2023-09-17T15:42:30,256 Created temporary directory: /tmp/pip-build-tracker-irv9ax5o
2023-09-17T15:42:30,258 Initialized build tracking at /tmp/pip-build-tracker-irv9ax5o
2023-09-17T15:42:30,258 Created build tracker: /tmp/pip-build-tracker-irv9ax5o
2023-09-17T15:42:30,258 Entered build tracker: /tmp/pip-build-tracker-irv9ax5o
2023-09-17T15:42:30,259 Created temporary directory: /tmp/pip-wheel-pzd6cknu
2023-09-17T15:42:30,262 Created temporary directory: /tmp/pip-ephem-wheel-cache-tuqiptdr
2023-09-17T15:42:30,283 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-17T15:42:30,287 2 location(s) to search for versions of py-cortex-api:
2023-09-17T15:42:30,287 * https://pypi.org/simple/py-cortex-api/
2023-09-17T15:42:30,287 * https://www.piwheels.org/simple/py-cortex-api/
2023-09-17T15:42:30,288 Fetching project page and analyzing links: https://pypi.org/simple/py-cortex-api/
2023-09-17T15:42:30,289 Getting page https://pypi.org/simple/py-cortex-api/
2023-09-17T15:42:30,290 Found index url https://pypi.org/simple/
2023-09-17T15:42:30,510 Fetched page https://pypi.org/simple/py-cortex-api/ as application/vnd.pypi.simple.v1+json
2023-09-17T15:42:30,512   Found link https://files.pythonhosted.org/packages/10/9a/15dd2926e462ede2596498e7fdaff6177f47a0a3e0e7d55809a295c7c2e0/py-cortex-api-1.0.tar.gz (from https://pypi.org/simple/py-cortex-api/), version: 1.0
2023-09-17T15:42:30,512   Found link https://files.pythonhosted.org/packages/4f/9b/5df6d4526ebcc12ee6d6a932150243ea6d74e7749b813b898504c51e8fd4/py-cortex-api-2.0.0.tar.gz (from https://pypi.org/simple/py-cortex-api/), version: 2.0.0
2023-09-17T15:42:30,513   Found link https://files.pythonhosted.org/packages/0f/73/39f8d4af8a1819908811755effc9ef16e8a650360e4d9a97aa9f57a24010/py-cortex-api-2.1.0.tar.gz (from https://pypi.org/simple/py-cortex-api/), version: 2.1.0
2023-09-17T15:42:30,514   Found link https://files.pythonhosted.org/packages/8a/0b/c81cf0f0feeda39cc42e7551864635ac911a3312406d3d68e836b1058a5e/py-cortex-api-2.2.0.tar.gz (from https://pypi.org/simple/py-cortex-api/), version: 2.2.0
2023-09-17T15:42:30,514   Found link https://files.pythonhosted.org/packages/85/e6/39478462ebcc183ec04acf85dfda6ef3a6cc3b8dd783b50432014170844f/py-cortex-api-2.2.1.tar.gz (from https://pypi.org/simple/py-cortex-api/), version: 2.2.1
2023-09-17T15:42:30,515 Fetching project page and analyzing links: https://www.piwheels.org/simple/py-cortex-api/
2023-09-17T15:42:30,516 Getting page https://www.piwheels.org/simple/py-cortex-api/
2023-09-17T15:42:30,517 Found index url https://www.piwheels.org/simple/
2023-09-17T15:42:30,776 Fetched page https://www.piwheels.org/simple/py-cortex-api/ as text/html
2023-09-17T15:42:30,777 Skipping link: not a file: https://www.piwheels.org/simple/py-cortex-api/
2023-09-17T15:42:30,778 Skipping link: not a file: https://pypi.org/simple/py-cortex-api/
2023-09-17T15:42:30,797 Given no hashes to check 1 links for project 'py-cortex-api': discarding no candidates
2023-09-17T15:42:30,815 Collecting py-cortex-api==2.2.1
2023-09-17T15:42:30,817   Created temporary directory: /tmp/pip-unpack-04rzsl1p
2023-09-17T15:42:31,037   Downloading py-cortex-api-2.2.1.tar.gz (17 kB)
2023-09-17T15:42:31,077   Added py-cortex-api==2.2.1 from https://files.pythonhosted.org/packages/85/e6/39478462ebcc183ec04acf85dfda6ef3a6cc3b8dd783b50432014170844f/py-cortex-api-2.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-irv9ax5o'
2023-09-17T15:42:31,079   Running setup.py (path:/tmp/pip-wheel-pzd6cknu/py-cortex-api_b47d26208e6240a9946d19ca77d8c2f5/setup.py) egg_info for package py-cortex-api
2023-09-17T15:42:31,080   Created temporary directory: /tmp/pip-pip-egg-info-gagpwyw5
2023-09-17T15:42:31,080   Preparing metadata (setup.py): started
2023-09-17T15:42:31,081   Running command python setup.py egg_info
2023-09-17T15:42:32,145   running egg_info
2023-09-17T15:42:32,147   creating /tmp/pip-pip-egg-info-gagpwyw5/py_cortex_api.egg-info
2023-09-17T15:42:32,178   writing /tmp/pip-pip-egg-info-gagpwyw5/py_cortex_api.egg-info/PKG-INFO
2023-09-17T15:42:32,181   writing dependency_links to /tmp/pip-pip-egg-info-gagpwyw5/py_cortex_api.egg-info/dependency_links.txt
2023-09-17T15:42:32,183   writing requirements to /tmp/pip-pip-egg-info-gagpwyw5/py_cortex_api.egg-info/requires.txt
2023-09-17T15:42:32,184   writing top-level names to /tmp/pip-pip-egg-info-gagpwyw5/py_cortex_api.egg-info/top_level.txt
2023-09-17T15:42:32,185   writing manifest file '/tmp/pip-pip-egg-info-gagpwyw5/py_cortex_api.egg-info/SOURCES.txt'
2023-09-17T15:42:32,234   reading manifest file '/tmp/pip-pip-egg-info-gagpwyw5/py_cortex_api.egg-info/SOURCES.txt'
2023-09-17T15:42:32,236   reading manifest template 'MANIFEST.in'
2023-09-17T15:42:32,238   warning: no files found matching 'cortex/ext/cortex/bin/cortex_var_31_c1'
2023-09-17T15:42:32,239   warning: no files found matching 'cortex/ext/cortex/bin/cortex_var_31_c2'
2023-09-17T15:42:32,239   warning: no previously-included files matching '*~' found anywhere in distribution
2023-09-17T15:42:32,240   warning: no previously-included files matching '*.swp' found anywhere in distribution
2023-09-17T15:42:32,241   adding license file 'LICENSE'
2023-09-17T15:42:32,242   writing manifest file '/tmp/pip-pip-egg-info-gagpwyw5/py_cortex_api.egg-info/SOURCES.txt'
2023-09-17T15:42:32,364   Preparing metadata (setup.py): finished with status 'done'
2023-09-17T15:42:32,368   Source in /tmp/pip-wheel-pzd6cknu/py-cortex-api_b47d26208e6240a9946d19ca77d8c2f5 has version 2.2.1, which satisfies requirement py-cortex-api==2.2.1 from https://files.pythonhosted.org/packages/85/e6/39478462ebcc183ec04acf85dfda6ef3a6cc3b8dd783b50432014170844f/py-cortex-api-2.2.1.tar.gz
2023-09-17T15:42:32,369   Removed py-cortex-api==2.2.1 from https://files.pythonhosted.org/packages/85/e6/39478462ebcc183ec04acf85dfda6ef3a6cc3b8dd783b50432014170844f/py-cortex-api-2.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-irv9ax5o'
2023-09-17T15:42:32,373 Created temporary directory: /tmp/pip-unpack-w4_dbaez
2023-09-17T15:42:32,374 Created temporary directory: /tmp/pip-unpack-fmmymdnq
2023-09-17T15:42:32,378 Building wheels for collected packages: py-cortex-api
2023-09-17T15:42:32,382   Created temporary directory: /tmp/pip-wheel-ufev_zsx
2023-09-17T15:42:32,383   Building wheel for py-cortex-api (setup.py): started
2023-09-17T15:42:32,384   Destination directory: /tmp/pip-wheel-ufev_zsx
2023-09-17T15:42:32,384   Running command python setup.py bdist_wheel
2023-09-17T15:42:33,431   running bdist_wheel
2023-09-17T15:42:33,525   running build
2023-09-17T15:42:33,526   running build_py
2023-09-17T15:42:33,527   START: Building backend dependencies
2023-09-17T15:42:33,873   Cloning into 'minimap2'...
2023-09-17T15:42:33,874   fatal: transport 'https' not allowed
2023-09-17T15:42:33,875   ./cortex/ext/install_dependencies.sh: line 16: cd: minimap2_dir: No such file or directory
2023-09-17T15:42:33,876   make: *** No targets specified and no makefile found.  Stop.

2023-09-17T15:42:33,878   ERROR: backend compilation failed 2
2023-09-17T15:42:33,996   ERROR: [present-rich] python setup.py bdist_wheel exited with 255
2023-09-17T15:42:34,009   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2023-09-17T15:42:34,009   exec(compile('"'"''"'"''"'"'
2023-09-17T15:42:34,009   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-17T15:42:34,009   #
2023-09-17T15:42:34,009   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-17T15:42:34,009   #   import from `distutils.core` to work with newer packaging standards.
2023-09-17T15:42:34,009   # - It provides a clear error message when setuptools is not installed.
2023-09-17T15:42:34,009   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-17T15:42:34,009   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-17T15:42:34,009   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-17T15:42:34,009   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-17T15:42:34,009   import os, sys, tokenize
2023-09-17T15:42:34,009   
2023-09-17T15:42:34,009   try:
2023-09-17T15:42:34,009       import setuptools
2023-09-17T15:42:34,009   except ImportError as error:
2023-09-17T15:42:34,009       print(
2023-09-17T15:42:34,009           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-17T15:42:34,009           "the build environment.",
2023-09-17T15:42:34,009           file=sys.stderr,
2023-09-17T15:42:34,009       )
2023-09-17T15:42:34,009       sys.exit(1)
2023-09-17T15:42:34,009   
2023-09-17T15:42:34,009   __file__ = %r
2023-09-17T15:42:34,009   sys.argv[0] = __file__
2023-09-17T15:42:34,009   
2023-09-17T15:42:34,009   if os.path.exists(__file__):
2023-09-17T15:42:34,009       filename = __file__
2023-09-17T15:42:34,009       with tokenize.open(__file__) as f:
2023-09-17T15:42:34,009           setup_py_code = f.read()
2023-09-17T15:42:34,009   else:
2023-09-17T15:42:34,009       filename = "<auto-generated setuptools caller>"
2023-09-17T15:42:34,009       setup_py_code = "from setuptools import setup; setup()"
2023-09-17T15:42:34,009   
2023-09-17T15:42:34,009   exec(compile(setup_py_code, filename, "exec"))
2023-09-17T15:42:34,009   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-pzd6cknu/py-cortex-api_b47d26208e6240a9946d19ca77d8c2f5/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-ufev_zsx[/]
2023-09-17T15:42:34,010   [bold magenta]cwd[/]: /tmp/pip-wheel-pzd6cknu/py-cortex-api_b47d26208e6240a9946d19ca77d8c2f5/
2023-09-17T15:42:34,010   Building wheel for py-cortex-api (setup.py): finished with status 'error'
2023-09-17T15:42:34,012   ERROR: Failed building wheel for py-cortex-api
2023-09-17T15:42:34,013   Running setup.py clean for py-cortex-api
2023-09-17T15:42:34,014   Running command python setup.py clean
2023-09-17T15:42:35,052   running clean
2023-09-17T15:42:35,098   'build/lib' does not exist -- can't clean it
2023-09-17T15:42:35,098   'build/bdist.linux-armv7l' does not exist -- can't clean it
2023-09-17T15:42:35,099   'build/scripts-3.11' does not exist -- can't clean it
2023-09-17T15:42:35,220 Failed to build py-cortex-api
2023-09-17T15:42:35,222 ERROR: Failed to build one or more wheels
2023-09-17T15:42:35,223 Exception information:
2023-09-17T15:42:35,223 Traceback (most recent call last):
2023-09-17T15:42:35,223   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-17T15:42:35,223     status = run_func(*args)
2023-09-17T15:42:35,223              ^^^^^^^^^^^^^^^
2023-09-17T15:42:35,223   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-17T15:42:35,223     return func(self, options, args)
2023-09-17T15:42:35,223            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-17T15:42:35,223   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run
2023-09-17T15:42:35,223     raise CommandError("Failed to build one or more wheels")
2023-09-17T15:42:35,223 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2023-09-17T15:42:35,226 Removed build tracker: '/tmp/pip-build-tracker-irv9ax5o'