2023-09-18T11:48:35,689 Created temporary directory: /tmp/pip-build-tracker-3s6lmal0 2023-09-18T11:48:35,690 Initialized build tracking at /tmp/pip-build-tracker-3s6lmal0 2023-09-18T11:48:35,691 Created build tracker: /tmp/pip-build-tracker-3s6lmal0 2023-09-18T11:48:35,691 Entered build tracker: /tmp/pip-build-tracker-3s6lmal0 2023-09-18T11:48:35,692 Created temporary directory: /tmp/pip-wheel-q0g4bs5d 2023-09-18T11:48:35,695 Created temporary directory: /tmp/pip-ephem-wheel-cache-oi96fpiw 2023-09-18T11:48:35,719 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-18T11:48:35,722 2 location(s) to search for versions of glycopeptidepy: 2023-09-18T11:48:35,722 * https://pypi.org/simple/glycopeptidepy/ 2023-09-18T11:48:35,722 * https://www.piwheels.org/simple/glycopeptidepy/ 2023-09-18T11:48:35,723 Fetching project page and analyzing links: https://pypi.org/simple/glycopeptidepy/ 2023-09-18T11:48:35,724 Getting page https://pypi.org/simple/glycopeptidepy/ 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https://pypi.org/simple/glycopeptidepy/ 2023-09-18T11:48:36,358 Given no hashes to check 1 links for project 'glycopeptidepy': discarding no candidates 2023-09-18T11:48:36,376 Collecting glycopeptidepy==0.0.18 2023-09-18T11:48:36,378 Created temporary directory: /tmp/pip-unpack-d3mhswlw 2023-09-18T11:48:37,039 Downloading glycopeptidepy-0.0.18.tar.gz (1.3 MB) 2023-09-18T11:48:37,938 Added glycopeptidepy==0.0.18 from https://files.pythonhosted.org/packages/3a/0c/64c494095199ad19f57f205f7784b87e240a5ab6f18dd0376aac8697a89a/glycopeptidepy-0.0.18.tar.gz to build tracker '/tmp/pip-build-tracker-3s6lmal0' 2023-09-18T11:48:37,944 Created temporary directory: /tmp/pip-build-env-5j879aga 2023-09-18T11:48:37,948 Installing build dependencies: started 2023-09-18T11:48:37,949 Running command pip subprocess to install build dependencies 2023-09-18T11:48:39,129 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-18T11:48:39,625 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-18T11:48:41,291 Collecting setuptools 2023-09-18T11:48:41,293 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-18T11:48:41,298 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-18T11:48:41,502 Collecting wheel 2023-09-18T11:48:41,518 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-18T11:48:42,929 Collecting Cython 2023-09-18T11:48:42,931 Obtaining dependency information for Cython from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata 2023-09-18T11:48:42,936 Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-18T11:48:43,119 Collecting glypy 2023-09-18T11:48:43,134 Downloading https://www.piwheels.org/simple/glypy/glypy-1.0.3-cp311-cp311-linux_armv7l.whl (1.7 MB) 2023-09-18T11:48:43,316 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 9.9 MB/s eta 0:00:00 2023-09-18T11:48:43,618 Collecting hjson (from glypy) 2023-09-18T11:48:43,630 Downloading https://www.piwheels.org/simple/hjson/hjson-3.1.0-py3-none-any.whl (54 kB) 2023-09-18T11:48:43,646 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.0/54.0 kB 5.3 MB/s eta 0:00:00 2023-09-18T11:48:43,742 Collecting six (from glypy) 2023-09-18T11:48:43,755 Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB) 2023-09-18T11:48:43,786 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-18T11:48:43,824 Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB) 2023-09-18T11:48:46,355 Installing collected packages: hjson, wheel, six, setuptools, Cython, glypy 2023-09-18T11:48:46,580 Creating /tmp/pip-build-env-5j879aga/overlay/local/bin 2023-09-18T11:48:46,582 changing mode of /tmp/pip-build-env-5j879aga/overlay/local/bin/hjson to 755 2023-09-18T11:48:46,807 changing mode of /tmp/pip-build-env-5j879aga/overlay/local/bin/wheel to 755 2023-09-18T11:48:52,017 changing mode of /tmp/pip-build-env-5j879aga/overlay/local/bin/cygdb to 755 2023-09-18T11:48:52,020 changing mode of /tmp/pip-build-env-5j879aga/overlay/local/bin/cython to 755 2023-09-18T11:48:52,022 changing mode of /tmp/pip-build-env-5j879aga/overlay/local/bin/cythonize to 755 2023-09-18T11:48:53,633 Successfully installed Cython-3.0.2 glypy-1.0.3 hjson-3.1.0 setuptools-68.2.2 six-1.16.0 wheel-0.41.2 2023-09-18T11:48:54,252 Installing build dependencies: finished with status 'done' 2023-09-18T11:48:54,268 Getting requirements to build wheel: started 2023-09-18T11:48:54,270 Running command Getting requirements to build wheel 2023-09-18T11:48:59,563 /tmp/pip-build-env-5j879aga/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-q0g4bs5d/glycopeptidepy_11eeadc501b9470ba291e5eb45f37b35/glycopeptidepy/_c/algorithm.pyx 2023-09-18T11:48:59,563 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:49:00,820 /tmp/pip-build-env-5j879aga/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-q0g4bs5d/glycopeptidepy_11eeadc501b9470ba291e5eb45f37b35/glycopeptidepy/_c/collectiontools.pxd 2023-09-18T11:49:00,821 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:49:02,611 /tmp/pip-build-env-5j879aga/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-q0g4bs5d/glycopeptidepy_11eeadc501b9470ba291e5eb45f37b35/glycopeptidepy/_c/count_table.pxd 2023-09-18T11:49:02,612 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:49:04,786 warning: glycopeptidepy/_c/count_table.pyx:15:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:04,803 warning: glycopeptidepy/_c/count_table.pyx:102:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:04,824 warning: glycopeptidepy/_c/count_table.pyx:184:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:04,826 warning: glycopeptidepy/_c/count_table.pyx:195:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:06,410 /tmp/pip-build-env-5j879aga/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-q0g4bs5d/glycopeptidepy_11eeadc501b9470ba291e5eb45f37b35/glycopeptidepy/_c/parser.pxd 2023-09-18T11:49:06,411 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:49:08,288 warning: glycopeptidepy/_c/parser.pyx:224:23: Unreachable code 2023-09-18T11:49:08,607 /tmp/pip-build-env-5j879aga/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-q0g4bs5d/glycopeptidepy_11eeadc501b9470ba291e5eb45f37b35/glycopeptidepy/_c/structure/base.pxd 2023-09-18T11:49:08,608 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:49:08,618 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:08,619 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:08,620 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:08,620 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:08,690 warning: glycopeptidepy/_c/structure/base.pyx:11:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:08,691 warning: glycopeptidepy/_c/structure/base.pyx:17:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:10,199 /tmp/pip-build-env-5j879aga/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-q0g4bs5d/glycopeptidepy_11eeadc501b9470ba291e5eb45f37b35/glycopeptidepy/_c/structure/constants.pxd 2023-09-18T11:49:10,199 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:49:10,397 /tmp/pip-build-env-5j879aga/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-q0g4bs5d/glycopeptidepy_11eeadc501b9470ba291e5eb45f37b35/glycopeptidepy/_c/structure/fragment.pxd 2023-09-18T11:49:10,398 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:49:11,985 warning: glycopeptidepy/_c/structure/fragment.pyx:41:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:11,985 warning: glycopeptidepy/_c/structure/fragment.pyx:42:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:12,390 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:12,390 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:12,391 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:12,392 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:14,106 /tmp/pip-build-env-5j879aga/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-q0g4bs5d/glycopeptidepy_11eeadc501b9470ba291e5eb45f37b35/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd 2023-09-18T11:49:14,106 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:49:15,777 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:15,778 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:15,779 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:15,779 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:16,097 /tmp/pip-build-env-5j879aga/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-q0g4bs5d/glycopeptidepy_11eeadc501b9470ba291e5eb45f37b35/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd 2023-09-18T11:49:16,098 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:49:17,689 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:17,690 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:17,690 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:17,691 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:18,794 warning: glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx:1034:8: local variable 'total_core_count' referenced before assignment 2023-09-18T11:49:20,161 /tmp/pip-build-env-5j879aga/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-q0g4bs5d/glycopeptidepy_11eeadc501b9470ba291e5eb45f37b35/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd 2023-09-18T11:49:20,162 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:49:21,681 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:21,682 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:21,683 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:21,683 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:23,557 /tmp/pip-build-env-5j879aga/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-q0g4bs5d/glycopeptidepy_11eeadc501b9470ba291e5eb45f37b35/glycopeptidepy/_c/structure/glycan.pxd 2023-09-18T11:49:23,558 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:49:23,639 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:23,640 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:23,640 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:23,641 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:25,398 /tmp/pip-build-env-5j879aga/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-q0g4bs5d/glycopeptidepy_11eeadc501b9470ba291e5eb45f37b35/glycopeptidepy/_c/structure/modification/modification.pxd 2023-09-18T11:49:25,399 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:49:25,417 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:25,418 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:25,418 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:25,419 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:25,840 /tmp/pip-build-env-5j879aga/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-q0g4bs5d/glycopeptidepy_11eeadc501b9470ba291e5eb45f37b35/glycopeptidepy/_c/structure/modification/rule.pxd 2023-09-18T11:49:25,841 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:49:25,893 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:25,894 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:25,895 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:25,895 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:26,583 /tmp/pip-build-env-5j879aga/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-q0g4bs5d/glycopeptidepy_11eeadc501b9470ba291e5eb45f37b35/glycopeptidepy/_c/structure/modification/source.pxd 2023-09-18T11:49:26,584 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:49:26,646 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:26,647 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:26,647 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:26,648 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:27,688 /tmp/pip-build-env-5j879aga/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-q0g4bs5d/glycopeptidepy_11eeadc501b9470ba291e5eb45f37b35/glycopeptidepy/_c/structure/sequence_methods.pxd 2023-09-18T11:49:27,689 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T11:49:27,748 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:27,749 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:27,749 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:27,750 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T11:49:30,523 Compiling glycopeptidepy/_c/collectiontools.pyx because it changed. 2023-09-18T11:49:30,524 Compiling glycopeptidepy/_c/count_table.pyx because it changed. 2023-09-18T11:49:30,525 Compiling glycopeptidepy/_c/parser.pyx because it changed. 2023-09-18T11:49:30,526 Compiling glycopeptidepy/_c/structure/base.pyx because it changed. 2023-09-18T11:49:30,526 Compiling glycopeptidepy/_c/structure/fragment.pyx because it changed. 2023-09-18T11:49:30,527 Compiling glycopeptidepy/_c/structure/constants.pyx because it changed. 2023-09-18T11:49:30,528 Compiling glycopeptidepy/_c/structure/glycan.pyx because it changed. 2023-09-18T11:49:30,528 Compiling glycopeptidepy/_c/structure/sequence_methods.pyx because it changed. 2023-09-18T11:49:30,529 Compiling glycopeptidepy/_c/structure/modification/rule.pyx because it changed. 2023-09-18T11:49:30,529 Compiling glycopeptidepy/_c/structure/modification/modification.pyx because it changed. 2023-09-18T11:49:30,530 Compiling glycopeptidepy/_c/structure/modification/source.pyx because it changed. 2023-09-18T11:49:30,531 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it changed. 2023-09-18T11:49:30,531 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it changed. 2023-09-18T11:49:30,532 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it changed. 2023-09-18T11:49:30,533 Compiling glycopeptidepy/_c/algorithm.pyx because it changed. 2023-09-18T11:49:30,534 [ 1/15] Cythonizing glycopeptidepy/_c/algorithm.pyx 2023-09-18T11:49:30,534 [ 2/15] Cythonizing glycopeptidepy/_c/collectiontools.pyx 2023-09-18T11:49:30,535 [ 3/15] Cythonizing glycopeptidepy/_c/count_table.pyx 2023-09-18T11:49:30,536 [ 4/15] Cythonizing glycopeptidepy/_c/parser.pyx 2023-09-18T11:49:30,537 [ 5/15] Cythonizing glycopeptidepy/_c/structure/base.pyx 2023-09-18T11:49:30,538 [ 6/15] Cythonizing glycopeptidepy/_c/structure/constants.pyx 2023-09-18T11:49:30,539 [ 7/15] Cythonizing glycopeptidepy/_c/structure/fragment.pyx 2023-09-18T11:49:30,539 [ 8/15] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx 2023-09-18T11:49:30,540 [ 9/15] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx 2023-09-18T11:49:30,541 [10/15] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx 2023-09-18T11:49:30,541 [11/15] Cythonizing glycopeptidepy/_c/structure/glycan.pyx 2023-09-18T11:49:30,542 [12/15] Cythonizing glycopeptidepy/_c/structure/modification/modification.pyx 2023-09-18T11:49:30,543 [13/15] Cythonizing glycopeptidepy/_c/structure/modification/rule.pyx 2023-09-18T11:49:30,543 [14/15] Cythonizing glycopeptidepy/_c/structure/modification/source.pyx 2023-09-18T11:49:30,544 [15/15] Cythonizing glycopeptidepy/_c/structure/sequence_methods.pyx 2023-09-18T11:49:30,612 running egg_info 2023-09-18T11:49:30,618 writing glycopeptidepy.egg-info/PKG-INFO 2023-09-18T11:49:30,621 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2023-09-18T11:49:30,623 writing requirements to glycopeptidepy.egg-info/requires.txt 2023-09-18T11:49:30,624 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2023-09-18T11:49:30,676 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T11:49:30,683 reading manifest template 'MANIFEST.in' 2023-09-18T11:49:30,685 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-18T11:49:30,686 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-18T11:49:30,962 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T11:49:31,281 Getting requirements to build wheel: finished with status 'done' 2023-09-18T11:49:31,294 Created temporary directory: /tmp/pip-modern-metadata-t6drxbvs 2023-09-18T11:49:31,297 Preparing metadata (pyproject.toml): started 2023-09-18T11:49:31,298 Running command Preparing metadata (pyproject.toml) 2023-09-18T11:49:34,580 running dist_info 2023-09-18T11:49:34,601 creating /tmp/pip-modern-metadata-t6drxbvs/glycopeptidepy.egg-info 2023-09-18T11:49:34,606 writing /tmp/pip-modern-metadata-t6drxbvs/glycopeptidepy.egg-info/PKG-INFO 2023-09-18T11:49:34,610 writing dependency_links to /tmp/pip-modern-metadata-t6drxbvs/glycopeptidepy.egg-info/dependency_links.txt 2023-09-18T11:49:34,612 writing requirements to /tmp/pip-modern-metadata-t6drxbvs/glycopeptidepy.egg-info/requires.txt 2023-09-18T11:49:34,613 writing top-level names to /tmp/pip-modern-metadata-t6drxbvs/glycopeptidepy.egg-info/top_level.txt 2023-09-18T11:49:34,614 writing manifest file '/tmp/pip-modern-metadata-t6drxbvs/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T11:49:34,647 reading manifest file '/tmp/pip-modern-metadata-t6drxbvs/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T11:49:34,649 reading manifest template 'MANIFEST.in' 2023-09-18T11:49:34,650 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-18T11:49:34,650 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-18T11:49:34,827 writing manifest file '/tmp/pip-modern-metadata-t6drxbvs/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T11:49:34,828 creating '/tmp/pip-modern-metadata-t6drxbvs/glycopeptidepy-0.0.18.dist-info' 2023-09-18T11:49:35,060 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-18T11:49:35,064 Source in /tmp/pip-wheel-q0g4bs5d/glycopeptidepy_11eeadc501b9470ba291e5eb45f37b35 has version 0.0.18, which satisfies requirement glycopeptidepy==0.0.18 from https://files.pythonhosted.org/packages/3a/0c/64c494095199ad19f57f205f7784b87e240a5ab6f18dd0376aac8697a89a/glycopeptidepy-0.0.18.tar.gz 2023-09-18T11:49:35,066 Removed glycopeptidepy==0.0.18 from https://files.pythonhosted.org/packages/3a/0c/64c494095199ad19f57f205f7784b87e240a5ab6f18dd0376aac8697a89a/glycopeptidepy-0.0.18.tar.gz from build tracker '/tmp/pip-build-tracker-3s6lmal0' 2023-09-18T11:49:35,069 Created temporary directory: /tmp/pip-unpack-qxkq6eav 2023-09-18T11:49:35,071 Created temporary directory: /tmp/pip-unpack-iyu_nfew 2023-09-18T11:49:35,080 Building wheels for collected packages: glycopeptidepy 2023-09-18T11:49:35,084 Created temporary directory: /tmp/pip-wheel-4qx7st2m 2023-09-18T11:49:35,085 Destination directory: /tmp/pip-wheel-4qx7st2m 2023-09-18T11:49:35,087 Building wheel for glycopeptidepy (pyproject.toml): started 2023-09-18T11:49:35,088 Running command Building wheel for glycopeptidepy (pyproject.toml) 2023-09-18T11:49:37,978 running bdist_wheel 2023-09-18T11:49:38,015 running build 2023-09-18T11:49:38,016 running build_py 2023-09-18T11:49:38,025 creating build 2023-09-18T11:49:38,025 creating build/lib.linux-armv7l-cpython-311 2023-09-18T11:49:38,026 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T11:49:38,027 copying glycopeptidepy/enzyme.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T11:49:38,029 copying glycopeptidepy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T11:49:38,031 copying glycopeptidepy/version.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T11:49:38,032 copying glycopeptidepy/algorithm.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T11:49:38,035 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T11:49:38,036 copying glycopeptidepy/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T11:49:38,038 copying glycopeptidepy/utils/iterators.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T11:49:38,040 copying glycopeptidepy/utils/intervals.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T11:49:38,042 copying glycopeptidepy/utils/collectiontools.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T11:49:38,044 copying glycopeptidepy/utils/sequence_tree.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T11:49:38,046 copying glycopeptidepy/utils/memoize.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T11:49:38,049 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T11:49:38,050 copying glycopeptidepy/io/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T11:49:38,052 copying glycopeptidepy/io/mzid.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T11:49:38,054 copying glycopeptidepy/io/annotation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T11:49:38,056 copying glycopeptidepy/io/utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T11:49:38,057 copying glycopeptidepy/io/uniprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T11:49:38,060 copying glycopeptidepy/io/fasta.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T11:49:38,063 copying glycopeptidepy/io/nextprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T11:49:38,065 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:49:38,066 copying glycopeptidepy/test/test_enzyme.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:49:38,068 copying glycopeptidepy/test/test_fragmentation_strategy.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:49:38,070 copying glycopeptidepy/test/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:49:38,072 copying glycopeptidepy/test/test_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:49:38,075 copying glycopeptidepy/test/test_sequence_composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:49:38,077 copying glycopeptidepy/test/test_utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:49:38,078 copying glycopeptidepy/test/test_algorithms.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:49:38,080 copying glycopeptidepy/test/test_residue.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:49:38,082 copying glycopeptidepy/test/test_fasta.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:49:38,084 copying glycopeptidepy/test/test_fragment.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:49:38,086 copying glycopeptidepy/test/common.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:49:38,087 copying glycopeptidepy/test/test_modification.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:49:38,089 copying glycopeptidepy/test/test_intervals.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:49:38,091 copying glycopeptidepy/test/test_uniprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T11:49:38,093 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:49:38,094 copying glycopeptidepy/_c/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:49:38,100 copying glycopeptidepy/_c/cythonize.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:49:38,102 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:49:38,103 copying glycopeptidepy/structure/composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:49:38,105 copying glycopeptidepy/structure/residue.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:49:38,107 copying glycopeptidepy/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:49:38,109 copying glycopeptidepy/structure/fragment.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:49:38,111 copying glycopeptidepy/structure/parser.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:49:38,113 copying glycopeptidepy/structure/glycan.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:49:38,116 copying glycopeptidepy/structure/constants.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:49:38,117 copying glycopeptidepy/structure/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:49:38,119 copying glycopeptidepy/structure/terminal_group.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:49:38,121 copying glycopeptidepy/structure/sequence_composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T11:49:38,124 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T11:49:38,125 copying glycopeptidepy/io/cv/uniprot_ptm.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T11:49:38,127 copying glycopeptidepy/io/cv/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T11:49:38,128 copying glycopeptidepy/io/cv/peff.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T11:49:38,130 copying glycopeptidepy/io/cv/term.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T11:49:38,133 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:49:38,134 copying glycopeptidepy/_c/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:49:38,136 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:49:38,137 copying glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:49:38,139 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:49:38,140 copying glycopeptidepy/_c/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:49:38,142 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:49:38,143 copying glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:49:38,145 copying glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:49:38,147 copying glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:49:38,151 copying glycopeptidepy/structure/fragmentation_strategy/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:49:38,153 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T11:49:38,154 copying glycopeptidepy/structure/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T11:49:38,156 copying glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T11:49:38,159 copying glycopeptidepy/structure/sequence/implementation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T11:49:38,161 copying glycopeptidepy/structure/sequence/mutable_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T11:49:38,163 copying glycopeptidepy/structure/sequence/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T11:49:38,166 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T11:49:38,167 copying glycopeptidepy/structure/modification/rule.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T11:49:38,171 copying glycopeptidepy/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T11:49:38,173 copying glycopeptidepy/structure/modification/utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T11:49:38,175 copying glycopeptidepy/structure/modification/modification.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T11:49:38,178 copying glycopeptidepy/structure/modification/descriptors.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T11:49:38,180 copying glycopeptidepy/structure/modification/glycosylation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T11:49:38,183 copying glycopeptidepy/structure/modification/target.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T11:49:38,186 copying glycopeptidepy/structure/modification/source.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T11:49:38,188 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T11:49:38,190 copying glycopeptidepy/structure/modification/data/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T11:49:38,192 copying glycopeptidepy/structure/modification/data/unimod.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T11:49:38,196 copying glycopeptidepy/structure/modification/data/patch_unimod.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T11:49:38,199 running egg_info 2023-09-18T11:49:38,206 writing glycopeptidepy.egg-info/PKG-INFO 2023-09-18T11:49:38,209 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2023-09-18T11:49:38,211 writing requirements to glycopeptidepy.egg-info/requires.txt 2023-09-18T11:49:38,212 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2023-09-18T11:49:38,233 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T11:49:38,237 reading manifest template 'MANIFEST.in' 2023-09-18T11:49:38,238 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-18T11:49:38,239 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-18T11:49:38,424 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T11:49:38,430 copying glycopeptidepy/_c/algorithm.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:49:38,443 copying glycopeptidepy/_c/algorithm.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:49:38,446 copying glycopeptidepy/_c/collectiontools.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:49:38,455 copying glycopeptidepy/_c/collectiontools.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:49:38,456 copying glycopeptidepy/_c/collectiontools.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:49:38,458 copying glycopeptidepy/_c/compat.h -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:49:38,460 copying glycopeptidepy/_c/compat.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:49:38,462 copying glycopeptidepy/_c/count_table.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:49:38,487 copying glycopeptidepy/_c/count_table.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:49:38,488 copying glycopeptidepy/_c/count_table.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:49:38,491 copying glycopeptidepy/_c/parser.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:49:38,501 copying glycopeptidepy/_c/parser.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:49:38,503 copying glycopeptidepy/_c/parser.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:49:38,506 copying glycopeptidepy/_c/structure/base.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:49:38,528 copying glycopeptidepy/_c/structure/base.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:49:38,530 copying glycopeptidepy/_c/structure/base.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:49:38,533 copying glycopeptidepy/_c/structure/constants.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:49:38,542 copying glycopeptidepy/_c/structure/constants.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:49:38,544 copying glycopeptidepy/_c/structure/constants.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:49:38,546 copying glycopeptidepy/_c/structure/fragment.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:49:38,575 copying glycopeptidepy/_c/structure/fragment.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:49:38,577 copying glycopeptidepy/_c/structure/fragment.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:49:38,580 copying glycopeptidepy/_c/structure/glycan.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:49:38,598 copying glycopeptidepy/_c/structure/glycan.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:49:38,600 copying glycopeptidepy/_c/structure/glycan.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:49:38,602 copying glycopeptidepy/_c/structure/sequence_methods.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:49:38,620 copying glycopeptidepy/_c/structure/sequence_methods.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:49:38,622 copying glycopeptidepy/_c/structure/sequence_methods.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:49:38,625 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:49:38,635 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:49:38,637 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:49:38,639 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:49:38,668 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:49:38,670 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:49:38,673 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:49:38,700 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:49:38,702 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:49:38,704 copying glycopeptidepy/_c/structure/modification/modification.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:49:38,713 copying glycopeptidepy/_c/structure/modification/modification.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:49:38,715 copying glycopeptidepy/_c/structure/modification/modification.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:49:38,717 copying glycopeptidepy/_c/structure/modification/rule.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:49:38,730 copying glycopeptidepy/_c/structure/modification/rule.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:49:38,732 copying glycopeptidepy/_c/structure/modification/rule.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:49:38,734 copying glycopeptidepy/_c/structure/modification/source.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:49:38,744 copying glycopeptidepy/_c/structure/modification/source.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:49:38,746 copying glycopeptidepy/_c/structure/modification/source.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:49:38,748 copying glycopeptidepy/_c/structure/modification/target.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:49:38,750 copying glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T11:49:38,752 copying glycopeptidepy/structure/modification/data/unimod.json -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T11:49:38,789 running build_ext 2023-09-18T11:49:38,798 building 'glycopeptidepy._c.collectiontools' extension 2023-09-18T11:49:38,799 creating build/temp.linux-armv7l-cpython-311 2023-09-18T11:49:38,799 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T11:49:38,800 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T11:49:38,800 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/collectiontools.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.o 2023-09-18T11:49:45,594 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:49:45,707 building 'glycopeptidepy._c.count_table' extension 2023-09-18T11:49:45,707 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/count_table.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.o 2023-09-18T11:49:47,488 glycopeptidepy/_c/count_table.c:4460:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist’ defined but not used [-Wunused-function] 2023-09-18T11:49:47,489 4460 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist(size_t __pyx_v_n, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_inst) { 2023-09-18T11:49:47,489 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-18T11:49:47,492 glycopeptidepy/_c/count_table.c:4189:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get’ defined but not used [-Wunused-function] 2023-09-18T11:49:47,492 4189 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2023-09-18T11:49:47,493 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-18T11:49:47,495 glycopeptidepy/_c/count_table.c:3947:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put’ defined but not used [-Wunused-function] 2023-09-18T11:49:47,496 3947 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2023-09-18T11:49:47,497 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-18T11:50:02,759 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:50:02,883 building 'glycopeptidepy._c.parser' extension 2023-09-18T11:50:02,884 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iglycopeptidepy/_c -I/usr/include/python3.11 -c glycopeptidepy/_c/parser.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.o 2023-09-18T11:50:03,275 In file included from glycopeptidepy/_c/parser.c:1187: 2023-09-18T11:50:03,276 glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2023-09-18T11:50:03,277 38 | #define PyInt_Check PyLong_Check 2023-09-18T11:50:03,277 | 2023-09-18T11:50:03,278 glycopeptidepy/_c/parser.c:1085: note: this is the location of the previous definition 2023-09-18T11:50:03,279 1085 | #define PyInt_Check(op) PyLong_Check(op) 2023-09-18T11:50:03,280 | 2023-09-18T11:50:03,281 glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2023-09-18T11:50:03,281 39 | #define PyInt_CheckExact PyLong_CheckExact 2023-09-18T11:50:03,282 | 2023-09-18T11:50:03,283 glycopeptidepy/_c/parser.c:1086: note: this is the location of the previous definition 2023-09-18T11:50:03,283 1086 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2023-09-18T11:50:03,284 | 2023-09-18T11:50:03,298 glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser__cstring_sequence_tokenizer’: 2023-09-18T11:50:03,301 glycopeptidepy/_c/parser.c:3603:21: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T11:50:03,302 3603 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2023-09-18T11:50:03,302 | ^ 2023-09-18T11:50:03,371 glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser_parse_simple’: 2023-09-18T11:50:03,377 glycopeptidepy/_c/parser.c:7712:23: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T11:50:03,378 7712 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2023-09-18T11:50:03,378 | ^ 2023-09-18T11:50:10,807 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:50:10,915 building 'glycopeptidepy._c.structure.base' extension 2023-09-18T11:50:10,916 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T11:50:10,916 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/base.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.o 2023-09-18T11:50:32,314 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:50:32,452 building 'glycopeptidepy._c.structure.fragment' extension 2023-09-18T11:50:32,453 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iglycopeptidepy/_c -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/fragment.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.o 2023-09-18T11:50:32,825 In file included from glycopeptidepy/_c/structure/fragment.c:1188: 2023-09-18T11:50:32,826 glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2023-09-18T11:50:32,827 38 | #define PyInt_Check PyLong_Check 2023-09-18T11:50:32,827 | 2023-09-18T11:50:32,828 glycopeptidepy/_c/structure/fragment.c:1085: note: this is the location of the previous definition 2023-09-18T11:50:32,829 1085 | #define PyInt_Check(op) PyLong_Check(op) 2023-09-18T11:50:32,829 | 2023-09-18T11:50:32,830 glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2023-09-18T11:50:32,830 39 | #define PyInt_CheckExact PyLong_CheckExact 2023-09-18T11:50:32,831 | 2023-09-18T11:50:32,832 glycopeptidepy/_c/structure/fragment.c:1086: note: this is the location of the previous definition 2023-09-18T11:50:32,833 1086 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2023-09-18T11:50:32,834 | 2023-09-18T11:50:32,876 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_init_str_ints’: 2023-09-18T11:50:32,882 glycopeptidepy/_c/structure/fragment.c:5798:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T11:50:32,883 5798 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2023-09-18T11:50:32,883 | ^ 2023-09-18T11:50:32,886 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_get_str_int’: 2023-09-18T11:50:32,891 glycopeptidepy/_c/structure/fragment.c:6027:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T11:50:32,892 6027 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2023-09-18T11:50:32,892 | ^ 2023-09-18T11:50:33,132 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_15PeptideFragment_get_fragment_name’: 2023-09-18T11:50:33,146 glycopeptidepy/_c/structure/fragment.c:14261:22: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T11:50:33,146 14261 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-18T11:50:33,147 | ^ 2023-09-18T11:50:33,166 glycopeptidepy/_c/structure/fragment.c:14576:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T11:50:33,167 14576 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-18T11:50:33,167 | ^ 2023-09-18T11:50:33,182 glycopeptidepy/_c/structure/fragment.c:14749:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T11:50:33,183 14749 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-18T11:50:33,183 | ^ 2023-09-18T11:50:33,198 glycopeptidepy/_c/structure/fragment.c:14926:24: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T11:50:33,199 14926 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-18T11:50:33,199 | ^ 2023-09-18T11:51:10,249 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:51:10,406 building 'glycopeptidepy._c.structure.constants' extension 2023-09-18T11:51:10,407 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/constants.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.o 2023-09-18T11:51:16,437 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:51:16,547 building 'glycopeptidepy._c.structure.glycan' extension 2023-09-18T11:51:16,548 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/glycan.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.o 2023-09-18T11:51:39,331 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:51:39,463 building 'glycopeptidepy._c.structure.sequence_methods' extension 2023-09-18T11:51:39,464 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/sequence_methods.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.o 2023-09-18T11:51:40,130 glycopeptidepy/_c/structure/sequence_methods.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_16sequence_methods_add_modification’: 2023-09-18T11:51:40,144 glycopeptidepy/_c/structure/sequence_methods.c:14874:36: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-18T11:51:40,144 14874 | __pyx_t_7 = (__pyx_v_position_ >= __pyx_t_8); 2023-09-18T11:51:40,145 | ^~ 2023-09-18T11:52:00,427 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:52:00,553 building 'glycopeptidepy._c.structure.modification.rule' extension 2023-09-18T11:52:00,554 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T11:52:00,554 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/modification/rule.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.o 2023-09-18T11:52:12,941 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:52:13,058 building 'glycopeptidepy._c.structure.modification.modification' extension 2023-09-18T11:52:13,059 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/modification/modification.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.o 2023-09-18T11:52:21,071 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:52:21,185 building 'glycopeptidepy._c.structure.modification.source' extension 2023-09-18T11:52:21,186 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/modification/source.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.o 2023-09-18T11:52:29,204 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:52:29,319 building 'glycopeptidepy._c.structure.fragmentation_strategy.base' extension 2023-09-18T11:52:29,320 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:52:29,321 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/fragmentation_strategy/base.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.o 2023-09-18T11:52:38,677 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:52:39,135 building 'glycopeptidepy._c.structure.fragmentation_strategy.peptide' extension 2023-09-18T11:52:39,136 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o 2023-09-18T11:53:11,124 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:53:11,513 building 'glycopeptidepy._c.structure.fragmentation_strategy.glycan' extension 2023-09-18T11:53:11,514 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o 2023-09-18T11:53:12,176 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_fucosylate_extended’: 2023-09-18T11:53:12,189 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:12964:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2023-09-18T11:53:12,189 12964 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-09-18T11:53:12,190 | ^ 2023-09-18T11:53:12,202 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:12981:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2023-09-18T11:53:12,203 12981 | for (__pyx_t_9 = 1; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-09-18T11:53:12,204 | ^ 2023-09-18T11:53:12,340 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_n_glycan_stub_fragments’: 2023-09-18T11:53:12,357 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17284:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-18T11:53:12,358 17284 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-09-18T11:53:12,358 | ^ 2023-09-18T11:53:12,379 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_o_glycan_stub_fragments’: 2023-09-18T11:53:12,397 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17967:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-09-18T11:53:12,398 17967 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_15; __pyx_t_9+=1) { 2023-09-18T11:53:12,398 | ^ 2023-09-18T11:53:12,456 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_gag_linker_stub_fragments’: 2023-09-18T11:53:12,475 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:19885:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-09-18T11:53:12,476 19885 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_15; __pyx_t_9+=1) { 2023-09-18T11:53:12,476 | ^ 2023-09-18T11:53:12,530 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_mixed_stub_fragments’: 2023-09-18T11:53:12,550 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:21214:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-18T11:53:12,551 21214 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-09-18T11:53:12,551 | ^ 2023-09-18T11:53:12,573 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:21273:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-18T11:53:12,574 21273 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-09-18T11:53:12,574 | ^ 2023-09-18T11:53:12,595 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:21332:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-18T11:53:12,596 21332 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-09-18T11:53:12,597 | ^ 2023-09-18T11:53:45,140 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:53:45,294 building 'glycopeptidepy._c.algorithm' extension 2023-09-18T11:53:45,294 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/algorithm.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.o 2023-09-18T11:53:59,561 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so 2023-09-18T11:53:59,691 installing to build/bdist.linux-armv7l/wheel 2023-09-18T11:53:59,692 running install 2023-09-18T11:53:59,716 running install_lib 2023-09-18T11:53:59,724 creating build/bdist.linux-armv7l 2023-09-18T11:53:59,724 creating build/bdist.linux-armv7l/wheel 2023-09-18T11:53:59,726 creating build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T11:53:59,728 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T11:53:59,729 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T11:53:59,731 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/iterators.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T11:53:59,734 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T11:53:59,736 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/collectiontools.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T11:53:59,738 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/sequence_tree.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T11:53:59,740 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/memoize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T11:53:59,742 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T11:53:59,745 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T11:53:59,747 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T11:53:59,748 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T11:53:59,750 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/mzid.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T11:53:59,752 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/annotation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T11:53:59,754 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T11:53:59,757 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T11:53:59,758 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T11:53:59,760 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T11:53:59,761 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/peff.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T11:53:59,763 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/term.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T11:53:59,766 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T11:53:59,768 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T11:53:59,771 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/nextprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T11:53:59,773 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:53:59,775 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:53:59,777 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_fragmentation_strategy.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:53:59,779 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:53:59,780 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:53:59,783 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:53:59,785 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:53:59,786 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_algorithms.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:53:59,788 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:53:59,790 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:53:59,792 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:53:59,794 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/common.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:53:59,796 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:53:59,798 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:53:59,800 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T11:53:59,802 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:53:59,803 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:53:59,820 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:53:59,822 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:53:59,825 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:53:59,838 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/compat.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:53:59,839 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:53:59,849 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:53:59,851 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:53:59,868 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:53:59,870 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:53:59,878 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:53:59,888 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:53:59,890 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:53:59,893 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:53:59,894 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:53:59,910 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:53:59,911 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:53:59,920 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:53:59,922 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:53:59,924 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:53:59,955 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:53:59,957 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:53:59,986 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:54:00,014 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:54:00,016 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:54:00,018 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:54:00,032 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:54:00,035 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:54:00,038 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T11:54:00,073 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,075 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,078 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,081 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,114 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,117 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,156 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,176 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,178 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,185 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,187 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,188 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,208 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:54:00,209 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:54:00,211 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:54:00,213 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:54:00,214 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:54:00,232 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:54:00,255 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:54:00,286 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:54:00,304 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:54:00,316 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/target.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:54:00,318 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:54:00,321 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:54:00,323 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:54:00,325 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:54:00,341 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T11:54:00,344 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,346 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,377 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,386 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,388 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,403 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,406 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,408 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T11:54:00,432 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/compat.h -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:54:00,434 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:54:00,447 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/cythonize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:54:00,449 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:54:00,459 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:54:00,461 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T11:54:00,463 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/version.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T11:54:00,466 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:54:00,467 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:54:00,468 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:54:00,470 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:54:00,473 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:54:00,477 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T11:54:00,479 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:54:00,481 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:54:00,483 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:54:00,486 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:54:00,488 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/parser.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:54:00,492 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T11:54:00,493 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T11:54:00,495 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T11:54:00,498 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/implementation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T11:54:00,500 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T11:54:00,503 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T11:54:00,505 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:54:00,508 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T11:54:00,510 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/rule.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T11:54:00,513 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T11:54:00,515 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T11:54:00,517 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T11:54:00,519 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T11:54:00,521 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/unimod.json -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T11:54:00,557 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T11:54:00,559 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T11:54:00,560 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T11:54:00,562 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T11:54:00,564 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/descriptors.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T11:54:00,566 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/glycosylation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T11:54:00,569 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/target.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T11:54:00,571 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/source.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T11:54:00,573 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/constants.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:54:00,575 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:54:00,577 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/terminal_group.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:54:00,579 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T11:54:00,581 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/algorithm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T11:54:00,583 running install_egg_info 2023-09-18T11:54:00,596 Copying glycopeptidepy.egg-info to build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.18-py3.11.egg-info 2023-09-18T11:54:00,608 running install_scripts 2023-09-18T11:54:00,654 creating build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.18.dist-info/WHEEL 2023-09-18T11:54:00,656 creating '/tmp/pip-wheel-4qx7st2m/.tmp-0xwe4mve/glycopeptidepy-0.0.18-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-18T11:54:00,659 adding 'glycopeptidepy/__init__.py' 2023-09-18T11:54:00,661 adding 'glycopeptidepy/algorithm.py' 2023-09-18T11:54:00,663 adding 'glycopeptidepy/enzyme.py' 2023-09-18T11:54:00,665 adding 'glycopeptidepy/version.py' 2023-09-18T11:54:00,667 adding 'glycopeptidepy/_c/__init__.py' 2023-09-18T11:54:00,723 adding 'glycopeptidepy/_c/algorithm.c' 2023-09-18T11:54:00,871 adding 'glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:54:00,880 adding 'glycopeptidepy/_c/algorithm.pyx' 2023-09-18T11:54:00,934 adding 'glycopeptidepy/_c/collectiontools.c' 2023-09-18T11:54:01,022 adding 'glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:54:01,025 adding 'glycopeptidepy/_c/collectiontools.pxd' 2023-09-18T11:54:01,027 adding 'glycopeptidepy/_c/collectiontools.pyx' 2023-09-18T11:54:01,028 adding 'glycopeptidepy/_c/compat.h' 2023-09-18T11:54:01,029 adding 'glycopeptidepy/_c/compat.pxd' 2023-09-18T11:54:01,095 adding 'glycopeptidepy/_c/count_table.c' 2023-09-18T11:54:01,251 adding 'glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:54:01,257 adding 'glycopeptidepy/_c/count_table.pxd' 2023-09-18T11:54:01,261 adding 'glycopeptidepy/_c/count_table.pyx' 2023-09-18T11:54:01,262 adding 'glycopeptidepy/_c/cythonize.py' 2023-09-18T11:54:01,304 adding 'glycopeptidepy/_c/parser.c' 2023-09-18T11:54:01,389 adding 'glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:54:01,393 adding 'glycopeptidepy/_c/parser.pxd' 2023-09-18T11:54:01,395 adding 'glycopeptidepy/_c/parser.pyx' 2023-09-18T11:54:01,397 adding 'glycopeptidepy/_c/structure/__init__.py' 2023-09-18T11:54:01,472 adding 'glycopeptidepy/_c/structure/base.c' 2023-09-18T11:54:01,678 adding 'glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:54:01,687 adding 'glycopeptidepy/_c/structure/base.pxd' 2023-09-18T11:54:01,689 adding 'glycopeptidepy/_c/structure/base.pyx' 2023-09-18T11:54:01,721 adding 'glycopeptidepy/_c/structure/constants.c' 2023-09-18T11:54:01,790 adding 'glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:54:01,793 adding 'glycopeptidepy/_c/structure/constants.pxd' 2023-09-18T11:54:01,795 adding 'glycopeptidepy/_c/structure/constants.pyx' 2023-09-18T11:54:01,904 adding 'glycopeptidepy/_c/structure/fragment.c' 2023-09-18T11:54:02,213 adding 'glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:54:02,226 adding 'glycopeptidepy/_c/structure/fragment.pxd' 2023-09-18T11:54:02,229 adding 'glycopeptidepy/_c/structure/fragment.pyx' 2023-09-18T11:54:02,303 adding 'glycopeptidepy/_c/structure/glycan.c' 2023-09-18T11:54:02,517 adding 'glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:54:02,526 adding 'glycopeptidepy/_c/structure/glycan.pxd' 2023-09-18T11:54:02,528 adding 'glycopeptidepy/_c/structure/glycan.pyx' 2023-09-18T11:54:02,601 adding 'glycopeptidepy/_c/structure/sequence_methods.c' 2023-09-18T11:54:02,791 adding 'glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:54:02,799 adding 'glycopeptidepy/_c/structure/sequence_methods.pxd' 2023-09-18T11:54:02,802 adding 'glycopeptidepy/_c/structure/sequence_methods.pyx' 2023-09-18T11:54:02,804 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py' 2023-09-18T11:54:02,846 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.c' 2023-09-18T11:54:02,933 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:54:02,937 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd' 2023-09-18T11:54:02,938 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx' 2023-09-18T11:54:03,044 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c' 2023-09-18T11:54:03,335 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:54:03,348 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd' 2023-09-18T11:54:03,352 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx' 2023-09-18T11:54:03,450 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c' 2023-09-18T11:54:03,722 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:54:03,735 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd' 2023-09-18T11:54:03,737 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx' 2023-09-18T11:54:03,739 adding 'glycopeptidepy/_c/structure/modification/__init__.py' 2023-09-18T11:54:03,779 adding 'glycopeptidepy/_c/structure/modification/modification.c' 2023-09-18T11:54:03,865 adding 'glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:54:03,870 adding 'glycopeptidepy/_c/structure/modification/modification.pxd' 2023-09-18T11:54:03,871 adding 'glycopeptidepy/_c/structure/modification/modification.pyx' 2023-09-18T11:54:03,923 adding 'glycopeptidepy/_c/structure/modification/rule.c' 2023-09-18T11:54:04,055 adding 'glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:54:04,061 adding 'glycopeptidepy/_c/structure/modification/rule.pxd' 2023-09-18T11:54:04,062 adding 'glycopeptidepy/_c/structure/modification/rule.pyx' 2023-09-18T11:54:04,102 adding 'glycopeptidepy/_c/structure/modification/source.c' 2023-09-18T11:54:04,189 adding 'glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T11:54:04,194 adding 'glycopeptidepy/_c/structure/modification/source.pxd' 2023-09-18T11:54:04,195 adding 'glycopeptidepy/_c/structure/modification/source.pyx' 2023-09-18T11:54:04,196 adding 'glycopeptidepy/_c/structure/modification/target.pyx' 2023-09-18T11:54:04,198 adding 'glycopeptidepy/io/__init__.py' 2023-09-18T11:54:04,200 adding 'glycopeptidepy/io/annotation.py' 2023-09-18T11:54:04,204 adding 'glycopeptidepy/io/fasta.py' 2023-09-18T11:54:04,205 adding 'glycopeptidepy/io/mzid.py' 2023-09-18T11:54:04,206 adding 'glycopeptidepy/io/nextprot.py' 2023-09-18T11:54:04,209 adding 'glycopeptidepy/io/uniprot.py' 2023-09-18T11:54:04,211 adding 'glycopeptidepy/io/utils.py' 2023-09-18T11:54:04,212 adding 'glycopeptidepy/io/cv/__init__.py' 2023-09-18T11:54:04,214 adding 'glycopeptidepy/io/cv/peff.py' 2023-09-18T11:54:04,216 adding 'glycopeptidepy/io/cv/term.py' 2023-09-18T11:54:04,217 adding 'glycopeptidepy/io/cv/uniprot_ptm.py' 2023-09-18T11:54:04,219 adding 'glycopeptidepy/structure/__init__.py' 2023-09-18T11:54:04,220 adding 'glycopeptidepy/structure/base.py' 2023-09-18T11:54:04,221 adding 'glycopeptidepy/structure/composition.py' 2023-09-18T11:54:04,223 adding 'glycopeptidepy/structure/constants.py' 2023-09-18T11:54:04,225 adding 'glycopeptidepy/structure/fragment.py' 2023-09-18T11:54:04,227 adding 'glycopeptidepy/structure/glycan.py' 2023-09-18T11:54:04,229 adding 'glycopeptidepy/structure/parser.py' 2023-09-18T11:54:04,231 adding 'glycopeptidepy/structure/residue.py' 2023-09-18T11:54:04,233 adding 'glycopeptidepy/structure/sequence_composition.py' 2023-09-18T11:54:04,234 adding 'glycopeptidepy/structure/terminal_group.py' 2023-09-18T11:54:04,236 adding 'glycopeptidepy/structure/fragmentation_strategy/__init__.py' 2023-09-18T11:54:04,237 adding 'glycopeptidepy/structure/fragmentation_strategy/base.py' 2023-09-18T11:54:04,241 adding 'glycopeptidepy/structure/fragmentation_strategy/glycan.py' 2023-09-18T11:54:04,244 adding 'glycopeptidepy/structure/fragmentation_strategy/peptide.py' 2023-09-18T11:54:04,246 adding 'glycopeptidepy/structure/modification/__init__.py' 2023-09-18T11:54:04,247 adding 'glycopeptidepy/structure/modification/descriptors.py' 2023-09-18T11:54:04,249 adding 'glycopeptidepy/structure/modification/glycosylation.py' 2023-09-18T11:54:04,250 adding 'glycopeptidepy/structure/modification/modification.py' 2023-09-18T11:54:04,254 adding 'glycopeptidepy/structure/modification/rule.py' 2023-09-18T11:54:04,256 adding 'glycopeptidepy/structure/modification/source.py' 2023-09-18T11:54:04,258 adding 'glycopeptidepy/structure/modification/target.py' 2023-09-18T11:54:04,259 adding 'glycopeptidepy/structure/modification/utils.py' 2023-09-18T11:54:04,261 adding 'glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv' 2023-09-18T11:54:04,262 adding 'glycopeptidepy/structure/modification/data/__init__.py' 2023-09-18T11:54:04,263 adding 'glycopeptidepy/structure/modification/data/patch_unimod.py' 2023-09-18T11:54:04,327 adding 'glycopeptidepy/structure/modification/data/unimod.json' 2023-09-18T11:54:04,344 adding 'glycopeptidepy/structure/modification/data/unimod.py' 2023-09-18T11:54:04,346 adding 'glycopeptidepy/structure/sequence/__init__.py' 2023-09-18T11:54:04,348 adding 'glycopeptidepy/structure/sequence/base.py' 2023-09-18T11:54:04,349 adding 'glycopeptidepy/structure/sequence/glycosylated_sequence.py' 2023-09-18T11:54:04,351 adding 'glycopeptidepy/structure/sequence/implementation.py' 2023-09-18T11:54:04,352 adding 'glycopeptidepy/structure/sequence/mutable_sequence.py' 2023-09-18T11:54:04,354 adding 'glycopeptidepy/test/__init__.py' 2023-09-18T11:54:04,355 adding 'glycopeptidepy/test/common.py' 2023-09-18T11:54:04,356 adding 'glycopeptidepy/test/test_algorithms.py' 2023-09-18T11:54:04,358 adding 'glycopeptidepy/test/test_enzyme.py' 2023-09-18T11:54:04,359 adding 'glycopeptidepy/test/test_fasta.py' 2023-09-18T11:54:04,361 adding 'glycopeptidepy/test/test_fragment.py' 2023-09-18T11:54:04,362 adding 'glycopeptidepy/test/test_fragmentation_strategy.py' 2023-09-18T11:54:04,363 adding 'glycopeptidepy/test/test_intervals.py' 2023-09-18T11:54:04,365 adding 'glycopeptidepy/test/test_modification.py' 2023-09-18T11:54:04,366 adding 'glycopeptidepy/test/test_residue.py' 2023-09-18T11:54:04,368 adding 'glycopeptidepy/test/test_sequence.py' 2023-09-18T11:54:04,369 adding 'glycopeptidepy/test/test_sequence_composition.py' 2023-09-18T11:54:04,370 adding 'glycopeptidepy/test/test_uniprot.py' 2023-09-18T11:54:04,371 adding 'glycopeptidepy/test/test_utils.py' 2023-09-18T11:54:04,373 adding 'glycopeptidepy/utils/__init__.py' 2023-09-18T11:54:04,374 adding 'glycopeptidepy/utils/collectiontools.py' 2023-09-18T11:54:04,377 adding 'glycopeptidepy/utils/intervals.py' 2023-09-18T11:54:04,378 adding 'glycopeptidepy/utils/iterators.py' 2023-09-18T11:54:04,379 adding 'glycopeptidepy/utils/memoize.py' 2023-09-18T11:54:04,381 adding 'glycopeptidepy/utils/sequence_tree.py' 2023-09-18T11:54:04,383 adding 'glycopeptidepy-0.0.18.dist-info/METADATA' 2023-09-18T11:54:04,383 adding 'glycopeptidepy-0.0.18.dist-info/WHEEL' 2023-09-18T11:54:04,384 adding 'glycopeptidepy-0.0.18.dist-info/top_level.txt' 2023-09-18T11:54:04,387 adding 'glycopeptidepy-0.0.18.dist-info/RECORD' 2023-09-18T11:54:04,457 removing build/bdist.linux-armv7l/wheel 2023-09-18T11:54:04,652 Building wheel for glycopeptidepy (pyproject.toml): finished with status 'done' 2023-09-18T11:54:04,800 Created wheel for glycopeptidepy: filename=glycopeptidepy-0.0.18-cp311-cp311-linux_armv7l.whl size=6356704 sha256=9799547540429b921289ae7717afbfed32b01010bb3170553ef36db70f98f657 2023-09-18T11:54:04,801 Stored in directory: /tmp/pip-ephem-wheel-cache-oi96fpiw/wheels/b6/16/ae/1a302d8990ba961342eb8ef4bc09b6fc8553c5eea8d9a4b96b 2023-09-18T11:54:04,816 Successfully built glycopeptidepy 2023-09-18T11:54:04,972 Removed build tracker: '/tmp/pip-build-tracker-3s6lmal0'