2023-09-18T15:20:13,571 Created temporary directory: /tmp/pip-build-tracker-lzv98h9y 2023-09-18T15:20:13,572 Initialized build tracking at /tmp/pip-build-tracker-lzv98h9y 2023-09-18T15:20:13,573 Created build tracker: /tmp/pip-build-tracker-lzv98h9y 2023-09-18T15:20:13,573 Entered build tracker: /tmp/pip-build-tracker-lzv98h9y 2023-09-18T15:20:13,574 Created temporary directory: /tmp/pip-wheel-rp1ps7tm 2023-09-18T15:20:13,577 Created temporary directory: /tmp/pip-ephem-wheel-cache-c737scbq 2023-09-18T15:20:13,602 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-18T15:20:13,606 2 location(s) to search for versions of biolink-model: 2023-09-18T15:20:13,606 * https://pypi.org/simple/biolink-model/ 2023-09-18T15:20:13,606 * https://www.piwheels.org/simple/biolink-model/ 2023-09-18T15:20:13,607 Fetching project page and analyzing links: https://pypi.org/simple/biolink-model/ 2023-09-18T15:20:13,607 Getting page https://pypi.org/simple/biolink-model/ 2023-09-18T15:20:13,609 Found index url https://pypi.org/simple/ 2023-09-18T15:20:13,833 Fetched page https://pypi.org/simple/biolink-model/ as application/vnd.pypi.simple.v1+json 2023-09-18T15:20:13,851 Skipping link: No binaries permitted for biolink-model: https://files.pythonhosted.org/packages/80/c5/10448ca87ee7b01a84d58cc02baa88947efa6078ff0fab90b2b52cbb5390/biolink_model-1.2.1-py3-none-any.whl (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7) 2023-09-18T15:20:13,852 Skipping link: No binaries permitted for biolink-model: https://files.pythonhosted.org/packages/7f/da/36fca531508faadf77efebd2d65e2f43963afd84b8a4aaf3bbda517645f6/biolink_model-1.2.2-py3-none-any.whl (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7) 2023-09-18T15:20:13,852 Found link https://files.pythonhosted.org/packages/37/a3/d8a49c7149d76a6cccbbfe70b9d94ef766a7bce76c41cdbe144b73dc82e0/biolink_model-1.2.2.tar.gz (from https://pypi.org/simple/biolink-model/) 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https://www.piwheels.org/simple/biolink-model/biolink_model-1.2.3-py3-none-any.whl#sha256=882f1d08c2a5605c40c0ae3368dcc1acbf5349c9f9aff243c999f6fa575a1e52 (from https://www.piwheels.org/simple/biolink-model/) (requires-python:>=3.7) 2023-09-18T15:20:15,218 Skipping link: No binaries permitted for biolink-model: https://www.piwheels.org/simple/biolink-model/biolink_model-1.2.2-py3-none-any.whl#sha256=460f615978ea5b78c1736ba23bc4c05f92a8125034eed571f83a57f1fc06f8fd (from https://www.piwheels.org/simple/biolink-model/) (requires-python:>=3.7) 2023-09-18T15:20:15,219 Skipping link: not a file: https://www.piwheels.org/simple/biolink-model/ 2023-09-18T15:20:15,220 Skipping link: not a file: https://pypi.org/simple/biolink-model/ 2023-09-18T15:20:15,259 Given no hashes to check 1 links for project 'biolink-model': discarding no candidates 2023-09-18T15:20:15,288 Collecting biolink-model==2.4.7 2023-09-18T15:20:15,291 Created temporary directory: /tmp/pip-unpack-nm34p26s 2023-09-18T15:20:15,599 Downloading biolink-model-2.4.7.tar.gz (97 kB) 2023-09-18T15:20:15,730 Added biolink-model==2.4.7 from https://files.pythonhosted.org/packages/20/8d/c94e8cd6c9c30d8dd9eee12cc4ab2f65ed8e0e081c005586ecfbf1b41cd3/biolink-model-2.4.7.tar.gz to build tracker '/tmp/pip-build-tracker-lzv98h9y' 2023-09-18T15:20:15,732 Running setup.py (path:/tmp/pip-wheel-rp1ps7tm/biolink-model_dd93170c00254351a9215f810fb17124/setup.py) egg_info for package biolink-model 2023-09-18T15:20:15,733 Created temporary directory: /tmp/pip-pip-egg-info-ze68p4ub 2023-09-18T15:20:15,734 Preparing metadata (setup.py): started 2023-09-18T15:20:15,735 Running command python setup.py egg_info 2023-09-18T15:20:16,186 Traceback (most recent call last): 2023-09-18T15:20:16,186 File "", line 2, in 2023-09-18T15:20:16,187 File "", line 34, in 2023-09-18T15:20:16,188 File "/tmp/pip-wheel-rp1ps7tm/biolink-model_dd93170c00254351a9215f810fb17124/setup.py", line 5, in 2023-09-18T15:20:16,189 with open("requirements.txt", "r") as FH: 2023-09-18T15:20:16,190 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-18T15:20:16,190 FileNotFoundError: [Errno 2] No such file or directory: 'requirements.txt' 2023-09-18T15:20:16,256 ERROR: [present-rich] python setup.py egg_info exited with 1 2023-09-18T15:20:16,269 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2023-09-18T15:20:16,269 exec(compile('"'"''"'"''"'"' 2023-09-18T15:20:16,269 # This is -- a caller that pip uses to run setup.py 2023-09-18T15:20:16,269 # 2023-09-18T15:20:16,269 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-18T15:20:16,269 # import from `distutils.core` to work with newer packaging standards. 2023-09-18T15:20:16,269 # - It provides a clear error message when setuptools is not installed. 2023-09-18T15:20:16,269 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-18T15:20:16,269 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-18T15:20:16,269 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-18T15:20:16,269 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-18T15:20:16,269 import os, sys, tokenize 2023-09-18T15:20:16,269 2023-09-18T15:20:16,269 try: 2023-09-18T15:20:16,269 import setuptools 2023-09-18T15:20:16,269 except ImportError as error: 2023-09-18T15:20:16,269 print( 2023-09-18T15:20:16,269 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-18T15:20:16,269 "the build environment.", 2023-09-18T15:20:16,269 file=sys.stderr, 2023-09-18T15:20:16,269 ) 2023-09-18T15:20:16,269 sys.exit(1) 2023-09-18T15:20:16,269 2023-09-18T15:20:16,269 __file__ = %r 2023-09-18T15:20:16,269 sys.argv[0] = __file__ 2023-09-18T15:20:16,269 2023-09-18T15:20:16,269 if os.path.exists(__file__): 2023-09-18T15:20:16,269 filename = __file__ 2023-09-18T15:20:16,269 with tokenize.open(__file__) as f: 2023-09-18T15:20:16,269 setup_py_code = f.read() 2023-09-18T15:20:16,269 else: 2023-09-18T15:20:16,269 filename = "" 2023-09-18T15:20:16,269 setup_py_code = "from setuptools import setup; setup()" 2023-09-18T15:20:16,269 2023-09-18T15:20:16,269 exec(compile(setup_py_code, filename, "exec")) 2023-09-18T15:20:16,269 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-rp1ps7tm/biolink-model_dd93170c00254351a9215f810fb17124/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-ze68p4ub[/] 2023-09-18T15:20:16,269 [bold magenta]cwd[/]: /tmp/pip-wheel-rp1ps7tm/biolink-model_dd93170c00254351a9215f810fb17124/ 2023-09-18T15:20:16,270 Preparing metadata (setup.py): finished with status 'error' 2023-09-18T15:20:16,271 ERROR: [present-rich] metadata generation failed 2023-09-18T15:20:16,277 Exception information: 2023-09-18T15:20:16,277 Traceback (most recent call last): 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2023-09-18T15:20:16,277 call_subprocess( 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-09-18T15:20:16,277 raise error 2023-09-18T15:20:16,277 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2023-09-18T15:20:16,277 2023-09-18T15:20:16,277 The above exception was the direct cause of the following exception: 2023-09-18T15:20:16,277 2023-09-18T15:20:16,277 Traceback (most recent call last): 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-18T15:20:16,277 status = run_func(*args) 2023-09-18T15:20:16,277 ^^^^^^^^^^^^^^^ 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-18T15:20:16,277 return func(self, options, args) 2023-09-18T15:20:16,277 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2023-09-18T15:20:16,277 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-09-18T15:20:16,277 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2023-09-18T15:20:16,277 result = self._result = resolver.resolve( 2023-09-18T15:20:16,277 ^^^^^^^^^^^^^^^^^ 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2023-09-18T15:20:16,277 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-09-18T15:20:16,277 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2023-09-18T15:20:16,277 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2023-09-18T15:20:16,277 if not criterion.candidates: 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2023-09-18T15:20:16,277 return bool(self._sequence) 2023-09-18T15:20:16,277 ^^^^^^^^^^^^^^^^^^^^ 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-09-18T15:20:16,277 return any(self) 2023-09-18T15:20:16,277 ^^^^^^^^^ 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-09-18T15:20:16,277 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-09-18T15:20:16,277 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-09-18T15:20:16,277 candidate = func() 2023-09-18T15:20:16,277 ^^^^^^ 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2023-09-18T15:20:16,277 self._link_candidate_cache[link] = LinkCandidate( 2023-09-18T15:20:16,277 ^^^^^^^^^^^^^^ 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__ 2023-09-18T15:20:16,277 super().__init__( 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__ 2023-09-18T15:20:16,277 self.dist = self._prepare() 2023-09-18T15:20:16,277 ^^^^^^^^^^^^^^^ 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare 2023-09-18T15:20:16,277 dist = self._prepare_distribution() 2023-09-18T15:20:16,277 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution 2023-09-18T15:20:16,277 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-09-18T15:20:16,277 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement 2023-09-18T15:20:16,277 return self._prepare_linked_requirement(req, parallel_builds) 2023-09-18T15:20:16,277 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement 2023-09-18T15:20:16,277 dist = _get_prepared_distribution( 2023-09-18T15:20:16,277 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2023-09-18T15:20:16,277 abstract_dist.prepare_distribution_metadata( 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata 2023-09-18T15:20:16,277 self.req.prepare_metadata() 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata 2023-09-18T15:20:16,277 self.metadata_directory = generate_metadata_legacy( 2023-09-18T15:20:16,277 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-18T15:20:16,277 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2023-09-18T15:20:16,277 raise MetadataGenerationFailed(package_details=details) from error 2023-09-18T15:20:16,277 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2023-09-18T15:20:16,289 Removed biolink-model==2.4.7 from https://files.pythonhosted.org/packages/20/8d/c94e8cd6c9c30d8dd9eee12cc4ab2f65ed8e0e081c005586ecfbf1b41cd3/biolink-model-2.4.7.tar.gz from build tracker '/tmp/pip-build-tracker-lzv98h9y' 2023-09-18T15:20:16,290 Removed build tracker: '/tmp/pip-build-tracker-lzv98h9y'