2023-09-18T15:44:32,697 Created temporary directory: /tmp/pip-build-tracker-habe29zp 2023-09-18T15:44:32,698 Initialized build tracking at /tmp/pip-build-tracker-habe29zp 2023-09-18T15:44:32,698 Created build tracker: /tmp/pip-build-tracker-habe29zp 2023-09-18T15:44:32,699 Entered build tracker: /tmp/pip-build-tracker-habe29zp 2023-09-18T15:44:32,700 Created temporary directory: /tmp/pip-wheel-ies9sx1z 2023-09-18T15:44:32,703 Created temporary directory: /tmp/pip-ephem-wheel-cache-z73g5ml2 2023-09-18T15:44:32,724 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-18T15:44:32,728 2 location(s) to search for versions of pywfa: 2023-09-18T15:44:32,728 * https://pypi.org/simple/pywfa/ 2023-09-18T15:44:32,728 * https://www.piwheels.org/simple/pywfa/ 2023-09-18T15:44:32,728 Fetching project page and analyzing links: https://pypi.org/simple/pywfa/ 2023-09-18T15:44:32,729 Getting page https://pypi.org/simple/pywfa/ 2023-09-18T15:44:32,731 Found index url https://pypi.org/simple/ 2023-09-18T15:44:32,944 Fetched page https://pypi.org/simple/pywfa/ as application/vnd.pypi.simple.v1+json 2023-09-18T15:44:32,947 Found link https://files.pythonhosted.org/packages/a2/27/edbaabe18d863b40b4d0cd143105f8d5ef889e0c58ebab5c7a5f80a41830/pywfa-0.2.5.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.2.5 2023-09-18T15:44:32,948 Found link https://files.pythonhosted.org/packages/0f/01/3aea5a52a6a625fb3ef0c31f516dcdb4e89ba12e21a24bd3678532f67dd2/pywfa-0.2.6.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.2.6 2023-09-18T15:44:32,948 Skipping link: No binaries permitted for pywfa: https://files.pythonhosted.org/packages/69/57/98c7fbf1d497771c732435d02190081514460a8d3518165d5e599ac639dc/pywfa-0.2.7-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7) 2023-09-18T15:44:32,949 Found link https://files.pythonhosted.org/packages/44/b4/f6d5a8e853e18e6eda0358bff42f12f110003ef275b05bb19a4c34d575c7/pywfa-0.2.7.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.2.7 2023-09-18T15:44:32,950 Found link https://files.pythonhosted.org/packages/d5/2d/06abe85c9a4625ff663f04bf79a7236c2ff215b3a474091a98b61611aec1/pywfa-0.3.0.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.3.0 2023-09-18T15:44:32,952 Found link https://files.pythonhosted.org/packages/de/00/b037e1881f50f88d2a3f312a44f03d2430e8c58b3a5b81a005280a54c21a/pywfa-0.4.0.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.4.0 2023-09-18T15:44:32,953 Found link https://files.pythonhosted.org/packages/98/83/0b435c0c681ef8d9418b3d493342041189f3faf470d2dbfa384e7dd234cf/pywfa-0.4.1.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.4.1 2023-09-18T15:44:32,954 Found link https://files.pythonhosted.org/packages/5d/92/366a9f0a0a4b34e2650199861a377eddf7e9f24ecc5298efb81352dc7cee/pywfa-0.4.2.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.4.2 2023-09-18T15:44:32,955 Found link https://files.pythonhosted.org/packages/5a/90/b584ff58075d2949636d8afeee7af9c68169a8b15916d0eaab64e823b2f5/pywfa-0.5.0.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.5.0 2023-09-18T15:44:32,956 Found link https://files.pythonhosted.org/packages/93/40/ec1c77237515eb618ba7407d4ac954b9dd127808a303cd85b0928f8dc12a/pywfa-0.5.1.tar.gz (from https://pypi.org/simple/pywfa/) (requires-python:>=3.7), version: 0.5.1 2023-09-18T15:44:32,957 Fetching project page and analyzing links: https://www.piwheels.org/simple/pywfa/ 2023-09-18T15:44:32,958 Getting page https://www.piwheels.org/simple/pywfa/ 2023-09-18T15:44:32,959 Found index url https://www.piwheels.org/simple/ 2023-09-18T15:44:33,239 Fetched page https://www.piwheels.org/simple/pywfa/ as text/html 2023-09-18T15:44:33,252 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.5.1-py3-none-any.whl#sha256=94f1285ddeb8b9cb6e35b70d89f0bf8f9b34963e8a75414bf783b8c8806c6dba (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-09-18T15:44:33,253 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.5.0-py3-none-any.whl#sha256=c0e5f639a7f88ae98af4d5c07e5b3503b46adbc5b619c671394d2438d48274c9 (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-09-18T15:44:33,254 Skipping link: No binaries permitted for pywfa: https://www.piwheels.org/simple/pywfa/pywfa-0.4.2-py3-none-any.whl#sha256=d9564e7692d318eb5fb46303238ced3000b975f8a2548b171f2f72dc5410e12a (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-09-18T15:44:33,255 Skipping link: No binaries permitted for pywfa: 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https://www.piwheels.org/simple/pywfa/pywfa-0.2.5-cp37-cp37m-linux_armv6l.whl#sha256=b39d17c222708e4ff97f3c3c659a7507d1c9141d6961659a72d6e6a00ad4cf6a (from https://www.piwheels.org/simple/pywfa/) (requires-python:>=3.7) 2023-09-18T15:44:33,274 Skipping link: not a file: https://www.piwheels.org/simple/pywfa/ 2023-09-18T15:44:33,274 Skipping link: not a file: https://pypi.org/simple/pywfa/ 2023-09-18T15:44:33,302 Given no hashes to check 1 links for project 'pywfa': discarding no candidates 2023-09-18T15:44:33,328 Collecting pywfa==0.3.0 2023-09-18T15:44:33,331 Created temporary directory: /tmp/pip-unpack-nz00i75k 2023-09-18T15:44:33,994 Downloading pywfa-0.3.0.tar.gz (3.3 MB) 2023-09-18T15:44:35,132 Added pywfa==0.3.0 from https://files.pythonhosted.org/packages/d5/2d/06abe85c9a4625ff663f04bf79a7236c2ff215b3a474091a98b61611aec1/pywfa-0.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-habe29zp' 2023-09-18T15:44:35,133 Running setup.py (path:/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/setup.py) egg_info for package pywfa 2023-09-18T15:44:35,134 Created temporary directory: /tmp/pip-pip-egg-info-yzh7ejs5 2023-09-18T15:44:35,135 Preparing metadata (setup.py): started 2023-09-18T15:44:35,136 Running command python setup.py egg_info 2023-09-18T15:44:37,626 warning: pywfa/WFA_wrap.pxd:302:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T15:44:37,626 warning: pywfa/WFA_wrap.pxd:303:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T15:44:37,627 warning: pywfa/WFA_wrap.pxd:304:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T15:44:37,628 warning: pywfa/WFA_wrap.pxd:305:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T15:44:37,628 warning: pywfa/WFA_wrap.pxd:306:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T15:44:38,914 Libs ['/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/lib'] 2023-09-18T15:44:38,915 Library dirs ['/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/lib'] 2023-09-18T15:44:38,916 Include dirs ['.', '/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a', '/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib', '/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/lib', '/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/utils', '/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/wavefront', '/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/bindings/cpp', '/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/system', '/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/alignment', '/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa'] 2023-09-18T15:44:38,916 Compiling pywfa/align.pyx because it changed. 2023-09-18T15:44:38,917 [1/1] Cythonizing pywfa/align.pyx 2023-09-18T15:44:39,189 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-18T15:44:39,189 !! 2023-09-18T15:44:39,190 ******************************************************************************** 2023-09-18T15:44:39,191 Requirements should be satisfied by a PEP 517 installer. 2023-09-18T15:44:39,191 If you are using pip, you can try `pip install --use-pep517`. 2023-09-18T15:44:39,191 ******************************************************************************** 2023-09-18T15:44:39,192 !! 2023-09-18T15:44:39,193 dist.fetch_build_eggs(dist.setup_requires) 2023-09-18T15:44:39,369 running egg_info 2023-09-18T15:44:39,370 creating /tmp/pip-pip-egg-info-yzh7ejs5/pywfa.egg-info 2023-09-18T15:44:39,394 writing /tmp/pip-pip-egg-info-yzh7ejs5/pywfa.egg-info/PKG-INFO 2023-09-18T15:44:39,397 writing dependency_links to /tmp/pip-pip-egg-info-yzh7ejs5/pywfa.egg-info/dependency_links.txt 2023-09-18T15:44:39,399 writing requirements to /tmp/pip-pip-egg-info-yzh7ejs5/pywfa.egg-info/requires.txt 2023-09-18T15:44:39,400 writing top-level names to /tmp/pip-pip-egg-info-yzh7ejs5/pywfa.egg-info/top_level.txt 2023-09-18T15:44:39,401 writing manifest file '/tmp/pip-pip-egg-info-yzh7ejs5/pywfa.egg-info/SOURCES.txt' 2023-09-18T15:44:39,479 reading manifest file '/tmp/pip-pip-egg-info-yzh7ejs5/pywfa.egg-info/SOURCES.txt' 2023-09-18T15:44:39,481 reading manifest template 'MANIFEST.in' 2023-09-18T15:44:39,517 warning: no files found matching 'WFA2_lib' under directory 'pywfa' 2023-09-18T15:44:39,524 adding license file 'LICENSE.md' 2023-09-18T15:44:39,530 writing manifest file '/tmp/pip-pip-egg-info-yzh7ejs5/pywfa.egg-info/SOURCES.txt' 2023-09-18T15:44:39,838 Preparing metadata (setup.py): finished with status 'done' 2023-09-18T15:44:39,842 Source in /tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a has version 0.3.0, which satisfies requirement pywfa==0.3.0 from https://files.pythonhosted.org/packages/d5/2d/06abe85c9a4625ff663f04bf79a7236c2ff215b3a474091a98b61611aec1/pywfa-0.3.0.tar.gz 2023-09-18T15:44:39,843 Removed pywfa==0.3.0 from https://files.pythonhosted.org/packages/d5/2d/06abe85c9a4625ff663f04bf79a7236c2ff215b3a474091a98b61611aec1/pywfa-0.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-habe29zp' 2023-09-18T15:44:39,848 Created temporary directory: /tmp/pip-unpack-n901s6bz 2023-09-18T15:44:39,849 Created temporary directory: /tmp/pip-unpack-15_qfnyn 2023-09-18T15:44:39,853 Building wheels for collected packages: pywfa 2023-09-18T15:44:39,857 Created temporary directory: /tmp/pip-wheel-c1gnk1dp 2023-09-18T15:44:39,857 Building wheel for pywfa (setup.py): started 2023-09-18T15:44:39,858 Destination directory: /tmp/pip-wheel-c1gnk1dp 2023-09-18T15:44:39,859 Running command python setup.py bdist_wheel 2023-09-18T15:44:40,638 Libs ['/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/lib'] 2023-09-18T15:44:40,639 Library dirs ['/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/lib'] 2023-09-18T15:44:40,639 Include dirs ['.', '/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a', '/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib', '/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/lib', '/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/utils', '/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/wavefront', '/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/bindings/cpp', '/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/system', '/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/alignment', '/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa'] 2023-09-18T15:44:41,424 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-18T15:44:41,425 !! 2023-09-18T15:44:41,426 ******************************************************************************** 2023-09-18T15:44:41,426 Requirements should be satisfied by a PEP 517 installer. 2023-09-18T15:44:41,427 If you are using pip, you can try `pip install --use-pep517`. 2023-09-18T15:44:41,427 ******************************************************************************** 2023-09-18T15:44:41,428 !! 2023-09-18T15:44:41,428 dist.fetch_build_eggs(dist.setup_requires) 2023-09-18T15:44:41,595 running bdist_wheel 2023-09-18T15:44:41,664 running build 2023-09-18T15:44:41,664 running build_py 2023-09-18T15:44:41,690 creating build 2023-09-18T15:44:41,691 creating build/lib.linux-armv7l-cpython-311 2023-09-18T15:44:41,691 creating build/lib.linux-armv7l-cpython-311/pywfa 2023-09-18T15:44:41,692 copying pywfa/__init__.py -> build/lib.linux-armv7l-cpython-311/pywfa 2023-09-18T15:44:41,694 creating build/lib.linux-armv7l-cpython-311/pywfa/tests 2023-09-18T15:44:41,695 copying pywfa/tests/test.py -> build/lib.linux-armv7l-cpython-311/pywfa/tests 2023-09-18T15:44:41,697 copying pywfa/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/pywfa/tests 2023-09-18T15:44:41,698 running egg_info 2023-09-18T15:44:41,745 writing pywfa.egg-info/PKG-INFO 2023-09-18T15:44:41,747 writing dependency_links to pywfa.egg-info/dependency_links.txt 2023-09-18T15:44:41,749 writing requirements to pywfa.egg-info/requires.txt 2023-09-18T15:44:41,750 writing top-level names to pywfa.egg-info/top_level.txt 2023-09-18T15:44:41,776 reading manifest file 'pywfa.egg-info/SOURCES.txt' 2023-09-18T15:44:41,781 reading manifest template 'MANIFEST.in' 2023-09-18T15:44:41,811 warning: no files found matching 'WFA2_lib' under directory 'pywfa' 2023-09-18T15:44:41,818 adding license file 'LICENSE.md' 2023-09-18T15:44:41,826 writing manifest file 'pywfa.egg-info/SOURCES.txt' 2023-09-18T15:44:41,829 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pywfa.WFA2_lib.alignment' is absent from the `packages` configuration. 2023-09-18T15:44:41,829 !! 2023-09-18T15:44:41,831 ******************************************************************************** 2023-09-18T15:44:41,831 ############################ 2023-09-18T15:44:41,832 # Package would be ignored # 2023-09-18T15:44:41,833 ############################ 2023-09-18T15:44:41,833 Python recognizes 'pywfa.WFA2_lib.alignment' as an importable package[^1], 2023-09-18T15:44:41,834 but it is absent from setuptools' `packages` configuration. 2023-09-18T15:44:41,835 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-18T15:44:41,835 package, please make sure that 'pywfa.WFA2_lib.alignment' is explicitly added 2023-09-18T15:44:41,836 to the `packages` configuration field. 2023-09-18T15:44:41,837 Alternatively, you can also rely on setuptools' discovery methods 2023-09-18T15:44:41,838 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-18T15:44:41,838 instead of `find_packages(...)`/`find:`). 2023-09-18T15:44:41,839 You can read more about "package discovery" on setuptools documentation page: 2023-09-18T15:44:41,840 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-18T15:44:41,841 If you don't want 'pywfa.WFA2_lib.alignment' to be distributed and are 2023-09-18T15:44:41,842 already explicitly excluding 'pywfa.WFA2_lib.alignment' via 2023-09-18T15:44:41,843 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-18T15:44:41,843 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-18T15:44:41,844 combination with a more fine grained `package-data` configuration. 2023-09-18T15:44:41,845 You can read more about "package data files" on setuptools documentation page: 2023-09-18T15:44:41,846 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-18T15:44:41,847 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-18T15:44:41,847 even if it does not contain any `.py` files. 2023-09-18T15:44:41,847 On the other hand, currently there is no concept of package data 2023-09-18T15:44:41,848 directory, all directories are treated like packages. 2023-09-18T15:44:41,848 ******************************************************************************** 2023-09-18T15:44:41,849 !! 2023-09-18T15:44:41,849 check.warn(importable) 2023-09-18T15:44:41,850 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pywfa.WFA2_lib.build' is absent from the `packages` configuration. 2023-09-18T15:44:41,850 !! 2023-09-18T15:44:41,851 ******************************************************************************** 2023-09-18T15:44:41,852 ############################ 2023-09-18T15:44:41,852 # Package would be ignored # 2023-09-18T15:44:41,853 ############################ 2023-09-18T15:44:41,853 Python recognizes 'pywfa.WFA2_lib.build' as an importable package[^1], 2023-09-18T15:44:41,853 but it is absent from setuptools' `packages` configuration. 2023-09-18T15:44:41,855 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-18T15:44:41,856 package, please make sure that 'pywfa.WFA2_lib.build' is explicitly added 2023-09-18T15:44:41,856 to the `packages` configuration field. 2023-09-18T15:44:41,857 Alternatively, you can also rely on setuptools' discovery methods 2023-09-18T15:44:41,858 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-18T15:44:41,858 instead of `find_packages(...)`/`find:`). 2023-09-18T15:44:41,859 You can read more about "package discovery" on setuptools documentation page: 2023-09-18T15:44:41,860 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-18T15:44:41,861 If you don't want 'pywfa.WFA2_lib.build' to be distributed and are 2023-09-18T15:44:41,862 already explicitly excluding 'pywfa.WFA2_lib.build' via 2023-09-18T15:44:41,863 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-18T15:44:41,863 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-18T15:44:41,864 combination with a more fine grained `package-data` configuration. 2023-09-18T15:44:41,867 You can read more about "package data files" on setuptools documentation page: 2023-09-18T15:44:41,876 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-18T15:44:41,878 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-18T15:44:41,879 even if it does not contain any `.py` files. 2023-09-18T15:44:41,880 On the other hand, currently there is no concept of package data 2023-09-18T15:44:41,881 directory, all directories are treated like packages. 2023-09-18T15:44:41,882 ******************************************************************************** 2023-09-18T15:44:41,888 !! 2023-09-18T15:44:41,893 check.warn(importable) 2023-09-18T15:44:41,895 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pywfa.WFA2_lib.examples' is absent from the `packages` configuration. 2023-09-18T15:44:41,896 !! 2023-09-18T15:44:41,897 ******************************************************************************** 2023-09-18T15:44:41,897 ############################ 2023-09-18T15:44:41,898 # Package would be ignored # 2023-09-18T15:44:41,899 ############################ 2023-09-18T15:44:41,900 Python recognizes 'pywfa.WFA2_lib.examples' as an importable package[^1], 2023-09-18T15:44:41,900 but it is absent from setuptools' `packages` configuration. 2023-09-18T15:44:41,902 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-18T15:44:41,902 package, please make sure that 'pywfa.WFA2_lib.examples' is explicitly added 2023-09-18T15:44:41,903 to the `packages` configuration field. 2023-09-18T15:44:41,903 Alternatively, you can also rely on setuptools' discovery methods 2023-09-18T15:44:41,904 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-18T15:44:41,905 instead of `find_packages(...)`/`find:`). 2023-09-18T15:44:41,905 You can read more about "package discovery" on setuptools documentation page: 2023-09-18T15:44:41,907 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-18T15:44:41,908 If you don't want 'pywfa.WFA2_lib.examples' to be distributed and are 2023-09-18T15:44:41,908 already explicitly excluding 'pywfa.WFA2_lib.examples' via 2023-09-18T15:44:41,909 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-18T15:44:41,909 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-18T15:44:41,910 combination with a more fine grained `package-data` configuration. 2023-09-18T15:44:41,911 You can read more about "package data files" on setuptools documentation page: 2023-09-18T15:44:41,912 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-18T15:44:41,913 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-18T15:44:41,914 even if it does not contain any `.py` files. 2023-09-18T15:44:41,914 On the other hand, currently there is no concept of package data 2023-09-18T15:44:41,915 directory, all directories are treated like packages. 2023-09-18T15:44:41,915 ******************************************************************************** 2023-09-18T15:44:41,916 !! 2023-09-18T15:44:41,917 check.warn(importable) 2023-09-18T15:44:41,917 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pywfa.WFA2_lib.img' is absent from the `packages` configuration. 2023-09-18T15:44:41,918 !! 2023-09-18T15:44:41,919 ******************************************************************************** 2023-09-18T15:44:41,919 ############################ 2023-09-18T15:44:41,920 # Package would be ignored # 2023-09-18T15:44:41,920 ############################ 2023-09-18T15:44:41,921 Python recognizes 'pywfa.WFA2_lib.img' as an importable package[^1], 2023-09-18T15:44:41,921 but it is absent from setuptools' `packages` configuration. 2023-09-18T15:44:41,922 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-18T15:44:41,923 package, please make sure that 'pywfa.WFA2_lib.img' is explicitly added 2023-09-18T15:44:41,923 to the `packages` configuration field. 2023-09-18T15:44:41,924 Alternatively, you can also rely on setuptools' discovery methods 2023-09-18T15:44:41,925 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-18T15:44:41,925 instead of `find_packages(...)`/`find:`). 2023-09-18T15:44:41,926 You can read more about "package discovery" on setuptools documentation page: 2023-09-18T15:44:41,927 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-18T15:44:41,928 If you don't want 'pywfa.WFA2_lib.img' to be distributed and are 2023-09-18T15:44:41,929 already explicitly excluding 'pywfa.WFA2_lib.img' via 2023-09-18T15:44:41,929 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-18T15:44:41,929 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-18T15:44:41,930 combination with a more fine grained `package-data` configuration. 2023-09-18T15:44:41,930 You can read more about "package data files" on setuptools documentation page: 2023-09-18T15:44:41,931 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-18T15:44:41,932 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-18T15:44:41,933 even if it does not contain any `.py` files. 2023-09-18T15:44:41,933 On the other hand, currently there is no concept of package data 2023-09-18T15:44:41,934 directory, all directories are treated like packages. 2023-09-18T15:44:41,934 ******************************************************************************** 2023-09-18T15:44:41,935 !! 2023-09-18T15:44:41,936 check.warn(importable) 2023-09-18T15:44:41,936 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pywfa.WFA2_lib.lib' is absent from the `packages` configuration. 2023-09-18T15:44:41,936 !! 2023-09-18T15:44:41,937 ******************************************************************************** 2023-09-18T15:44:41,938 ############################ 2023-09-18T15:44:41,938 # Package would be ignored # 2023-09-18T15:44:41,939 ############################ 2023-09-18T15:44:41,939 Python recognizes 'pywfa.WFA2_lib.lib' as an importable package[^1], 2023-09-18T15:44:41,940 but it is absent from setuptools' `packages` configuration. 2023-09-18T15:44:41,941 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-18T15:44:41,941 package, please make sure that 'pywfa.WFA2_lib.lib' is explicitly added 2023-09-18T15:44:41,942 to the `packages` configuration field. 2023-09-18T15:44:41,943 Alternatively, you can also rely on setuptools' discovery methods 2023-09-18T15:44:41,943 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-18T15:44:41,943 instead of `find_packages(...)`/`find:`). 2023-09-18T15:44:41,945 You can read more about "package discovery" on setuptools documentation page: 2023-09-18T15:44:41,946 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-18T15:44:41,947 If you don't want 'pywfa.WFA2_lib.lib' to be distributed and are 2023-09-18T15:44:41,947 already explicitly excluding 'pywfa.WFA2_lib.lib' via 2023-09-18T15:44:41,948 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-18T15:44:41,948 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-18T15:44:41,949 combination with a more fine grained `package-data` configuration. 2023-09-18T15:44:41,950 You can read more about "package data files" on setuptools documentation page: 2023-09-18T15:44:41,951 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-18T15:44:41,952 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-18T15:44:41,953 even if it does not contain any `.py` files. 2023-09-18T15:44:41,954 On the other hand, currently there is no concept of package data 2023-09-18T15:44:41,954 directory, all directories are treated like packages. 2023-09-18T15:44:41,955 ******************************************************************************** 2023-09-18T15:44:41,956 !! 2023-09-18T15:44:41,956 check.warn(importable) 2023-09-18T15:44:41,957 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pywfa.WFA2_lib.scripts' is absent from the `packages` configuration. 2023-09-18T15:44:41,958 !! 2023-09-18T15:44:41,958 ******************************************************************************** 2023-09-18T15:44:41,959 ############################ 2023-09-18T15:44:41,959 # Package would be ignored # 2023-09-18T15:44:41,960 ############################ 2023-09-18T15:44:41,960 Python recognizes 'pywfa.WFA2_lib.scripts' as an importable package[^1], 2023-09-18T15:44:41,960 but it is absent from setuptools' `packages` configuration. 2023-09-18T15:44:41,961 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-18T15:44:41,962 package, please make sure that 'pywfa.WFA2_lib.scripts' is explicitly added 2023-09-18T15:44:41,962 to the `packages` configuration field. 2023-09-18T15:44:41,963 Alternatively, you can also rely on setuptools' discovery methods 2023-09-18T15:44:41,964 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-18T15:44:41,964 instead of `find_packages(...)`/`find:`). 2023-09-18T15:44:41,965 You can read more about "package discovery" on setuptools documentation page: 2023-09-18T15:44:41,966 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-18T15:44:41,967 If you don't want 'pywfa.WFA2_lib.scripts' to be distributed and are 2023-09-18T15:44:41,968 already explicitly excluding 'pywfa.WFA2_lib.scripts' via 2023-09-18T15:44:41,968 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-18T15:44:41,969 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-18T15:44:41,969 combination with a more fine grained `package-data` configuration. 2023-09-18T15:44:41,970 You can read more about "package data files" on setuptools documentation page: 2023-09-18T15:44:41,971 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-18T15:44:41,973 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-18T15:44:41,973 even if it does not contain any `.py` files. 2023-09-18T15:44:41,974 On the other hand, currently there is no concept of package data 2023-09-18T15:44:41,975 directory, all directories are treated like packages. 2023-09-18T15:44:41,975 ******************************************************************************** 2023-09-18T15:44:41,976 !! 2023-09-18T15:44:41,977 check.warn(importable) 2023-09-18T15:44:41,977 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pywfa.WFA2_lib.system' is absent from the `packages` configuration. 2023-09-18T15:44:41,978 !! 2023-09-18T15:44:41,979 ******************************************************************************** 2023-09-18T15:44:41,979 ############################ 2023-09-18T15:44:41,980 # Package would be ignored # 2023-09-18T15:44:41,980 ############################ 2023-09-18T15:44:41,981 Python recognizes 'pywfa.WFA2_lib.system' as an importable package[^1], 2023-09-18T15:44:41,981 but it is absent from setuptools' `packages` configuration. 2023-09-18T15:44:41,983 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-18T15:44:41,983 package, please make sure that 'pywfa.WFA2_lib.system' is explicitly added 2023-09-18T15:44:41,983 to the `packages` configuration field. 2023-09-18T15:44:41,985 Alternatively, you can also rely on setuptools' discovery methods 2023-09-18T15:44:41,985 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-18T15:44:41,986 instead of `find_packages(...)`/`find:`). 2023-09-18T15:44:41,987 You can read more about "package discovery" on setuptools documentation page: 2023-09-18T15:44:41,988 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-18T15:44:41,989 If you don't want 'pywfa.WFA2_lib.system' to be distributed and are 2023-09-18T15:44:41,989 already explicitly excluding 'pywfa.WFA2_lib.system' via 2023-09-18T15:44:41,990 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-18T15:44:41,990 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-18T15:44:41,990 combination with a more fine grained `package-data` configuration. 2023-09-18T15:44:41,991 You can read more about "package data files" on setuptools documentation page: 2023-09-18T15:44:41,992 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-18T15:44:41,994 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-18T15:44:41,994 even if it does not contain any `.py` files. 2023-09-18T15:44:41,995 On the other hand, currently there is no concept of package data 2023-09-18T15:44:41,995 directory, all directories are treated like packages. 2023-09-18T15:44:41,996 ******************************************************************************** 2023-09-18T15:44:41,997 !! 2023-09-18T15:44:41,997 check.warn(importable) 2023-09-18T15:44:41,998 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pywfa.WFA2_lib.tools' is absent from the `packages` configuration. 2023-09-18T15:44:41,999 !! 2023-09-18T15:44:42,000 ******************************************************************************** 2023-09-18T15:44:42,000 ############################ 2023-09-18T15:44:42,001 # Package would be ignored # 2023-09-18T15:44:42,001 ############################ 2023-09-18T15:44:42,002 Python recognizes 'pywfa.WFA2_lib.tools' as an importable package[^1], 2023-09-18T15:44:42,002 but it is absent from setuptools' `packages` configuration. 2023-09-18T15:44:42,003 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-18T15:44:42,004 package, please make sure that 'pywfa.WFA2_lib.tools' is explicitly added 2023-09-18T15:44:42,004 to the `packages` configuration field. 2023-09-18T15:44:42,005 Alternatively, you can also rely on setuptools' discovery methods 2023-09-18T15:44:42,006 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-18T15:44:42,006 instead of `find_packages(...)`/`find:`). 2023-09-18T15:44:42,007 You can read more about "package discovery" on setuptools documentation page: 2023-09-18T15:44:42,009 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-18T15:44:42,010 If you don't want 'pywfa.WFA2_lib.tools' to be distributed and are 2023-09-18T15:44:42,010 already explicitly excluding 'pywfa.WFA2_lib.tools' via 2023-09-18T15:44:42,011 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-18T15:44:42,011 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-18T15:44:42,012 combination with a more fine grained `package-data` configuration. 2023-09-18T15:44:42,013 You can read more about "package data files" on setuptools documentation page: 2023-09-18T15:44:42,014 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-18T15:44:42,015 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-18T15:44:42,016 even if it does not contain any `.py` files. 2023-09-18T15:44:42,017 On the other hand, currently there is no concept of package data 2023-09-18T15:44:42,017 directory, all directories are treated like packages. 2023-09-18T15:44:42,018 ******************************************************************************** 2023-09-18T15:44:42,019 !! 2023-09-18T15:44:42,019 check.warn(importable) 2023-09-18T15:44:42,020 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pywfa.WFA2_lib.utils' is absent from the `packages` configuration. 2023-09-18T15:44:42,020 !! 2023-09-18T15:44:42,021 ******************************************************************************** 2023-09-18T15:44:42,021 ############################ 2023-09-18T15:44:42,022 # Package would be ignored # 2023-09-18T15:44:42,022 ############################ 2023-09-18T15:44:42,023 Python recognizes 'pywfa.WFA2_lib.utils' as an importable package[^1], 2023-09-18T15:44:42,023 but it is absent from setuptools' `packages` configuration. 2023-09-18T15:44:42,024 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-18T15:44:42,025 package, please make sure that 'pywfa.WFA2_lib.utils' is explicitly added 2023-09-18T15:44:42,025 to the `packages` configuration field. 2023-09-18T15:44:42,026 Alternatively, you can also rely on setuptools' discovery methods 2023-09-18T15:44:42,027 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-18T15:44:42,027 instead of `find_packages(...)`/`find:`). 2023-09-18T15:44:42,028 You can read more about "package discovery" on setuptools documentation page: 2023-09-18T15:44:42,029 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-18T15:44:42,030 If you don't want 'pywfa.WFA2_lib.utils' to be distributed and are 2023-09-18T15:44:42,030 already explicitly excluding 'pywfa.WFA2_lib.utils' via 2023-09-18T15:44:42,031 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-18T15:44:42,031 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-18T15:44:42,032 combination with a more fine grained `package-data` configuration. 2023-09-18T15:44:42,033 You can read more about "package data files" on setuptools documentation page: 2023-09-18T15:44:42,034 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-18T15:44:42,035 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-18T15:44:42,036 even if it does not contain any `.py` files. 2023-09-18T15:44:42,036 On the other hand, currently there is no concept of package data 2023-09-18T15:44:42,037 directory, all directories are treated like packages. 2023-09-18T15:44:42,037 ******************************************************************************** 2023-09-18T15:44:42,038 !! 2023-09-18T15:44:42,039 check.warn(importable) 2023-09-18T15:44:42,040 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pywfa.WFA2_lib.wavefront' is absent from the `packages` configuration. 2023-09-18T15:44:42,040 !! 2023-09-18T15:44:42,041 ******************************************************************************** 2023-09-18T15:44:42,042 ############################ 2023-09-18T15:44:42,042 # Package would be ignored # 2023-09-18T15:44:42,043 ############################ 2023-09-18T15:44:42,043 Python recognizes 'pywfa.WFA2_lib.wavefront' as an importable package[^1], 2023-09-18T15:44:42,043 but it is absent from setuptools' `packages` configuration. 2023-09-18T15:44:42,045 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-18T15:44:42,045 package, please make sure that 'pywfa.WFA2_lib.wavefront' is explicitly added 2023-09-18T15:44:42,046 to the `packages` configuration field. 2023-09-18T15:44:42,047 Alternatively, you can also rely on setuptools' discovery methods 2023-09-18T15:44:42,047 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-18T15:44:42,048 instead of `find_packages(...)`/`find:`). 2023-09-18T15:44:42,049 You can read more about "package discovery" on setuptools documentation page: 2023-09-18T15:44:42,050 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-18T15:44:42,050 If you don't want 'pywfa.WFA2_lib.wavefront' to be distributed and are 2023-09-18T15:44:42,051 already explicitly excluding 'pywfa.WFA2_lib.wavefront' via 2023-09-18T15:44:42,051 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-18T15:44:42,052 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-18T15:44:42,052 combination with a more fine grained `package-data` configuration. 2023-09-18T15:44:42,053 You can read more about "package data files" on setuptools documentation page: 2023-09-18T15:44:42,054 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-18T15:44:42,055 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-18T15:44:42,055 even if it does not contain any `.py` files. 2023-09-18T15:44:42,056 On the other hand, currently there is no concept of package data 2023-09-18T15:44:42,056 directory, all directories are treated like packages. 2023-09-18T15:44:42,057 ******************************************************************************** 2023-09-18T15:44:42,057 !! 2023-09-18T15:44:42,058 check.warn(importable) 2023-09-18T15:44:42,058 copying pywfa/.DS_Store -> build/lib.linux-armv7l-cpython-311/pywfa 2023-09-18T15:44:42,059 copying pywfa/WFA_wrap.c -> build/lib.linux-armv7l-cpython-311/pywfa 2023-09-18T15:44:42,059 copying pywfa/WFA_wrap.pxd -> build/lib.linux-armv7l-cpython-311/pywfa 2023-09-18T15:44:42,060 copying pywfa/align.c -> build/lib.linux-armv7l-cpython-311/pywfa 2023-09-18T15:44:42,060 copying pywfa/align.cpython-39-darwin.so -> build/lib.linux-armv7l-cpython-311/pywfa 2023-09-18T15:44:42,061 copying pywfa/align.pxd -> build/lib.linux-armv7l-cpython-311/pywfa 2023-09-18T15:44:42,061 copying pywfa/align.pyx -> build/lib.linux-armv7l-cpython-311/pywfa 2023-09-18T15:44:42,062 creating build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib 2023-09-18T15:44:42,062 creating build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment 2023-09-18T15:44:42,063 copying pywfa/WFA2_lib/alignment/Makefile -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment 2023-09-18T15:44:42,063 copying pywfa/WFA2_lib/alignment/affine2p_penalties.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment 2023-09-18T15:44:42,064 copying pywfa/WFA2_lib/alignment/affine2p_penalties.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment 2023-09-18T15:44:42,064 copying pywfa/WFA2_lib/alignment/affine_penalties.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment 2023-09-18T15:44:42,065 copying pywfa/WFA2_lib/alignment/affine_penalties.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment 2023-09-18T15:44:42,065 copying pywfa/WFA2_lib/alignment/cigar.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment 2023-09-18T15:44:42,066 copying pywfa/WFA2_lib/alignment/cigar.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment 2023-09-18T15:44:42,066 copying pywfa/WFA2_lib/alignment/linear_penalties.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment 2023-09-18T15:44:42,067 copying pywfa/WFA2_lib/alignment/score_matrix.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment 2023-09-18T15:44:42,067 copying pywfa/WFA2_lib/alignment/score_matrix.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment 2023-09-18T15:44:42,068 creating build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,068 copying pywfa/WFA2_lib/build/affine2p_penalties.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,069 copying pywfa/WFA2_lib/build/affine_penalties.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,069 copying pywfa/WFA2_lib/build/bitmap.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,070 copying pywfa/WFA2_lib/build/cigar.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,070 copying pywfa/WFA2_lib/build/commons.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,071 copying pywfa/WFA2_lib/build/dna_text.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,071 copying pywfa/WFA2_lib/build/heatmap.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,071 copying pywfa/WFA2_lib/build/mm_allocator.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,072 copying pywfa/WFA2_lib/build/mm_stack.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,072 copying pywfa/WFA2_lib/build/profiler_counter.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,073 copying pywfa/WFA2_lib/build/profiler_timer.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,073 copying pywfa/WFA2_lib/build/score_matrix.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,074 copying pywfa/WFA2_lib/build/sequence_buffer.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,074 copying pywfa/WFA2_lib/build/string_padded.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,075 copying pywfa/WFA2_lib/build/vector.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,075 copying pywfa/WFA2_lib/build/wavefront.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,076 copying pywfa/WFA2_lib/build/wavefront_align.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,076 copying pywfa/WFA2_lib/build/wavefront_aligner.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,077 copying pywfa/WFA2_lib/build/wavefront_attributes.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,077 copying pywfa/WFA2_lib/build/wavefront_backtrace.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,078 copying pywfa/WFA2_lib/build/wavefront_backtrace_buffer.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,079 copying pywfa/WFA2_lib/build/wavefront_backtrace_offload.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,079 copying pywfa/WFA2_lib/build/wavefront_bialign.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,080 copying pywfa/WFA2_lib/build/wavefront_components.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,081 copying pywfa/WFA2_lib/build/wavefront_compute.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,081 copying pywfa/WFA2_lib/build/wavefront_compute_affine.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,082 copying pywfa/WFA2_lib/build/wavefront_compute_affine2p.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,082 copying pywfa/WFA2_lib/build/wavefront_compute_edit.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,083 copying pywfa/WFA2_lib/build/wavefront_compute_linear.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,083 copying pywfa/WFA2_lib/build/wavefront_debug.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,084 copying pywfa/WFA2_lib/build/wavefront_display.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,085 copying pywfa/WFA2_lib/build/wavefront_extend.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,085 copying pywfa/WFA2_lib/build/wavefront_heuristic.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,086 copying pywfa/WFA2_lib/build/wavefront_pcigar.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,086 copying pywfa/WFA2_lib/build/wavefront_penalties.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,087 copying pywfa/WFA2_lib/build/wavefront_plot.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,087 copying pywfa/WFA2_lib/build/wavefront_slab.o -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build 2023-09-18T15:44:42,088 creating build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/examples 2023-09-18T15:44:42,088 copying pywfa/WFA2_lib/examples/Makefile -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/examples 2023-09-18T15:44:42,089 copying pywfa/WFA2_lib/examples/README.md -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/examples 2023-09-18T15:44:42,089 copying pywfa/WFA2_lib/examples/wfa_adapt.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/examples 2023-09-18T15:44:42,090 copying pywfa/WFA2_lib/examples/wfa_basic.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/examples 2023-09-18T15:44:42,091 copying pywfa/WFA2_lib/examples/wfa_bindings.cpp -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/examples 2023-09-18T15:44:42,091 copying pywfa/WFA2_lib/examples/wfa_lambda.cpp -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/examples 2023-09-18T15:44:42,092 copying pywfa/WFA2_lib/examples/wfa_repeated.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/examples 2023-09-18T15:44:42,092 creating build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/img 2023-09-18T15:44:42,093 copying pywfa/WFA2_lib/img/heuristics.aband.10.10.png -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/img 2023-09-18T15:44:42,094 copying pywfa/WFA2_lib/img/heuristics.aband.50.50.png -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/img 2023-09-18T15:44:42,097 copying pywfa/WFA2_lib/img/heuristics.band.10.10.png -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/img 2023-09-18T15:44:42,105 copying pywfa/WFA2_lib/img/heuristics.band.10.150.png -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/img 2023-09-18T15:44:42,114 copying pywfa/WFA2_lib/img/heuristics.none.png -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/img 2023-09-18T15:44:42,124 copying pywfa/WFA2_lib/img/heuristics.wfadap.10.50.1.png -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/img 2023-09-18T15:44:42,132 copying pywfa/WFA2_lib/img/heuristics.wfadap.10.50.10.png -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/img 2023-09-18T15:44:42,141 copying pywfa/WFA2_lib/img/wfa.vs.swg.png -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/img 2023-09-18T15:44:42,164 creating build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/lib 2023-09-18T15:44:42,165 copying pywfa/WFA2_lib/lib/libwfa.a -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/lib 2023-09-18T15:44:42,187 creating build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/scripts 2023-09-18T15:44:42,188 copying pywfa/WFA2_lib/scripts/fasta2seq.sh -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/scripts 2023-09-18T15:44:42,190 copying pywfa/WFA2_lib/scripts/seq2fasta.sh -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/scripts 2023-09-18T15:44:42,192 copying pywfa/WFA2_lib/scripts/wfa.alg.cmp.py -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/scripts 2023-09-18T15:44:42,194 copying pywfa/WFA2_lib/scripts/wfa.alg.cmp.score.sh -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/scripts 2023-09-18T15:44:42,196 copying pywfa/WFA2_lib/scripts/wfa.alg.rescore.py -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/scripts 2023-09-18T15:44:42,199 copying pywfa/WFA2_lib/scripts/wfa2png.py -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/scripts 2023-09-18T15:44:42,201 creating build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/system 2023-09-18T15:44:42,202 copying pywfa/WFA2_lib/system/Makefile -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/system 2023-09-18T15:44:42,204 copying pywfa/WFA2_lib/system/mm_allocator.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/system 2023-09-18T15:44:42,207 copying pywfa/WFA2_lib/system/mm_allocator.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/system 2023-09-18T15:44:42,209 copying pywfa/WFA2_lib/system/mm_stack.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/system 2023-09-18T15:44:42,212 copying pywfa/WFA2_lib/system/mm_stack.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/system 2023-09-18T15:44:42,214 copying pywfa/WFA2_lib/system/profiler_counter.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/system 2023-09-18T15:44:42,217 copying pywfa/WFA2_lib/system/profiler_counter.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/system 2023-09-18T15:44:42,219 copying pywfa/WFA2_lib/system/profiler_timer.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/system 2023-09-18T15:44:42,221 copying pywfa/WFA2_lib/system/profiler_timer.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/system 2023-09-18T15:44:42,223 creating build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/tools 2023-09-18T15:44:42,224 copying pywfa/WFA2_lib/tools/.DS_Store -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/tools 2023-09-18T15:44:42,226 copying pywfa/WFA2_lib/tools/README.md -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/tools 2023-09-18T15:44:42,229 creating build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils 2023-09-18T15:44:42,230 copying pywfa/WFA2_lib/utils/Makefile -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils 2023-09-18T15:44:42,232 copying pywfa/WFA2_lib/utils/bitmap.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils 2023-09-18T15:44:42,234 copying pywfa/WFA2_lib/utils/bitmap.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils 2023-09-18T15:44:42,236 copying pywfa/WFA2_lib/utils/commons.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils 2023-09-18T15:44:42,238 copying pywfa/WFA2_lib/utils/commons.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils 2023-09-18T15:44:42,240 copying pywfa/WFA2_lib/utils/dna_text.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils 2023-09-18T15:44:42,242 copying pywfa/WFA2_lib/utils/dna_text.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils 2023-09-18T15:44:42,244 copying pywfa/WFA2_lib/utils/heatmap.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils 2023-09-18T15:44:42,246 copying pywfa/WFA2_lib/utils/heatmap.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils 2023-09-18T15:44:42,248 copying pywfa/WFA2_lib/utils/sequence_buffer.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils 2023-09-18T15:44:42,251 copying pywfa/WFA2_lib/utils/sequence_buffer.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils 2023-09-18T15:44:42,253 copying pywfa/WFA2_lib/utils/string_padded.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils 2023-09-18T15:44:42,255 copying pywfa/WFA2_lib/utils/string_padded.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils 2023-09-18T15:44:42,257 copying pywfa/WFA2_lib/utils/vector.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils 2023-09-18T15:44:42,259 copying pywfa/WFA2_lib/utils/vector.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils 2023-09-18T15:44:42,261 creating build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,262 copying pywfa/WFA2_lib/wavefront/Makefile -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,264 copying pywfa/WFA2_lib/wavefront/wavefront.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,267 copying pywfa/WFA2_lib/wavefront/wavefront.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,269 copying pywfa/WFA2_lib/wavefront/wavefront_align.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,271 copying pywfa/WFA2_lib/wavefront/wavefront_align.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,273 copying pywfa/WFA2_lib/wavefront/wavefront_aligner.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,276 copying pywfa/WFA2_lib/wavefront/wavefront_aligner.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,278 copying pywfa/WFA2_lib/wavefront/wavefront_attributes.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,280 copying pywfa/WFA2_lib/wavefront/wavefront_attributes.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,282 copying pywfa/WFA2_lib/wavefront/wavefront_backtrace.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,285 copying pywfa/WFA2_lib/wavefront/wavefront_backtrace.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,287 copying pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,289 copying pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,291 copying pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,294 copying pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,296 copying pywfa/WFA2_lib/wavefront/wavefront_bialign.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,298 copying pywfa/WFA2_lib/wavefront/wavefront_bialign.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,300 copying pywfa/WFA2_lib/wavefront/wavefront_components.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,303 copying pywfa/WFA2_lib/wavefront/wavefront_components.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,305 copying pywfa/WFA2_lib/wavefront/wavefront_compute.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,308 copying pywfa/WFA2_lib/wavefront/wavefront_compute.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,310 copying pywfa/WFA2_lib/wavefront/wavefront_compute_affine.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,312 copying pywfa/WFA2_lib/wavefront/wavefront_compute_affine.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,314 copying pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,317 copying pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,319 copying pywfa/WFA2_lib/wavefront/wavefront_compute_edit.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,321 copying pywfa/WFA2_lib/wavefront/wavefront_compute_edit.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,323 copying pywfa/WFA2_lib/wavefront/wavefront_compute_linear.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,325 copying pywfa/WFA2_lib/wavefront/wavefront_compute_linear.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,327 copying pywfa/WFA2_lib/wavefront/wavefront_debug.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,330 copying pywfa/WFA2_lib/wavefront/wavefront_debug.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,332 copying pywfa/WFA2_lib/wavefront/wavefront_display.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,334 copying pywfa/WFA2_lib/wavefront/wavefront_display.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,336 copying pywfa/WFA2_lib/wavefront/wavefront_extend.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,338 copying pywfa/WFA2_lib/wavefront/wavefront_extend.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,340 copying pywfa/WFA2_lib/wavefront/wavefront_heuristic.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,343 copying pywfa/WFA2_lib/wavefront/wavefront_heuristic.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,345 copying pywfa/WFA2_lib/wavefront/wavefront_offset.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,347 copying pywfa/WFA2_lib/wavefront/wavefront_pcigar.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,350 copying pywfa/WFA2_lib/wavefront/wavefront_pcigar.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,352 copying pywfa/WFA2_lib/wavefront/wavefront_penalties.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,354 copying pywfa/WFA2_lib/wavefront/wavefront_penalties.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,356 copying pywfa/WFA2_lib/wavefront/wavefront_plot.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,358 copying pywfa/WFA2_lib/wavefront/wavefront_plot.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,360 copying pywfa/WFA2_lib/wavefront/wavefront_slab.c -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,363 copying pywfa/WFA2_lib/wavefront/wavefront_slab.h -> build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront 2023-09-18T15:44:42,365 copying pywfa/tests/long.fa -> build/lib.linux-armv7l-cpython-311/pywfa/tests 2023-09-18T15:44:42,366 copying pywfa/tests/long.reference.fa -> build/lib.linux-armv7l-cpython-311/pywfa/tests 2023-09-18T15:44:42,368 copying pywfa/tests/short.fa -> build/lib.linux-armv7l-cpython-311/pywfa/tests 2023-09-18T15:44:42,370 copying pywfa/tests/short.reference.fa -> build/lib.linux-armv7l-cpython-311/pywfa/tests 2023-09-18T15:44:42,374 running build_ext 2023-09-18T15:44:42,376 cc -c /tmp/tmp1kdt50q2.c -o tmp/tmp1kdt50q2.o -fopenmp 2023-09-18T15:44:42,432 building 'pywfa.align' extension 2023-09-18T15:44:42,433 creating build/temp.linux-armv7l-cpython-311 2023-09-18T15:44:42,433 creating build/temp.linux-armv7l-cpython-311/pywfa 2023-09-18T15:44:42,434 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I. -I/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a -I/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib -I/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/lib -I/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/utils -I/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/wavefront -I/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/bindings/cpp -I/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/system -I/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/alignment -I/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa -I/usr/include/python3.11 -c pywfa/align.c -o build/temp.linux-armv7l-cpython-311/pywfa/align.o -Wno-unused-function -Wno-unused-result -Wno-ignored-qualifiers -Wno-deprecated-declarations 2023-09-18T15:45:07,523 warning: no library file corresponding to '/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/lib' found (skipping) 2023-09-18T15:45:07,523 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pywfa/align.o /tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/lib/libwfa.a -L/tmp/pip-wheel-ies9sx1z/pywfa_a42a5a3c4c3243448133b43e0e92851a/pywfa/WFA2_lib/lib -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pywfa/align.cpython-311-arm-linux-gnueabihf.so 2023-09-18T15:45:07,658 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-18T15:45:07,659 !! 2023-09-18T15:45:07,660 ******************************************************************************** 2023-09-18T15:45:07,660 Please avoid running ``setup.py`` directly. 2023-09-18T15:45:07,660 Instead, use pypa/build, pypa/installer or other 2023-09-18T15:45:07,661 standards-based tools. 2023-09-18T15:45:07,662 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-18T15:45:07,662 ******************************************************************************** 2023-09-18T15:45:07,663 !! 2023-09-18T15:45:07,663 self.initialize_options() 2023-09-18T15:45:07,682 installing to build/bdist.linux-armv7l/wheel 2023-09-18T15:45:07,682 running install 2023-09-18T15:45:07,716 make: *** No rule to make target 'clean'. Stop. 2023-09-18T15:45:07,717 running install_lib 2023-09-18T15:45:07,741 creating build/bdist.linux-armv7l 2023-09-18T15:45:07,742 creating build/bdist.linux-armv7l/wheel 2023-09-18T15:45:07,743 creating build/bdist.linux-armv7l/wheel/pywfa 2023-09-18T15:45:07,744 copying build/lib.linux-armv7l-cpython-311/pywfa/align.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pywfa 2023-09-18T15:45:07,761 creating build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib 2023-09-18T15:45:07,763 creating build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/img 2023-09-18T15:45:07,764 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/img/heuristics.none.png -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/img 2023-09-18T15:45:07,774 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/img/heuristics.band.10.150.png -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/img 2023-09-18T15:45:07,783 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/img/heuristics.wfadap.10.50.10.png -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/img 2023-09-18T15:45:07,793 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/img/heuristics.band.10.10.png -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/img 2023-09-18T15:45:07,804 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/img/heuristics.aband.50.50.png -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/img 2023-09-18T15:45:07,815 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/img/heuristics.aband.10.10.png -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/img 2023-09-18T15:45:07,826 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/img/heuristics.wfadap.10.50.1.png -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/img 2023-09-18T15:45:07,837 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/img/wfa.vs.swg.png -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/img 2023-09-18T15:45:07,860 creating build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/tools 2023-09-18T15:45:07,862 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/tools/README.md -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/tools 2023-09-18T15:45:07,864 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/tools/.DS_Store -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/tools 2023-09-18T15:45:07,867 creating build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/examples 2023-09-18T15:45:07,868 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/examples/Makefile -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/examples 2023-09-18T15:45:07,871 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/examples/wfa_adapt.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/examples 2023-09-18T15:45:07,873 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/examples/wfa_repeated.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/examples 2023-09-18T15:45:07,875 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/examples/wfa_lambda.cpp -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/examples 2023-09-18T15:45:07,877 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/examples/README.md -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/examples 2023-09-18T15:45:07,879 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/examples/wfa_bindings.cpp -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/examples 2023-09-18T15:45:07,881 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/examples/wfa_basic.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/examples 2023-09-18T15:45:07,884 creating build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,885 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/bitmap.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,888 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_bialign.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,891 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_pcigar.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,894 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_compute_affine2p.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,897 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_align.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,901 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/profiler_counter.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,904 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_backtrace_offload.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,907 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_backtrace.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,910 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_compute_edit.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,913 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_slab.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,916 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_aligner.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,919 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,922 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_plot.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,925 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_extend.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,928 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/affine2p_penalties.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,930 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/dna_text.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,932 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_components.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,935 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_attributes.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,938 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_compute_linear.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,941 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/mm_stack.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,944 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/affine_penalties.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,946 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_backtrace_buffer.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,949 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/score_matrix.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,951 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/vector.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,954 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/commons.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,956 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/heatmap.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,959 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_penalties.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,961 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/string_padded.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,964 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/mm_allocator.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,967 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_display.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,970 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_compute.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,973 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_compute_affine.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,976 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_heuristic.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,980 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/cigar.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,983 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/sequence_buffer.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,985 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/wavefront_debug.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,988 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/build/profiler_timer.o -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/build 2023-09-18T15:45:07,991 creating build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/system 2023-09-18T15:45:07,992 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/system/profiler_counter.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/system 2023-09-18T15:45:07,995 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/system/Makefile -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/system 2023-09-18T15:45:07,997 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/system/profiler_timer.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/system 2023-09-18T15:45:08,000 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/system/profiler_timer.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/system 2023-09-18T15:45:08,002 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/system/mm_allocator.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/system 2023-09-18T15:45:08,005 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/system/profiler_counter.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/system 2023-09-18T15:45:08,007 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/system/mm_stack.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/system 2023-09-18T15:45:08,010 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/system/mm_stack.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/system 2023-09-18T15:45:08,012 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/system/mm_allocator.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/system 2023-09-18T15:45:08,015 creating build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/utils 2023-09-18T15:45:08,017 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils/Makefile -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/utils 2023-09-18T15:45:08,019 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils/commons.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/utils 2023-09-18T15:45:08,021 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils/heatmap.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/utils 2023-09-18T15:45:08,024 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils/bitmap.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/utils 2023-09-18T15:45:08,026 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils/bitmap.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/utils 2023-09-18T15:45:08,028 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils/vector.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/utils 2023-09-18T15:45:08,030 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils/vector.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/utils 2023-09-18T15:45:08,032 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils/heatmap.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/utils 2023-09-18T15:45:08,034 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils/string_padded.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/utils 2023-09-18T15:45:08,037 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils/sequence_buffer.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/utils 2023-09-18T15:45:08,038 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils/commons.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/utils 2023-09-18T15:45:08,040 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils/sequence_buffer.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/utils 2023-09-18T15:45:08,042 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils/dna_text.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/utils 2023-09-18T15:45:08,044 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils/dna_text.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/utils 2023-09-18T15:45:08,046 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/utils/string_padded.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/utils 2023-09-18T15:45:08,048 creating build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/scripts 2023-09-18T15:45:08,049 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/scripts/wfa.alg.rescore.py -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/scripts 2023-09-18T15:45:08,051 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/scripts/wfa.alg.cmp.score.sh -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/scripts 2023-09-18T15:45:08,053 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/scripts/seq2fasta.sh -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/scripts 2023-09-18T15:45:08,054 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/scripts/fasta2seq.sh -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/scripts 2023-09-18T15:45:08,056 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/scripts/wfa2png.py -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/scripts 2023-09-18T15:45:08,058 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/scripts/wfa.alg.cmp.py -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/scripts 2023-09-18T15:45:08,061 creating build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,062 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_compute_edit.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,065 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/Makefile -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,066 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_display.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,069 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_align.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,071 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_components.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,073 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_bialign.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,076 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_align.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,077 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_debug.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,079 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_attributes.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,081 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_compute_affine.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,084 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,086 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_extend.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,088 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_penalties.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,090 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_backtrace.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,093 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_compute_linear.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,095 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_slab.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,097 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_offset.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,098 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_components.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,101 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_compute.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,102 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_aligner.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,105 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_backtrace.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,106 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_extend.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,108 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_slab.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,110 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_compute.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,113 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_compute_affine.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,114 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,116 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_attributes.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,117 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,120 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_aligner.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,122 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_debug.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,124 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_heuristic.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,126 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_heuristic.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,128 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_pcigar.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,130 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,133 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,135 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_compute_linear.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,137 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,139 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_display.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,141 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_penalties.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,143 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,145 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_compute_edit.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,147 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_pcigar.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,149 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_bialign.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,151 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_plot.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,152 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront_plot.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,155 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/wavefront/wavefront.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/wavefront 2023-09-18T15:45:08,157 creating build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/alignment 2023-09-18T15:45:08,158 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment/Makefile -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/alignment 2023-09-18T15:45:08,160 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment/score_matrix.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/alignment 2023-09-18T15:45:08,162 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment/score_matrix.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/alignment 2023-09-18T15:45:08,163 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment/linear_penalties.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/alignment 2023-09-18T15:45:08,165 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment/affine2p_penalties.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/alignment 2023-09-18T15:45:08,167 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment/affine_penalties.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/alignment 2023-09-18T15:45:08,169 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment/cigar.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/alignment 2023-09-18T15:45:08,170 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment/affine2p_penalties.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/alignment 2023-09-18T15:45:08,172 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment/cigar.c -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/alignment 2023-09-18T15:45:08,174 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/alignment/affine_penalties.h -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/alignment 2023-09-18T15:45:08,177 creating build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/lib 2023-09-18T15:45:08,177 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA2_lib/lib/libwfa.a -> build/bdist.linux-armv7l/wheel/pywfa/WFA2_lib/lib 2023-09-18T15:45:08,192 copying build/lib.linux-armv7l-cpython-311/pywfa/align.pxd -> build/bdist.linux-armv7l/wheel/pywfa 2023-09-18T15:45:08,194 copying build/lib.linux-armv7l-cpython-311/pywfa/align.c -> build/bdist.linux-armv7l/wheel/pywfa 2023-09-18T15:45:08,209 copying build/lib.linux-armv7l-cpython-311/pywfa/align.pyx -> build/bdist.linux-armv7l/wheel/pywfa 2023-09-18T15:45:08,211 copying build/lib.linux-armv7l-cpython-311/pywfa/.DS_Store -> build/bdist.linux-armv7l/wheel/pywfa 2023-09-18T15:45:08,214 copying build/lib.linux-armv7l-cpython-311/pywfa/__init__.py -> build/bdist.linux-armv7l/wheel/pywfa 2023-09-18T15:45:08,215 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA_wrap.c -> build/bdist.linux-armv7l/wheel/pywfa 2023-09-18T15:45:08,219 copying build/lib.linux-armv7l-cpython-311/pywfa/WFA_wrap.pxd -> build/bdist.linux-armv7l/wheel/pywfa 2023-09-18T15:45:08,222 creating build/bdist.linux-armv7l/wheel/pywfa/tests 2023-09-18T15:45:08,223 copying build/lib.linux-armv7l-cpython-311/pywfa/tests/short.reference.fa -> build/bdist.linux-armv7l/wheel/pywfa/tests 2023-09-18T15:45:08,225 copying build/lib.linux-armv7l-cpython-311/pywfa/tests/test.py -> build/bdist.linux-armv7l/wheel/pywfa/tests 2023-09-18T15:45:08,228 copying build/lib.linux-armv7l-cpython-311/pywfa/tests/short.fa -> build/bdist.linux-armv7l/wheel/pywfa/tests 2023-09-18T15:45:08,230 copying build/lib.linux-armv7l-cpython-311/pywfa/tests/long.fa -> build/bdist.linux-armv7l/wheel/pywfa/tests 2023-09-18T15:45:08,232 copying build/lib.linux-armv7l-cpython-311/pywfa/tests/long.reference.fa -> build/bdist.linux-armv7l/wheel/pywfa/tests 2023-09-18T15:45:08,234 copying build/lib.linux-armv7l-cpython-311/pywfa/tests/__init__.py -> build/bdist.linux-armv7l/wheel/pywfa/tests 2023-09-18T15:45:08,236 copying build/lib.linux-armv7l-cpython-311/pywfa/align.cpython-39-darwin.so -> build/bdist.linux-armv7l/wheel/pywfa 2023-09-18T15:45:08,246 running install_egg_info 2023-09-18T15:45:08,281 Copying pywfa.egg-info to build/bdist.linux-armv7l/wheel/pywfa-0.3.0-py3.11.egg-info 2023-09-18T15:45:08,295 running install_scripts 2023-09-18T15:45:08,357 creating build/bdist.linux-armv7l/wheel/pywfa-0.3.0.dist-info/WHEEL 2023-09-18T15:45:08,359 creating '/tmp/pip-wheel-c1gnk1dp/pywfa-0.3.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-18T15:45:08,362 adding 'pywfa/.DS_Store' 2023-09-18T15:45:08,373 adding 'pywfa/WFA_wrap.c' 2023-09-18T15:45:08,377 adding 'pywfa/WFA_wrap.pxd' 2023-09-18T15:45:08,379 adding 'pywfa/__init__.py' 2023-09-18T15:45:08,440 adding 'pywfa/align.c' 2023-09-18T15:45:08,614 adding 'pywfa/align.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T15:45:08,677 adding 'pywfa/align.cpython-39-darwin.so' 2023-09-18T15:45:08,682 adding 'pywfa/align.pxd' 2023-09-18T15:45:08,685 adding 'pywfa/align.pyx' 2023-09-18T15:45:08,687 adding 'pywfa/WFA2_lib/alignment/Makefile' 2023-09-18T15:45:08,689 adding 'pywfa/WFA2_lib/alignment/affine2p_penalties.c' 2023-09-18T15:45:08,690 adding 'pywfa/WFA2_lib/alignment/affine2p_penalties.h' 2023-09-18T15:45:08,692 adding 'pywfa/WFA2_lib/alignment/affine_penalties.c' 2023-09-18T15:45:08,693 adding 'pywfa/WFA2_lib/alignment/affine_penalties.h' 2023-09-18T15:45:08,696 adding 'pywfa/WFA2_lib/alignment/cigar.c' 2023-09-18T15:45:08,697 adding 'pywfa/WFA2_lib/alignment/cigar.h' 2023-09-18T15:45:08,699 adding 'pywfa/WFA2_lib/alignment/linear_penalties.h' 2023-09-18T15:45:08,701 adding 'pywfa/WFA2_lib/alignment/score_matrix.c' 2023-09-18T15:45:08,702 adding 'pywfa/WFA2_lib/alignment/score_matrix.h' 2023-09-18T15:45:08,705 adding 'pywfa/WFA2_lib/build/affine2p_penalties.o' 2023-09-18T15:45:08,706 adding 'pywfa/WFA2_lib/build/affine_penalties.o' 2023-09-18T15:45:08,708 adding 'pywfa/WFA2_lib/build/bitmap.o' 2023-09-18T15:45:08,714 adding 'pywfa/WFA2_lib/build/cigar.o' 2023-09-18T15:45:08,716 adding 'pywfa/WFA2_lib/build/commons.o' 2023-09-18T15:45:08,718 adding 'pywfa/WFA2_lib/build/dna_text.o' 2023-09-18T15:45:08,720 adding 'pywfa/WFA2_lib/build/heatmap.o' 2023-09-18T15:45:08,726 adding 'pywfa/WFA2_lib/build/mm_allocator.o' 2023-09-18T15:45:08,730 adding 'pywfa/WFA2_lib/build/mm_stack.o' 2023-09-18T15:45:08,734 adding 'pywfa/WFA2_lib/build/profiler_counter.o' 2023-09-18T15:45:08,738 adding 'pywfa/WFA2_lib/build/profiler_timer.o' 2023-09-18T15:45:08,741 adding 'pywfa/WFA2_lib/build/score_matrix.o' 2023-09-18T15:45:08,744 adding 'pywfa/WFA2_lib/build/sequence_buffer.o' 2023-09-18T15:45:08,747 adding 'pywfa/WFA2_lib/build/string_padded.o' 2023-09-18T15:45:08,749 adding 'pywfa/WFA2_lib/build/vector.o' 2023-09-18T15:45:08,752 adding 'pywfa/WFA2_lib/build/wavefront.o' 2023-09-18T15:45:08,758 adding 'pywfa/WFA2_lib/build/wavefront_align.o' 2023-09-18T15:45:08,764 adding 'pywfa/WFA2_lib/build/wavefront_aligner.o' 2023-09-18T15:45:08,767 adding 'pywfa/WFA2_lib/build/wavefront_attributes.o' 2023-09-18T15:45:08,773 adding 'pywfa/WFA2_lib/build/wavefront_backtrace.o' 2023-09-18T15:45:08,779 adding 'pywfa/WFA2_lib/build/wavefront_backtrace_buffer.o' 2023-09-18T15:45:08,783 adding 'pywfa/WFA2_lib/build/wavefront_backtrace_offload.o' 2023-09-18T15:45:08,790 adding 'pywfa/WFA2_lib/build/wavefront_bialign.o' 2023-09-18T15:45:08,796 adding 'pywfa/WFA2_lib/build/wavefront_components.o' 2023-09-18T15:45:08,802 adding 'pywfa/WFA2_lib/build/wavefront_compute.o' 2023-09-18T15:45:08,807 adding 'pywfa/WFA2_lib/build/wavefront_compute_affine.o' 2023-09-18T15:45:08,812 adding 'pywfa/WFA2_lib/build/wavefront_compute_affine2p.o' 2023-09-18T15:45:08,818 adding 'pywfa/WFA2_lib/build/wavefront_compute_edit.o' 2023-09-18T15:45:08,823 adding 'pywfa/WFA2_lib/build/wavefront_compute_linear.o' 2023-09-18T15:45:08,827 adding 'pywfa/WFA2_lib/build/wavefront_debug.o' 2023-09-18T15:45:08,833 adding 'pywfa/WFA2_lib/build/wavefront_display.o' 2023-09-18T15:45:08,838 adding 'pywfa/WFA2_lib/build/wavefront_extend.o' 2023-09-18T15:45:08,845 adding 'pywfa/WFA2_lib/build/wavefront_heuristic.o' 2023-09-18T15:45:08,849 adding 'pywfa/WFA2_lib/build/wavefront_pcigar.o' 2023-09-18T15:45:08,852 adding 'pywfa/WFA2_lib/build/wavefront_penalties.o' 2023-09-18T15:45:08,856 adding 'pywfa/WFA2_lib/build/wavefront_plot.o' 2023-09-18T15:45:08,860 adding 'pywfa/WFA2_lib/build/wavefront_slab.o' 2023-09-18T15:45:08,862 adding 'pywfa/WFA2_lib/examples/Makefile' 2023-09-18T15:45:08,863 adding 'pywfa/WFA2_lib/examples/README.md' 2023-09-18T15:45:08,865 adding 'pywfa/WFA2_lib/examples/wfa_adapt.c' 2023-09-18T15:45:08,867 adding 'pywfa/WFA2_lib/examples/wfa_basic.c' 2023-09-18T15:45:08,868 adding 'pywfa/WFA2_lib/examples/wfa_bindings.cpp' 2023-09-18T15:45:08,870 adding 'pywfa/WFA2_lib/examples/wfa_lambda.cpp' 2023-09-18T15:45:08,871 adding 'pywfa/WFA2_lib/examples/wfa_repeated.c' 2023-09-18T15:45:08,899 adding 'pywfa/WFA2_lib/img/heuristics.aband.10.10.png' 2023-09-18T15:45:08,935 adding 'pywfa/WFA2_lib/img/heuristics.aband.50.50.png' 2023-09-18T15:45:08,966 adding 'pywfa/WFA2_lib/img/heuristics.band.10.10.png' 2023-09-18T15:45:09,005 adding 'pywfa/WFA2_lib/img/heuristics.band.10.150.png' 2023-09-18T15:45:09,055 adding 'pywfa/WFA2_lib/img/heuristics.none.png' 2023-09-18T15:45:09,091 adding 'pywfa/WFA2_lib/img/heuristics.wfadap.10.50.1.png' 2023-09-18T15:45:09,141 adding 'pywfa/WFA2_lib/img/heuristics.wfadap.10.50.10.png' 2023-09-18T15:45:09,247 adding 'pywfa/WFA2_lib/img/wfa.vs.swg.png' 2023-09-18T15:45:09,379 adding 'pywfa/WFA2_lib/lib/libwfa.a' 2023-09-18T15:45:09,388 adding 'pywfa/WFA2_lib/scripts/fasta2seq.sh' 2023-09-18T15:45:09,390 adding 'pywfa/WFA2_lib/scripts/seq2fasta.sh' 2023-09-18T15:45:09,392 adding 'pywfa/WFA2_lib/scripts/wfa.alg.cmp.py' 2023-09-18T15:45:09,393 adding 'pywfa/WFA2_lib/scripts/wfa.alg.cmp.score.sh' 2023-09-18T15:45:09,395 adding 'pywfa/WFA2_lib/scripts/wfa.alg.rescore.py' 2023-09-18T15:45:09,397 adding 'pywfa/WFA2_lib/scripts/wfa2png.py' 2023-09-18T15:45:09,399 adding 'pywfa/WFA2_lib/system/Makefile' 2023-09-18T15:45:09,402 adding 'pywfa/WFA2_lib/system/mm_allocator.c' 2023-09-18T15:45:09,404 adding 'pywfa/WFA2_lib/system/mm_allocator.h' 2023-09-18T15:45:09,406 adding 'pywfa/WFA2_lib/system/mm_stack.c' 2023-09-18T15:45:09,408 adding 'pywfa/WFA2_lib/system/mm_stack.h' 2023-09-18T15:45:09,410 adding 'pywfa/WFA2_lib/system/profiler_counter.c' 2023-09-18T15:45:09,412 adding 'pywfa/WFA2_lib/system/profiler_counter.h' 2023-09-18T15:45:09,414 adding 'pywfa/WFA2_lib/system/profiler_timer.c' 2023-09-18T15:45:09,416 adding 'pywfa/WFA2_lib/system/profiler_timer.h' 2023-09-18T15:45:09,418 adding 'pywfa/WFA2_lib/tools/.DS_Store' 2023-09-18T15:45:09,420 adding 'pywfa/WFA2_lib/tools/README.md' 2023-09-18T15:45:09,422 adding 'pywfa/WFA2_lib/utils/Makefile' 2023-09-18T15:45:09,424 adding 'pywfa/WFA2_lib/utils/bitmap.c' 2023-09-18T15:45:09,426 adding 'pywfa/WFA2_lib/utils/bitmap.h' 2023-09-18T15:45:09,427 adding 'pywfa/WFA2_lib/utils/commons.c' 2023-09-18T15:45:09,429 adding 'pywfa/WFA2_lib/utils/commons.h' 2023-09-18T15:45:09,431 adding 'pywfa/WFA2_lib/utils/dna_text.c' 2023-09-18T15:45:09,433 adding 'pywfa/WFA2_lib/utils/dna_text.h' 2023-09-18T15:45:09,434 adding 'pywfa/WFA2_lib/utils/heatmap.c' 2023-09-18T15:45:09,436 adding 'pywfa/WFA2_lib/utils/heatmap.h' 2023-09-18T15:45:09,438 adding 'pywfa/WFA2_lib/utils/sequence_buffer.c' 2023-09-18T15:45:09,439 adding 'pywfa/WFA2_lib/utils/sequence_buffer.h' 2023-09-18T15:45:09,441 adding 'pywfa/WFA2_lib/utils/string_padded.c' 2023-09-18T15:45:09,443 adding 'pywfa/WFA2_lib/utils/string_padded.h' 2023-09-18T15:45:09,444 adding 'pywfa/WFA2_lib/utils/vector.c' 2023-09-18T15:45:09,446 adding 'pywfa/WFA2_lib/utils/vector.h' 2023-09-18T15:45:09,449 adding 'pywfa/WFA2_lib/wavefront/Makefile' 2023-09-18T15:45:09,451 adding 'pywfa/WFA2_lib/wavefront/wavefront.c' 2023-09-18T15:45:09,453 adding 'pywfa/WFA2_lib/wavefront/wavefront.h' 2023-09-18T15:45:09,455 adding 'pywfa/WFA2_lib/wavefront/wavefront_align.c' 2023-09-18T15:45:09,457 adding 'pywfa/WFA2_lib/wavefront/wavefront_align.h' 2023-09-18T15:45:09,460 adding 'pywfa/WFA2_lib/wavefront/wavefront_aligner.c' 2023-09-18T15:45:09,462 adding 'pywfa/WFA2_lib/wavefront/wavefront_aligner.h' 2023-09-18T15:45:09,464 adding 'pywfa/WFA2_lib/wavefront/wavefront_attributes.c' 2023-09-18T15:45:09,466 adding 'pywfa/WFA2_lib/wavefront/wavefront_attributes.h' 2023-09-18T15:45:09,468 adding 'pywfa/WFA2_lib/wavefront/wavefront_backtrace.c' 2023-09-18T15:45:09,470 adding 'pywfa/WFA2_lib/wavefront/wavefront_backtrace.h' 2023-09-18T15:45:09,473 adding 'pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.c' 2023-09-18T15:45:09,475 adding 'pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.h' 2023-09-18T15:45:09,477 adding 'pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.c' 2023-09-18T15:45:09,479 adding 'pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.h' 2023-09-18T15:45:09,482 adding 'pywfa/WFA2_lib/wavefront/wavefront_bialign.c' 2023-09-18T15:45:09,484 adding 'pywfa/WFA2_lib/wavefront/wavefront_bialign.h' 2023-09-18T15:45:09,486 adding 'pywfa/WFA2_lib/wavefront/wavefront_components.c' 2023-09-18T15:45:09,488 adding 'pywfa/WFA2_lib/wavefront/wavefront_components.h' 2023-09-18T15:45:09,491 adding 'pywfa/WFA2_lib/wavefront/wavefront_compute.c' 2023-09-18T15:45:09,493 adding 'pywfa/WFA2_lib/wavefront/wavefront_compute.h' 2023-09-18T15:45:09,495 adding 'pywfa/WFA2_lib/wavefront/wavefront_compute_affine.c' 2023-09-18T15:45:09,496 adding 'pywfa/WFA2_lib/wavefront/wavefront_compute_affine.h' 2023-09-18T15:45:09,499 adding 'pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.c' 2023-09-18T15:45:09,500 adding 'pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.h' 2023-09-18T15:45:09,503 adding 'pywfa/WFA2_lib/wavefront/wavefront_compute_edit.c' 2023-09-18T15:45:09,505 adding 'pywfa/WFA2_lib/wavefront/wavefront_compute_edit.h' 2023-09-18T15:45:09,507 adding 'pywfa/WFA2_lib/wavefront/wavefront_compute_linear.c' 2023-09-18T15:45:09,508 adding 'pywfa/WFA2_lib/wavefront/wavefront_compute_linear.h' 2023-09-18T15:45:09,511 adding 'pywfa/WFA2_lib/wavefront/wavefront_debug.c' 2023-09-18T15:45:09,512 adding 'pywfa/WFA2_lib/wavefront/wavefront_debug.h' 2023-09-18T15:45:09,515 adding 'pywfa/WFA2_lib/wavefront/wavefront_display.c' 2023-09-18T15:45:09,516 adding 'pywfa/WFA2_lib/wavefront/wavefront_display.h' 2023-09-18T15:45:09,519 adding 'pywfa/WFA2_lib/wavefront/wavefront_extend.c' 2023-09-18T15:45:09,521 adding 'pywfa/WFA2_lib/wavefront/wavefront_extend.h' 2023-09-18T15:45:09,524 adding 'pywfa/WFA2_lib/wavefront/wavefront_heuristic.c' 2023-09-18T15:45:09,526 adding 'pywfa/WFA2_lib/wavefront/wavefront_heuristic.h' 2023-09-18T15:45:09,527 adding 'pywfa/WFA2_lib/wavefront/wavefront_offset.h' 2023-09-18T15:45:09,529 adding 'pywfa/WFA2_lib/wavefront/wavefront_pcigar.c' 2023-09-18T15:45:09,531 adding 'pywfa/WFA2_lib/wavefront/wavefront_pcigar.h' 2023-09-18T15:45:09,533 adding 'pywfa/WFA2_lib/wavefront/wavefront_penalties.c' 2023-09-18T15:45:09,535 adding 'pywfa/WFA2_lib/wavefront/wavefront_penalties.h' 2023-09-18T15:45:09,537 adding 'pywfa/WFA2_lib/wavefront/wavefront_plot.c' 2023-09-18T15:45:09,539 adding 'pywfa/WFA2_lib/wavefront/wavefront_plot.h' 2023-09-18T15:45:09,541 adding 'pywfa/WFA2_lib/wavefront/wavefront_slab.c' 2023-09-18T15:45:09,543 adding 'pywfa/WFA2_lib/wavefront/wavefront_slab.h' 2023-09-18T15:45:09,545 adding 'pywfa/tests/__init__.py' 2023-09-18T15:45:09,547 adding 'pywfa/tests/long.fa' 2023-09-18T15:45:09,548 adding 'pywfa/tests/long.reference.fa' 2023-09-18T15:45:09,550 adding 'pywfa/tests/short.fa' 2023-09-18T15:45:09,552 adding 'pywfa/tests/short.reference.fa' 2023-09-18T15:45:09,554 adding 'pywfa/tests/test.py' 2023-09-18T15:45:09,556 adding 'pywfa-0.3.0.dist-info/LICENSE.md' 2023-09-18T15:45:09,558 adding 'pywfa-0.3.0.dist-info/METADATA' 2023-09-18T15:45:09,559 adding 'pywfa-0.3.0.dist-info/WHEEL' 2023-09-18T15:45:09,561 adding 'pywfa-0.3.0.dist-info/top_level.txt' 2023-09-18T15:45:09,564 adding 'pywfa-0.3.0.dist-info/RECORD' 2023-09-18T15:45:09,609 removing build/bdist.linux-armv7l/wheel 2023-09-18T15:45:09,802 Building wheel for pywfa (setup.py): finished with status 'done' 2023-09-18T15:45:09,849 Created wheel for pywfa: filename=pywfa-0.3.0-cp311-cp311-linux_armv7l.whl size=3774794 sha256=740370633dc0f4023ace69c48fd26f6acc24e15aac195ef850bcd731e64ca731 2023-09-18T15:45:09,850 Stored in directory: /tmp/pip-ephem-wheel-cache-z73g5ml2/wheels/01/d0/12/829ed19d371a1f7ec0e7e26a7f13d199ed3fb0a1390c817d91 2023-09-18T15:45:09,866 Successfully built pywfa 2023-09-18T15:45:09,988 Removed build tracker: '/tmp/pip-build-tracker-habe29zp'