2023-09-18T11:45:33,997 Created temporary directory: /tmp/pip-build-tracker-mn3w_gec 2023-09-18T11:45:33,998 Initialized build tracking at /tmp/pip-build-tracker-mn3w_gec 2023-09-18T11:45:33,998 Created build tracker: /tmp/pip-build-tracker-mn3w_gec 2023-09-18T11:45:33,999 Entered build tracker: /tmp/pip-build-tracker-mn3w_gec 2023-09-18T11:45:33,999 Created temporary directory: /tmp/pip-wheel-e9evzbo3 2023-09-18T11:45:34,002 Created temporary directory: /tmp/pip-ephem-wheel-cache-947puk0v 2023-09-18T11:45:34,024 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-18T11:45:34,028 2 location(s) to search for versions of glycopeptidepy: 2023-09-18T11:45:34,028 * https://pypi.org/simple/glycopeptidepy/ 2023-09-18T11:45:34,028 * https://www.piwheels.org/simple/glycopeptidepy/ 2023-09-18T11:45:34,029 Fetching project page and analyzing links: https://pypi.org/simple/glycopeptidepy/ 2023-09-18T11:45:34,029 Getting page https://pypi.org/simple/glycopeptidepy/ 2023-09-18T11:45:34,031 Found index url https://pypi.org/simple/ 2023-09-18T11:45:34,257 Fetched page https://pypi.org/simple/glycopeptidepy/ as application/vnd.pypi.simple.v1+json 2023-09-18T11:45:34,284 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c5/11/eb274d11f4af75f9ac7af58e6ebdc583aea6b01dded7b435087941f16dab/glycopeptidepy-0.0.8-py2.7-win-amd64.egg (from https://pypi.org/simple/glycopeptidepy/) 2023-09-18T11:45:34,285 Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/9e/b8/7b13b5d9a0514c91b0a75ec641e8ccf20fa82ce07baabeff879d3d77a123/glycopeptidepy-0.0.9-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/) 2023-09-18T11:45:34,285 Skipping link: No binaries permitted for glycopeptidepy: 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https://pypi.org/simple/glycopeptidepy/ 2023-09-18T11:45:38,250 Given no hashes to check 1 links for project 'glycopeptidepy': discarding no candidates 2023-09-18T11:45:38,268 Collecting glycopeptidepy==0.0.17 2023-09-18T11:45:38,270 Created temporary directory: /tmp/pip-unpack-whw80bps 2023-09-18T11:45:39,168 Downloading glycopeptidepy-0.0.17.tar.gz (1.3 MB) 2023-09-18T11:45:40,336 Added glycopeptidepy==0.0.17 from https://files.pythonhosted.org/packages/fd/67/4a94623ded52414037125c692fe8e0fe4ed4bb9b5e206fe8fdaccd609766/glycopeptidepy-0.0.17.tar.gz to build tracker '/tmp/pip-build-tracker-mn3w_gec' 2023-09-18T11:45:40,341 Created temporary directory: /tmp/pip-build-env-qiepnd0g 2023-09-18T11:45:40,345 Installing build dependencies: started 2023-09-18T11:45:40,347 Running command pip subprocess to install build dependencies 2023-09-18T11:45:41,561 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-18T11:45:42,080 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-18T11:45:50,753 Collecting setuptools 2023-09-18T11:45:50,754 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-18T11:45:50,760 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-18T11:45:57,480 Collecting wheel 2023-09-18T11:46:04,215 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-18T11:46:07,706 Collecting Cython 2023-09-18T11:46:07,707 Obtaining dependency information for Cython from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata 2023-09-18T11:46:07,713 Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-18T11:46:07,996 Collecting glypy 2023-09-18T11:46:08,762 Downloading https://www.piwheels.org/simple/glypy/glypy-1.0.3-cp311-cp311-linux_armv7l.whl (1.7 MB) 2023-09-18T11:46:09,453 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 2.5 MB/s eta 0:00:00 2023-09-18T11:46:09,828 Collecting hjson (from glypy) 2023-09-18T11:46:09,847 Downloading https://www.piwheels.org/simple/hjson/hjson-3.1.0-py3-none-any.whl (54 kB) 2023-09-18T11:46:09,863 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.0/54.0 kB 5.3 MB/s eta 0:00:00 2023-09-18T11:46:09,963 Collecting six (from glypy) 2023-09-18T11:46:09,977 Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB) 2023-09-18T11:46:10,008 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-18T11:46:10,044 Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB) 2023-09-18T11:46:12,572 Installing collected packages: hjson, wheel, six, setuptools, Cython, glypy 2023-09-18T11:46:12,807 Creating /tmp/pip-build-env-qiepnd0g/overlay/local/bin 2023-09-18T11:46:12,808 changing mode of /tmp/pip-build-env-qiepnd0g/overlay/local/bin/hjson to 755 2023-09-18T11:46:13,030 changing mode of /tmp/pip-build-env-qiepnd0g/overlay/local/bin/wheel to 755 2023-09-18T11:46:18,060 changing mode of /tmp/pip-build-env-qiepnd0g/overlay/local/bin/cygdb to 755 2023-09-18T11:46:18,062 changing mode of /tmp/pip-build-env-qiepnd0g/overlay/local/bin/cython to 755 2023-09-18T11:46:18,064 changing mode of /tmp/pip-build-env-qiepnd0g/overlay/local/bin/cythonize to 755 2023-09-18T11:46:19,381 Successfully installed Cython-3.0.2 glypy-1.0.3 hjson-3.1.0 setuptools-68.2.2 six-1.16.0 wheel-0.41.2 2023-09-18T11:46:19,975 Installing build dependencies: finished with status 'done' 2023-09-18T11:46:19,988 Getting requirements to build wheel: started 2023-09-18T11:46:19,990 Running command Getting requirements to build wheel 2023-09-18T11:46:24,500 /tmp/pip-build-env-qiepnd0g/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-e9evzbo3/glycopeptidepy_cdcdd10546604f2eb1bb8b8ab7bc4b43/glycopeptidepy/_c/algorithm.pyx 2023-09-18T11:46:24,500 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:46:25,757 /tmp/pip-build-env-qiepnd0g/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-e9evzbo3/glycopeptidepy_cdcdd10546604f2eb1bb8b8ab7bc4b43/glycopeptidepy/_c/collectiontools.pxd 2023-09-18T11:46:25,758 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:46:27,556 /tmp/pip-build-env-qiepnd0g/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-e9evzbo3/glycopeptidepy_cdcdd10546604f2eb1bb8b8ab7bc4b43/glycopeptidepy/_c/count_table.pxd 2023-09-18T11:46:27,557 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:46:29,028 warning: glycopeptidepy/_c/count_table.pyx:15:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:29,045 warning: glycopeptidepy/_c/count_table.pyx:102:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:29,065 warning: glycopeptidepy/_c/count_table.pyx:184:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:29,068 warning: glycopeptidepy/_c/count_table.pyx:195:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:30,642 /tmp/pip-build-env-qiepnd0g/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-e9evzbo3/glycopeptidepy_cdcdd10546604f2eb1bb8b8ab7bc4b43/glycopeptidepy/_c/parser.pxd 2023-09-18T11:46:30,642 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:46:32,515 warning: glycopeptidepy/_c/parser.pyx:224:23: Unreachable code 2023-09-18T11:46:32,837 /tmp/pip-build-env-qiepnd0g/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-e9evzbo3/glycopeptidepy_cdcdd10546604f2eb1bb8b8ab7bc4b43/glycopeptidepy/_c/structure/base.pxd 2023-09-18T11:46:32,837 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:46:32,848 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:32,848 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:32,849 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:32,850 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:32,918 warning: glycopeptidepy/_c/structure/base.pyx:11:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:32,920 warning: glycopeptidepy/_c/structure/base.pyx:17:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:34,429 /tmp/pip-build-env-qiepnd0g/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-e9evzbo3/glycopeptidepy_cdcdd10546604f2eb1bb8b8ab7bc4b43/glycopeptidepy/_c/structure/constants.pxd 2023-09-18T11:46:34,429 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:46:35,070 /tmp/pip-build-env-qiepnd0g/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-e9evzbo3/glycopeptidepy_cdcdd10546604f2eb1bb8b8ab7bc4b43/glycopeptidepy/_c/structure/fragment.pxd 2023-09-18T11:46:35,070 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:46:36,652 warning: glycopeptidepy/_c/structure/fragment.pyx:41:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:36,653 warning: glycopeptidepy/_c/structure/fragment.pyx:42:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:37,057 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:37,057 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:37,058 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:37,059 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:38,776 /tmp/pip-build-env-qiepnd0g/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-e9evzbo3/glycopeptidepy_cdcdd10546604f2eb1bb8b8ab7bc4b43/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd 2023-09-18T11:46:38,777 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:46:40,446 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:40,446 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:40,447 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:40,448 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:40,765 /tmp/pip-build-env-qiepnd0g/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-e9evzbo3/glycopeptidepy_cdcdd10546604f2eb1bb8b8ab7bc4b43/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd 2023-09-18T11:46:40,766 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:46:43,739 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:43,771 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:43,773 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:43,774 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:46,291 /tmp/pip-build-env-qiepnd0g/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-e9evzbo3/glycopeptidepy_cdcdd10546604f2eb1bb8b8ab7bc4b43/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd 2023-09-18T11:46:46,291 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:46:47,814 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:47,814 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:47,815 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:47,815 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:49,689 /tmp/pip-build-env-qiepnd0g/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-e9evzbo3/glycopeptidepy_cdcdd10546604f2eb1bb8b8ab7bc4b43/glycopeptidepy/_c/structure/glycan.pxd 2023-09-18T11:46:49,690 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:46:49,774 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:49,775 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:49,776 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:49,776 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:51,530 /tmp/pip-build-env-qiepnd0g/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-e9evzbo3/glycopeptidepy_cdcdd10546604f2eb1bb8b8ab7bc4b43/glycopeptidepy/_c/structure/modification/modification.pxd 2023-09-18T11:46:51,534 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:46:51,549 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:51,550 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:51,551 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:51,552 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:51,932 /tmp/pip-build-env-qiepnd0g/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-e9evzbo3/glycopeptidepy_cdcdd10546604f2eb1bb8b8ab7bc4b43/glycopeptidepy/_c/structure/modification/rule.pxd 2023-09-18T11:46:51,933 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:46:51,987 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:51,988 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:51,989 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:51,989 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:52,678 /tmp/pip-build-env-qiepnd0g/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-e9evzbo3/glycopeptidepy_cdcdd10546604f2eb1bb8b8ab7bc4b43/glycopeptidepy/_c/structure/modification/source.pxd 2023-09-18T11:46:52,678 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:46:52,745 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:52,745 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:52,746 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:52,747 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:53,569 /tmp/pip-build-env-qiepnd0g/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-e9evzbo3/glycopeptidepy_cdcdd10546604f2eb1bb8b8ab7bc4b43/glycopeptidepy/_c/structure/sequence_methods.pxd 2023-09-18T11:46:53,569 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:46:53,628 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:53,629 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:53,630 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:53,630 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:46:56,556 Compiling glycopeptidepy/_c/collectiontools.pyx because it changed. 2023-09-18T11:46:56,558 Compiling glycopeptidepy/_c/count_table.pyx because it changed. 2023-09-18T11:46:56,559 Compiling glycopeptidepy/_c/parser.pyx because it changed. 2023-09-18T11:46:56,560 Compiling glycopeptidepy/_c/structure/base.pyx because it changed. 2023-09-18T11:46:56,560 Compiling glycopeptidepy/_c/structure/fragment.pyx because it changed. 2023-09-18T11:46:56,561 Compiling glycopeptidepy/_c/structure/constants.pyx because it changed. 2023-09-18T11:46:56,561 Compiling glycopeptidepy/_c/structure/glycan.pyx because it changed. 2023-09-18T11:46:56,562 Compiling glycopeptidepy/_c/structure/sequence_methods.pyx because it changed. 2023-09-18T11:46:56,562 Compiling glycopeptidepy/_c/structure/modification/rule.pyx because it changed. 2023-09-18T11:46:56,563 Compiling glycopeptidepy/_c/structure/modification/modification.pyx because it changed. 2023-09-18T11:46:56,563 Compiling glycopeptidepy/_c/structure/modification/source.pyx because it changed. 2023-09-18T11:46:56,564 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it changed. 2023-09-18T11:46:56,565 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it changed. 2023-09-18T11:46:56,565 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it changed. 2023-09-18T11:46:56,566 Compiling glycopeptidepy/_c/algorithm.pyx because it changed. 2023-09-18T11:46:56,566 [ 1/15] Cythonizing glycopeptidepy/_c/algorithm.pyx 2023-09-18T11:46:56,567 [ 2/15] Cythonizing glycopeptidepy/_c/collectiontools.pyx 2023-09-18T11:46:56,567 [ 3/15] Cythonizing glycopeptidepy/_c/count_table.pyx 2023-09-18T11:46:56,568 [ 4/15] Cythonizing glycopeptidepy/_c/parser.pyx 2023-09-18T11:46:56,568 [ 5/15] Cythonizing glycopeptidepy/_c/structure/base.pyx 2023-09-18T11:46:56,569 [ 6/15] Cythonizing glycopeptidepy/_c/structure/constants.pyx 2023-09-18T11:46:56,569 [ 7/15] Cythonizing glycopeptidepy/_c/structure/fragment.pyx 2023-09-18T11:46:56,570 [ 8/15] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx 2023-09-18T11:46:56,571 [ 9/15] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx 2023-09-18T11:46:56,571 [10/15] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx 2023-09-18T11:46:56,571 [11/15] Cythonizing glycopeptidepy/_c/structure/glycan.pyx 2023-09-18T11:46:56,572 [12/15] Cythonizing glycopeptidepy/_c/structure/modification/modification.pyx 2023-09-18T11:46:56,572 [13/15] Cythonizing glycopeptidepy/_c/structure/modification/rule.pyx 2023-09-18T11:46:56,573 [14/15] Cythonizing glycopeptidepy/_c/structure/modification/source.pyx 2023-09-18T11:46:56,573 [15/15] Cythonizing glycopeptidepy/_c/structure/sequence_methods.pyx 2023-09-18T11:46:56,641 running egg_info 2023-09-18T11:46:56,647 writing glycopeptidepy.egg-info/PKG-INFO 2023-09-18T11:46:56,650 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2023-09-18T11:46:56,652 writing requirements to glycopeptidepy.egg-info/requires.txt 2023-09-18T11:46:56,654 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2023-09-18T11:46:56,699 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T11:46:56,705 reading manifest template 'MANIFEST.in' 2023-09-18T11:46:56,706 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-18T11:46:56,707 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-18T11:46:56,883 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T11:46:57,202 Getting requirements to build wheel: finished with status 'done' 2023-09-18T11:46:57,214 Created temporary directory: /tmp/pip-modern-metadata-9ztndsb2 2023-09-18T11:46:57,217 Preparing metadata (pyproject.toml): started 2023-09-18T11:46:57,218 Running command Preparing metadata (pyproject.toml) 2023-09-18T11:47:00,101 running dist_info 2023-09-18T11:47:00,120 creating /tmp/pip-modern-metadata-9ztndsb2/glycopeptidepy.egg-info 2023-09-18T11:47:00,126 writing /tmp/pip-modern-metadata-9ztndsb2/glycopeptidepy.egg-info/PKG-INFO 2023-09-18T11:47:00,129 writing dependency_links to /tmp/pip-modern-metadata-9ztndsb2/glycopeptidepy.egg-info/dependency_links.txt 2023-09-18T11:47:00,131 writing requirements to /tmp/pip-modern-metadata-9ztndsb2/glycopeptidepy.egg-info/requires.txt 2023-09-18T11:47:00,132 writing top-level names to /tmp/pip-modern-metadata-9ztndsb2/glycopeptidepy.egg-info/top_level.txt 2023-09-18T11:47:00,134 writing manifest file '/tmp/pip-modern-metadata-9ztndsb2/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T11:47:00,166 reading manifest file '/tmp/pip-modern-metadata-9ztndsb2/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T11:47:00,168 reading manifest template 'MANIFEST.in' 2023-09-18T11:47:00,169 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-18T11:47:00,170 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-18T11:47:00,334 writing manifest file '/tmp/pip-modern-metadata-9ztndsb2/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T11:47:00,335 creating '/tmp/pip-modern-metadata-9ztndsb2/glycopeptidepy-0.0.17.dist-info' 2023-09-18T11:47:00,558 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-18T11:47:00,562 Source in /tmp/pip-wheel-e9evzbo3/glycopeptidepy_cdcdd10546604f2eb1bb8b8ab7bc4b43 has version 0.0.17, which satisfies requirement glycopeptidepy==0.0.17 from https://files.pythonhosted.org/packages/fd/67/4a94623ded52414037125c692fe8e0fe4ed4bb9b5e206fe8fdaccd609766/glycopeptidepy-0.0.17.tar.gz 2023-09-18T11:47:00,564 Removed glycopeptidepy==0.0.17 from https://files.pythonhosted.org/packages/fd/67/4a94623ded52414037125c692fe8e0fe4ed4bb9b5e206fe8fdaccd609766/glycopeptidepy-0.0.17.tar.gz from build tracker '/tmp/pip-build-tracker-mn3w_gec' 2023-09-18T11:47:00,567 Created temporary directory: /tmp/pip-unpack-cl5ctrm9 2023-09-18T11:47:00,568 Created temporary directory: /tmp/pip-unpack-4u5k5zwc 2023-09-18T11:47:00,578 Building wheels for collected packages: glycopeptidepy 2023-09-18T11:47:00,582 Created temporary directory: /tmp/pip-wheel-zciuvqpk 2023-09-18T11:47:00,582 Destination directory: /tmp/pip-wheel-zciuvqpk 2023-09-18T11:47:00,584 Building wheel for glycopeptidepy (pyproject.toml): started 2023-09-18T11:47:00,586 Running command Building wheel for glycopeptidepy (pyproject.toml) 2023-09-18T11:47:03,470 running bdist_wheel 2023-09-18T11:47:03,506 running build 2023-09-18T11:47:03,506 running build_py 2023-09-18T11:47:03,515 creating build 2023-09-18T11:47:03,515 creating build/lib.linux-armv7l-cpython-311 2023-09-18T11:47:03,516 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T11:47:03,517 copying glycopeptidepy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T11:47:03,519 copying glycopeptidepy/version.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T11:47:03,521 copying glycopeptidepy/algorithm.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T11:47:03,523 copying glycopeptidepy/enzyme.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T11:47:03,526 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T11:47:03,527 copying glycopeptidepy/io/mzid.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T11:47:03,529 copying glycopeptidepy/io/uniprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T11:47:03,532 copying glycopeptidepy/io/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T11:47:03,534 copying glycopeptidepy/io/annotation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T11:47:03,536 copying glycopeptidepy/io/utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T11:47:03,538 copying glycopeptidepy/io/fasta.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T11:47:03,541 copying glycopeptidepy/io/nextprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T11:47:03,543 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:47:03,544 copying glycopeptidepy/structure/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:47:03,546 copying glycopeptidepy/structure/composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:47:03,548 copying glycopeptidepy/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:47:03,549 copying glycopeptidepy/structure/glycan.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:47:03,552 copying glycopeptidepy/structure/fragment.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:47:03,555 copying glycopeptidepy/structure/terminal_group.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:47:03,556 copying glycopeptidepy/structure/residue.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:47:03,559 copying glycopeptidepy/structure/constants.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:47:03,560 copying glycopeptidepy/structure/parser.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:47:03,562 copying glycopeptidepy/structure/sequence_composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:47:03,565 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:47:03,566 copying glycopeptidepy/_c/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:47:03,568 copying glycopeptidepy/_c/cythonize.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:47:03,571 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T11:47:03,572 copying glycopeptidepy/utils/iterators.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T11:47:03,573 copying glycopeptidepy/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T11:47:03,575 copying glycopeptidepy/utils/memoize.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T11:47:03,577 copying glycopeptidepy/utils/sequence_tree.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T11:47:03,579 copying glycopeptidepy/utils/intervals.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T11:47:03,581 copying glycopeptidepy/utils/collectiontools.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T11:47:03,584 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:47:03,585 copying glycopeptidepy/test/test_intervals.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:47:03,586 copying glycopeptidepy/test/test_fragment.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:47:03,588 copying glycopeptidepy/test/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:47:03,590 copying glycopeptidepy/test/test_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:47:03,592 copying glycopeptidepy/test/test_modification.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:47:03,594 copying glycopeptidepy/test/test_enzyme.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:47:03,596 copying glycopeptidepy/test/common.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:47:03,598 copying glycopeptidepy/test/test_residue.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:47:03,599 copying glycopeptidepy/test/test_sequence_composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:47:03,601 copying glycopeptidepy/test/test_fasta.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:47:03,604 copying glycopeptidepy/test/test_uniprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:47:03,605 copying glycopeptidepy/test/test_utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:47:03,607 copying glycopeptidepy/test/test_algorithms.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:47:03,609 copying glycopeptidepy/test/test_fragmentation_strategy.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:47:03,611 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T11:47:03,612 copying glycopeptidepy/io/cv/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T11:47:03,614 copying glycopeptidepy/io/cv/term.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T11:47:03,616 copying glycopeptidepy/io/cv/uniprot_ptm.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T11:47:03,618 copying glycopeptidepy/io/cv/peff.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T11:47:03,620 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T11:47:03,621 copying glycopeptidepy/structure/sequence/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T11:47:03,624 copying glycopeptidepy/structure/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T11:47:03,626 copying glycopeptidepy/structure/sequence/implementation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T11:47:03,628 copying glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T11:47:03,630 copying glycopeptidepy/structure/sequence/mutable_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T11:47:03,633 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T11:47:03,634 copying glycopeptidepy/structure/modification/rule.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T11:47:03,636 copying glycopeptidepy/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T11:47:03,638 copying glycopeptidepy/structure/modification/descriptors.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T11:47:03,639 copying glycopeptidepy/structure/modification/modification.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T11:47:03,641 copying glycopeptidepy/structure/modification/source.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T11:47:03,644 copying glycopeptidepy/structure/modification/utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T11:47:03,645 copying glycopeptidepy/structure/modification/target.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T11:47:03,647 copying glycopeptidepy/structure/modification/glycosylation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T11:47:03,650 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:47:03,651 copying glycopeptidepy/structure/fragmentation_strategy/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:47:03,653 copying glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:47:03,655 copying glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:47:03,658 copying glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:47:03,661 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T11:47:03,662 copying glycopeptidepy/structure/modification/data/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T11:47:03,664 copying glycopeptidepy/structure/modification/data/unimod.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T11:47:03,666 copying glycopeptidepy/structure/modification/data/patch_unimod.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T11:47:03,669 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:47:03,669 copying glycopeptidepy/_c/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:47:03,672 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:47:03,673 copying glycopeptidepy/_c/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:47:03,675 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:47:03,676 copying glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:47:03,677 running egg_info 2023-09-18T11:47:03,683 writing glycopeptidepy.egg-info/PKG-INFO 2023-09-18T11:47:03,685 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2023-09-18T11:47:03,688 writing requirements to glycopeptidepy.egg-info/requires.txt 2023-09-18T11:47:03,689 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2023-09-18T11:47:03,710 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T11:47:03,714 reading manifest template 'MANIFEST.in' 2023-09-18T11:47:03,715 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-18T11:47:03,716 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-18T11:47:03,884 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T11:47:03,891 copying glycopeptidepy/_c/algorithm.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:47:03,904 copying glycopeptidepy/_c/algorithm.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:47:03,906 copying glycopeptidepy/_c/collectiontools.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:47:03,914 copying glycopeptidepy/_c/collectiontools.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:47:03,915 copying glycopeptidepy/_c/collectiontools.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:47:03,917 copying glycopeptidepy/_c/compat.h -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:47:03,919 copying glycopeptidepy/_c/compat.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:47:03,921 copying glycopeptidepy/_c/count_table.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:47:03,941 copying glycopeptidepy/_c/count_table.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:47:03,944 copying glycopeptidepy/_c/count_table.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:47:03,946 copying glycopeptidepy/_c/parser.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:47:03,956 copying glycopeptidepy/_c/parser.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:47:03,958 copying glycopeptidepy/_c/parser.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:47:03,961 copying glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T11:47:03,963 copying glycopeptidepy/structure/modification/data/unimod.json -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T11:47:03,993 copying glycopeptidepy/_c/structure/base.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:47:04,011 copying glycopeptidepy/_c/structure/base.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:47:04,013 copying glycopeptidepy/_c/structure/base.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:47:04,016 copying glycopeptidepy/_c/structure/constants.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:47:04,023 copying glycopeptidepy/_c/structure/constants.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:47:04,025 copying glycopeptidepy/_c/structure/constants.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:47:04,027 copying glycopeptidepy/_c/structure/fragment.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:47:04,060 copying glycopeptidepy/_c/structure/fragment.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:47:04,062 copying glycopeptidepy/_c/structure/fragment.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:47:04,064 copying glycopeptidepy/_c/structure/glycan.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:47:04,085 copying glycopeptidepy/_c/structure/glycan.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:47:04,088 copying glycopeptidepy/_c/structure/glycan.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:47:04,090 copying glycopeptidepy/_c/structure/sequence_methods.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:47:04,108 copying glycopeptidepy/_c/structure/sequence_methods.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:47:04,110 copying glycopeptidepy/_c/structure/sequence_methods.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:47:04,113 copying glycopeptidepy/_c/structure/modification/modification.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:47:04,124 copying glycopeptidepy/_c/structure/modification/modification.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:47:04,126 copying glycopeptidepy/_c/structure/modification/modification.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:47:04,128 copying glycopeptidepy/_c/structure/modification/rule.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:47:04,147 copying glycopeptidepy/_c/structure/modification/rule.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:47:04,149 copying glycopeptidepy/_c/structure/modification/rule.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:47:04,152 copying glycopeptidepy/_c/structure/modification/source.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:47:04,161 copying glycopeptidepy/_c/structure/modification/source.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:47:04,163 copying glycopeptidepy/_c/structure/modification/source.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:47:04,165 copying glycopeptidepy/_c/structure/modification/target.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:47:04,168 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:47:04,179 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:47:04,181 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:47:04,183 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:47:04,216 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:47:04,218 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:47:04,221 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:47:04,249 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:47:04,251 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:47:04,260 running build_ext 2023-09-18T11:47:04,267 building 'glycopeptidepy._c.collectiontools' extension 2023-09-18T11:47:04,267 creating build/temp.linux-armv7l-cpython-311 2023-09-18T11:47:04,268 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T11:47:04,269 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:47:04,270 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/collectiontools.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.o 2023-09-18T11:47:11,023 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:47:11,134 building 'glycopeptidepy._c.count_table' extension 2023-09-18T11:47:11,135 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/count_table.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.o 2023-09-18T11:47:12,924 glycopeptidepy/_c/count_table.c:4460:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist’ defined but not used [-Wunused-function] 2023-09-18T11:47:12,925 4460 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist(size_t __pyx_v_n, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_inst) { 2023-09-18T11:47:12,925 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-18T11:47:12,929 glycopeptidepy/_c/count_table.c:4189:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get’ defined but not used [-Wunused-function] 2023-09-18T11:47:12,930 4189 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2023-09-18T11:47:12,930 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-18T11:47:12,934 glycopeptidepy/_c/count_table.c:3947:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put’ defined but not used [-Wunused-function] 2023-09-18T11:47:12,935 3947 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2023-09-18T11:47:12,935 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-18T11:47:28,264 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:47:28,383 building 'glycopeptidepy._c.parser' extension 2023-09-18T11:47:28,383 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iglycopeptidepy/_c -I/usr/include/python3.11 -c glycopeptidepy/_c/parser.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.o 2023-09-18T11:47:28,744 In file included from glycopeptidepy/_c/parser.c:1187: 2023-09-18T11:47:28,745 glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2023-09-18T11:47:28,745 38 | #define PyInt_Check PyLong_Check 2023-09-18T11:47:28,746 | 2023-09-18T11:47:28,747 glycopeptidepy/_c/parser.c:1085: note: this is the location of the previous definition 2023-09-18T11:47:28,748 1085 | #define PyInt_Check(op) PyLong_Check(op) 2023-09-18T11:47:28,748 | 2023-09-18T11:47:28,749 glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2023-09-18T11:47:28,750 39 | #define PyInt_CheckExact PyLong_CheckExact 2023-09-18T11:47:28,750 | 2023-09-18T11:47:28,751 glycopeptidepy/_c/parser.c:1086: note: this is the location of the previous definition 2023-09-18T11:47:28,751 1086 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2023-09-18T11:47:28,752 | 2023-09-18T11:47:28,764 glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser__cstring_sequence_tokenizer’: 2023-09-18T11:47:28,767 glycopeptidepy/_c/parser.c:3603:21: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T11:47:28,767 3603 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2023-09-18T11:47:28,768 | ^ 2023-09-18T11:47:28,837 glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser_parse_simple’: 2023-09-18T11:47:28,843 glycopeptidepy/_c/parser.c:7712:23: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T11:47:28,843 7712 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2023-09-18T11:47:28,844 | ^ 2023-09-18T11:47:36,279 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:47:36,391 building 'glycopeptidepy._c.structure.base' extension 2023-09-18T11:47:36,392 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:47:36,392 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/base.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.o 2023-09-18T11:47:57,923 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:47:58,062 building 'glycopeptidepy._c.structure.fragment' extension 2023-09-18T11:47:58,063 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iglycopeptidepy/_c -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/fragment.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.o 2023-09-18T11:47:58,906 In file included from glycopeptidepy/_c/structure/fragment.c:1188: 2023-09-18T11:47:58,907 glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2023-09-18T11:47:58,907 38 | #define PyInt_Check PyLong_Check 2023-09-18T11:47:58,908 | 2023-09-18T11:47:58,909 glycopeptidepy/_c/structure/fragment.c:1085: note: this is the location of the previous definition 2023-09-18T11:47:58,909 1085 | #define PyInt_Check(op) PyLong_Check(op) 2023-09-18T11:47:58,910 | 2023-09-18T11:47:58,910 glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2023-09-18T11:47:58,911 39 | #define PyInt_CheckExact PyLong_CheckExact 2023-09-18T11:47:58,912 | 2023-09-18T11:47:58,912 glycopeptidepy/_c/structure/fragment.c:1086: note: this is the location of the previous definition 2023-09-18T11:47:58,913 1086 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2023-09-18T11:47:58,913 | 2023-09-18T11:47:58,957 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_init_str_ints’: 2023-09-18T11:47:58,963 glycopeptidepy/_c/structure/fragment.c:5798:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T11:47:58,963 5798 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2023-09-18T11:47:58,964 | ^ 2023-09-18T11:47:58,967 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_get_str_int’: 2023-09-18T11:47:58,973 glycopeptidepy/_c/structure/fragment.c:6027:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T11:47:58,973 6027 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2023-09-18T11:47:58,973 | ^ 2023-09-18T11:47:59,247 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_15PeptideFragment_get_fragment_name’: 2023-09-18T11:47:59,260 glycopeptidepy/_c/structure/fragment.c:14261:22: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T11:47:59,260 14261 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-18T11:47:59,261 | ^ 2023-09-18T11:47:59,280 glycopeptidepy/_c/structure/fragment.c:14576:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T11:47:59,280 14576 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-18T11:47:59,281 | ^ 2023-09-18T11:47:59,295 glycopeptidepy/_c/structure/fragment.c:14749:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T11:47:59,296 14749 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-18T11:47:59,297 | ^ 2023-09-18T11:47:59,311 glycopeptidepy/_c/structure/fragment.c:14926:24: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T11:47:59,312 14926 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-18T11:47:59,313 | ^ 2023-09-18T11:48:36,179 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:48:36,340 building 'glycopeptidepy._c.structure.constants' extension 2023-09-18T11:48:36,341 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/constants.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.o 2023-09-18T11:48:42,332 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:48:42,438 building 'glycopeptidepy._c.structure.glycan' extension 2023-09-18T11:48:42,439 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/glycan.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.o 2023-09-18T11:49:05,710 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:49:05,855 building 'glycopeptidepy._c.structure.sequence_methods' extension 2023-09-18T11:49:05,857 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/sequence_methods.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.o 2023-09-18T11:49:06,545 glycopeptidepy/_c/structure/sequence_methods.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_16sequence_methods_add_modification’: 2023-09-18T11:49:06,558 glycopeptidepy/_c/structure/sequence_methods.c:14874:36: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-18T11:49:06,559 14874 | __pyx_t_7 = (__pyx_v_position_ >= __pyx_t_8); 2023-09-18T11:49:06,560 | ^~ 2023-09-18T11:49:26,717 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:49:26,845 building 'glycopeptidepy._c.structure.modification.rule' extension 2023-09-18T11:49:26,846 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:49:26,847 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/modification/rule.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.o 2023-09-18T11:49:39,686 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:49:39,805 building 'glycopeptidepy._c.structure.modification.modification' extension 2023-09-18T11:49:39,806 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/modification/modification.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.o 2023-09-18T11:49:47,901 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:49:48,018 building 'glycopeptidepy._c.structure.modification.source' extension 2023-09-18T11:49:48,018 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/modification/source.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.o 2023-09-18T11:49:56,024 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:49:56,135 building 'glycopeptidepy._c.structure.fragmentation_strategy.base' extension 2023-09-18T11:49:56,136 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:49:56,137 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/fragmentation_strategy/base.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.o 2023-09-18T11:50:05,229 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:50:05,340 building 'glycopeptidepy._c.structure.fragmentation_strategy.peptide' extension 2023-09-18T11:50:05,341 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o 2023-09-18T11:50:37,483 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:50:37,625 building 'glycopeptidepy._c.structure.fragmentation_strategy.glycan' extension 2023-09-18T11:50:37,626 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o 2023-09-18T11:50:38,291 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_fucosylate_extended’: 2023-09-18T11:50:38,303 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:12960:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2023-09-18T11:50:38,304 12960 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-09-18T11:50:38,305 | ^ 2023-09-18T11:50:38,315 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:12977:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2023-09-18T11:50:38,316 12977 | for (__pyx_t_9 = 1; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-09-18T11:50:38,317 | ^ 2023-09-18T11:50:38,452 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_n_glycan_stub_fragments’: 2023-09-18T11:50:38,468 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17280:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-18T11:50:38,469 17280 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-09-18T11:50:38,469 | ^ 2023-09-18T11:50:38,489 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_o_glycan_stub_fragments’: 2023-09-18T11:50:38,506 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17963:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-09-18T11:50:38,507 17963 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_15; __pyx_t_9+=1) { 2023-09-18T11:50:38,508 | ^ 2023-09-18T11:50:38,564 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_gag_linker_stub_fragments’: 2023-09-18T11:50:38,583 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:19881:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-09-18T11:50:38,583 19881 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_15; __pyx_t_9+=1) { 2023-09-18T11:50:38,584 | ^ 2023-09-18T11:51:09,894 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:51:10,048 building 'glycopeptidepy._c.algorithm' extension 2023-09-18T11:51:10,048 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/algorithm.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.o 2023-09-18T11:51:24,301 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:51:24,431 installing to build/bdist.linux-armv7l/wheel 2023-09-18T11:51:24,432 running install 2023-09-18T11:51:24,456 running install_lib 2023-09-18T11:51:24,465 creating build/bdist.linux-armv7l 2023-09-18T11:51:24,466 creating build/bdist.linux-armv7l/wheel 2023-09-18T11:51:24,467 creating build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T11:51:24,469 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T11:51:24,471 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/version.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T11:51:24,473 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T11:51:24,474 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/mzid.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T11:51:24,476 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T11:51:24,479 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T11:51:24,481 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/annotation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T11:51:24,483 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T11:51:24,486 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T11:51:24,489 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T11:51:24,490 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T11:51:24,492 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/term.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T11:51:24,495 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T11:51:24,497 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/peff.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T11:51:24,499 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/nextprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T11:51:24,502 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:51:24,503 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:51:24,505 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:51:24,507 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T11:51:24,508 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T11:51:24,511 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T11:51:24,513 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/implementation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T11:51:24,515 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T11:51:24,518 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T11:51:24,520 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:51:24,522 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:51:24,526 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T11:51:24,527 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/rule.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T11:51:24,531 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T11:51:24,533 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/descriptors.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T11:51:24,535 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T11:51:24,538 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/source.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T11:51:24,541 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T11:51:24,544 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/target.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T11:51:24,549 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T11:51:24,551 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T11:51:24,553 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T11:51:24,557 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T11:51:24,561 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/unimod.json -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T11:51:24,598 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T11:51:24,600 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/glycosylation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T11:51:24,603 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:51:24,604 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:51:24,607 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:51:24,609 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:51:24,612 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:51:24,615 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:51:24,618 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/terminal_group.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:51:24,621 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:51:24,624 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/constants.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:51:24,626 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/parser.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:51:24,629 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:51:24,633 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:24,635 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:24,639 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:24,643 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:24,663 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:24,665 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:24,683 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/compat.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:24,685 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:24,698 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:24,699 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:24,701 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:24,703 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/cythonize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:24,704 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:24,716 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:24,733 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:24,734 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:24,737 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:24,739 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:24,741 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:51:24,742 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:51:24,764 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/target.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:51:24,770 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:51:24,779 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:51:24,844 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:51:24,847 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:51:24,850 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:51:24,868 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:51:24,869 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:51:24,871 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:51:24,879 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:51:24,896 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:51:24,898 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:51:24,900 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:51:24,914 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:24,951 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:24,953 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:24,955 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:24,972 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:51:24,973 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:51:24,976 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:51:24,977 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:51:25,004 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:51:25,014 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:51:25,025 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:51:25,066 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:51:25,110 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:51:25,113 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:51:25,115 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:51:25,118 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:51:25,144 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:51:25,146 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:51:25,149 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:25,170 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:25,172 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:25,192 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:25,195 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:25,197 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:25,199 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:25,216 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:25,235 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:25,243 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:25,268 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:25,275 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:25,291 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:25,293 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:51:25,295 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:25,298 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:25,305 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:25,313 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:25,315 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:25,324 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/compat.h -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:51:25,326 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/algorithm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T11:51:25,329 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T11:51:25,330 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/iterators.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T11:51:25,332 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T11:51:25,334 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/memoize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T11:51:25,337 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/sequence_tree.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T11:51:25,339 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T11:51:25,342 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/collectiontools.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T11:51:25,344 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T11:51:25,347 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:51:25,348 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:51:25,350 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:51:25,352 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:51:25,354 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:51:25,357 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:51:25,359 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:51:25,361 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/common.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:51:25,363 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:51:25,365 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:51:25,367 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:51:25,370 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:51:25,372 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:51:25,373 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_algorithms.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:51:25,375 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_fragmentation_strategy.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:51:25,377 running install_egg_info 2023-09-18T11:51:25,390 Copying glycopeptidepy.egg-info to build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.17-py3.11.egg-info 2023-09-18T11:51:25,402 running install_scripts 2023-09-18T11:51:25,450 creating build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.17.dist-info/WHEEL 2023-09-18T11:51:25,453 creating '/tmp/pip-wheel-zciuvqpk/.tmp-tfbfw909/glycopeptidepy-0.0.17-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-18T11:51:25,456 adding 'glycopeptidepy/__init__.py' 2023-09-18T11:51:25,459 adding 'glycopeptidepy/algorithm.py' 2023-09-18T11:51:25,461 adding 'glycopeptidepy/enzyme.py' 2023-09-18T11:51:25,463 adding 'glycopeptidepy/version.py' 2023-09-18T11:51:25,465 adding 'glycopeptidepy/_c/__init__.py' 2023-09-18T11:51:25,521 adding 'glycopeptidepy/_c/algorithm.c' 2023-09-18T11:51:25,671 adding 'glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:51:25,679 adding 'glycopeptidepy/_c/algorithm.pyx' 2023-09-18T11:51:25,716 adding 'glycopeptidepy/_c/collectiontools.c' 2023-09-18T11:51:25,790 adding 'glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:51:25,795 adding 'glycopeptidepy/_c/collectiontools.pxd' 2023-09-18T11:51:25,796 adding 'glycopeptidepy/_c/collectiontools.pyx' 2023-09-18T11:51:25,798 adding 'glycopeptidepy/_c/compat.h' 2023-09-18T11:51:25,799 adding 'glycopeptidepy/_c/compat.pxd' 2023-09-18T11:51:25,866 adding 'glycopeptidepy/_c/count_table.c' 2023-09-18T11:51:26,024 adding 'glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:51:26,031 adding 'glycopeptidepy/_c/count_table.pxd' 2023-09-18T11:51:26,034 adding 'glycopeptidepy/_c/count_table.pyx' 2023-09-18T11:51:26,036 adding 'glycopeptidepy/_c/cythonize.py' 2023-09-18T11:51:26,079 adding 'glycopeptidepy/_c/parser.c' 2023-09-18T11:51:26,165 adding 'glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:51:26,169 adding 'glycopeptidepy/_c/parser.pxd' 2023-09-18T11:51:26,172 adding 'glycopeptidepy/_c/parser.pyx' 2023-09-18T11:51:26,174 adding 'glycopeptidepy/_c/structure/__init__.py' 2023-09-18T11:51:26,249 adding 'glycopeptidepy/_c/structure/base.c' 2023-09-18T11:51:26,458 adding 'glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:51:26,467 adding 'glycopeptidepy/_c/structure/base.pxd' 2023-09-18T11:51:26,469 adding 'glycopeptidepy/_c/structure/base.pyx' 2023-09-18T11:51:26,502 adding 'glycopeptidepy/_c/structure/constants.c' 2023-09-18T11:51:26,572 adding 'glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:51:26,576 adding 'glycopeptidepy/_c/structure/constants.pxd' 2023-09-18T11:51:26,578 adding 'glycopeptidepy/_c/structure/constants.pyx' 2023-09-18T11:51:26,688 adding 'glycopeptidepy/_c/structure/fragment.c' 2023-09-18T11:51:26,999 adding 'glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:51:27,013 adding 'glycopeptidepy/_c/structure/fragment.pxd' 2023-09-18T11:51:27,017 adding 'glycopeptidepy/_c/structure/fragment.pyx' 2023-09-18T11:51:27,102 adding 'glycopeptidepy/_c/structure/glycan.c' 2023-09-18T11:51:27,318 adding 'glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:51:27,328 adding 'glycopeptidepy/_c/structure/glycan.pxd' 2023-09-18T11:51:27,330 adding 'glycopeptidepy/_c/structure/glycan.pyx' 2023-09-18T11:51:27,403 adding 'glycopeptidepy/_c/structure/sequence_methods.c' 2023-09-18T11:51:27,596 adding 'glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:51:27,605 adding 'glycopeptidepy/_c/structure/sequence_methods.pxd' 2023-09-18T11:51:27,608 adding 'glycopeptidepy/_c/structure/sequence_methods.pyx' 2023-09-18T11:51:27,610 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py' 2023-09-18T11:51:27,653 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.c' 2023-09-18T11:51:27,741 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:51:27,746 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd' 2023-09-18T11:51:27,749 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx' 2023-09-18T11:51:27,857 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c' 2023-09-18T11:51:28,142 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:51:28,155 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd' 2023-09-18T11:51:28,159 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx' 2023-09-18T11:51:28,259 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c' 2023-09-18T11:51:28,533 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:51:28,545 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd' 2023-09-18T11:51:28,548 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx' 2023-09-18T11:51:28,551 adding 'glycopeptidepy/_c/structure/modification/__init__.py' 2023-09-18T11:51:28,590 adding 'glycopeptidepy/_c/structure/modification/modification.c' 2023-09-18T11:51:28,677 adding 'glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:51:28,682 adding 'glycopeptidepy/_c/structure/modification/modification.pxd' 2023-09-18T11:51:28,684 adding 'glycopeptidepy/_c/structure/modification/modification.pyx' 2023-09-18T11:51:28,736 adding 'glycopeptidepy/_c/structure/modification/rule.c' 2023-09-18T11:51:28,869 adding 'glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:51:28,876 adding 'glycopeptidepy/_c/structure/modification/rule.pxd' 2023-09-18T11:51:28,878 adding 'glycopeptidepy/_c/structure/modification/rule.pyx' 2023-09-18T11:51:28,918 adding 'glycopeptidepy/_c/structure/modification/source.c' 2023-09-18T11:51:29,006 adding 'glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:51:29,011 adding 'glycopeptidepy/_c/structure/modification/source.pxd' 2023-09-18T11:51:29,012 adding 'glycopeptidepy/_c/structure/modification/source.pyx' 2023-09-18T11:51:29,014 adding 'glycopeptidepy/_c/structure/modification/target.pyx' 2023-09-18T11:51:29,016 adding 'glycopeptidepy/io/__init__.py' 2023-09-18T11:51:29,018 adding 'glycopeptidepy/io/annotation.py' 2023-09-18T11:51:29,022 adding 'glycopeptidepy/io/fasta.py' 2023-09-18T11:51:29,024 adding 'glycopeptidepy/io/mzid.py' 2023-09-18T11:51:29,025 adding 'glycopeptidepy/io/nextprot.py' 2023-09-18T11:51:29,028 adding 'glycopeptidepy/io/uniprot.py' 2023-09-18T11:51:29,030 adding 'glycopeptidepy/io/utils.py' 2023-09-18T11:51:29,032 adding 'glycopeptidepy/io/cv/__init__.py' 2023-09-18T11:51:29,034 adding 'glycopeptidepy/io/cv/peff.py' 2023-09-18T11:51:29,036 adding 'glycopeptidepy/io/cv/term.py' 2023-09-18T11:51:29,037 adding 'glycopeptidepy/io/cv/uniprot_ptm.py' 2023-09-18T11:51:29,039 adding 'glycopeptidepy/structure/__init__.py' 2023-09-18T11:51:29,041 adding 'glycopeptidepy/structure/base.py' 2023-09-18T11:51:29,042 adding 'glycopeptidepy/structure/composition.py' 2023-09-18T11:51:29,044 adding 'glycopeptidepy/structure/constants.py' 2023-09-18T11:51:29,047 adding 'glycopeptidepy/structure/fragment.py' 2023-09-18T11:51:29,049 adding 'glycopeptidepy/structure/glycan.py' 2023-09-18T11:51:29,051 adding 'glycopeptidepy/structure/parser.py' 2023-09-18T11:51:29,054 adding 'glycopeptidepy/structure/residue.py' 2023-09-18T11:51:29,056 adding 'glycopeptidepy/structure/sequence_composition.py' 2023-09-18T11:51:29,058 adding 'glycopeptidepy/structure/terminal_group.py' 2023-09-18T11:51:29,060 adding 'glycopeptidepy/structure/fragmentation_strategy/__init__.py' 2023-09-18T11:51:29,061 adding 'glycopeptidepy/structure/fragmentation_strategy/base.py' 2023-09-18T11:51:29,066 adding 'glycopeptidepy/structure/fragmentation_strategy/glycan.py' 2023-09-18T11:51:29,069 adding 'glycopeptidepy/structure/fragmentation_strategy/peptide.py' 2023-09-18T11:51:29,071 adding 'glycopeptidepy/structure/modification/__init__.py' 2023-09-18T11:51:29,073 adding 'glycopeptidepy/structure/modification/descriptors.py' 2023-09-18T11:51:29,075 adding 'glycopeptidepy/structure/modification/glycosylation.py' 2023-09-18T11:51:29,077 adding 'glycopeptidepy/structure/modification/modification.py' 2023-09-18T11:51:29,081 adding 'glycopeptidepy/structure/modification/rule.py' 2023-09-18T11:51:29,083 adding 'glycopeptidepy/structure/modification/source.py' 2023-09-18T11:51:29,086 adding 'glycopeptidepy/structure/modification/target.py' 2023-09-18T11:51:29,087 adding 'glycopeptidepy/structure/modification/utils.py' 2023-09-18T11:51:29,089 adding 'glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv' 2023-09-18T11:51:29,091 adding 'glycopeptidepy/structure/modification/data/__init__.py' 2023-09-18T11:51:29,092 adding 'glycopeptidepy/structure/modification/data/patch_unimod.py' 2023-09-18T11:51:29,157 adding 'glycopeptidepy/structure/modification/data/unimod.json' 2023-09-18T11:51:29,175 adding 'glycopeptidepy/structure/modification/data/unimod.py' 2023-09-18T11:51:29,177 adding 'glycopeptidepy/structure/sequence/__init__.py' 2023-09-18T11:51:29,179 adding 'glycopeptidepy/structure/sequence/base.py' 2023-09-18T11:51:29,181 adding 'glycopeptidepy/structure/sequence/glycosylated_sequence.py' 2023-09-18T11:51:29,183 adding 'glycopeptidepy/structure/sequence/implementation.py' 2023-09-18T11:51:29,185 adding 'glycopeptidepy/structure/sequence/mutable_sequence.py' 2023-09-18T11:51:29,187 adding 'glycopeptidepy/test/__init__.py' 2023-09-18T11:51:29,188 adding 'glycopeptidepy/test/common.py' 2023-09-18T11:51:29,190 adding 'glycopeptidepy/test/test_algorithms.py' 2023-09-18T11:51:29,191 adding 'glycopeptidepy/test/test_enzyme.py' 2023-09-18T11:51:29,193 adding 'glycopeptidepy/test/test_fasta.py' 2023-09-18T11:51:29,195 adding 'glycopeptidepy/test/test_fragment.py' 2023-09-18T11:51:29,196 adding 'glycopeptidepy/test/test_fragmentation_strategy.py' 2023-09-18T11:51:29,198 adding 'glycopeptidepy/test/test_intervals.py' 2023-09-18T11:51:29,200 adding 'glycopeptidepy/test/test_modification.py' 2023-09-18T11:51:29,201 adding 'glycopeptidepy/test/test_residue.py' 2023-09-18T11:51:29,203 adding 'glycopeptidepy/test/test_sequence.py' 2023-09-18T11:51:29,205 adding 'glycopeptidepy/test/test_sequence_composition.py' 2023-09-18T11:51:29,206 adding 'glycopeptidepy/test/test_uniprot.py' 2023-09-18T11:51:29,208 adding 'glycopeptidepy/test/test_utils.py' 2023-09-18T11:51:29,210 adding 'glycopeptidepy/utils/__init__.py' 2023-09-18T11:51:29,211 adding 'glycopeptidepy/utils/collectiontools.py' 2023-09-18T11:51:29,214 adding 'glycopeptidepy/utils/intervals.py' 2023-09-18T11:51:29,215 adding 'glycopeptidepy/utils/iterators.py' 2023-09-18T11:51:29,217 adding 'glycopeptidepy/utils/memoize.py' 2023-09-18T11:51:29,218 adding 'glycopeptidepy/utils/sequence_tree.py' 2023-09-18T11:51:29,220 adding 'glycopeptidepy-0.0.17.dist-info/METADATA' 2023-09-18T11:51:29,222 adding 'glycopeptidepy-0.0.17.dist-info/WHEEL' 2023-09-18T11:51:29,223 adding 'glycopeptidepy-0.0.17.dist-info/top_level.txt' 2023-09-18T11:51:29,225 adding 'glycopeptidepy-0.0.17.dist-info/RECORD' 2023-09-18T11:51:29,291 removing build/bdist.linux-armv7l/wheel 2023-09-18T11:51:29,484 Building wheel for glycopeptidepy (pyproject.toml): finished with status 'done' 2023-09-18T11:51:29,627 Created wheel for glycopeptidepy: filename=glycopeptidepy-0.0.17-cp311-cp311-linux_armv7l.whl size=6337535 sha256=34e2264a8842b11390ea9c0369f54856395129c2d56d5ef1a3f0dfe2c85c00b0 2023-09-18T11:51:29,629 Stored in directory: /tmp/pip-ephem-wheel-cache-947puk0v/wheels/f8/7a/90/3c155850411ac4a257f6e96662d3a1b26889bfb68aa9cccd67 2023-09-18T11:51:29,644 Successfully built glycopeptidepy 2023-09-18T11:51:29,797 Removed build tracker: '/tmp/pip-build-tracker-mn3w_gec'