2023-09-18T00:16:05,638 Created temporary directory: /tmp/pip-build-tracker-a7plntg1 2023-09-18T00:16:05,639 Initialized build tracking at /tmp/pip-build-tracker-a7plntg1 2023-09-18T00:16:05,640 Created build tracker: /tmp/pip-build-tracker-a7plntg1 2023-09-18T00:16:05,640 Entered build tracker: /tmp/pip-build-tracker-a7plntg1 2023-09-18T00:16:05,641 Created temporary directory: /tmp/pip-wheel-na7lh0f_ 2023-09-18T00:16:05,644 Created temporary directory: /tmp/pip-ephem-wheel-cache-566jnzkn 2023-09-18T00:16:05,665 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-18T00:16:05,669 2 location(s) to search for versions of glycopeptidepy: 2023-09-18T00:16:05,669 * https://pypi.org/simple/glycopeptidepy/ 2023-09-18T00:16:05,669 * https://www.piwheels.org/simple/glycopeptidepy/ 2023-09-18T00:16:05,670 Fetching project page and analyzing links: https://pypi.org/simple/glycopeptidepy/ 2023-09-18T00:16:05,671 Getting page https://pypi.org/simple/glycopeptidepy/ 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2023-09-18T00:16:08,548 Created temporary directory: /tmp/pip-build-env-tbs6x8vc 2023-09-18T00:16:08,552 Installing build dependencies: started 2023-09-18T00:16:08,554 Running command pip subprocess to install build dependencies 2023-09-18T00:16:09,691 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-18T00:16:10,213 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-18T00:16:11,942 Collecting setuptools 2023-09-18T00:16:11,943 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-18T00:16:11,950 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-18T00:16:12,153 Collecting wheel 2023-09-18T00:16:12,168 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-18T00:16:13,548 Collecting Cython 2023-09-18T00:16:13,549 Obtaining dependency information for Cython from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata 2023-09-18T00:16:13,554 Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-18T00:16:13,875 Collecting glypy 2023-09-18T00:16:13,900 Downloading https://www.piwheels.org/simple/glypy/glypy-1.0.3-cp311-cp311-linux_armv7l.whl (1.7 MB) 2023-09-18T00:16:14,074 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 10.4 MB/s eta 0:00:00 2023-09-18T00:16:14,456 Collecting hjson (from glypy) 2023-09-18T00:16:14,469 Downloading https://www.piwheels.org/simple/hjson/hjson-3.1.0-py3-none-any.whl (54 kB) 2023-09-18T00:16:14,501 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.0/54.0 kB 1.8 MB/s eta 0:00:00 2023-09-18T00:16:14,639 Collecting six (from glypy) 2023-09-18T00:16:14,677 Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB) 2023-09-18T00:16:14,726 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-18T00:16:14,771 Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB) 2023-09-18T00:16:17,386 Installing collected packages: hjson, wheel, six, setuptools, Cython, glypy 2023-09-18T00:16:17,684 Creating /tmp/pip-build-env-tbs6x8vc/overlay/local/bin 2023-09-18T00:16:17,686 changing mode of /tmp/pip-build-env-tbs6x8vc/overlay/local/bin/hjson to 755 2023-09-18T00:16:17,910 changing mode of /tmp/pip-build-env-tbs6x8vc/overlay/local/bin/wheel to 755 2023-09-18T00:16:22,948 changing mode of /tmp/pip-build-env-tbs6x8vc/overlay/local/bin/cygdb to 755 2023-09-18T00:16:22,950 changing mode of /tmp/pip-build-env-tbs6x8vc/overlay/local/bin/cython to 755 2023-09-18T00:16:22,952 changing mode of /tmp/pip-build-env-tbs6x8vc/overlay/local/bin/cythonize to 755 2023-09-18T00:16:24,298 Successfully installed Cython-3.0.2 glypy-1.0.3 hjson-3.1.0 setuptools-68.2.2 six-1.16.0 wheel-0.41.2 2023-09-18T00:16:24,912 Installing build dependencies: finished with status 'done' 2023-09-18T00:16:24,925 Getting requirements to build wheel: started 2023-09-18T00:16:24,926 Running command Getting requirements to build wheel 2023-09-18T00:16:29,368 /tmp/pip-build-env-tbs6x8vc/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-na7lh0f_/glycopeptidepy_06af4ea6c27e4fcbbc5e7203d2c9f6cf/glycopeptidepy/_c/algorithm.pyx 2023-09-18T00:16:29,368 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T00:16:30,626 /tmp/pip-build-env-tbs6x8vc/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-na7lh0f_/glycopeptidepy_06af4ea6c27e4fcbbc5e7203d2c9f6cf/glycopeptidepy/_c/collectiontools.pxd 2023-09-18T00:16:30,627 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T00:16:32,412 /tmp/pip-build-env-tbs6x8vc/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-na7lh0f_/glycopeptidepy_06af4ea6c27e4fcbbc5e7203d2c9f6cf/glycopeptidepy/_c/count_table.pxd 2023-09-18T00:16:32,412 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T00:16:33,882 warning: glycopeptidepy/_c/count_table.pyx:15:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:33,899 warning: glycopeptidepy/_c/count_table.pyx:102:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:33,919 warning: glycopeptidepy/_c/count_table.pyx:184:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:33,922 warning: glycopeptidepy/_c/count_table.pyx:195:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:35,483 /tmp/pip-build-env-tbs6x8vc/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-na7lh0f_/glycopeptidepy_06af4ea6c27e4fcbbc5e7203d2c9f6cf/glycopeptidepy/_c/parser.pxd 2023-09-18T00:16:35,484 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T00:16:37,355 warning: glycopeptidepy/_c/parser.pyx:224:23: Unreachable code 2023-09-18T00:16:37,713 /tmp/pip-build-env-tbs6x8vc/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-na7lh0f_/glycopeptidepy_06af4ea6c27e4fcbbc5e7203d2c9f6cf/glycopeptidepy/_c/structure/base.pxd 2023-09-18T00:16:37,714 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T00:16:37,725 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:37,726 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:37,727 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:37,727 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:37,797 warning: glycopeptidepy/_c/structure/base.pyx:11:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:37,799 warning: glycopeptidepy/_c/structure/base.pyx:17:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:39,312 /tmp/pip-build-env-tbs6x8vc/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-na7lh0f_/glycopeptidepy_06af4ea6c27e4fcbbc5e7203d2c9f6cf/glycopeptidepy/_c/structure/constants.pxd 2023-09-18T00:16:39,312 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T00:16:39,517 /tmp/pip-build-env-tbs6x8vc/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-na7lh0f_/glycopeptidepy_06af4ea6c27e4fcbbc5e7203d2c9f6cf/glycopeptidepy/_c/structure/fragment.pxd 2023-09-18T00:16:39,517 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T00:16:41,111 warning: glycopeptidepy/_c/structure/fragment.pyx:41:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:41,111 warning: glycopeptidepy/_c/structure/fragment.pyx:42:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:41,512 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:41,513 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:41,513 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:41,514 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:43,213 /tmp/pip-build-env-tbs6x8vc/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-na7lh0f_/glycopeptidepy_06af4ea6c27e4fcbbc5e7203d2c9f6cf/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd 2023-09-18T00:16:43,213 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T00:16:44,889 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:44,890 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:44,890 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:44,891 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:45,210 /tmp/pip-build-env-tbs6x8vc/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-na7lh0f_/glycopeptidepy_06af4ea6c27e4fcbbc5e7203d2c9f6cf/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd 2023-09-18T00:16:45,210 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T00:16:46,803 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:46,803 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:46,804 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:46,805 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:49,334 /tmp/pip-build-env-tbs6x8vc/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-na7lh0f_/glycopeptidepy_06af4ea6c27e4fcbbc5e7203d2c9f6cf/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd 2023-09-18T00:16:49,335 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T00:16:50,863 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:50,863 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:50,864 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:50,864 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:52,738 /tmp/pip-build-env-tbs6x8vc/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-na7lh0f_/glycopeptidepy_06af4ea6c27e4fcbbc5e7203d2c9f6cf/glycopeptidepy/_c/structure/glycan.pxd 2023-09-18T00:16:52,739 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T00:16:52,819 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:52,820 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:52,821 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:52,821 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:54,562 /tmp/pip-build-env-tbs6x8vc/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-na7lh0f_/glycopeptidepy_06af4ea6c27e4fcbbc5e7203d2c9f6cf/glycopeptidepy/_c/structure/modification/modification.pxd 2023-09-18T00:16:54,563 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T00:16:54,582 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:54,582 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:54,583 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:54,584 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:55,040 /tmp/pip-build-env-tbs6x8vc/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-na7lh0f_/glycopeptidepy_06af4ea6c27e4fcbbc5e7203d2c9f6cf/glycopeptidepy/_c/structure/modification/rule.pxd 2023-09-18T00:16:55,040 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T00:16:55,097 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:55,098 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:55,099 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:55,099 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:55,789 /tmp/pip-build-env-tbs6x8vc/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-na7lh0f_/glycopeptidepy_06af4ea6c27e4fcbbc5e7203d2c9f6cf/glycopeptidepy/_c/structure/modification/source.pxd 2023-09-18T00:16:55,789 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T00:16:55,851 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:55,852 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:55,852 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:55,853 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:56,680 /tmp/pip-build-env-tbs6x8vc/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-na7lh0f_/glycopeptidepy_06af4ea6c27e4fcbbc5e7203d2c9f6cf/glycopeptidepy/_c/structure/sequence_methods.pxd 2023-09-18T00:16:56,681 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T00:16:56,739 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:56,739 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:56,740 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:56,740 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T00:16:59,434 Compiling glycopeptidepy/_c/collectiontools.pyx because it changed. 2023-09-18T00:16:59,434 Compiling glycopeptidepy/_c/count_table.pyx because it changed. 2023-09-18T00:16:59,435 Compiling glycopeptidepy/_c/parser.pyx because it changed. 2023-09-18T00:16:59,435 Compiling glycopeptidepy/_c/structure/base.pyx because it changed. 2023-09-18T00:16:59,436 Compiling glycopeptidepy/_c/structure/fragment.pyx because it changed. 2023-09-18T00:16:59,436 Compiling glycopeptidepy/_c/structure/constants.pyx because it changed. 2023-09-18T00:16:59,437 Compiling glycopeptidepy/_c/structure/glycan.pyx because it changed. 2023-09-18T00:16:59,437 Compiling glycopeptidepy/_c/structure/sequence_methods.pyx because it changed. 2023-09-18T00:16:59,438 Compiling glycopeptidepy/_c/structure/modification/rule.pyx because it changed. 2023-09-18T00:16:59,438 Compiling glycopeptidepy/_c/structure/modification/modification.pyx because it changed. 2023-09-18T00:16:59,439 Compiling glycopeptidepy/_c/structure/modification/source.pyx because it changed. 2023-09-18T00:16:59,439 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it changed. 2023-09-18T00:16:59,440 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it changed. 2023-09-18T00:16:59,440 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it changed. 2023-09-18T00:16:59,441 Compiling glycopeptidepy/_c/algorithm.pyx because it changed. 2023-09-18T00:16:59,441 [ 1/15] Cythonizing glycopeptidepy/_c/algorithm.pyx 2023-09-18T00:16:59,442 [ 2/15] Cythonizing glycopeptidepy/_c/collectiontools.pyx 2023-09-18T00:16:59,443 [ 3/15] Cythonizing glycopeptidepy/_c/count_table.pyx 2023-09-18T00:16:59,443 [ 4/15] Cythonizing glycopeptidepy/_c/parser.pyx 2023-09-18T00:16:59,444 [ 5/15] Cythonizing glycopeptidepy/_c/structure/base.pyx 2023-09-18T00:16:59,444 [ 6/15] Cythonizing glycopeptidepy/_c/structure/constants.pyx 2023-09-18T00:16:59,445 [ 7/15] Cythonizing glycopeptidepy/_c/structure/fragment.pyx 2023-09-18T00:16:59,445 [ 8/15] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx 2023-09-18T00:16:59,446 [ 9/15] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx 2023-09-18T00:16:59,446 [10/15] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx 2023-09-18T00:16:59,447 [11/15] Cythonizing glycopeptidepy/_c/structure/glycan.pyx 2023-09-18T00:16:59,447 [12/15] Cythonizing glycopeptidepy/_c/structure/modification/modification.pyx 2023-09-18T00:16:59,448 [13/15] Cythonizing glycopeptidepy/_c/structure/modification/rule.pyx 2023-09-18T00:16:59,449 [14/15] Cythonizing glycopeptidepy/_c/structure/modification/source.pyx 2023-09-18T00:16:59,449 [15/15] Cythonizing glycopeptidepy/_c/structure/sequence_methods.pyx 2023-09-18T00:16:59,516 running egg_info 2023-09-18T00:16:59,522 writing glycopeptidepy.egg-info/PKG-INFO 2023-09-18T00:16:59,525 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2023-09-18T00:16:59,526 writing requirements to glycopeptidepy.egg-info/requires.txt 2023-09-18T00:16:59,527 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2023-09-18T00:16:59,576 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T00:16:59,581 reading manifest template 'MANIFEST.in' 2023-09-18T00:16:59,582 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-18T00:16:59,582 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-18T00:16:59,763 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T00:17:00,088 Getting requirements to build wheel: finished with status 'done' 2023-09-18T00:17:00,099 Created temporary directory: /tmp/pip-modern-metadata-8jv09i9s 2023-09-18T00:17:00,101 Preparing metadata (pyproject.toml): started 2023-09-18T00:17:00,102 Running command Preparing metadata (pyproject.toml) 2023-09-18T00:17:03,025 running dist_info 2023-09-18T00:17:03,046 creating /tmp/pip-modern-metadata-8jv09i9s/glycopeptidepy.egg-info 2023-09-18T00:17:03,052 writing /tmp/pip-modern-metadata-8jv09i9s/glycopeptidepy.egg-info/PKG-INFO 2023-09-18T00:17:03,056 writing dependency_links to /tmp/pip-modern-metadata-8jv09i9s/glycopeptidepy.egg-info/dependency_links.txt 2023-09-18T00:17:03,058 writing requirements to /tmp/pip-modern-metadata-8jv09i9s/glycopeptidepy.egg-info/requires.txt 2023-09-18T00:17:03,059 writing top-level names to /tmp/pip-modern-metadata-8jv09i9s/glycopeptidepy.egg-info/top_level.txt 2023-09-18T00:17:03,061 writing manifest file '/tmp/pip-modern-metadata-8jv09i9s/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T00:17:03,095 reading manifest file '/tmp/pip-modern-metadata-8jv09i9s/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T00:17:03,097 reading manifest template 'MANIFEST.in' 2023-09-18T00:17:03,098 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-18T00:17:03,099 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-18T00:17:03,291 writing manifest file '/tmp/pip-modern-metadata-8jv09i9s/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T00:17:03,292 creating '/tmp/pip-modern-metadata-8jv09i9s/glycopeptidepy-0.0.16.dist-info' 2023-09-18T00:17:03,518 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-18T00:17:03,522 Source in /tmp/pip-wheel-na7lh0f_/glycopeptidepy_06af4ea6c27e4fcbbc5e7203d2c9f6cf has version 0.0.16, which satisfies requirement glycopeptidepy==0.0.16 from https://files.pythonhosted.org/packages/c9/3d/67a7af5d17008b296c8e40c9a24c29b8b188f0121883f09656802968f498/glycopeptidepy-0.0.16.tar.gz 2023-09-18T00:17:03,524 Removed glycopeptidepy==0.0.16 from https://files.pythonhosted.org/packages/c9/3d/67a7af5d17008b296c8e40c9a24c29b8b188f0121883f09656802968f498/glycopeptidepy-0.0.16.tar.gz from build tracker '/tmp/pip-build-tracker-a7plntg1' 2023-09-18T00:17:03,527 Created temporary directory: /tmp/pip-unpack-4fx7vlqc 2023-09-18T00:17:03,528 Created temporary directory: /tmp/pip-unpack-qkuz44k3 2023-09-18T00:17:03,537 Building wheels for collected packages: glycopeptidepy 2023-09-18T00:17:03,541 Created temporary directory: /tmp/pip-wheel-j7ga1ngg 2023-09-18T00:17:03,542 Destination directory: /tmp/pip-wheel-j7ga1ngg 2023-09-18T00:17:03,544 Building wheel for glycopeptidepy (pyproject.toml): started 2023-09-18T00:17:03,546 Running command Building wheel for glycopeptidepy (pyproject.toml) 2023-09-18T00:17:06,433 running bdist_wheel 2023-09-18T00:17:06,471 running build 2023-09-18T00:17:06,472 running build_py 2023-09-18T00:17:06,480 creating build 2023-09-18T00:17:06,481 creating build/lib.linux-armv7l-cpython-311 2023-09-18T00:17:06,482 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T00:17:06,483 copying glycopeptidepy/algorithm.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T00:17:06,486 copying glycopeptidepy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T00:17:06,488 copying glycopeptidepy/version.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T00:17:06,489 copying glycopeptidepy/enzyme.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T00:17:06,492 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T00:17:06,493 copying glycopeptidepy/utils/sequence_tree.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T00:17:06,495 copying glycopeptidepy/utils/collectiontools.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T00:17:06,497 copying glycopeptidepy/utils/memoize.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T00:17:06,499 copying glycopeptidepy/utils/iterators.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T00:17:06,501 copying glycopeptidepy/utils/intervals.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T00:17:06,504 copying glycopeptidepy/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T00:17:06,507 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T00:17:06,508 copying glycopeptidepy/io/nextprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T00:17:06,510 copying glycopeptidepy/io/mzid.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T00:17:06,512 copying glycopeptidepy/io/uniprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T00:17:06,515 copying glycopeptidepy/io/utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T00:17:06,517 copying glycopeptidepy/io/fasta.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T00:17:06,520 copying glycopeptidepy/io/annotation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T00:17:06,523 copying glycopeptidepy/io/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T00:17:06,525 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T00:17:06,526 copying glycopeptidepy/_c/cythonize.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T00:17:06,529 copying glycopeptidepy/_c/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T00:17:06,531 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T00:17:06,532 copying glycopeptidepy/structure/sequence_composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T00:17:06,535 copying glycopeptidepy/structure/terminal_group.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T00:17:06,537 copying glycopeptidepy/structure/fragment.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T00:17:06,540 copying glycopeptidepy/structure/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T00:17:06,542 copying glycopeptidepy/structure/parser.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T00:17:06,545 copying glycopeptidepy/structure/constants.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T00:17:06,547 copying glycopeptidepy/structure/residue.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T00:17:06,549 copying glycopeptidepy/structure/composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T00:17:06,551 copying glycopeptidepy/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T00:17:06,553 copying glycopeptidepy/structure/glycan.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T00:17:06,557 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T00:17:06,558 copying glycopeptidepy/test/test_utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T00:17:06,560 copying glycopeptidepy/test/test_modification.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T00:17:06,562 copying glycopeptidepy/test/common.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T00:17:06,564 copying glycopeptidepy/test/test_uniprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T00:17:06,566 copying glycopeptidepy/test/test_algorithms.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T00:17:06,568 copying glycopeptidepy/test/test_fasta.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T00:17:06,570 copying glycopeptidepy/test/test_fragment.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T00:17:06,573 copying glycopeptidepy/test/test_intervals.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T00:17:06,575 copying glycopeptidepy/test/test_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T00:17:06,577 copying glycopeptidepy/test/test_residue.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T00:17:06,579 copying glycopeptidepy/test/test_enzyme.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T00:17:06,581 copying glycopeptidepy/test/test_sequence_composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T00:17:06,583 copying glycopeptidepy/test/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T00:17:06,585 copying glycopeptidepy/test/test_fragmentation_strategy.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T00:17:06,588 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T00:17:06,589 copying glycopeptidepy/io/cv/peff.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T00:17:06,592 copying glycopeptidepy/io/cv/term.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T00:17:06,594 copying glycopeptidepy/io/cv/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T00:17:06,596 copying glycopeptidepy/io/cv/uniprot_ptm.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T00:17:06,598 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T00:17:06,599 copying glycopeptidepy/_c/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T00:17:06,602 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:17:06,604 copying glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:17:06,606 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T00:17:06,607 copying glycopeptidepy/_c/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T00:17:06,610 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T00:17:06,611 copying glycopeptidepy/structure/fragmentation_strategy/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T00:17:06,613 copying glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T00:17:06,616 copying glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T00:17:06,618 copying glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T00:17:06,622 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T00:17:06,624 copying glycopeptidepy/structure/modification/source.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T00:17:06,626 copying glycopeptidepy/structure/modification/descriptors.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T00:17:06,628 copying glycopeptidepy/structure/modification/utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T00:17:06,630 copying glycopeptidepy/structure/modification/target.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T00:17:06,633 copying glycopeptidepy/structure/modification/modification.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T00:17:06,635 copying glycopeptidepy/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T00:17:06,637 copying glycopeptidepy/structure/modification/rule.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T00:17:06,644 copying glycopeptidepy/structure/modification/glycosylation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T00:17:06,656 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T00:17:06,658 copying glycopeptidepy/structure/sequence/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T00:17:06,660 copying glycopeptidepy/structure/sequence/mutable_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T00:17:06,663 copying glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T00:17:06,666 copying glycopeptidepy/structure/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T00:17:06,668 copying glycopeptidepy/structure/sequence/implementation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T00:17:06,671 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T00:17:06,672 copying glycopeptidepy/structure/modification/data/patch_unimod.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T00:17:06,675 copying glycopeptidepy/structure/modification/data/unimod.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T00:17:06,680 copying glycopeptidepy/structure/modification/data/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T00:17:06,684 running egg_info 2023-09-18T00:17:06,693 writing glycopeptidepy.egg-info/PKG-INFO 2023-09-18T00:17:06,696 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2023-09-18T00:17:06,697 writing requirements to glycopeptidepy.egg-info/requires.txt 2023-09-18T00:17:06,698 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2023-09-18T00:17:06,718 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T00:17:06,723 reading manifest template 'MANIFEST.in' 2023-09-18T00:17:06,723 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-18T00:17:06,724 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-18T00:17:06,982 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T00:17:06,989 copying glycopeptidepy/_c/algorithm.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T00:17:07,008 copying glycopeptidepy/_c/algorithm.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T00:17:07,011 copying glycopeptidepy/_c/collectiontools.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T00:17:07,024 copying glycopeptidepy/_c/collectiontools.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T00:17:07,026 copying glycopeptidepy/_c/collectiontools.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T00:17:07,028 copying glycopeptidepy/_c/compat.h -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T00:17:07,031 copying glycopeptidepy/_c/compat.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T00:17:07,033 copying glycopeptidepy/_c/count_table.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T00:17:07,059 copying glycopeptidepy/_c/count_table.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T00:17:07,061 copying glycopeptidepy/_c/count_table.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T00:17:07,064 copying glycopeptidepy/_c/parser.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T00:17:07,080 copying glycopeptidepy/_c/parser.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T00:17:07,082 copying glycopeptidepy/_c/parser.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T00:17:07,085 copying glycopeptidepy/_c/structure/base.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T00:17:07,110 copying glycopeptidepy/_c/structure/base.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T00:17:07,112 copying glycopeptidepy/_c/structure/base.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T00:17:07,115 copying glycopeptidepy/_c/structure/constants.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T00:17:07,124 copying glycopeptidepy/_c/structure/constants.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T00:17:07,126 copying glycopeptidepy/_c/structure/constants.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T00:17:07,128 copying glycopeptidepy/_c/structure/fragment.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T00:17:07,167 copying glycopeptidepy/_c/structure/fragment.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T00:17:07,169 copying glycopeptidepy/_c/structure/fragment.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T00:17:07,171 copying glycopeptidepy/_c/structure/glycan.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T00:17:07,213 copying glycopeptidepy/_c/structure/glycan.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T00:17:07,217 copying glycopeptidepy/_c/structure/glycan.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T00:17:07,221 copying glycopeptidepy/_c/structure/sequence_methods.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T00:17:07,264 copying glycopeptidepy/_c/structure/sequence_methods.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T00:17:07,266 copying glycopeptidepy/_c/structure/sequence_methods.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T00:17:07,269 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:17:07,279 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:17:07,281 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:17:07,283 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:17:07,310 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:17:07,312 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:17:07,315 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:17:07,339 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:17:07,341 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:17:07,343 copying glycopeptidepy/_c/structure/modification/modification.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T00:17:07,353 copying glycopeptidepy/_c/structure/modification/modification.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T00:17:07,355 copying glycopeptidepy/_c/structure/modification/modification.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T00:17:07,357 copying glycopeptidepy/_c/structure/modification/rule.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T00:17:07,372 copying glycopeptidepy/_c/structure/modification/rule.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T00:17:07,374 copying glycopeptidepy/_c/structure/modification/rule.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T00:17:07,377 copying glycopeptidepy/_c/structure/modification/source.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T00:17:07,386 copying glycopeptidepy/_c/structure/modification/source.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T00:17:07,388 copying glycopeptidepy/_c/structure/modification/source.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T00:17:07,390 copying glycopeptidepy/_c/structure/modification/target.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T00:17:07,392 copying glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T00:17:07,394 copying glycopeptidepy/structure/modification/data/unimod.json -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T00:17:07,482 running build_ext 2023-09-18T00:17:07,488 building 'glycopeptidepy._c.collectiontools' extension 2023-09-18T00:17:07,489 creating build/temp.linux-armv7l-cpython-311 2023-09-18T00:17:07,490 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T00:17:07,491 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T00:17:07,492 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/collectiontools.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.o 2023-09-18T00:17:14,278 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so 2023-09-18T00:17:14,391 building 'glycopeptidepy._c.count_table' extension 2023-09-18T00:17:14,391 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/count_table.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.o 2023-09-18T00:17:16,183 glycopeptidepy/_c/count_table.c:4460:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist’ defined but not used [-Wunused-function] 2023-09-18T00:17:16,184 4460 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist(size_t __pyx_v_n, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_inst) { 2023-09-18T00:17:16,184 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-18T00:17:16,188 glycopeptidepy/_c/count_table.c:4189:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get’ defined but not used [-Wunused-function] 2023-09-18T00:17:16,188 4189 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2023-09-18T00:17:16,189 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-18T00:17:16,193 glycopeptidepy/_c/count_table.c:3947:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put’ defined but not used [-Wunused-function] 2023-09-18T00:17:16,193 3947 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2023-09-18T00:17:16,194 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-18T00:17:31,488 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so 2023-09-18T00:17:31,613 building 'glycopeptidepy._c.parser' extension 2023-09-18T00:17:31,614 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iglycopeptidepy/_c -I/usr/include/python3.11 -c glycopeptidepy/_c/parser.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.o 2023-09-18T00:17:32,007 In file included from glycopeptidepy/_c/parser.c:1187: 2023-09-18T00:17:32,008 glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2023-09-18T00:17:32,009 38 | #define PyInt_Check PyLong_Check 2023-09-18T00:17:32,009 | 2023-09-18T00:17:32,010 glycopeptidepy/_c/parser.c:1085: note: this is the location of the previous definition 2023-09-18T00:17:32,011 1085 | #define PyInt_Check(op) PyLong_Check(op) 2023-09-18T00:17:32,012 | 2023-09-18T00:17:32,012 glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2023-09-18T00:17:32,013 39 | #define PyInt_CheckExact PyLong_CheckExact 2023-09-18T00:17:32,014 | 2023-09-18T00:17:32,015 glycopeptidepy/_c/parser.c:1086: note: this is the location of the previous definition 2023-09-18T00:17:32,015 1086 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2023-09-18T00:17:32,016 | 2023-09-18T00:17:32,036 glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser__cstring_sequence_tokenizer’: 2023-09-18T00:17:32,041 glycopeptidepy/_c/parser.c:3603:21: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T00:17:32,042 3603 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2023-09-18T00:17:32,043 | ^ 2023-09-18T00:17:32,111 glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser_parse_simple’: 2023-09-18T00:17:32,118 glycopeptidepy/_c/parser.c:7712:23: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T00:17:32,118 7712 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2023-09-18T00:17:32,119 | ^ 2023-09-18T00:17:39,577 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so 2023-09-18T00:17:39,687 building 'glycopeptidepy._c.structure.base' extension 2023-09-18T00:17:39,688 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T00:17:39,688 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/base.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.o 2023-09-18T00:18:01,023 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so 2023-09-18T00:18:01,158 building 'glycopeptidepy._c.structure.fragment' extension 2023-09-18T00:18:01,158 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iglycopeptidepy/_c -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/fragment.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.o 2023-09-18T00:18:01,538 In file included from glycopeptidepy/_c/structure/fragment.c:1188: 2023-09-18T00:18:01,539 glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2023-09-18T00:18:01,539 38 | #define PyInt_Check PyLong_Check 2023-09-18T00:18:01,540 | 2023-09-18T00:18:01,541 glycopeptidepy/_c/structure/fragment.c:1085: note: this is the location of the previous definition 2023-09-18T00:18:01,541 1085 | #define PyInt_Check(op) PyLong_Check(op) 2023-09-18T00:18:01,542 | 2023-09-18T00:18:01,542 glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2023-09-18T00:18:01,543 39 | #define PyInt_CheckExact PyLong_CheckExact 2023-09-18T00:18:01,544 | 2023-09-18T00:18:01,544 glycopeptidepy/_c/structure/fragment.c:1086: note: this is the location of the previous definition 2023-09-18T00:18:01,545 1086 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2023-09-18T00:18:01,545 | 2023-09-18T00:18:01,585 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_init_str_ints’: 2023-09-18T00:18:01,590 glycopeptidepy/_c/structure/fragment.c:5798:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T00:18:01,590 5798 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2023-09-18T00:18:01,591 | ^ 2023-09-18T00:18:01,592 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_get_str_int’: 2023-09-18T00:18:01,598 glycopeptidepy/_c/structure/fragment.c:6027:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T00:18:01,598 6027 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2023-09-18T00:18:01,599 | ^ 2023-09-18T00:18:01,840 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_15PeptideFragment_get_fragment_name’: 2023-09-18T00:18:01,853 glycopeptidepy/_c/structure/fragment.c:14261:22: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T00:18:01,853 14261 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-18T00:18:01,854 | ^ 2023-09-18T00:18:01,871 glycopeptidepy/_c/structure/fragment.c:14576:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T00:18:01,872 14576 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-18T00:18:01,873 | ^ 2023-09-18T00:18:01,886 glycopeptidepy/_c/structure/fragment.c:14749:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T00:18:01,886 14749 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-18T00:18:01,887 | ^ 2023-09-18T00:18:01,900 glycopeptidepy/_c/structure/fragment.c:14926:24: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T00:18:01,901 14926 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-18T00:18:01,902 | ^ 2023-09-18T00:18:38,795 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so 2023-09-18T00:18:38,956 building 'glycopeptidepy._c.structure.constants' extension 2023-09-18T00:18:38,957 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/constants.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.o 2023-09-18T00:18:44,966 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so 2023-09-18T00:18:45,070 building 'glycopeptidepy._c.structure.glycan' extension 2023-09-18T00:18:45,071 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/glycan.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.o 2023-09-18T00:19:08,077 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so 2023-09-18T00:19:08,210 building 'glycopeptidepy._c.structure.sequence_methods' extension 2023-09-18T00:19:08,210 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/sequence_methods.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.o 2023-09-18T00:19:08,871 glycopeptidepy/_c/structure/sequence_methods.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_16sequence_methods_add_modification’: 2023-09-18T00:19:08,885 glycopeptidepy/_c/structure/sequence_methods.c:14874:36: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-18T00:19:08,885 14874 | __pyx_t_7 = (__pyx_v_position_ >= __pyx_t_8); 2023-09-18T00:19:08,886 | ^~ 2023-09-18T00:19:29,077 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so 2023-09-18T00:19:29,203 building 'glycopeptidepy._c.structure.modification.rule' extension 2023-09-18T00:19:29,203 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T00:19:29,204 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/modification/rule.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.o 2023-09-18T00:19:41,634 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so 2023-09-18T00:19:41,753 building 'glycopeptidepy._c.structure.modification.modification' extension 2023-09-18T00:19:41,754 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/modification/modification.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.o 2023-09-18T00:19:49,739 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so 2023-09-18T00:19:49,851 building 'glycopeptidepy._c.structure.modification.source' extension 2023-09-18T00:19:49,852 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/modification/source.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.o 2023-09-18T00:19:57,881 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so 2023-09-18T00:19:57,998 building 'glycopeptidepy._c.structure.fragmentation_strategy.base' extension 2023-09-18T00:19:57,999 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:19:58,000 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/fragmentation_strategy/base.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.o 2023-09-18T00:20:07,086 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so 2023-09-18T00:20:07,202 building 'glycopeptidepy._c.structure.fragmentation_strategy.peptide' extension 2023-09-18T00:20:07,203 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o 2023-09-18T00:20:39,356 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so 2023-09-18T00:20:39,510 building 'glycopeptidepy._c.structure.fragmentation_strategy.glycan' extension 2023-09-18T00:20:39,510 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o 2023-09-18T00:20:40,255 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_fucosylate_extended’: 2023-09-18T00:20:40,268 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:14735:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2023-09-18T00:20:40,269 14735 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-09-18T00:20:40,270 | ^ 2023-09-18T00:20:40,282 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:14752:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2023-09-18T00:20:40,283 14752 | for (__pyx_t_9 = 1; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-09-18T00:20:40,284 | ^ 2023-09-18T00:20:40,419 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_n_glycan_stub_fragments’: 2023-09-18T00:20:40,437 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:19055:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-18T00:20:40,437 19055 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-09-18T00:20:40,438 | ^ 2023-09-18T00:20:40,460 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_o_glycan_stub_fragments’: 2023-09-18T00:20:40,478 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:19763:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-09-18T00:20:40,479 19763 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_15; __pyx_t_9+=1) { 2023-09-18T00:20:40,479 | ^ 2023-09-18T00:20:40,541 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_gag_linker_stub_fragments’: 2023-09-18T00:20:40,561 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:21706:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-09-18T00:20:40,562 21706 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_15; __pyx_t_9+=1) { 2023-09-18T00:20:40,563 | ^ 2023-09-18T00:21:18,818 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so 2023-09-18T00:21:18,978 building 'glycopeptidepy._c.algorithm' extension 2023-09-18T00:21:18,978 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/algorithm.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.o 2023-09-18T00:21:33,232 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so 2023-09-18T00:21:33,365 installing to build/bdist.linux-armv7l/wheel 2023-09-18T00:21:33,366 running install 2023-09-18T00:21:33,389 running install_lib 2023-09-18T00:21:33,397 creating build/bdist.linux-armv7l 2023-09-18T00:21:33,398 creating build/bdist.linux-armv7l/wheel 2023-09-18T00:21:33,399 creating build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T00:21:33,401 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T00:21:33,402 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/sequence_tree.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T00:21:33,404 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/collectiontools.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T00:21:33,406 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/memoize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T00:21:33,408 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/iterators.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T00:21:33,410 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T00:21:33,413 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T00:21:33,415 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T00:21:33,416 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/nextprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T00:21:33,418 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/mzid.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T00:21:33,420 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T00:21:33,423 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T00:21:33,424 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/peff.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T00:21:33,427 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/term.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T00:21:33,429 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T00:21:33,431 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T00:21:33,432 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T00:21:33,434 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T00:21:33,437 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/annotation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T00:21:33,439 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T00:21:33,441 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:33,442 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/cythonize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:33,444 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/compat.h -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:33,445 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:33,447 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:33,450 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:33,462 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:33,474 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/compat.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:33,476 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:33,478 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:33,480 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:33,482 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:33,492 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:33,499 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:33,502 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,503 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:21:33,504 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:21:33,535 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:21:33,537 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:21:33,560 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:21:33,569 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:21:33,596 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:21:33,632 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:21:33,635 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:21:33,637 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:21:33,639 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:21:33,649 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:21:33,651 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:21:33,652 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T00:21:33,655 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,674 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,677 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,694 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T00:21:33,695 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T00:21:33,709 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T00:21:33,710 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T00:21:33,723 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T00:21:33,725 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T00:21:33,727 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T00:21:33,735 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T00:21:33,737 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T00:21:33,753 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T00:21:33,760 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/target.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T00:21:33,768 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T00:21:33,770 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T00:21:33,778 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T00:21:33,789 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T00:21:33,791 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,807 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,808 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,810 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,828 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,830 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,832 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,860 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,862 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,864 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,867 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,869 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,904 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,924 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,934 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,954 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,956 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,963 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T00:21:33,966 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:33,980 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:33,988 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:34,006 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:34,007 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:34,009 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T00:21:34,018 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T00:21:34,019 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T00:21:34,021 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/terminal_group.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T00:21:34,023 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T00:21:34,025 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T00:21:34,027 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/parser.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T00:21:34,030 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T00:21:34,031 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T00:21:34,032 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T00:21:34,035 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T00:21:34,037 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T00:21:34,040 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/constants.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T00:21:34,042 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T00:21:34,043 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T00:21:34,044 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T00:21:34,046 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/unimod.json -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T00:21:34,073 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T00:21:34,075 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T00:21:34,078 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T00:21:34,080 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/source.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T00:21:34,082 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/descriptors.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T00:21:34,084 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T00:21:34,086 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/target.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T00:21:34,088 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T00:21:34,090 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T00:21:34,092 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/rule.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T00:21:34,095 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/glycosylation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T00:21:34,097 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T00:21:34,100 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T00:21:34,101 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T00:21:34,104 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T00:21:34,106 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T00:21:34,109 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T00:21:34,111 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/implementation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T00:21:34,113 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T00:21:34,115 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T00:21:34,117 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T00:21:34,120 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/algorithm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T00:21:34,123 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T00:21:34,124 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T00:21:34,126 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T00:21:34,129 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/common.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T00:21:34,130 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T00:21:34,132 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_algorithms.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T00:21:34,134 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T00:21:34,136 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T00:21:34,138 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T00:21:34,140 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T00:21:34,143 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T00:21:34,145 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T00:21:34,147 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T00:21:34,148 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T00:21:34,150 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_fragmentation_strategy.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T00:21:34,152 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T00:21:34,154 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/version.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T00:21:34,156 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T00:21:34,158 running install_egg_info 2023-09-18T00:21:34,171 Copying glycopeptidepy.egg-info to build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.16-py3.11.egg-info 2023-09-18T00:21:34,184 running install_scripts 2023-09-18T00:21:34,231 creating build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.16.dist-info/WHEEL 2023-09-18T00:21:34,234 creating '/tmp/pip-wheel-j7ga1ngg/.tmp-p6jpevwu/glycopeptidepy-0.0.16-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-18T00:21:34,237 adding 'glycopeptidepy/__init__.py' 2023-09-18T00:21:34,239 adding 'glycopeptidepy/algorithm.py' 2023-09-18T00:21:34,242 adding 'glycopeptidepy/enzyme.py' 2023-09-18T00:21:34,243 adding 'glycopeptidepy/version.py' 2023-09-18T00:21:34,245 adding 'glycopeptidepy/_c/__init__.py' 2023-09-18T00:21:34,301 adding 'glycopeptidepy/_c/algorithm.c' 2023-09-18T00:21:34,486 adding 'glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T00:21:34,493 adding 'glycopeptidepy/_c/algorithm.pyx' 2023-09-18T00:21:34,530 adding 'glycopeptidepy/_c/collectiontools.c' 2023-09-18T00:21:34,605 adding 'glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T00:21:34,609 adding 'glycopeptidepy/_c/collectiontools.pxd' 2023-09-18T00:21:34,610 adding 'glycopeptidepy/_c/collectiontools.pyx' 2023-09-18T00:21:34,612 adding 'glycopeptidepy/_c/compat.h' 2023-09-18T00:21:34,613 adding 'glycopeptidepy/_c/compat.pxd' 2023-09-18T00:21:34,679 adding 'glycopeptidepy/_c/count_table.c' 2023-09-18T00:21:34,836 adding 'glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T00:21:34,843 adding 'glycopeptidepy/_c/count_table.pxd' 2023-09-18T00:21:34,846 adding 'glycopeptidepy/_c/count_table.pyx' 2023-09-18T00:21:34,848 adding 'glycopeptidepy/_c/cythonize.py' 2023-09-18T00:21:34,891 adding 'glycopeptidepy/_c/parser.c' 2023-09-18T00:21:34,975 adding 'glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T00:21:34,979 adding 'glycopeptidepy/_c/parser.pxd' 2023-09-18T00:21:34,981 adding 'glycopeptidepy/_c/parser.pyx' 2023-09-18T00:21:34,983 adding 'glycopeptidepy/_c/structure/__init__.py' 2023-09-18T00:21:35,058 adding 'glycopeptidepy/_c/structure/base.c' 2023-09-18T00:21:35,266 adding 'glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T00:21:35,275 adding 'glycopeptidepy/_c/structure/base.pxd' 2023-09-18T00:21:35,277 adding 'glycopeptidepy/_c/structure/base.pyx' 2023-09-18T00:21:35,309 adding 'glycopeptidepy/_c/structure/constants.c' 2023-09-18T00:21:35,379 adding 'glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T00:21:35,383 adding 'glycopeptidepy/_c/structure/constants.pxd' 2023-09-18T00:21:35,384 adding 'glycopeptidepy/_c/structure/constants.pyx' 2023-09-18T00:21:35,494 adding 'glycopeptidepy/_c/structure/fragment.c' 2023-09-18T00:21:35,805 adding 'glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T00:21:35,818 adding 'glycopeptidepy/_c/structure/fragment.pxd' 2023-09-18T00:21:35,821 adding 'glycopeptidepy/_c/structure/fragment.pyx' 2023-09-18T00:21:35,896 adding 'glycopeptidepy/_c/structure/glycan.c' 2023-09-18T00:21:36,111 adding 'glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T00:21:36,122 adding 'glycopeptidepy/_c/structure/glycan.pxd' 2023-09-18T00:21:36,125 adding 'glycopeptidepy/_c/structure/glycan.pyx' 2023-09-18T00:21:36,199 adding 'glycopeptidepy/_c/structure/sequence_methods.c' 2023-09-18T00:21:36,391 adding 'glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T00:21:36,399 adding 'glycopeptidepy/_c/structure/sequence_methods.pxd' 2023-09-18T00:21:36,402 adding 'glycopeptidepy/_c/structure/sequence_methods.pyx' 2023-09-18T00:21:36,404 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py' 2023-09-18T00:21:36,446 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.c' 2023-09-18T00:21:36,538 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T00:21:36,542 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd' 2023-09-18T00:21:36,544 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx' 2023-09-18T00:21:36,657 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c' 2023-09-18T00:21:36,978 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T00:21:36,992 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd' 2023-09-18T00:21:36,996 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx' 2023-09-18T00:21:37,110 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c' 2023-09-18T00:21:37,384 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T00:21:37,396 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd' 2023-09-18T00:21:37,399 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx' 2023-09-18T00:21:37,401 adding 'glycopeptidepy/_c/structure/modification/__init__.py' 2023-09-18T00:21:37,441 adding 'glycopeptidepy/_c/structure/modification/modification.c' 2023-09-18T00:21:37,530 adding 'glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T00:21:37,534 adding 'glycopeptidepy/_c/structure/modification/modification.pxd' 2023-09-18T00:21:37,536 adding 'glycopeptidepy/_c/structure/modification/modification.pyx' 2023-09-18T00:21:37,588 adding 'glycopeptidepy/_c/structure/modification/rule.c' 2023-09-18T00:21:37,721 adding 'glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T00:21:37,727 adding 'glycopeptidepy/_c/structure/modification/rule.pxd' 2023-09-18T00:21:37,728 adding 'glycopeptidepy/_c/structure/modification/rule.pyx' 2023-09-18T00:21:37,768 adding 'glycopeptidepy/_c/structure/modification/source.c' 2023-09-18T00:21:37,856 adding 'glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T00:21:37,860 adding 'glycopeptidepy/_c/structure/modification/source.pxd' 2023-09-18T00:21:37,861 adding 'glycopeptidepy/_c/structure/modification/source.pyx' 2023-09-18T00:21:37,862 adding 'glycopeptidepy/_c/structure/modification/target.pyx' 2023-09-18T00:21:37,864 adding 'glycopeptidepy/io/__init__.py' 2023-09-18T00:21:37,865 adding 'glycopeptidepy/io/annotation.py' 2023-09-18T00:21:37,869 adding 'glycopeptidepy/io/fasta.py' 2023-09-18T00:21:37,871 adding 'glycopeptidepy/io/mzid.py' 2023-09-18T00:21:37,872 adding 'glycopeptidepy/io/nextprot.py' 2023-09-18T00:21:37,875 adding 'glycopeptidepy/io/uniprot.py' 2023-09-18T00:21:37,876 adding 'glycopeptidepy/io/utils.py' 2023-09-18T00:21:37,877 adding 'glycopeptidepy/io/cv/__init__.py' 2023-09-18T00:21:37,879 adding 'glycopeptidepy/io/cv/peff.py' 2023-09-18T00:21:37,881 adding 'glycopeptidepy/io/cv/term.py' 2023-09-18T00:21:37,882 adding 'glycopeptidepy/io/cv/uniprot_ptm.py' 2023-09-18T00:21:37,884 adding 'glycopeptidepy/structure/__init__.py' 2023-09-18T00:21:37,885 adding 'glycopeptidepy/structure/base.py' 2023-09-18T00:21:37,886 adding 'glycopeptidepy/structure/composition.py' 2023-09-18T00:21:37,887 adding 'glycopeptidepy/structure/constants.py' 2023-09-18T00:21:37,890 adding 'glycopeptidepy/structure/fragment.py' 2023-09-18T00:21:37,892 adding 'glycopeptidepy/structure/glycan.py' 2023-09-18T00:21:37,894 adding 'glycopeptidepy/structure/parser.py' 2023-09-18T00:21:37,895 adding 'glycopeptidepy/structure/residue.py' 2023-09-18T00:21:37,897 adding 'glycopeptidepy/structure/sequence_composition.py' 2023-09-18T00:21:37,898 adding 'glycopeptidepy/structure/terminal_group.py' 2023-09-18T00:21:37,900 adding 'glycopeptidepy/structure/fragmentation_strategy/__init__.py' 2023-09-18T00:21:37,901 adding 'glycopeptidepy/structure/fragmentation_strategy/base.py' 2023-09-18T00:21:37,906 adding 'glycopeptidepy/structure/fragmentation_strategy/glycan.py' 2023-09-18T00:21:37,908 adding 'glycopeptidepy/structure/fragmentation_strategy/peptide.py' 2023-09-18T00:21:37,910 adding 'glycopeptidepy/structure/modification/__init__.py' 2023-09-18T00:21:37,911 adding 'glycopeptidepy/structure/modification/descriptors.py' 2023-09-18T00:21:37,913 adding 'glycopeptidepy/structure/modification/glycosylation.py' 2023-09-18T00:21:37,915 adding 'glycopeptidepy/structure/modification/modification.py' 2023-09-18T00:21:37,918 adding 'glycopeptidepy/structure/modification/rule.py' 2023-09-18T00:21:37,920 adding 'glycopeptidepy/structure/modification/source.py' 2023-09-18T00:21:37,922 adding 'glycopeptidepy/structure/modification/target.py' 2023-09-18T00:21:37,923 adding 'glycopeptidepy/structure/modification/utils.py' 2023-09-18T00:21:37,925 adding 'glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv' 2023-09-18T00:21:37,926 adding 'glycopeptidepy/structure/modification/data/__init__.py' 2023-09-18T00:21:37,927 adding 'glycopeptidepy/structure/modification/data/patch_unimod.py' 2023-09-18T00:21:37,992 adding 'glycopeptidepy/structure/modification/data/unimod.json' 2023-09-18T00:21:38,009 adding 'glycopeptidepy/structure/modification/data/unimod.py' 2023-09-18T00:21:38,011 adding 'glycopeptidepy/structure/sequence/__init__.py' 2023-09-18T00:21:38,013 adding 'glycopeptidepy/structure/sequence/base.py' 2023-09-18T00:21:38,015 adding 'glycopeptidepy/structure/sequence/glycosylated_sequence.py' 2023-09-18T00:21:38,016 adding 'glycopeptidepy/structure/sequence/implementation.py' 2023-09-18T00:21:38,018 adding 'glycopeptidepy/structure/sequence/mutable_sequence.py' 2023-09-18T00:21:38,020 adding 'glycopeptidepy/test/__init__.py' 2023-09-18T00:21:38,021 adding 'glycopeptidepy/test/common.py' 2023-09-18T00:21:38,022 adding 'glycopeptidepy/test/test_algorithms.py' 2023-09-18T00:21:38,023 adding 'glycopeptidepy/test/test_enzyme.py' 2023-09-18T00:21:38,024 adding 'glycopeptidepy/test/test_fasta.py' 2023-09-18T00:21:38,026 adding 'glycopeptidepy/test/test_fragment.py' 2023-09-18T00:21:38,027 adding 'glycopeptidepy/test/test_fragmentation_strategy.py' 2023-09-18T00:21:38,028 adding 'glycopeptidepy/test/test_intervals.py' 2023-09-18T00:21:38,029 adding 'glycopeptidepy/test/test_modification.py' 2023-09-18T00:21:38,030 adding 'glycopeptidepy/test/test_residue.py' 2023-09-18T00:21:38,032 adding 'glycopeptidepy/test/test_sequence.py' 2023-09-18T00:21:38,033 adding 'glycopeptidepy/test/test_sequence_composition.py' 2023-09-18T00:21:38,034 adding 'glycopeptidepy/test/test_uniprot.py' 2023-09-18T00:21:38,035 adding 'glycopeptidepy/test/test_utils.py' 2023-09-18T00:21:38,037 adding 'glycopeptidepy/utils/__init__.py' 2023-09-18T00:21:38,038 adding 'glycopeptidepy/utils/collectiontools.py' 2023-09-18T00:21:38,041 adding 'glycopeptidepy/utils/intervals.py' 2023-09-18T00:21:38,042 adding 'glycopeptidepy/utils/iterators.py' 2023-09-18T00:21:38,043 adding 'glycopeptidepy/utils/memoize.py' 2023-09-18T00:21:38,045 adding 'glycopeptidepy/utils/sequence_tree.py' 2023-09-18T00:21:38,047 adding 'glycopeptidepy-0.0.16.dist-info/METADATA' 2023-09-18T00:21:38,048 adding 'glycopeptidepy-0.0.16.dist-info/WHEEL' 2023-09-18T00:21:38,049 adding 'glycopeptidepy-0.0.16.dist-info/top_level.txt' 2023-09-18T00:21:38,051 adding 'glycopeptidepy-0.0.16.dist-info/RECORD' 2023-09-18T00:21:38,117 removing build/bdist.linux-armv7l/wheel 2023-09-18T00:21:38,314 Building wheel for glycopeptidepy (pyproject.toml): finished with status 'done' 2023-09-18T00:21:38,482 Created wheel for glycopeptidepy: filename=glycopeptidepy-0.0.16-cp311-cp311-linux_armv7l.whl size=6424651 sha256=3b6948413d65d092321b3524a9d462be03054328a3a5f7a59b38b5bc21f7b959 2023-09-18T00:21:38,483 Stored in directory: /tmp/pip-ephem-wheel-cache-566jnzkn/wheels/75/93/71/ddf9adb8a550fa63dc8c28655052d61ff967edac5874833966 2023-09-18T00:21:38,498 Successfully built glycopeptidepy 2023-09-18T00:21:38,672 Removed build tracker: '/tmp/pip-build-tracker-a7plntg1'