOnly: Normalizing 'v2.0.3' to '2.0.3'
2023-09-17T04:46:14,757     self.metadata.version = self._normalize_version(
2023-09-17T04:46:14,810   running egg_info
2023-09-17T04:46:14,812   creating /tmp/pip-pip-egg-info-5v7jt9hh/pmx_satumut.egg-info
2023-09-17T04:46:14,837   writing /tmp/pip-pip-egg-info-5v7jt9hh/pmx_satumut.egg-info/PKG-INFO
2023-09-17T04:46:14,841   writing dependency_links to /tmp/pip-pip-egg-info-5v7jt9hh/pmx_satumut.egg-info/dependency_links.txt
2023-09-17T04:46:14,843   writing entry points to /tmp/pip-pip-egg-info-5v7jt9hh/pmx_satumut.egg-info/entry_points.txt
2023-09-17T04:46:14,845   writing requirements to /tmp/pip-pip-egg-info-5v7jt9hh/pmx_satumut.egg-info/requires.txt
2023-09-17T04:46:14,846   writing top-level names to /tmp/pip-pip-egg-info-5v7jt9hh/pmx_satumut.egg-info/top_level.txt
2023-09-17T04:46:14,848   writing manifest file '/tmp/pip-pip-egg-info-5v7jt9hh/pmx_satumut.egg-info/SOURCES.txt'
2023-09-17T04:46:14,933   reading manifest file '/tmp/pip-pip-egg-info-5v7jt9hh/pmx_satumut.egg-info/SOURCES.txt'
2023-09-17T04:46:14,935   reading manifest template 'MANIFEST.in'
2023-09-17T04:46:14,960   adding license file 'LICENSE'
2023-09-17T04:46:14,972   writing manifest file '/tmp/pip-pip-egg-info-5v7jt9hh/pmx_satumut.egg-info/SOURCES.txt'
2023-09-17T04:46:15,080   Preparing metadata (setup.py): finished with status 'done'
2023-09-17T04:46:15,085   Source in /tmp/pip-wheel-kiph15b_/pmx-satumut_91adde23e2ef4c04a29ad22cdcbc68cf has version 2.0.3, which satisfies requirement pmx-satumut==2.0.3 from https://files.pythonhosted.org/packages/ef/7a/46b2633db0c9cece852152edf13ce0941be555137bfe133c8c38ddeb6f3d/pmx-satumut-2.0.3.tar.gz
2023-09-17T04:46:15,086   Removed pmx-satumut==2.0.3 from https://files.pythonhosted.org/packages/ef/7a/46b2633db0c9cece852152edf13ce0941be555137bfe133c8c38ddeb6f3d/pmx-satumut-2.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-f7skmhk9'
2023-09-17T04:46:15,091 Created temporary directory: /tmp/pip-unpack-333lr0tq
2023-09-17T04:46:15,092 Created temporary directory: /tmp/pip-unpack-dbh7j5sa
2023-09-17T04:46:15,103 Building wheels for collected packages: pmx-satumut
2023-09-17T04:46:15,130   Created temporary directory: /tmp/pip-wheel-vy9j6pgy
2023-09-17T04:46:15,132   Building wheel for pmx-satumut (setup.py): started
2023-09-17T04:46:15,136   Destination directory: /tmp/pip-wheel-vy9j6pgy
2023-09-17T04:46:15,138   Running command python setup.py bdist_wheel
2023-09-17T04:46:16,131   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:320: InformationOnly: Normalizing 'v2.0.3' to '2.0.3'
2023-09-17T04:46:16,131     self.metadata.version = self._normalize_version(
2023-09-17T04:46:16,180   running bdist_wheel
2023-09-17T04:46:16,298   running build
2023-09-17T04:46:16,298   running build_py
2023-09-17T04:46:16,303   creating build
2023-09-17T04:46:16,304   creating build/lib.linux-armv7l-cpython-311
2023-09-17T04:46:16,304   creating build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,306   copying pmx/_version.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,307   copying pmx/histogram.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,309   copying pmx/atomselection.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,312   copying pmx/library.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,316   copying pmx/estimators.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,320   copying pmx/__init__.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,321   copying pmx/options.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,324   copying pmx/futil.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,326   copying pmx/ndx.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,328   copying pmx/model.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,331   copying pmx/odict.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,334   copying pmx/ffparser.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,337   copying pmx/xtc.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,339   copying pmx/forcefield2.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,342   copying pmx/parser.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,344   copying pmx/cpp.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,347   copying pmx/builder.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,349   copying pmx/xdrfile.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,351   copying pmx/geometry.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,353   copying pmx/tCNC.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,356   copying pmx/atom.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,358   copying pmx/chain.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,361   copying pmx/mutdb.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,363   copying pmx/rotamer.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,365   copying pmx/molecule.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,368   copying pmx/forcefield.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:16,371   running egg_info
2023-09-17T04:46:16,431   writing pmx_satumut.egg-info/PKG-INFO
2023-09-17T04:46:16,438   writing dependency_links to pmx_satumut.egg-info/dependency_links.txt
2023-09-17T04:46:16,443   writing entry points to pmx_satumut.egg-info/entry_points.txt
2023-09-17T04:46:16,447   writing requirements to pmx_satumut.egg-info/requires.txt
2023-09-17T04:46:16,451   writing top-level names to pmx_satumut.egg-info/top_level.txt
2023-09-17T04:46:16,487   reading manifest file 'pmx_satumut.egg-info/SOURCES.txt'
2023-09-17T04:46:16,496   reading manifest template 'MANIFEST.in'
2023-09-17T04:46:16,514   adding license file 'LICENSE'
2023-09-17T04:46:16,531   writing manifest file 'pmx_satumut.egg-info/SOURCES.txt'
2023-09-17T04:46:16,534   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.data' is absent from the `packages` configuration.
2023-09-17T04:46:16,535   !!

2023-09-17T04:46:16,535           ********************************************************************************
2023-09-17T04:46:16,536           ############################
2023-09-17T04:46:16,536           # Package would be ignored #
2023-09-17T04:46:16,537           ############################
2023-09-17T04:46:16,537           Python recognizes 'pmx.data' as an importable package[^1],
2023-09-17T04:46:16,538           but it is absent from setuptools' `packages` configuration.

2023-09-17T04:46:16,538           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-17T04:46:16,539           package, please make sure that 'pmx.data' is explicitly added
2023-09-17T04:46:16,539           to the `packages` configuration field.

2023-09-17T04:46:16,540           Alternatively, you can also rely on setuptools' discovery methods
2023-09-17T04:46:16,541           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-17T04:46:16,541           instead of `find_packages(...)`/`find:`).

2023-09-17T04:46:16,542           You can read more about "package discovery" on setuptools documentation page:

2023-09-17T04:46:16,544           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-17T04:46:16,577           If you don't want 'pmx.data' to be distributed and are
2023-09-17T04:46:16,578           already explicitly excluding 'pmx.data' via
2023-09-17T04:46:16,578           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-17T04:46:16,579           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-17T04:46:16,579           combination with a more fine grained `package-data` configuration.

2023-09-17T04:46:16,581           You can read more about "package data files" on setuptools documentation page:

2023-09-17T04:46:16,582           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-17T04:46:16,583           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-17T04:46:16,584                 even if it does not contain any `.py` files.
2023-09-17T04:46:16,584                 On the other hand, currently there is no concept of package data
2023-09-17T04:46:16,585                 directory, all directories are treated like packages.
2023-09-17T04:46:16,585           ********************************************************************************

2023-09-17T04:46:16,586   !!
2023-09-17T04:46:16,587     check.warn(importable)
2023-09-17T04:46:16,588   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.data.mutff' is absent from the `packages` configuration.
2023-09-17T04:46:16,588   !!

2023-09-17T04:46:16,589           ********************************************************************************
2023-09-17T04:46:16,590           ############################
2023-09-17T04:46:16,590           # Package would be ignored #
2023-09-17T04:46:16,591           ############################
2023-09-17T04:46:16,591           Python recognizes 'pmx.data.mutff' as an importable package[^1],
2023-09-17T04:46:16,592           but it is absent from setuptools' `packages` configuration.

2023-09-17T04:46:16,593           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-17T04:46:16,594           package, please make sure that 'pmx.data.mutff' is explicitly added
2023-09-17T04:46:16,594           to the `packages` configuration field.

2023-09-17T04:46:16,595           Alternatively, you can also rely on setuptools' discovery methods
2023-09-17T04:46:16,595           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-17T04:46:16,596           instead of `find_packages(...)`/`find:`).

2023-09-17T04:46:16,597           You can read more about "package discovery" on setuptools documentation page:

2023-09-17T04:46:16,597           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-17T04:46:16,598           If you don't want 'pmx.data.mutff' to be distributed and are
2023-09-17T04:46:16,599           already explicitly excluding 'pmx.data.mutff' via
2023-09-17T04:46:16,599           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-17T04:46:16,600           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-17T04:46:16,600           combination with a more fine grained `package-data` configuration.

2023-09-17T04:46:16,601           You can read more about "package data files" on setuptools documentation page:

2023-09-17T04:46:16,602           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-17T04:46:16,603           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-17T04:46:16,604                 even if it does not contain any `.py` files.
2023-09-17T04:46:16,604                 On the other hand, currently there is no concept of package data
2023-09-17T04:46:16,605                 directory, all directories are treated like packages.
2023-09-17T04:46:16,605           ********************************************************************************

2023-09-17T04:46:16,606   !!
2023-09-17T04:46:16,607     check.warn(importable)
2023-09-17T04:46:16,607   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.data.mutff45' is absent from the `packages` configuration.
2023-09-17T04:46:16,608   !!

2023-09-17T04:46:16,609           ********************************************************************************
2023-09-17T04:46:16,609           ############################
2023-09-17T04:46:16,610           # Package would be ignored #
2023-09-17T04:46:16,610           ############################
2023-09-17T04:46:16,611           Python recognizes 'pmx.data.mutff45' as an importable package[^1],
2023-09-17T04:46:16,611           but it is absent from setuptools' `packages` configuration.

2023-09-17T04:46:16,612           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-17T04:46:16,613           package, please make sure that 'pmx.data.mutff45' is explicitly added
2023-09-17T04:46:16,613           to the `packages` configuration field.

2023-09-17T04:46:16,614           Alternatively, you can also rely on setuptools' discovery methods
2023-09-17T04:46:16,615           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-17T04:46:16,616           instead of `find_packages(...)`/`find:`).

2023-09-17T04:46:16,617           You can read more about "package discovery" on setuptools documentation page:

2023-09-17T04:46:16,618           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-17T04:46:16,619           If you don't want 'pmx.data.mutff45' to be distributed and are
2023-09-17T04:46:16,619           already explicitly excluding 'pmx.data.mutff45' via
2023-09-17T04:46:16,620           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-17T04:46:16,621           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-17T04:46:16,621           combination with a more fine grained `package-data` configuration.

2023-09-17T04:46:16,622           You can read more about "package data files" on setuptools documentation page:

2023-09-17T04:46:16,623           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-17T04:46:16,625           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-17T04:46:16,625                 even if it does not contain any `.py` files.
2023-09-17T04:46:16,625                 On the other hand, currently there is no concept of package data
2023-09-17T04:46:16,626                 directory, all directories are treated like packages.
2023-09-17T04:46:16,626           ********************************************************************************

2023-09-17T04:46:16,627   !!
2023-09-17T04:46:16,628     check.warn(importable)
2023-09-17T04:46:16,628   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.data.mutff45dna' is absent from the `packages` configuration.
2023-09-17T04:46:16,629   !!

2023-09-17T04:46:16,630           ********************************************************************************
2023-09-17T04:46:16,631           ############################
2023-09-17T04:46:16,631           # Package would be ignored #
2023-09-17T04:46:16,631           ############################
2023-09-17T04:46:16,632           Python recognizes 'pmx.data.mutff45dna' as an importable package[^1],
2023-09-17T04:46:16,632           but it is absent from setuptools' `packages` configuration.

2023-09-17T04:46:16,633           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-17T04:46:16,634           package, please make sure that 'pmx.data.mutff45dna' is explicitly added
2023-09-17T04:46:16,634           to the `packages` configuration field.

2023-09-17T04:46:16,635           Alternatively, you can also rely on setuptools' discovery methods
2023-09-17T04:46:16,636           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-17T04:46:16,636           instead of `find_packages(...)`/`find:`).

2023-09-17T04:46:16,637           You can read more about "package discovery" on setuptools documentation page:

2023-09-17T04:46:16,638           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-17T04:46:16,639           If you don't want 'pmx.data.mutff45dna' to be distributed and are
2023-09-17T04:46:16,640           already explicitly excluding 'pmx.data.mutff45dna' via
2023-09-17T04:46:16,640           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-17T04:46:16,641           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-17T04:46:16,641           combination with a more fine grained `package-data` configuration.

2023-09-17T04:46:16,642           You can read more about "package data files" on setuptools documentation page:

2023-09-17T04:46:16,643           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-17T04:46:16,645           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-17T04:46:16,645                 even if it does not contain any `.py` files.
2023-09-17T04:46:16,646                 On the other hand, currently there is no concept of package data
2023-09-17T04:46:16,646                 directory, all directories are treated like packages.
2023-09-17T04:46:16,647           ********************************************************************************

2023-09-17T04:46:16,648   !!
2023-09-17T04:46:16,648     check.warn(importable)
2023-09-17T04:46:16,649   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.extensions.pmx' is absent from the `packages` configuration.
2023-09-17T04:46:16,649   !!

2023-09-17T04:46:16,650           ********************************************************************************
2023-09-17T04:46:16,651           ############################
2023-09-17T04:46:16,651           # Package would be ignored #
2023-09-17T04:46:16,652           ############################
2023-09-17T04:46:16,653           Python recognizes 'pmx.extensions.pmx' as an importable package[^1],
2023-09-17T04:46:16,653           but it is absent from setuptools' `packages` configuration.

2023-09-17T04:46:16,654           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-17T04:46:16,654           package, please make sure that 'pmx.extensions.pmx' is explicitly added
2023-09-17T04:46:16,655           to the `packages` configuration field.

2023-09-17T04:46:16,656           Alternatively, you can also rely on setuptools' discovery methods
2023-09-17T04:46:16,656           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-17T04:46:16,657           instead of `find_packages(...)`/`find:`).

2023-09-17T04:46:16,658           You can read more about "package discovery" on setuptools documentation page:

2023-09-17T04:46:16,659           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-17T04:46:16,660           If you don't want 'pmx.extensions.pmx' to be distributed and are
2023-09-17T04:46:16,660           already explicitly excluding 'pmx.extensions.pmx' via
2023-09-17T04:46:16,660           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-17T04:46:16,661           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-17T04:46:16,661           combination with a more fine grained `package-data` configuration.

2023-09-17T04:46:16,662           You can read more about "package data files" on setuptools documentation page:

2023-09-17T04:46:16,664           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-17T04:46:16,667           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-17T04:46:16,669                 even if it does not contain any `.py` files.
2023-09-17T04:46:16,698                 On the other hand, currently there is no concept of package data
2023-09-17T04:46:16,701                 directory, all directories are treated like packages.
2023-09-17T04:46:16,708           ********************************************************************************

2023-09-17T04:46:16,733   !!
2023-09-17T04:46:16,753     check.warn(importable)
2023-09-17T04:46:16,771   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.extensions.xdr' is absent from the `packages` configuration.
2023-09-17T04:46:16,788   !!

2023-09-17T04:46:16,815           ********************************************************************************
2023-09-17T04:46:16,829           ############################
2023-09-17T04:46:16,842           # Package would be ignored #
2023-09-17T04:46:16,843           ############################
2023-09-17T04:46:16,850           Python recognizes 'pmx.extensions.xdr' as an importable package[^1],
2023-09-17T04:46:16,850           but it is absent from setuptools' `packages` configuration.

2023-09-17T04:46:16,851           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-17T04:46:16,852           package, please make sure that 'pmx.extensions.xdr' is explicitly added
2023-09-17T04:46:16,852           to the `packages` configuration field.

2023-09-17T04:46:16,853           Alternatively, you can also rely on setuptools' discovery methods
2023-09-17T04:46:16,854           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-17T04:46:16,854           instead of `find_packages(...)`/`find:`).

2023-09-17T04:46:16,856           You can read more about "package discovery" on setuptools documentation page:

2023-09-17T04:46:16,858           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-17T04:46:16,859           If you don't want 'pmx.extensions.xdr' to be distributed and are
2023-09-17T04:46:16,862           already explicitly excluding 'pmx.extensions.xdr' via
2023-09-17T04:46:16,863           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-17T04:46:16,864           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-17T04:46:16,864           combination with a more fine grained `package-data` configuration.

2023-09-17T04:46:16,868           You can read more about "package data files" on setuptools documentation page:

2023-09-17T04:46:16,870           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-17T04:46:16,876           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-17T04:46:16,876                 even if it does not contain any `.py` files.
2023-09-17T04:46:16,877                 On the other hand, currently there is no concept of package data
2023-09-17T04:46:16,877                 directory, all directories are treated like packages.
2023-09-17T04:46:16,879           ********************************************************************************

2023-09-17T04:46:16,880   !!
2023-09-17T04:46:16,881     check.warn(importable)
2023-09-17T04:46:16,881   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.scripts' is absent from the `packages` configuration.
2023-09-17T04:46:16,882   !!

2023-09-17T04:46:16,883           ********************************************************************************
2023-09-17T04:46:16,885           ############################
2023-09-17T04:46:16,885           # Package would be ignored #
2023-09-17T04:46:16,886           ############################
2023-09-17T04:46:16,886           Python recognizes 'pmx.scripts' as an importable package[^1],
2023-09-17T04:46:16,887           but it is absent from setuptools' `packages` configuration.

2023-09-17T04:46:16,888           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-17T04:46:16,888           package, please make sure that 'pmx.scripts' is explicitly added
2023-09-17T04:46:16,889           to the `packages` configuration field.

2023-09-17T04:46:16,890           Alternatively, you can also rely on setuptools' discovery methods
2023-09-17T04:46:16,891           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-17T04:46:16,891           instead of `find_packages(...)`/`find:`).

2023-09-17T04:46:16,892           You can read more about "package discovery" on setuptools documentation page:

2023-09-17T04:46:16,893           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-17T04:46:16,894           If you don't want 'pmx.scripts' to be distributed and are
2023-09-17T04:46:16,895           already explicitly excluding 'pmx.scripts' via
2023-09-17T04:46:16,895           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-17T04:46:16,896           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-17T04:46:16,896           combination with a more fine grained `package-data` configuration.

2023-09-17T04:46:16,897           You can read more about "package data files" on setuptools documentation page:

2023-09-17T04:46:16,898           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-17T04:46:16,900           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-17T04:46:16,901                 even if it does not contain any `.py` files.
2023-09-17T04:46:16,901                 On the other hand, currently there is no concept of package data
2023-09-17T04:46:16,902                 directory, all directories are treated like packages.
2023-09-17T04:46:16,902           ********************************************************************************

2023-09-17T04:46:16,903   !!
2023-09-17T04:46:16,904     check.warn(importable)
2023-09-17T04:46:16,904   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.scripts.ligands' is absent from the `packages` configuration.
2023-09-17T04:46:16,904   !!

2023-09-17T04:46:16,906           ********************************************************************************
2023-09-17T04:46:16,906           ############################
2023-09-17T04:46:16,906           # Package would be ignored #
2023-09-17T04:46:16,907           ############################
2023-09-17T04:46:16,907           Python recognizes 'pmx.scripts.ligands' as an importable package[^1],
2023-09-17T04:46:16,908           but it is absent from setuptools' `packages` configuration.

2023-09-17T04:46:16,908           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-17T04:46:16,909           package, please make sure that 'pmx.scripts.ligands' is explicitly added
2023-09-17T04:46:16,909           to the `packages` configuration field.

2023-09-17T04:46:16,910           Alternatively, you can also rely on setuptools' discovery methods
2023-09-17T04:46:16,910           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-17T04:46:16,911           instead of `find_packages(...)`/`find:`).

2023-09-17T04:46:16,912           You can read more about "package discovery" on setuptools documentation page:

2023-09-17T04:46:16,913           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-17T04:46:16,913           If you don't want 'pmx.scripts.ligands' to be distributed and are
2023-09-17T04:46:16,914           already explicitly excluding 'pmx.scripts.ligands' via
2023-09-17T04:46:16,914           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-17T04:46:16,915           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-17T04:46:16,915           combination with a more fine grained `package-data` configuration.

2023-09-17T04:46:16,916           You can read more about "package data files" on setuptools documentation page:

2023-09-17T04:46:16,917           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-17T04:46:16,919           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-17T04:46:16,919                 even if it does not contain any `.py` files.
2023-09-17T04:46:16,920                 On the other hand, currently there is no concept of package data
2023-09-17T04:46:16,920                 directory, all directories are treated like packages.
2023-09-17T04:46:16,921           ********************************************************************************

2023-09-17T04:46:16,922   !!
2023-09-17T04:46:16,922     check.warn(importable)
2023-09-17T04:46:16,923   creating build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-17T04:46:16,923   copying pmx/data/bbdep.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-17T04:46:16,924   copying pmx/data/blosum62_new.mat -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-17T04:46:16,924   copying pmx/data/bp.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-17T04:46:16,925   copying pmx/data/bp_amber.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-17T04:46:16,925   copying pmx/data/bp_charmm.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-17T04:46:16,926   copying pmx/data/ffamber99sb.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-17T04:46:16,926   copying pmx/data/ffamber99sbbon.itp -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-17T04:46:16,936   copying pmx/data/ffamber99sbnb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-17T04:46:16,938   copying pmx/data/rna.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-17T04:46:16,944   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:16,960   copying pmx/data/mutff/ffamber99sb-c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:16,974   copying pmx/data/mutff/ffamber99sb-n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:16,976   copying pmx/data/mutff/ffamber99sb.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:16,976   copying pmx/data/mutff/ffamber99sb.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:16,979   copying pmx/data/mutff/ffamber99sb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:16,979   copying pmx/data/mutff/ffamber99sb.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:16,980   copying pmx/data/mutff/ffamber99sb.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:17,004   copying pmx/data/mutff/ffamber99sbbon.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:17,007   copying pmx/data/mutff/ffamber99sbnb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:17,010   copying pmx/data/mutff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:17,012   copying pmx/data/mutff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:17,014   copying pmx/data/mutff/tip3p.gro -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:17,018   copying pmx/data/mutff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-17T04:46:17,020   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-17T04:46:17,021   copying pmx/data/mutff45/atommass.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-17T04:46:17,023   copying pmx/data/mutff45/elements.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-17T04:46:17,026   copying pmx/data/mutff45/residuetypes.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-17T04:46:17,028   copying pmx/data/mutff45/spc216.gro -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-17T04:46:17,031   copying pmx/data/mutff45/specbond.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-17T04:46:17,033   copying pmx/data/mutff45/vdwradii.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-17T04:46:17,035   copying pmx/data/mutff45/xlateat.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-17T04:46:17,036   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,037   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,040   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,041   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,044   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,046   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,048   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,052   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,055   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,057   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,079   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,081   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,083   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,085   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,088   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,091   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,093   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,095   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,097   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,099   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,101   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,145   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,165   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,167   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,169   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,171   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,174   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,176   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,178   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,180   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,182   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,184   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,186   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,188   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:17,190   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,191   copying pmx/data/mutff45/amber99sbmut.ff/Makefile.am -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,193   copying pmx/data/mutff45/amber99sbmut.ff/Makefile.in -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,195   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,198   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,200   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,202   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,204   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,206   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,210   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,212   copying pmx/data/mutff45/amber99sbmut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,214   copying pmx/data/mutff45/amber99sbmut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,216   copying pmx/data/mutff45/amber99sbmut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,218   copying pmx/data/mutff45/amber99sbmut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,220   copying pmx/data/mutff45/amber99sbmut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,223   copying pmx/data/mutff45/amber99sbmut.ff/dummies.atp.save -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,224   copying pmx/data/mutff45/amber99sbmut.ff/dummies_nonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,226   copying pmx/data/mutff45/amber99sbmut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,230   copying pmx/data/mutff45/amber99sbmut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,232   copying pmx/data/mutff45/amber99sbmut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,234   copying pmx/data/mutff45/amber99sbmut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,236   copying pmx/data/mutff45/amber99sbmut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,238   copying pmx/data/mutff45/amber99sbmut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,240   copying pmx/data/mutff45/amber99sbmut.ff/list.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,242   copying pmx/data/mutff45/amber99sbmut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,292   copying pmx/data/mutff45/amber99sbmut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,318   copying pmx/data/mutff45/amber99sbmut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,320   copying pmx/data/mutff45/amber99sbmut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,323   copying pmx/data/mutff45/amber99sbmut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,326   copying pmx/data/mutff45/amber99sbmut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,332   copying pmx/data/mutff45/amber99sbmut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,338   copying pmx/data/mutff45/amber99sbmut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,344   copying pmx/data/mutff45/amber99sbmut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,349   copying pmx/data/mutff45/amber99sbmut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,354   copying pmx/data/mutff45/amber99sbmut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,360   copying pmx/data/mutff45/amber99sbmut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,365   copying pmx/data/mutff45/amber99sbmut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,370   copying pmx/data/mutff45/amber99sbmut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:17,377   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,381   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,392   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,402   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,405   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,408   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,410   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,415   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,418   copying pmx/data/mutff45/charmm22starmut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,422   copying pmx/data/mutff45/charmm22starmut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,426   copying pmx/data/mutff45/charmm22starmut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,429   copying pmx/data/mutff45/charmm22starmut.ff/dna.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,431   copying pmx/data/mutff45/charmm22starmut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,439   copying pmx/data/mutff45/charmm22starmut.ff/dna.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,457   copying pmx/data/mutff45/charmm22starmut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,471   copying pmx/data/mutff45/charmm22starmut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,480   copying pmx/data/mutff45/charmm22starmut.ff/ffnabonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,486   copying pmx/data/mutff45/charmm22starmut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,500   copying pmx/data/mutff45/charmm22starmut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,510   copying pmx/data/mutff45/charmm22starmut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,512   copying pmx/data/mutff45/charmm22starmut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,515   copying pmx/data/mutff45/charmm22starmut.ff/gb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,517   copying pmx/data/mutff45/charmm22starmut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,520   copying pmx/data/mutff45/charmm22starmut.ff/lipids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,522   copying pmx/data/mutff45/charmm22starmut.ff/lipids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,527   copying pmx/data/mutff45/charmm22starmut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,529   copying pmx/data/mutff45/charmm22starmut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,580   copying pmx/data/mutff45/charmm22starmut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,629   copying pmx/data/mutff45/charmm22starmut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,636   copying pmx/data/mutff45/charmm22starmut.ff/rna.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,644   copying pmx/data/mutff45/charmm22starmut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,649   copying pmx/data/mutff45/charmm22starmut.ff/rna.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,661   copying pmx/data/mutff45/charmm22starmut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,670   copying pmx/data/mutff45/charmm22starmut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,674   copying pmx/data/mutff45/charmm22starmut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,677   copying pmx/data/mutff45/charmm22starmut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,679   copying pmx/data/mutff45/charmm22starmut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,681   copying pmx/data/mutff45/charmm22starmut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,683   copying pmx/data/mutff45/charmm22starmut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,685   copying pmx/data/mutff45/charmm22starmut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,687   copying pmx/data/mutff45/charmm22starmut.ff/tips3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,689   copying pmx/data/mutff45/charmm22starmut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:17,691   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,692   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,694   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,695   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,697   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,700   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,701   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,704   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,706   copying pmx/data/mutff45/charmm36mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,708   copying pmx/data/mutff45/charmm36mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,712   copying pmx/data/mutff45/charmm36mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,716   copying pmx/data/mutff45/charmm36mut.ff/ffnabonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,719   copying pmx/data/mutff45/charmm36mut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,724   copying pmx/data/mutff45/charmm36mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,728   copying pmx/data/mutff45/charmm36mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,730   copying pmx/data/mutff45/charmm36mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,732   copying pmx/data/mutff45/charmm36mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,734   copying pmx/data/mutff45/charmm36mut.ff/gromacs_c27_ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,737   copying pmx/data/mutff45/charmm36mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,739   copying pmx/data/mutff45/charmm36mut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,741   copying pmx/data/mutff45/charmm36mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,792   copying pmx/data/mutff45/charmm36mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,824   copying pmx/data/mutff45/charmm36mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,827   copying pmx/data/mutff45/charmm36mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,829   copying pmx/data/mutff45/charmm36mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,831   copying pmx/data/mutff45/charmm36mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,833   copying pmx/data/mutff45/charmm36mut.ff/tips3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,836   copying pmx/data/mutff45/charmm36mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,838   copying pmx/data/mutff45/charmm36mut.ff/watermodels.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:17,840   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,841   copying pmx/data/mutff45/oplsaamut.ff/1propanol.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,843   copying pmx/data/mutff45/oplsaamut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,846   copying pmx/data/mutff45/oplsaamut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,848   copying pmx/data/mutff45/oplsaamut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,851   copying pmx/data/mutff45/oplsaamut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,853   copying pmx/data/mutff45/oplsaamut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,856   copying pmx/data/mutff45/oplsaamut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,859   copying pmx/data/mutff45/oplsaamut.ff/atomname2type.n2t -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,861   copying pmx/data/mutff45/oplsaamut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,864   copying pmx/data/mutff45/oplsaamut.ff/backup_atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,868   copying pmx/data/mutff45/oplsaamut.ff/dummies.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,871   copying pmx/data/mutff45/oplsaamut.ff/ethanol.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,873   copying pmx/data/mutff45/oplsaamut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,879   copying pmx/data/mutff45/oplsaamut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,883   copying pmx/data/mutff45/oplsaamut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,885   copying pmx/data/mutff45/oplsaamut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,887   copying pmx/data/mutff45/oplsaamut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,890   copying pmx/data/mutff45/oplsaamut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,892   copying pmx/data/mutff45/oplsaamut.ff/methanol.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,894   copying pmx/data/mutff45/oplsaamut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,951   copying pmx/data/mutff45/oplsaamut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,981   copying pmx/data/mutff45/oplsaamut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,983   copying pmx/data/mutff45/oplsaamut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,985   copying pmx/data/mutff45/oplsaamut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,987   copying pmx/data/mutff45/oplsaamut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,989   copying pmx/data/mutff45/oplsaamut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,991   copying pmx/data/mutff45/oplsaamut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:17,993   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna
2023-09-17T04:46:17,993   copying pmx/data/mutff45dna/atommass.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna
2023-09-17T04:46:17,996   copying pmx/data/mutff45dna/elements.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna
2023-09-17T04:46:17,998   copying pmx/data/mutff45dna/residuetypes.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna
2023-09-17T04:46:18,001   copying pmx/data/mutff45dna/spc216.gro -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna
2023-09-17T04:46:18,005   copying pmx/data/mutff45dna/specbond.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna
2023-09-17T04:46:18,007   copying pmx/data/mutff45dna/vdwradii.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna
2023-09-17T04:46:18,009   copying pmx/data/mutff45dna/xlateat.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna
2023-09-17T04:46:18,013   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,016   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,022   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,027   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,029   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,032   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,034   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,036   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,040   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,043   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,046   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,051   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,072   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,075   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,077   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,080   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,082   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,085   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,087   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,091   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,093   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,095   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,097   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,099   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,101   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,143   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,171   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,185   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,195   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,199   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,202   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,204   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,206   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,208   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,211   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,214   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,217   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,222   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,224   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,226   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,228   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,231   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:18,233   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,234   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,236   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,238   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,240   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,242   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,245   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,249   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,251   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,253   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,257   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,277   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,281   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,283   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,285   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,287   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,290   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,293   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,296   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,299   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,301   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,303   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,305   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,308   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,375   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,406   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,418   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,424   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,427   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,431   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,433   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,436   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,439   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,443   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,445   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,448   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,450   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,453   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,456   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,459   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,461   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:18,464   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,465   copying pmx/data/mutff45dna/charmm36m-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,469   copying pmx/data/mutff45dna/charmm36m-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,474   copying pmx/data/mutff45dna/charmm36m-mut.ff/dna.rtp_backup -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,477   copying pmx/data/mutff45dna/charmm36m-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,512   copying pmx/data/mutff45dna/charmm36m-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,554   copying pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,557   copying pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,559   copying pmx/data/mutff45dna/charmm36m-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,562   copying pmx/data/mutff45dna/charmm36m-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,564   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,567   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,569   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,572   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,575   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,577   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,615   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,618   copying pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,628   copying pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,636   copying pmx/data/mutff45dna/charmm36m-mut.ff/nbfix.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,638   copying pmx/data/mutff45dna/charmm36m-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,640   copying pmx/data/mutff45dna/charmm36m-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,643   copying pmx/data/mutff45dna/charmm36m-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,645   copying pmx/data/mutff45dna/charmm36m-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,648   copying pmx/data/mutff45dna/charmm36m-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:18,650   creating build/lib.linux-armv7l-cpython-311/pmx/extensions
2023-09-17T04:46:18,651   creating build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-17T04:46:18,652   copying pmx/extensions/pmx/Energy.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-17T04:46:18,656   copying pmx/extensions/pmx/Geometry.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-17T04:46:18,659   copying pmx/extensions/pmx/Geometry.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-17T04:46:18,662   copying pmx/extensions/pmx/cpp_test.cpp -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-17T04:46:18,665   copying pmx/extensions/pmx/init.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-17T04:46:18,667   copying pmx/extensions/pmx/pmx.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-17T04:46:18,670   copying pmx/extensions/pmx/wrap_Geometry.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-17T04:46:18,674   creating build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-17T04:46:18,675   copying pmx/extensions/xdr/trr2xtc.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-17T04:46:18,678   copying pmx/extensions/xdr/xdrfile.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-17T04:46:18,682   copying pmx/extensions/xdr/xdrfile.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-17T04:46:18,685   copying pmx/extensions/xdr/xdrfile_c_test.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-17T04:46:18,688   copying pmx/extensions/xdr/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-17T04:46:18,692   copying pmx/extensions/xdr/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-17T04:46:18,694   copying pmx/extensions/xdr/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-17T04:46:18,696   copying pmx/extensions/xdr/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-17T04:46:18,698   creating build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:18,700   copying pmx/scripts/__init__.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:18,702   copying pmx/scripts/analyze_dhdl.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:18,705   copying pmx/scripts/cli.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:18,708   copying pmx/scripts/generate_hybrid_residue.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:18,712   copying pmx/scripts/generate_hybrid_topology.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:18,715   copying pmx/scripts/make_amber.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:18,718   copying pmx/scripts/md_setup.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:18,721   copying pmx/scripts/mutate.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:18,724   copying pmx/scripts/prepare_crooks_runs.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:18,727   copying pmx/scripts/set_gmxlib.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-17T04:46:18,729   creating build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands
2023-09-17T04:46:18,730   copying pmx/scripts/ligands/atoms_to_morph.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands
2023-09-17T04:46:18,734   copying pmx/scripts/ligands/atoms_to_morph_rdkit2018.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands
2023-09-17T04:46:18,738   copying pmx/scripts/ligands/build_mst_graph.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands
2023-09-17T04:46:18,741   copying pmx/scripts/ligands/make_hybrid.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands
2023-09-17T04:46:18,744   copying pmx/scripts/ligands/one_ff_file.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands
2023-09-17T04:46:18,748   UPDATING build/lib.linux-armv7l-cpython-311/pmx/_version.py
2023-09-17T04:46:18,750   set build/lib.linux-armv7l-cpython-311/pmx/_version.py to 'v2.0.3'
2023-09-17T04:46:18,750   running build_ext
2023-09-17T04:46:19,253   building 'pmx._pmx' extension
2023-09-17T04:46:19,254   creating build/temp.linux-armv7l-cpython-311
2023-09-17T04:46:19,255   creating build/temp.linux-armv7l-cpython-311/pmx
2023-09-17T04:46:19,256   creating build/temp.linux-armv7l-cpython-311/pmx/extensions
2023-09-17T04:46:19,257   creating build/temp.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-17T04:46:19,258   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipmx/extensions/pmx -I/usr/include/python3.11 -c pmx/extensions/pmx/Energy.c -o build/temp.linux-armv7l-cpython-311/pmx/extensions/pmx/Energy.o
2023-09-17T04:46:19,658   pmx/extensions/pmx/Energy.c: In function ‘wrap_calc_improper_energy’:
2023-09-17T04:46:19,659   pmx/extensions/pmx/Energy.c:287:10: warning: implicit declaration of function ‘PyInt_AsLong’; did you mean ‘PyLong_AsLong’? [-Wimplicit-function-declaration]
2023-09-17T04:46:19,659     287 |   mult = PyInt_AsLong( PySequence_GetItem(dihedO, 7) );
2023-09-17T04:46:19,660         |          ^~~~~~~~~~~~
2023-09-17T04:46:19,660         |          PyLong_AsLong
2023-09-17T04:46:20,364   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipmx/extensions/pmx -I/usr/include/python3.11 -c pmx/extensions/pmx/Geometry.c -o build/temp.linux-armv7l-cpython-311/pmx/extensions/pmx/Geometry.o
2023-09-17T04:46:20,777   pmx/extensions/pmx/Geometry.c: In function ‘spread_atoms_on_grid’:
2023-09-17T04:46:20,777   pmx/extensions/pmx/Geometry.c:520:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable]
2023-09-17T04:46:20,778     520 |   int nx, ny, nz;
2023-09-17T04:46:20,778         |               ^~
2023-09-17T04:46:20,779   pmx/extensions/pmx/Geometry.c: In function ‘search_neighbors’:
2023-09-17T04:46:20,780   pmx/extensions/pmx/Geometry.c:579:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable]
2023-09-17T04:46:20,780     579 |   int nx, ny, nz;
2023-09-17T04:46:20,781         |               ^~
2023-09-17T04:46:22,657   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipmx/extensions/pmx -I/usr/include/python3.11 -c pmx/extensions/pmx/init.c -o build/temp.linux-armv7l-cpython-311/pmx/extensions/pmx/init.o
2023-09-17T04:46:23,039   pmx/extensions/pmx/init.c: In function ‘init_pmx’:
2023-09-17T04:46:23,040   pmx/extensions/pmx/init.c:66:10: warning: implicit declaration of function ‘Py_InitModule3’ [-Wimplicit-function-declaration]
2023-09-17T04:46:23,041      66 |   (void) Py_InitModule3("_pmx",pmx_methods,NULL);
2023-09-17T04:46:23,042         |          ^~~~~~~~~~~~~~
2023-09-17T04:46:23,078   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipmx/extensions/pmx -I/usr/include/python3.11 -c pmx/extensions/pmx/wrap_Geometry.c -o build/temp.linux-armv7l-cpython-311/pmx/extensions/pmx/wrap_Geometry.o
2023-09-17T04:46:23,472   pmx/extensions/pmx/wrap_Geometry.c: In function ‘wrap_box_to_cryst1’:
2023-09-17T04:46:23,473   pmx/extensions/pmx/wrap_Geometry.c:288:10: warning: implicit declaration of function ‘PyString_FromString’; did you mean ‘PyLong_FromString’? [-Wimplicit-function-declaration]
2023-09-17T04:46:23,473     288 |   return PyString_FromString( line );
2023-09-17T04:46:23,474         |          ^~~~~~~~~~~~~~~~~~~
2023-09-17T04:46:23,475         |          PyLong_FromString
2023-09-17T04:46:23,475   pmx/extensions/pmx/wrap_Geometry.c:288:10: warning: returning ‘int’ from a function with return type ‘PyObject *’ {aka ‘struct _object *’} makes pointer from integer without a cast [-Wint-conversion]
2023-09-17T04:46:23,476     288 |   return PyString_FromString( line );
2023-09-17T04:46:23,476         |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-17T04:46:23,490   pmx/extensions/pmx/wrap_Geometry.c: In function ‘get_bond_contribution’:
2023-09-17T04:46:23,491   pmx/extensions/pmx/wrap_Geometry.c:300:16: warning: implicit declaration of function ‘PyString_AsString’ [-Wimplicit-function-declaration]
2023-09-17T04:46:23,491     300 |   char *elem = PyString_AsString( PyObject_GetAttrString(atom, "symbol") );
2023-09-17T04:46:23,492         |                ^~~~~~~~~~~~~~~~~
2023-09-17T04:46:23,493   pmx/extensions/pmx/wrap_Geometry.c:300:16: warning: initialization of ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2023-09-17T04:46:23,502   pmx/extensions/pmx/wrap_Geometry.c: In function ‘atom_ids_from_py_atomlist’:
2023-09-17T04:46:23,503   pmx/extensions/pmx/wrap_Geometry.c:320:20: warning: implicit declaration of function ‘PyInt_AsLong’; did you mean ‘PyLong_AsLong’? [-Wimplicit-function-declaration]
2023-09-17T04:46:23,504     320 |     int atom_id =  PyInt_AsLong (PyObject_GetAttrString(atom,"id") ) - 1;
2023-09-17T04:46:23,504         |                    ^~~~~~~~~~~~
2023-09-17T04:46:23,505         |                    PyLong_AsLong
2023-09-17T04:46:24,676   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pmx/extensions/pmx/Energy.o build/temp.linux-armv7l-cpython-311/pmx/extensions/pmx/Geometry.o build/temp.linux-armv7l-cpython-311/pmx/extensions/pmx/init.o build/temp.linux-armv7l-cpython-311/pmx/extensions/pmx/wrap_Geometry.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/pmx/_pmx.cpython-311-arm-linux-gnueabihf.so
2023-09-17T04:46:24,800   building 'pmx._xdrio' extension
2023-09-17T04:46:24,802   creating build/temp.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-17T04:46:24,802   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipmx/extensions/xdr -I/usr/include/python3.11 -c pmx/extensions/xdr/xdrfile.c -o build/temp.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile.o
2023-09-17T04:46:24,843   pmx/extensions/xdr/xdrfile.c:5:2: warning: "/*" within comment [-Wcomment]
2023-09-17T04:46:24,843       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-17T04:46:24,844         |
2023-09-17T04:46:24,936   In file included from pmx/extensions/xdr/xdrfile.c:60:
2023-09-17T04:46:24,937   pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-17T04:46:24,937       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-17T04:46:24,938         |
2023-09-17T04:46:24,945   pmx/extensions/xdr/xdrfile.c: In function ‘sizeofint’:
2023-09-17T04:46:24,946   pmx/extensions/xdr/xdrfile.c:499:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-17T04:46:24,946     499 |     while (size >= num && num_of_bits < 32)
2023-09-17T04:46:24,947         |                 ^~
2023-09-17T04:46:24,948   pmx/extensions/xdr/xdrfile.c: In function ‘sizeofints’:
2023-09-17T04:46:24,948   pmx/extensions/xdr/xdrfile.c:545:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:24,949     545 |     while (bytes[num_of_bytes] >= num)
2023-09-17T04:46:24,950         |                                ^~
2023-09-17T04:46:24,950   pmx/extensions/xdr/xdrfile.c: In function ‘encodeints’:
2023-09-17T04:46:24,951   pmx/extensions/xdr/xdrfile.c:654:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-17T04:46:24,951     654 |     if (num_of_bits >= num_of_bytes * 8)
2023-09-17T04:46:24,952         |                     ^~
2023-09-17T04:46:24,952   pmx/extensions/xdr/xdrfile.c:656:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-17T04:46:24,953     656 |                 for (i = 0; i < num_of_bytes; i++)
2023-09-17T04:46:24,954         |                               ^
2023-09-17T04:46:24,954   pmx/extensions/xdr/xdrfile.c:664:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-17T04:46:24,955     664 |                 for (i = 0; i < num_of_bytes-1; i++)
2023-09-17T04:46:24,955         |                               ^
2023-09-17T04:46:24,956   pmx/extensions/xdr/xdrfile.c: In function ‘decodebits’:
2023-09-17T04:46:24,956   pmx/extensions/xdr/xdrfile.c:704:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:24,957     704 |                 if (lastbits < num_of_bits)
2023-09-17T04:46:24,958         |                              ^
2023-09-17T04:46:24,958   pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_float’:
2023-09-17T04:46:24,959   pmx/extensions/xdr/xdrfile.c:814:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:24,959     814 |         if(size3>xfp->buf1size)
2023-09-17T04:46:24,960         |                 ^
2023-09-17T04:46:24,960   pmx/extensions/xdr/xdrfile.c:866:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:24,961     866 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-17T04:46:24,961         |                          ^
2023-09-17T04:46:24,962   pmx/extensions/xdr/xdrfile.c:866:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-17T04:46:24,962     866 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-17T04:46:24,963         |                                            ^~~
2023-09-17T04:46:24,964   pmx/extensions/xdr/xdrfile.c:792:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-09-17T04:46:24,965     792 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-09-17T04:46:24,965         |                                ^~~~~~
2023-09-17T04:46:24,965   pmx/extensions/xdr/xdrfile.c:789:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-09-17T04:46:24,966     789 |         int smallidx, minidx, maxidx;
2023-09-17T04:46:24,966         |                       ^~~~~~
2023-09-17T04:46:24,967   pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2023-09-17T04:46:24,968   pmx/extensions/xdr/xdrfile.c:1010:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:24,968    1010 |         if(size3>xfp->buf1size)
2023-09-17T04:46:24,969         |                 ^
2023-09-17T04:46:24,973   pmx/extensions/xdr/xdrfile.c:1133:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-17T04:46:24,974    1133 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-09-17T04:46:24,975         |                         ^
2023-09-17T04:46:24,975   pmx/extensions/xdr/xdrfile.c:1139:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:24,976    1139 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-17T04:46:24,976         |                          ^
2023-09-17T04:46:24,977   pmx/extensions/xdr/xdrfile.c:1139:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-17T04:46:24,977    1139 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-17T04:46:24,978         |                                            ^~~
2023-09-17T04:46:24,981   pmx/extensions/xdr/xdrfile.c:1271:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-17T04:46:24,982    1271 |         if(tmp==(unsigned int)buf2[0])
2023-09-17T04:46:24,982         |               ^~
2023-09-17T04:46:24,983   pmx/extensions/xdr/xdrfile.c:999:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-09-17T04:46:24,983     999 |         int errval=1;
2023-09-17T04:46:24,984         |             ^~~~~~
2023-09-17T04:46:24,984   pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_double’:
2023-09-17T04:46:24,985   pmx/extensions/xdr/xdrfile.c:1311:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:24,986    1311 |         if(size3>xfp->buf1size)
2023-09-17T04:46:24,987         |                 ^
2023-09-17T04:46:24,989   pmx/extensions/xdr/xdrfile.c:1366:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:24,990    1366 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-17T04:46:24,990         |                          ^
2023-09-17T04:46:24,991   pmx/extensions/xdr/xdrfile.c:1366:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-17T04:46:24,991    1366 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-17T04:46:24,992         |                                            ^~~
2023-09-17T04:46:24,995   pmx/extensions/xdr/xdrfile.c:1288:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-09-17T04:46:24,996    1288 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-09-17T04:46:24,996         |                                ^~~~~~
2023-09-17T04:46:24,996   pmx/extensions/xdr/xdrfile.c:1285:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-09-17T04:46:24,997    1285 |         int smallidx, minidx, maxidx;
2023-09-17T04:46:24,997         |                       ^~~~~~
2023-09-17T04:46:24,998   pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2023-09-17T04:46:24,999   pmx/extensions/xdr/xdrfile.c:1502:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:25,000    1502 |         if(size3>xfp->buf1size) {
2023-09-17T04:46:25,000         |                 ^
2023-09-17T04:46:25,007   pmx/extensions/xdr/xdrfile.c:1617:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-17T04:46:25,008    1617 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-09-17T04:46:25,008         |                         ^
2023-09-17T04:46:25,009   pmx/extensions/xdr/xdrfile.c:1622:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-17T04:46:25,010    1622 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-17T04:46:25,010         |                          ^
2023-09-17T04:46:25,012   pmx/extensions/xdr/xdrfile.c:1622:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-17T04:46:25,012    1622 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-17T04:46:25,013         |                                            ^~~
2023-09-17T04:46:25,019   pmx/extensions/xdr/xdrfile.c:1732:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-17T04:46:25,020    1732 |         if(tmp==(unsigned int)buf2[0])
2023-09-17T04:46:25,021         |               ^~
2023-09-17T04:46:25,022   pmx/extensions/xdr/xdrfile.c:1492:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-09-17T04:46:25,023    1492 |         int errval=1;
2023-09-17T04:46:25,023         |             ^~~~~~
2023-09-17T04:46:27,605   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipmx/extensions/xdr -I/usr/include/python3.11 -c pmx/extensions/xdr/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_trr.o
2023-09-17T04:46:27,646   pmx/extensions/xdr/xdrfile_trr.c:5:2: warning: "/*" within comment [-Wcomment]
2023-09-17T04:46:27,646       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-17T04:46:27,647         |
2023-09-17T04:46:27,685   In file included from pmx/extensions/xdr/xdrfile_trr.c:41:
2023-09-17T04:46:27,686   pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-17T04:46:27,687       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-17T04:46:27,687         |
2023-09-17T04:46:27,688   In file included from pmx/extensions/xdr/xdrfile_trr.c:42:
2023-09-17T04:46:27,688   pmx/extensions/xdr/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-17T04:46:27,689       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-17T04:46:27,689         |
2023-09-17T04:46:27,690   pmx/extensions/xdr/xdrfile_trr.c: In function ‘do_trnheader’:
2023-09-17T04:46:27,690   pmx/extensions/xdr/xdrfile_trr.c:108:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-17T04:46:27,691     108 |         if (slen != strlen(version)+1)
2023-09-17T04:46:27,691         |                  ^~
2023-09-17T04:46:27,692   pmx/extensions/xdr/xdrfile_trr.c:118:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-17T04:46:27,692     118 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2023-09-17T04:46:27,693         |                                              ^~
2023-09-17T04:46:28,364   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipmx/extensions/xdr -I/usr/include/python3.11 -c pmx/extensions/xdr/xdrfile_xtc.c -o build/temp.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_xtc.o
2023-09-17T04:46:28,436   In file included from pmx/extensions/xdr/xdrfile_xtc.c:31:
2023-09-17T04:46:28,437   pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-17T04:46:28,438       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-17T04:46:28,438         |
2023-09-17T04:46:28,439   In file included from pmx/extensions/xdr/xdrfile_xtc.c:32:
2023-09-17T04:46:28,439   pmx/extensions/xdr/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-17T04:46:28,440       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-17T04:46:28,441         |
2023-09-17T04:46:28,441   pmx/extensions/xdr/xdrfile_xtc.c: In function ‘xtc_coord’:
2023-09-17T04:46:28,442   pmx/extensions/xdr/xdrfile_xtc.c:66:15: warning: unused variable ‘j’ [-Wunused-variable]
2023-09-17T04:46:28,443      66 |         int i,j,result;
2023-09-17T04:46:28,443         |               ^
2023-09-17T04:46:28,444   pmx/extensions/xdr/xdrfile_xtc.c:66:13: warning: unused variable ‘i’ [-Wunused-variable]
2023-09-17T04:46:28,444      66 |         int i,j,result;
2023-09-17T04:46:28,445         |             ^
2023-09-17T04:46:28,557   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile.o build/temp.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_trr.o build/temp.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_xtc.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so
2023-09-17T04:46:28,689   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-17T04:46:28,689   !!

2023-09-17T04:46:28,690           ********************************************************************************
2023-09-17T04:46:28,691           Please avoid running ``setup.py`` directly.
2023-09-17T04:46:28,691           Instead, use pypa/build, pypa/installer or other
2023-09-17T04:46:28,692           standards-based tools.

2023-09-17T04:46:28,693           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-17T04:46:28,693           ********************************************************************************

2023-09-17T04:46:28,695   !!
2023-09-17T04:46:28,695     self.initialize_options()
2023-09-17T04:46:28,716   installing to build/bdist.linux-armv7l/wheel
2023-09-17T04:46:28,716   running install
2023-09-17T04:46:28,740   running install_lib
2023-09-17T04:46:28,765   creating build/bdist.linux-armv7l
2023-09-17T04:46:28,765   creating build/bdist.linux-armv7l/wheel
2023-09-17T04:46:28,767   creating build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:28,769   creating build/bdist.linux-armv7l/wheel/pmx/data
2023-09-17T04:46:28,770   copying build/lib.linux-armv7l-cpython-311/pmx/data/ffamber99sb.rtp -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-17T04:46:28,778   copying build/lib.linux-armv7l-cpython-311/pmx/data/bp.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-17T04:46:28,783   copying build/lib.linux-armv7l-cpython-311/pmx/data/bp_charmm.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-17T04:46:28,789   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna
2023-09-17T04:46:28,791   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,792   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,797   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,800   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,802   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,804   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,806   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,808   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,809   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,812   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,814   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,816   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,820   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,822   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,824   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,825   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,828   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,830   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,837   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,839   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,841   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,843   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,845   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,846   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,848   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,851   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,853   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,856   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,857   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,860   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,862   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,882   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,883   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,885   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,887   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,889   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,891   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,914   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,916   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,918   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,919   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:28,971   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/residuetypes.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna
2023-09-17T04:46:28,974   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/vdwradii.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna
2023-09-17T04:46:28,975   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/atommass.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna
2023-09-17T04:46:28,977   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/spc216.gro -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna
2023-09-17T04:46:28,981   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:28,982   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:28,984   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:28,988   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,007   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,009   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,011   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,012   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/dna.rtp_backup -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,015   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,017   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,019   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,021   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,022   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,024   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,034   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,063   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,066   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,068   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,069   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,087   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/nbfix.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,088   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,090   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,092   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,096   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,098   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-17T04:46:29,100   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/xlateat.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna
2023-09-17T04:46:29,102   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/elements.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna
2023-09-17T04:46:29,104   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/specbond.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna
2023-09-17T04:46:29,106   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,107   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,111   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,114   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,116   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,118   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,120   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,121   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,123   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,125   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,128   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,129   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,133   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,135   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,136   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,138   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,141   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,142   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,149   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,151   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,154   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,155   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,157   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,159   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,161   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,163   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,165   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,167   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,170   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,171   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,174   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,176   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,194   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,196   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,198   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,200   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,201   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,203   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,222   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,224   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,226   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,229   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-17T04:46:29,274   copying build/lib.linux-armv7l-cpython-311/pmx/data/rna.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-17T04:46:29,278   copying build/lib.linux-armv7l-cpython-311/pmx/data/bbdep.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-17T04:46:29,588   copying build/lib.linux-armv7l-cpython-311/pmx/data/blosum62_new.mat -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-17T04:46:29,590   copying build/lib.linux-armv7l-cpython-311/pmx/data/ffamber99sbbon.itp -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-17T04:46:29,593   copying build/lib.linux-armv7l-cpython-311/pmx/data/ffamber99sbnb.itp -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-17T04:46:29,596   copying build/lib.linux-armv7l-cpython-311/pmx/data/bp_amber.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-17T04:46:29,601   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-17T04:46:29,603   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,604   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,607   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,609   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,611   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,613   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,615   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,617   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,621   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,623   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,625   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,627   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,630   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,633   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,635   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,637   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,639   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,641   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,644   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,647   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,649   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,652   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,654   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,656   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,678   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,680   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,682   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,683   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,685   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,687   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,708   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,711   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,713   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,714   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-17T04:46:29,767   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/residuetypes.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-17T04:46:29,769   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/vdwradii.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-17T04:46:29,772   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,773   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,776   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,777   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,779   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,781   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,783   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,784   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/Makefile.am -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,786   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,790   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,792   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,793   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,795   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,798   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/dummies.atp.save -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,800   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,802   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,804   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,805   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,807   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,809   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,811   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,814   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,816   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/list.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,818   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,821   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,823   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/dummies_nonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,825   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,827   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,828   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,831   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,832   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,834   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/Makefile.in -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,836   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,838   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,857   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,859   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,861   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,863   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-17T04:46:29,908   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/atommass.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-17T04:46:29,910   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/spc216.gro -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-17T04:46:29,914   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,914   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,916   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/methanol.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,918   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,920   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,922   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,924   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,925   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,928   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,930   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,934   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/backup_atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,936   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,938   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/ethanol.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,940   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,941   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,947   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,949   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,951   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,952   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,955   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/1propanol.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,956   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,958   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/dummies.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,961   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,963   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:29,999   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:30,002   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:30,004   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/atomname2type.n2t -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:30,006   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/oplsaamut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2023-09-17T04:46:30,054   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,055   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,057   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,058   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,060   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,062   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,064   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/tips3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,066   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,067   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,070   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,072   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,075   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,077   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/ffnanonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,080   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,081   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,085   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/ffnabonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,088   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/watermodels.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,090   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,092   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,093   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,096   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,098   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/gromacs_c27_ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,100   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,102   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,104   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,124   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,126   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,128   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,131   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-17T04:46:30,177   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/xlateat.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-17T04:46:30,179   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/elements.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-17T04:46:30,182   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/specbond.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-17T04:46:30,186   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,187   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,190   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,193   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,196   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/dna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,198   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,202   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,204   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,207   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/tips3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,210   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/lipids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,212   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,214   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,219   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,221   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,224   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,227   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,235   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/lipids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,240   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,242   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,245   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,248   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,251   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/ffnanonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,255   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,259   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,261   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,267   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,269   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/ffnabonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,273   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,275   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,278   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,281   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/rna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,283   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,285   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/dna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,286   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,288   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,290   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/rna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,291   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,293   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,312   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,315   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,317   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,318   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-17T04:46:30,363   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:30,364   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:30,365   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/ffamber99sb.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:30,391   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:30,393   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/tip3p.gro -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:30,397   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/ffamber99sb-n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:30,398   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/ffamber99sb-c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:30,400   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/ffamber99sb.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:30,489   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/ffamber99sb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:30,491   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/ffamber99sb.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:30,494   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/ffamber99sbbon.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:30,497   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/ffamber99sb.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:30,499   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/ffamber99sbnb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:30,502   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-17T04:46:30,505   copying build/lib.linux-armv7l-cpython-311/pmx/_version.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,507   copying build/lib.linux-armv7l-cpython-311/pmx/histogram.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,510   creating build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:30,511   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:30,513   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/md_setup.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:30,516   creating build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2023-09-17T04:46:30,517   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands/build_mst_graph.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2023-09-17T04:46:30,521   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands/atoms_to_morph.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2023-09-17T04:46:30,525   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands/one_ff_file.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2023-09-17T04:46:30,527   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands/atoms_to_morph_rdkit2018.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2023-09-17T04:46:30,532   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands/make_hybrid.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2023-09-17T04:46:30,536   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/generate_hybrid_residue.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:30,539   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/set_gmxlib.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:30,542   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/generate_hybrid_topology.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:30,545   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/prepare_crooks_runs.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:30,547   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/make_amber.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:30,550   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/analyze_dhdl.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:30,553   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/cli.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:30,555   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/mutate.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-17T04:46:30,558   copying build/lib.linux-armv7l-cpython-311/pmx/atomselection.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,561   copying build/lib.linux-armv7l-cpython-311/pmx/library.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,566   copying build/lib.linux-armv7l-cpython-311/pmx/estimators.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,569   copying build/lib.linux-armv7l-cpython-311/pmx/__init__.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,571   copying build/lib.linux-armv7l-cpython-311/pmx/options.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,574   copying build/lib.linux-armv7l-cpython-311/pmx/futil.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,576   copying build/lib.linux-armv7l-cpython-311/pmx/ndx.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,579   copying build/lib.linux-armv7l-cpython-311/pmx/model.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,582   copying build/lib.linux-armv7l-cpython-311/pmx/odict.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,585   copying build/lib.linux-armv7l-cpython-311/pmx/ffparser.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,588   copying build/lib.linux-armv7l-cpython-311/pmx/xtc.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,589   copying build/lib.linux-armv7l-cpython-311/pmx/forcefield2.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,593   copying build/lib.linux-armv7l-cpython-311/pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,597   copying build/lib.linux-armv7l-cpython-311/pmx/parser.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,600   copying build/lib.linux-armv7l-cpython-311/pmx/cpp.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,602   copying build/lib.linux-armv7l-cpython-311/pmx/builder.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,605   copying build/lib.linux-armv7l-cpython-311/pmx/xdrfile.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,607   copying build/lib.linux-armv7l-cpython-311/pmx/geometry.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,610   copying build/lib.linux-armv7l-cpython-311/pmx/tCNC.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,612   copying build/lib.linux-armv7l-cpython-311/pmx/atom.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,615   creating build/bdist.linux-armv7l/wheel/pmx/extensions
2023-09-17T04:46:30,617   creating build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-17T04:46:30,618   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/pmx.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-17T04:46:30,620   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Geometry.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-17T04:46:30,623   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-17T04:46:30,625   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Energy.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-17T04:46:30,628   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/init.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-17T04:46:30,630   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/cpp_test.cpp -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-17T04:46:30,632   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/wrap_Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-17T04:46:30,635   creating build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-17T04:46:30,636   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_c_test.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-17T04:46:30,638   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-17T04:46:30,640   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-17T04:46:30,643   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-17T04:46:30,646   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-17T04:46:30,648   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-17T04:46:30,650   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/trr2xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-17T04:46:30,653   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-17T04:46:30,656   copying build/lib.linux-armv7l-cpython-311/pmx/chain.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,658   copying build/lib.linux-armv7l-cpython-311/pmx/mutdb.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,661   copying build/lib.linux-armv7l-cpython-311/pmx/rotamer.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,663   copying build/lib.linux-armv7l-cpython-311/pmx/molecule.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,666   copying build/lib.linux-armv7l-cpython-311/pmx/_pmx.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,671   copying build/lib.linux-armv7l-cpython-311/pmx/forcefield.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-17T04:46:30,675   running install_egg_info
2023-09-17T04:46:30,707   Copying pmx_satumut.egg-info to build/bdist.linux-armv7l/wheel/pmx_satumut-2.0.3-py3.11.egg-info
2023-09-17T04:46:30,721   running install_scripts
2023-09-17T04:46:30,775   creating build/bdist.linux-armv7l/wheel/pmx_satumut-2.0.3.dist-info/WHEEL
2023-09-17T04:46:30,778   creating '/tmp/pip-wheel-vy9j6pgy/pmx_satumut-2.0.3-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-17T04:46:30,781   adding 'pmx/__init__.py'
2023-09-17T04:46:30,816   adding 'pmx/_pmx.cpython-311-arm-linux-gnueabihf.so'
2023-09-17T04:46:30,819   adding 'pmx/_version.py'
2023-09-17T04:46:30,841   adding 'pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so'
2023-09-17T04:46:30,844   adding 'pmx/atom.py'
2023-09-17T04:46:30,846   adding 'pmx/atomselection.py'
2023-09-17T04:46:30,849   adding 'pmx/builder.py'
2023-09-17T04:46:30,852   adding 'pmx/chain.py'
2023-09-17T04:46:30,855   adding 'pmx/cpp.py'
2023-09-17T04:46:30,858   adding 'pmx/estimators.py'
2023-09-17T04:46:30,862   adding 'pmx/ffparser.py'
2023-09-17T04:46:30,869   adding 'pmx/forcefield.py'
2023-09-17T04:46:30,875   adding 'pmx/forcefield2.py'
2023-09-17T04:46:30,877   adding 'pmx/futil.py'
2023-09-17T04:46:30,879   adding 'pmx/geometry.py'
2023-09-17T04:46:30,880   adding 'pmx/histogram.py'
2023-09-17T04:46:30,888   adding 'pmx/library.py'
2023-09-17T04:46:30,892   adding 'pmx/model.py'
2023-09-17T04:46:30,896   adding 'pmx/molecule.py'
2023-09-17T04:46:30,897   adding 'pmx/mutdb.py'
2023-09-17T04:46:30,899   adding 'pmx/ndx.py'
2023-09-17T04:46:30,904   adding 'pmx/odict.py'
2023-09-17T04:46:30,906   adding 'pmx/options.py'
2023-09-17T04:46:30,908   adding 'pmx/parser.py'
2023-09-17T04:46:30,910   adding 'pmx/rotamer.py'
2023-09-17T04:46:30,912   adding 'pmx/tCNC.py'
2023-09-17T04:46:30,913   adding 'pmx/xdrfile.py'
2023-09-17T04:46:30,915   adding 'pmx/xtc.py'
2023-09-17T04:46:32,742   adding 'pmx/data/bbdep.pkl'
2023-09-17T04:46:33,085   adding 'pmx/data/blosum62_new.mat'
2023-09-17T04:46:33,448   adding 'pmx/data/bp.pkl'
2023-09-17T04:46:33,727   adding 'pmx/data/bp_amber.pkl'
2023-09-17T04:46:34,116   adding 'pmx/data/bp_charmm.pkl'
2023-09-17T04:46:34,376   adding 'pmx/data/ffamber99sb.rtp'
2023-09-17T04:46:34,388   adding 'pmx/data/ffamber99sbbon.itp'
2023-09-17T04:46:34,391   adding 'pmx/data/ffamber99sbnb.itp'
2023-09-17T04:46:34,405   adding 'pmx/data/rna.pkl'
2023-09-17T04:46:34,408   adding 'pmx/data/mutff/ffamber99sb-c.tdb'
2023-09-17T04:46:34,410   adding 'pmx/data/mutff/ffamber99sb-n.tdb'
2023-09-17T04:46:34,412   adding 'pmx/data/mutff/ffamber99sb.atp'
2023-09-17T04:46:34,415   adding 'pmx/data/mutff/ffamber99sb.hdb'
2023-09-17T04:46:34,417   adding 'pmx/data/mutff/ffamber99sb.itp'
2023-09-17T04:46:34,744   adding 'pmx/data/mutff/ffamber99sb.mtp'
2023-09-17T04:46:34,851   adding 'pmx/data/mutff/ffamber99sb.rtp'
2023-09-17T04:46:34,867   adding 'pmx/data/mutff/ffamber99sbbon.itp'
2023-09-17T04:46:34,870   adding 'pmx/data/mutff/ffamber99sbnb.itp'
2023-09-17T04:46:34,871   adding 'pmx/data/mutff/ions.itp'
2023-09-17T04:46:34,872   adding 'pmx/data/mutff/spce.itp'
2023-09-17T04:46:34,901   adding 'pmx/data/mutff/tip3p.gro'
2023-09-17T04:46:34,903   adding 'pmx/data/mutff/tip3p.itp'
2023-09-17T04:46:34,905   adding 'pmx/data/mutff45/atommass.dat'
2023-09-17T04:46:34,906   adding 'pmx/data/mutff45/elements.dat'
2023-09-17T04:46:34,908   adding 'pmx/data/mutff45/residuetypes.dat'
2023-09-17T04:46:34,914   adding 'pmx/data/mutff45/spc216.gro'
2023-09-17T04:46:34,916   adding 'pmx/data/mutff45/specbond.dat'
2023-09-17T04:46:34,917   adding 'pmx/data/mutff45/vdwradii.dat'
2023-09-17T04:46:34,919   adding 'pmx/data/mutff45/xlateat.dat'
2023-09-17T04:46:34,921   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.arn'
2023-09-17T04:46:34,922   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb'
2023-09-17T04:46:34,924   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.hdb'
2023-09-17T04:46:34,925   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb'
2023-09-17T04:46:34,926   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.r2b'
2023-09-17T04:46:34,935   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.rtp'
2023-09-17T04:46:34,937   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.vsd'
2023-09-17T04:46:34,939   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/atomtypes.atp'
2023-09-17T04:46:35,000   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/backup_mutres'
2023-09-17T04:46:35,011   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.arn'
2023-09-17T04:46:35,012   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.hdb'
2023-09-17T04:46:35,013   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.r2b'
2023-09-17T04:46:35,015   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.rtp'
2023-09-17T04:46:35,019   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffbonded.itp'
2023-09-17T04:46:35,021   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffnonbonded.itp'
2023-09-17T04:46:35,022   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.doc'
2023-09-17T04:46:35,024   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.itp'
2023-09-17T04:46:35,025   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/gbsa.itp'
2023-09-17T04:46:35,026   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ions.itp'
2023-09-17T04:46:35,181   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.mtp'
2023-09-17T04:46:35,263   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.rtp'
2023-09-17T04:46:35,273   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.arn'
2023-09-17T04:46:35,275   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.hdb'
2023-09-17T04:46:35,276   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.r2b'
2023-09-17T04:46:35,278   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.rtp'
2023-09-17T04:46:35,279   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spc.itp'
2023-09-17T04:46:35,281   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spce.itp'
2023-09-17T04:46:35,282   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip3p.itp'
2023-09-17T04:46:35,283   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4p.itp'
2023-09-17T04:46:35,284   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4pew.itp'
2023-09-17T04:46:35,285   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip5p.itp'
2023-09-17T04:46:35,286   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/urea.itp'
2023-09-17T04:46:35,288   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/watermodels.dat'
2023-09-17T04:46:35,290   adding 'pmx/data/mutff45/amber99sbmut.ff/Makefile.am'
2023-09-17T04:46:35,292   adding 'pmx/data/mutff45/amber99sbmut.ff/Makefile.in'
2023-09-17T04:46:35,293   adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.arn'
2023-09-17T04:46:35,294   adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.c.tdb'
2023-09-17T04:46:35,296   adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.hdb'
2023-09-17T04:46:35,297   adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.n.tdb'
2023-09-17T04:46:35,298   adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.r2b'
2023-09-17T04:46:35,304   adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.rtp'
2023-09-17T04:46:35,306   adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.vsd'
2023-09-17T04:46:35,308   adding 'pmx/data/mutff45/amber99sbmut.ff/atomtypes.atp'
2023-09-17T04:46:35,309   adding 'pmx/data/mutff45/amber99sbmut.ff/dna.arn'
2023-09-17T04:46:35,310   adding 'pmx/data/mutff45/amber99sbmut.ff/dna.hdb'
2023-09-17T04:46:35,311   adding 'pmx/data/mutff45/amber99sbmut.ff/dna.r2b'
2023-09-17T04:46:35,314   adding 'pmx/data/mutff45/amber99sbmut.ff/dna.rtp'
2023-09-17T04:46:35,315   adding 'pmx/data/mutff45/amber99sbmut.ff/dummies.atp.save'
2023-09-17T04:46:35,316   adding 'pmx/data/mutff45/amber99sbmut.ff/dummies_nonbonded.itp'
2023-09-17T04:46:35,319   adding 'pmx/data/mutff45/amber99sbmut.ff/ffbonded.itp'
2023-09-17T04:46:35,321   adding 'pmx/data/mutff45/amber99sbmut.ff/ffnonbonded.itp'
2023-09-17T04:46:35,323   adding 'pmx/data/mutff45/amber99sbmut.ff/forcefield.doc'
2023-09-17T04:46:35,324   adding 'pmx/data/mutff45/amber99sbmut.ff/forcefield.itp'
2023-09-17T04:46:35,325   adding 'pmx/data/mutff45/amber99sbmut.ff/gbsa.itp'
2023-09-17T04:46:35,326   adding 'pmx/data/mutff45/amber99sbmut.ff/ions.itp'
2023-09-17T04:46:35,328   adding 'pmx/data/mutff45/amber99sbmut.ff/list.dat'
2023-09-17T04:46:35,474   adding 'pmx/data/mutff45/amber99sbmut.ff/mutres.mtp'
2023-09-17T04:46:35,549   adding 'pmx/data/mutff45/amber99sbmut.ff/mutres.rtp'
2023-09-17T04:46:35,559   adding 'pmx/data/mutff45/amber99sbmut.ff/rna.arn'
2023-09-17T04:46:35,560   adding 'pmx/data/mutff45/amber99sbmut.ff/rna.hdb'
2023-09-17T04:46:35,561   adding 'pmx/data/mutff45/amber99sbmut.ff/rna.r2b'
2023-09-17T04:46:35,564   adding 'pmx/data/mutff45/amber99sbmut.ff/rna.rtp'
2023-09-17T04:46:35,565   adding 'pmx/data/mutff45/amber99sbmut.ff/spc.itp'
2023-09-17T04:46:35,566   adding 'pmx/data/mutff45/amber99sbmut.ff/spce.itp'
2023-09-17T04:46:35,567   adding 'pmx/data/mutff45/amber99sbmut.ff/tip3p.itp'
2023-09-17T04:46:35,569   adding 'pmx/data/mutff45/amber99sbmut.ff/tip4p.itp'
2023-09-17T04:46:35,570   adding 'pmx/data/mutff45/amber99sbmut.ff/tip4pew.itp'
2023-09-17T04:46:35,571   adding 'pmx/data/mutff45/amber99sbmut.ff/tip5p.itp'
2023-09-17T04:46:35,573   adding 'pmx/data/mutff45/amber99sbmut.ff/urea.itp'
2023-09-17T04:46:35,574   adding 'pmx/data/mutff45/amber99sbmut.ff/watermodels.dat'
2023-09-17T04:46:35,576   adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.arn'
2023-09-17T04:46:35,577   adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.c.tdb'
2023-09-17T04:46:35,579   adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.hdb'
2023-09-17T04:46:35,580   adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.n.tdb'
2023-09-17T04:46:35,581   adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.r2b'
2023-09-17T04:46:35,585   adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.rtp'
2023-09-17T04:46:35,587   adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.vsd'
2023-09-17T04:46:35,588   adding 'pmx/data/mutff45/charmm22starmut.ff/atomtypes.atp'
2023-09-17T04:46:35,593   adding 'pmx/data/mutff45/charmm22starmut.ff/cmap.itp'
2023-09-17T04:46:35,594   adding 'pmx/data/mutff45/charmm22starmut.ff/dna.arn'
2023-09-17T04:46:35,595   adding 'pmx/data/mutff45/charmm22starmut.ff/dna.c.tdb'
2023-09-17T04:46:35,597   adding 'pmx/data/mutff45/charmm22starmut.ff/dna.hdb'
2023-09-17T04:46:35,598   adding 'pmx/data/mutff45/charmm22starmut.ff/dna.n.tdb'
2023-09-17T04:46:35,599   adding 'pmx/data/mutff45/charmm22starmut.ff/dna.rtp'
2023-09-17T04:46:35,607   adding 'pmx/data/mutff45/charmm22starmut.ff/ffbonded.itp'
2023-09-17T04:46:35,614   adding 'pmx/data/mutff45/charmm22starmut.ff/ffnabonded.itp'
2023-09-17T04:46:35,618   adding 'pmx/data/mutff45/charmm22starmut.ff/ffnanonbonded.itp'
2023-09-17T04:46:35,630   adding 'pmx/data/mutff45/charmm22starmut.ff/ffnonbonded.itp'
2023-09-17T04:46:35,633   adding 'pmx/data/mutff45/charmm22starmut.ff/forcefield.doc'
2023-09-17T04:46:35,634   adding 'pmx/data/mutff45/charmm22starmut.ff/forcefield.itp'
2023-09-17T04:46:35,635   adding 'pmx/data/mutff45/charmm22starmut.ff/gb.itp'
2023-09-17T04:46:35,636   adding 'pmx/data/mutff45/charmm22starmut.ff/ions.itp'
2023-09-17T04:46:35,637   adding 'pmx/data/mutff45/charmm22starmut.ff/lipids.hdb'
2023-09-17T04:46:35,641   adding 'pmx/data/mutff45/charmm22starmut.ff/lipids.rtp'
2023-09-17T04:46:35,643   adding 'pmx/data/mutff45/charmm22starmut.ff/mutres.arn'
2023-09-17T04:46:35,777   adding 'pmx/data/mutff45/charmm22starmut.ff/mutres.mtp'
2023-09-17T04:46:35,851   adding 'pmx/data/mutff45/charmm22starmut.ff/mutres.rtp'
2023-09-17T04:46:35,861   adding 'pmx/data/mutff45/charmm22starmut.ff/rna.arn'
2023-09-17T04:46:35,862   adding 'pmx/data/mutff45/charmm22starmut.ff/rna.c.tdb'
2023-09-17T04:46:35,863   adding 'pmx/data/mutff45/charmm22starmut.ff/rna.hdb'
2023-09-17T04:46:35,865   adding 'pmx/data/mutff45/charmm22starmut.ff/rna.n.tdb'
2023-09-17T04:46:35,866   adding 'pmx/data/mutff45/charmm22starmut.ff/rna.r2b'
2023-09-17T04:46:35,868   adding 'pmx/data/mutff45/charmm22starmut.ff/rna.rtp'
2023-09-17T04:46:35,869   adding 'pmx/data/mutff45/charmm22starmut.ff/spc.itp'
2023-09-17T04:46:35,871   adding 'pmx/data/mutff45/charmm22starmut.ff/spce.itp'
2023-09-17T04:46:35,872   adding 'pmx/data/mutff45/charmm22starmut.ff/tip3p.itp'
2023-09-17T04:46:35,873   adding 'pmx/data/mutff45/charmm22starmut.ff/tip4p.itp'
2023-09-17T04:46:35,875   adding 'pmx/data/mutff45/charmm22starmut.ff/tip4pew.itp'
2023-09-17T04:46:35,877   adding 'pmx/data/mutff45/charmm22starmut.ff/tip5p.itp'
2023-09-17T04:46:35,878   adding 'pmx/data/mutff45/charmm22starmut.ff/tips3p.itp'
2023-09-17T04:46:35,879   adding 'pmx/data/mutff45/charmm22starmut.ff/watermodels.dat'
2023-09-17T04:46:35,881   adding 'pmx/data/mutff45/charmm36mut.ff/aminoacids.arn'
2023-09-17T04:46:35,882   adding 'pmx/data/mutff45/charmm36mut.ff/aminoacids.c.tdb'
2023-09-17T04:46:35,883   adding 'pmx/data/mutff45/charmm36mut.ff/aminoacids.hdb'
2023-09-17T04:46:35,885   adding 'pmx/data/mutff45/charmm36mut.ff/aminoacids.n.tdb'
2023-09-17T04:46:35,886   adding 'pmx/data/mutff45/charmm36mut.ff/aminoacids.r2b'
2023-09-17T04:46:35,889   adding 'pmx/data/mutff45/charmm36mut.ff/aminoacids.rtp'
2023-09-17T04:46:35,891   adding 'pmx/data/mutff45/charmm36mut.ff/aminoacids.vsd'
2023-09-17T04:46:35,892   adding 'pmx/data/mutff45/charmm36mut.ff/atomtypes.atp'
2023-09-17T04:46:35,897   adding 'pmx/data/mutff45/charmm36mut.ff/cmap.itp'
2023-09-17T04:46:35,904   adding 'pmx/data/mutff45/charmm36mut.ff/ffbonded.itp'
2023-09-17T04:46:35,910   adding 'pmx/data/mutff45/charmm36mut.ff/ffnabonded.itp'
2023-09-17T04:46:35,912   adding 'pmx/data/mutff45/charmm36mut.ff/ffnanonbonded.itp'
2023-09-17T04:46:35,918   adding 'pmx/data/mutff45/charmm36mut.ff/ffnonbonded.itp'
2023-09-17T04:46:35,919   adding 'pmx/data/mutff45/charmm36mut.ff/forcefield.doc'
2023-09-17T04:46:35,920   adding 'pmx/data/mutff45/charmm36mut.ff/forcefield.itp'
2023-09-17T04:46:35,921   adding 'pmx/data/mutff45/charmm36mut.ff/gb.itp'
2023-09-17T04:46:35,923   adding 'pmx/data/mutff45/charmm36mut.ff/gromacs_c27_ions.itp'
2023-09-17T04:46:35,924   adding 'pmx/data/mutff45/charmm36mut.ff/ions.itp'
2023-09-17T04:46:35,925   adding 'pmx/data/mutff45/charmm36mut.ff/mutres.arn'
2023-09-17T04:46:36,059   adding 'pmx/data/mutff45/charmm36mut.ff/mutres.mtp'
2023-09-17T04:46:36,133   adding 'pmx/data/mutff45/charmm36mut.ff/mutres.rtp'
2023-09-17T04:46:36,143   adding 'pmx/data/mutff45/charmm36mut.ff/spc.itp'
2023-09-17T04:46:36,144   adding 'pmx/data/mutff45/charmm36mut.ff/spce.itp'
2023-09-17T04:46:36,145   adding 'pmx/data/mutff45/charmm36mut.ff/tip3p.itp'
2023-09-17T04:46:36,146   adding 'pmx/data/mutff45/charmm36mut.ff/tip4p.itp'
2023-09-17T04:46:36,147   adding 'pmx/data/mutff45/charmm36mut.ff/tips3p.itp'
2023-09-17T04:46:36,148   adding 'pmx/data/mutff45/charmm36mut.ff/watermodels.dat'
2023-09-17T04:46:36,149   adding 'pmx/data/mutff45/charmm36mut.ff/watermodels.itp'
2023-09-17T04:46:36,152   adding 'pmx/data/mutff45/oplsaamut.ff/1propanol.itp'
2023-09-17T04:46:36,153   adding 'pmx/data/mutff45/oplsaamut.ff/aminoacids.c.tdb'
2023-09-17T04:46:36,154   adding 'pmx/data/mutff45/oplsaamut.ff/aminoacids.hdb'
2023-09-17T04:46:36,155   adding 'pmx/data/mutff45/oplsaamut.ff/aminoacids.n.tdb'
2023-09-17T04:46:36,156   adding 'pmx/data/mutff45/oplsaamut.ff/aminoacids.r2b'
2023-09-17T04:46:36,160   adding 'pmx/data/mutff45/oplsaamut.ff/aminoacids.rtp'
2023-09-17T04:46:36,162   adding 'pmx/data/mutff45/oplsaamut.ff/aminoacids.vsd'
2023-09-17T04:46:36,163   adding 'pmx/data/mutff45/oplsaamut.ff/atomname2type.n2t'
2023-09-17T04:46:36,168   adding 'pmx/data/mutff45/oplsaamut.ff/atomtypes.atp'
2023-09-17T04:46:36,173   adding 'pmx/data/mutff45/oplsaamut.ff/backup_atomtypes.atp'
2023-09-17T04:46:36,175   adding 'pmx/data/mutff45/oplsaamut.ff/dummies.dat'
2023-09-17T04:46:36,177   adding 'pmx/data/mutff45/oplsaamut.ff/ethanol.itp'
2023-09-17T04:46:36,194   adding 'pmx/data/mutff45/oplsaamut.ff/ffbonded.itp'
2023-09-17T04:46:36,202   adding 'pmx/data/mutff45/oplsaamut.ff/ffnonbonded.itp'
2023-09-17T04:46:36,204   adding 'pmx/data/mutff45/oplsaamut.ff/forcefield.doc'
2023-09-17T04:46:36,205   adding 'pmx/data/mutff45/oplsaamut.ff/forcefield.itp'
2023-09-17T04:46:36,207   adding 'pmx/data/mutff45/oplsaamut.ff/gbsa.itp'
2023-09-17T04:46:36,208   adding 'pmx/data/mutff45/oplsaamut.ff/ions.itp'
2023-09-17T04:46:36,209   adding 'pmx/data/mutff45/oplsaamut.ff/methanol.itp'
2023-09-17T04:46:36,356   adding 'pmx/data/mutff45/oplsaamut.ff/mutres.mtp'
2023-09-17T04:46:36,440   adding 'pmx/data/mutff45/oplsaamut.ff/mutres.rtp'
2023-09-17T04:46:36,451   adding 'pmx/data/mutff45/oplsaamut.ff/spc.itp'
2023-09-17T04:46:36,453   adding 'pmx/data/mutff45/oplsaamut.ff/spce.itp'
2023-09-17T04:46:36,454   adding 'pmx/data/mutff45/oplsaamut.ff/tip3p.itp'
2023-09-17T04:46:36,455   adding 'pmx/data/mutff45/oplsaamut.ff/tip4p.itp'
2023-09-17T04:46:36,456   adding 'pmx/data/mutff45/oplsaamut.ff/tip5p.itp'
2023-09-17T04:46:36,458   adding 'pmx/data/mutff45/oplsaamut.ff/watermodels.dat'
2023-09-17T04:46:36,460   adding 'pmx/data/mutff45dna/atommass.dat'
2023-09-17T04:46:36,461   adding 'pmx/data/mutff45dna/elements.dat'
2023-09-17T04:46:36,463   adding 'pmx/data/mutff45dna/residuetypes.dat'
2023-09-17T04:46:36,469   adding 'pmx/data/mutff45dna/spc216.gro'
2023-09-17T04:46:36,471   adding 'pmx/data/mutff45dna/specbond.dat'
2023-09-17T04:46:36,472   adding 'pmx/data/mutff45dna/vdwradii.dat'
2023-09-17T04:46:36,473   adding 'pmx/data/mutff45dna/xlateat.dat'
2023-09-17T04:46:36,477   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn'
2023-09-17T04:46:36,479   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup'
2023-09-17T04:46:36,480   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb'
2023-09-17T04:46:36,481   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb'
2023-09-17T04:46:36,482   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb'
2023-09-17T04:46:36,483   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b'
2023-09-17T04:46:36,491   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp'
2023-09-17T04:46:36,494   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd'
2023-09-17T04:46:36,495   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp'
2023-09-17T04:46:36,499   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp'
2023-09-17T04:46:36,560   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres'
2023-09-17T04:46:36,573   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp'
2023-09-17T04:46:36,575   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.arn'
2023-09-17T04:46:36,576   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb'
2023-09-17T04:46:36,577   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b'
2023-09-17T04:46:36,580   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp'
2023-09-17T04:46:36,582   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp'
2023-09-17T04:46:36,586   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp'
2023-09-17T04:46:36,588   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp'
2023-09-17T04:46:36,590   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc'
2023-09-17T04:46:36,591   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp'
2023-09-17T04:46:36,592   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp'
2023-09-17T04:46:36,593   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ions.itp'
2023-09-17T04:46:36,747   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp'
2023-09-17T04:46:36,829   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp'
2023-09-17T04:46:36,856   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp'
2023-09-17T04:46:36,867   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp'
2023-09-17T04:46:36,870   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp'
2023-09-17T04:46:36,873   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp'
2023-09-17T04:46:36,874   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.arn'
2023-09-17T04:46:36,876   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb'
2023-09-17T04:46:36,877   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b'
2023-09-17T04:46:36,880   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp'
2023-09-17T04:46:36,882   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spc.itp'
2023-09-17T04:46:36,883   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spce.itp'
2023-09-17T04:46:36,884   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp'
2023-09-17T04:46:36,886   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp'
2023-09-17T04:46:36,887   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp'
2023-09-17T04:46:36,889   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp'
2023-09-17T04:46:36,891   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/urea.itp'
2023-09-17T04:46:36,892   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat'
2023-09-17T04:46:36,895   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.arn'
2023-09-17T04:46:36,896   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb'
2023-09-17T04:46:36,898   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.hdb'
2023-09-17T04:46:36,899   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb'
2023-09-17T04:46:36,901   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.r2b'
2023-09-17T04:46:36,909   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.rtp'
2023-09-17T04:46:36,912   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.vsd'
2023-09-17T04:46:36,914   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/atomtypes.atp'
2023-09-17T04:46:36,918   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_ffbonded_for_ildn_test.itp'
2023-09-17T04:46:36,979   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_mutres'
2023-09-17T04:46:36,994   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/correct_ffbonded.itp'
2023-09-17T04:46:36,996   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.arn'
2023-09-17T04:46:36,997   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.hdb'
2023-09-17T04:46:36,998   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.r2b'
2023-09-17T04:46:37,001   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.rtp'
2023-09-17T04:46:37,003   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffberger.itp'
2023-09-17T04:46:37,007   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffbonded.itp'
2023-09-17T04:46:37,009   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffnonbonded.itp'
2023-09-17T04:46:37,011   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.doc'
2023-09-17T04:46:37,012   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.itp'
2023-09-17T04:46:37,014   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/gbsa.itp'
2023-09-17T04:46:37,015   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ions.itp'
2023-09-17T04:46:37,171   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres.mtp'
2023-09-17T04:46:37,528   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres.rtp'
2023-09-17T04:46:37,792   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.mtp'
2023-09-17T04:46:37,965   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.rtp'
2023-09-17T04:46:38,237   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer.itp'
2023-09-17T04:46:38,341   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer_posre.itp'
2023-09-17T04:46:38,435   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.arn'
2023-09-17T04:46:38,443   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.hdb'
2023-09-17T04:46:38,445   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.r2b'
2023-09-17T04:46:38,450   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.rtp'
2023-09-17T04:46:38,453   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spc.itp'
2023-09-17T04:46:38,455   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spce.itp'
2023-09-17T04:46:38,457   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip3p.itp'
2023-09-17T04:46:38,459   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4p.itp'
2023-09-17T04:46:38,462   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4pew.itp'
2023-09-17T04:46:38,464   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip5p.itp'
2023-09-17T04:46:38,467   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/urea.itp'
2023-09-17T04:46:38,470   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/watermodels.dat'
2023-09-17T04:46:38,477   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/atomtypes.atp'
2023-09-17T04:46:38,504   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/cmap.itp'
2023-09-17T04:46:38,510   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/dna.rtp_backup'
2023-09-17T04:46:38,619   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/ffbonded.itp'
2023-09-17T04:46:38,745   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/ffnonbonded.itp'
2023-09-17T04:46:38,760   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.doc'
2023-09-17T04:46:38,761   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.itp'
2023-09-17T04:46:38,763   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/gb.itp'
2023-09-17T04:46:38,764   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/ions.itp'
2023-09-17T04:46:38,765   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.arn'
2023-09-17T04:46:38,766   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.c.tdb'
2023-09-17T04:46:38,768   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.hdb'
2023-09-17T04:46:38,770   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.n.tdb'
2023-09-17T04:46:38,771   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.r2b'
2023-09-17T04:46:38,907   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.rtp'
2023-09-17T04:46:38,917   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.vsd'
2023-09-17T04:46:38,935   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.mtp'
2023-09-17T04:46:38,944   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.rtp'
2023-09-17T04:46:38,946   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/nbfix.itp'
2023-09-17T04:46:38,948   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/spc.itp'
2023-09-17T04:46:38,949   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/spce.itp'
2023-09-17T04:46:38,950   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/tip3p.itp'
2023-09-17T04:46:38,951   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/tip4p.itp'
2023-09-17T04:46:38,956   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/watermodels.dat'
2023-09-17T04:46:38,959   adding 'pmx/extensions/pmx/Energy.c'
2023-09-17T04:46:38,961   adding 'pmx/extensions/pmx/Geometry.c'
2023-09-17T04:46:38,964   adding 'pmx/extensions/pmx/Geometry.h'
2023-09-17T04:46:38,965   adding 'pmx/extensions/pmx/cpp_test.cpp'
2023-09-17T04:46:38,967   adding 'pmx/extensions/pmx/init.c'
2023-09-17T04:46:38,968   adding 'pmx/extensions/pmx/pmx.h'
2023-09-17T04:46:38,971   adding 'pmx/extensions/pmx/wrap_Geometry.c'
2023-09-17T04:46:38,973   adding 'pmx/extensions/xdr/trr2xtc.c'
2023-09-17T04:46:38,980   adding 'pmx/extensions/xdr/xdrfile.c'
2023-09-17T04:46:38,983   adding 'pmx/extensions/xdr/xdrfile.h'
2023-09-17T04:46:38,985   adding 'pmx/extensions/xdr/xdrfile_c_test.c'
2023-09-17T04:46:38,987   adding 'pmx/extensions/xdr/xdrfile_trr.c'
2023-09-17T04:46:38,988   adding 'pmx/extensions/xdr/xdrfile_trr.h'
2023-09-17T04:46:38,990   adding 'pmx/extensions/xdr/xdrfile_xtc.c'
2023-09-17T04:46:38,992   adding 'pmx/extensions/xdr/xdrfile_xtc.h'
2023-09-17T04:46:38,994   adding 'pmx/scripts/__init__.py'
2023-09-17T04:46:38,998   adding 'pmx/scripts/analyze_dhdl.py'
2023-09-17T04:46:39,000   adding 'pmx/scripts/cli.py'
2023-09-17T04:46:39,006   adding 'pmx/scripts/generate_hybrid_residue.py'
2023-09-17T04:46:39,011   adding 'pmx/scripts/generate_hybrid_topology.py'
2023-09-17T04:46:39,013   adding 'pmx/scripts/make_amber.py'
2023-09-17T04:46:39,015   adding 'pmx/scripts/md_setup.py'
2023-09-17T04:46:39,019   adding 'pmx/scripts/mutate.py'
2023-09-17T04:46:39,020   adding 'pmx/scripts/prepare_crooks_runs.py'
2023-09-17T04:46:39,022   adding 'pmx/scripts/set_gmxlib.py'
2023-09-17T04:46:39,031   adding 'pmx/scripts/ligands/atoms_to_morph.py'
2023-09-17T04:46:39,041   adding 'pmx/scripts/ligands/atoms_to_morph_rdkit2018.py'
2023-09-17T04:46:39,045   adding 'pmx/scripts/ligands/build_mst_graph.py'
2023-09-17T04:46:39,049   adding 'pmx/scripts/ligands/make_hybrid.py'
2023-09-17T04:46:39,051   adding 'pmx/scripts/ligands/one_ff_file.py'
2023-09-17T04:46:39,054   adding 'pmx_satumut-2.0.3.dist-info/LICENSE'
2023-09-17T04:46:39,055   adding 'pmx_satumut-2.0.3.dist-info/METADATA'
2023-09-17T04:46:39,056   adding 'pmx_satumut-2.0.3.dist-info/WHEEL'
2023-09-17T04:46:39,057   adding 'pmx_satumut-2.0.3.dist-info/entry_points.txt'
2023-09-17T04:46:39,058   adding 'pmx_satumut-2.0.3.dist-info/top_level.txt'
2023-09-17T04:46:39,064   adding 'pmx_satumut-2.0.3.dist-info/RECORD'
2023-09-17T04:46:39,147   removing build/bdist.linux-armv7l/wheel
2023-09-17T04:46:39,411   Building wheel for pmx-satumut (setup.py): finished with status 'done'
2023-09-17T04:46:39,492   Created wheel for pmx-satumut: filename=pmx_satumut-2.0.3-cp311-cp311-linux_armv7l.whl size=6607684 sha256=82135682826d8ead1bde1fe92b1e866750e33be0e4c0760131ed922401e117e9
2023-09-17T04:46:39,493   Stored in directory: /tmp/pip-ephem-wheel-cache-exh3acin/wheels/8d/fb/1e/dbb77a75b4d7944cbd9605e02d5c0533123033e537f0f1d581
2023-09-17T04:46:39,516 Successfully built pmx-satumut
2023-09-17T04:46:39,696 Removed build tracker: '/tmp/pip-build-tracker-f7skmhk9'