2023-09-18T22:24:00,213 Created temporary directory: /tmp/pip-build-tracker-3sgdols2 2023-09-18T22:24:00,214 Initialized build tracking at /tmp/pip-build-tracker-3sgdols2 2023-09-18T22:24:00,215 Created build tracker: /tmp/pip-build-tracker-3sgdols2 2023-09-18T22:24:00,215 Entered build tracker: /tmp/pip-build-tracker-3sgdols2 2023-09-18T22:24:00,216 Created temporary directory: /tmp/pip-wheel-uau9l7fx 2023-09-18T22:24:00,219 Created temporary directory: /tmp/pip-ephem-wheel-cache-f4zoaozx 2023-09-18T22:24:00,242 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-18T22:24:00,246 2 location(s) to search for versions of glycopeptidepy: 2023-09-18T22:24:00,246 * https://pypi.org/simple/glycopeptidepy/ 2023-09-18T22:24:00,246 * https://www.piwheels.org/simple/glycopeptidepy/ 2023-09-18T22:24:00,247 Fetching project page and analyzing links: https://pypi.org/simple/glycopeptidepy/ 2023-09-18T22:24:00,247 Getting page https://pypi.org/simple/glycopeptidepy/ 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https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.9-cp37-cp37m-linux_armv6l.whl#sha256=6ae840262993fd30d3cc9886ab9c084101c73d2fe5ff93f6790e38e23c8c45e8 (from https://www.piwheels.org/simple/glycopeptidepy/) 2023-09-18T22:24:00,940 Skipping link: not a file: https://www.piwheels.org/simple/glycopeptidepy/ 2023-09-18T22:24:00,941 Skipping link: not a file: https://pypi.org/simple/glycopeptidepy/ 2023-09-18T22:24:00,961 Given no hashes to check 1 links for project 'glycopeptidepy': discarding no candidates 2023-09-18T22:24:00,979 Collecting glycopeptidepy==0.0.19 2023-09-18T22:24:00,981 Created temporary directory: /tmp/pip-unpack-5hnj56rz 2023-09-18T22:24:01,828 Downloading glycopeptidepy-0.0.19.tar.gz (1.3 MB) 2023-09-18T22:24:02,794 Added glycopeptidepy==0.0.19 from https://files.pythonhosted.org/packages/70/95/943022113c136108e428626e06b6b0b54cc09255558ca5be29d71c92ecc8/glycopeptidepy-0.0.19.tar.gz to build tracker '/tmp/pip-build-tracker-3sgdols2' 2023-09-18T22:24:02,798 Created temporary directory: /tmp/pip-build-env-ciqhx5dl 2023-09-18T22:24:02,803 Installing build dependencies: started 2023-09-18T22:24:02,804 Running command pip subprocess to install build dependencies 2023-09-18T22:24:03,939 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-18T22:24:04,422 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-18T22:24:06,083 Collecting setuptools 2023-09-18T22:24:06,084 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-18T22:24:06,089 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-18T22:24:06,304 Collecting wheel 2023-09-18T22:24:06,319 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-18T22:24:07,718 Collecting Cython 2023-09-18T22:24:07,720 Obtaining dependency information for Cython from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata 2023-09-18T22:24:07,725 Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-18T22:24:07,991 Collecting glypy 2023-09-18T22:24:08,007 Downloading https://www.piwheels.org/simple/glypy/glypy-1.0.3-cp311-cp311-linux_armv7l.whl (1.7 MB) 2023-09-18T22:24:08,192 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 9.8 MB/s eta 0:00:00 2023-09-18T22:24:08,572 Collecting hjson (from glypy) 2023-09-18T22:24:08,592 Using cached https://www.piwheels.org/simple/hjson/hjson-3.1.0-py3-none-any.whl (54 kB) 2023-09-18T22:24:08,691 Collecting six (from glypy) 2023-09-18T22:24:08,704 Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB) 2023-09-18T22:24:08,735 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-18T22:24:08,772 Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB) 2023-09-18T22:24:11,323 Installing collected packages: hjson, wheel, six, setuptools, Cython, glypy 2023-09-18T22:24:11,554 Creating /tmp/pip-build-env-ciqhx5dl/overlay/local/bin 2023-09-18T22:24:11,556 changing mode of /tmp/pip-build-env-ciqhx5dl/overlay/local/bin/hjson to 755 2023-09-18T22:24:11,779 changing mode of /tmp/pip-build-env-ciqhx5dl/overlay/local/bin/wheel to 755 2023-09-18T22:24:16,716 changing mode of /tmp/pip-build-env-ciqhx5dl/overlay/local/bin/cygdb to 755 2023-09-18T22:24:16,718 changing mode of /tmp/pip-build-env-ciqhx5dl/overlay/local/bin/cython to 755 2023-09-18T22:24:16,720 changing mode of /tmp/pip-build-env-ciqhx5dl/overlay/local/bin/cythonize to 755 2023-09-18T22:24:18,001 Successfully installed Cython-3.0.2 glypy-1.0.3 hjson-3.1.0 setuptools-68.2.2 six-1.16.0 wheel-0.41.2 2023-09-18T22:24:18,576 Installing build dependencies: finished with status 'done' 2023-09-18T22:24:18,591 Getting requirements to build wheel: started 2023-09-18T22:24:18,592 Running command Getting requirements to build wheel 2023-09-18T22:24:23,019 /tmp/pip-build-env-ciqhx5dl/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-uau9l7fx/glycopeptidepy_81e0ac0a23b04b229d068b7341112638/glycopeptidepy/_c/algorithm.pyx 2023-09-18T22:24:23,020 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T22:24:24,279 /tmp/pip-build-env-ciqhx5dl/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-uau9l7fx/glycopeptidepy_81e0ac0a23b04b229d068b7341112638/glycopeptidepy/_c/collectiontools.pxd 2023-09-18T22:24:24,280 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T22:24:26,059 /tmp/pip-build-env-ciqhx5dl/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-uau9l7fx/glycopeptidepy_81e0ac0a23b04b229d068b7341112638/glycopeptidepy/_c/count_table.pxd 2023-09-18T22:24:26,060 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T22:24:27,537 warning: glycopeptidepy/_c/count_table.pyx:15:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:27,555 warning: glycopeptidepy/_c/count_table.pyx:102:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:27,576 warning: glycopeptidepy/_c/count_table.pyx:184:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:27,579 warning: glycopeptidepy/_c/count_table.pyx:195:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:29,150 /tmp/pip-build-env-ciqhx5dl/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-uau9l7fx/glycopeptidepy_81e0ac0a23b04b229d068b7341112638/glycopeptidepy/_c/parser.pxd 2023-09-18T22:24:29,151 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T22:24:31,033 warning: glycopeptidepy/_c/parser.pyx:224:23: Unreachable code 2023-09-18T22:24:31,354 /tmp/pip-build-env-ciqhx5dl/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-uau9l7fx/glycopeptidepy_81e0ac0a23b04b229d068b7341112638/glycopeptidepy/_c/structure/base.pxd 2023-09-18T22:24:31,354 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T22:24:31,365 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:31,366 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:31,367 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:31,368 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:31,437 warning: glycopeptidepy/_c/structure/base.pyx:11:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:31,439 warning: glycopeptidepy/_c/structure/base.pyx:17:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:32,943 /tmp/pip-build-env-ciqhx5dl/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-uau9l7fx/glycopeptidepy_81e0ac0a23b04b229d068b7341112638/glycopeptidepy/_c/structure/constants.pxd 2023-09-18T22:24:32,943 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T22:24:33,139 /tmp/pip-build-env-ciqhx5dl/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-uau9l7fx/glycopeptidepy_81e0ac0a23b04b229d068b7341112638/glycopeptidepy/_c/structure/fragment.pxd 2023-09-18T22:24:33,140 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T22:24:34,724 warning: glycopeptidepy/_c/structure/fragment.pyx:41:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:34,724 warning: glycopeptidepy/_c/structure/fragment.pyx:42:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:35,128 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:35,128 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:35,129 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:35,130 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:36,833 /tmp/pip-build-env-ciqhx5dl/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-uau9l7fx/glycopeptidepy_81e0ac0a23b04b229d068b7341112638/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd 2023-09-18T22:24:36,834 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T22:24:38,512 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:38,513 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:38,514 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:38,514 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:38,836 /tmp/pip-build-env-ciqhx5dl/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-uau9l7fx/glycopeptidepy_81e0ac0a23b04b229d068b7341112638/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd 2023-09-18T22:24:38,836 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T22:24:40,435 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:40,435 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:40,436 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:40,436 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:41,540 warning: glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx:1034:8: local variable 'total_core_count' referenced before assignment 2023-09-18T22:24:42,896 /tmp/pip-build-env-ciqhx5dl/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-uau9l7fx/glycopeptidepy_81e0ac0a23b04b229d068b7341112638/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd 2023-09-18T22:24:42,897 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T22:24:44,418 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:44,419 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:44,420 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:44,420 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:46,299 /tmp/pip-build-env-ciqhx5dl/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-uau9l7fx/glycopeptidepy_81e0ac0a23b04b229d068b7341112638/glycopeptidepy/_c/structure/glycan.pxd 2023-09-18T22:24:46,300 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T22:24:46,382 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:46,382 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:46,383 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:46,383 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:48,134 /tmp/pip-build-env-ciqhx5dl/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-uau9l7fx/glycopeptidepy_81e0ac0a23b04b229d068b7341112638/glycopeptidepy/_c/structure/modification/modification.pxd 2023-09-18T22:24:48,134 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T22:24:48,153 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:48,153 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:48,154 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:48,155 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:48,529 /tmp/pip-build-env-ciqhx5dl/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-uau9l7fx/glycopeptidepy_81e0ac0a23b04b229d068b7341112638/glycopeptidepy/_c/structure/modification/rule.pxd 2023-09-18T22:24:48,529 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T22:24:48,582 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:48,583 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:48,584 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:48,584 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:49,269 /tmp/pip-build-env-ciqhx5dl/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-uau9l7fx/glycopeptidepy_81e0ac0a23b04b229d068b7341112638/glycopeptidepy/_c/structure/modification/source.pxd 2023-09-18T22:24:49,270 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T22:24:49,332 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:49,333 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:49,333 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:49,334 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:50,181 /tmp/pip-build-env-ciqhx5dl/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-uau9l7fx/glycopeptidepy_81e0ac0a23b04b229d068b7341112638/glycopeptidepy/_c/structure/sequence_methods.pxd 2023-09-18T22:24:50,181 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-18T22:24:50,241 warning: glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:50,241 warning: glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:50,242 warning: glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:50,242 warning: glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-18T22:24:52,948 Compiling glycopeptidepy/_c/collectiontools.pyx because it changed. 2023-09-18T22:24:52,949 Compiling glycopeptidepy/_c/count_table.pyx because it changed. 2023-09-18T22:24:52,949 Compiling glycopeptidepy/_c/parser.pyx because it changed. 2023-09-18T22:24:52,950 Compiling glycopeptidepy/_c/structure/base.pyx because it changed. 2023-09-18T22:24:52,950 Compiling glycopeptidepy/_c/structure/fragment.pyx because it changed. 2023-09-18T22:24:52,951 Compiling glycopeptidepy/_c/structure/constants.pyx because it changed. 2023-09-18T22:24:52,952 Compiling glycopeptidepy/_c/structure/glycan.pyx because it changed. 2023-09-18T22:24:52,952 Compiling glycopeptidepy/_c/structure/sequence_methods.pyx because it changed. 2023-09-18T22:24:52,953 Compiling glycopeptidepy/_c/structure/modification/rule.pyx because it changed. 2023-09-18T22:24:52,953 Compiling glycopeptidepy/_c/structure/modification/modification.pyx because it changed. 2023-09-18T22:24:52,954 Compiling glycopeptidepy/_c/structure/modification/source.pyx because it changed. 2023-09-18T22:24:52,954 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it changed. 2023-09-18T22:24:52,955 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it changed. 2023-09-18T22:24:52,955 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it changed. 2023-09-18T22:24:52,956 Compiling glycopeptidepy/_c/algorithm.pyx because it changed. 2023-09-18T22:24:52,956 [ 1/15] Cythonizing glycopeptidepy/_c/algorithm.pyx 2023-09-18T22:24:52,956 [ 2/15] Cythonizing glycopeptidepy/_c/collectiontools.pyx 2023-09-18T22:24:52,957 [ 3/15] Cythonizing glycopeptidepy/_c/count_table.pyx 2023-09-18T22:24:52,957 [ 4/15] Cythonizing glycopeptidepy/_c/parser.pyx 2023-09-18T22:24:52,958 [ 5/15] Cythonizing glycopeptidepy/_c/structure/base.pyx 2023-09-18T22:24:52,958 [ 6/15] Cythonizing glycopeptidepy/_c/structure/constants.pyx 2023-09-18T22:24:52,959 [ 7/15] Cythonizing glycopeptidepy/_c/structure/fragment.pyx 2023-09-18T22:24:52,959 [ 8/15] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx 2023-09-18T22:24:52,960 [ 9/15] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx 2023-09-18T22:24:52,960 [10/15] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx 2023-09-18T22:24:52,961 [11/15] Cythonizing glycopeptidepy/_c/structure/glycan.pyx 2023-09-18T22:24:52,961 [12/15] Cythonizing glycopeptidepy/_c/structure/modification/modification.pyx 2023-09-18T22:24:52,962 [13/15] Cythonizing glycopeptidepy/_c/structure/modification/rule.pyx 2023-09-18T22:24:52,962 [14/15] Cythonizing glycopeptidepy/_c/structure/modification/source.pyx 2023-09-18T22:24:52,963 [15/15] Cythonizing glycopeptidepy/_c/structure/sequence_methods.pyx 2023-09-18T22:24:53,026 running egg_info 2023-09-18T22:24:53,031 writing glycopeptidepy.egg-info/PKG-INFO 2023-09-18T22:24:53,034 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2023-09-18T22:24:53,036 writing requirements to glycopeptidepy.egg-info/requires.txt 2023-09-18T22:24:53,037 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2023-09-18T22:24:53,082 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T22:24:53,086 reading manifest template 'MANIFEST.in' 2023-09-18T22:24:53,087 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-18T22:24:53,088 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-18T22:24:53,251 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T22:24:53,580 Getting requirements to build wheel: finished with status 'done' 2023-09-18T22:24:53,590 Created temporary directory: /tmp/pip-modern-metadata-_1xlaueo 2023-09-18T22:24:53,593 Preparing metadata (pyproject.toml): started 2023-09-18T22:24:53,594 Running command Preparing metadata (pyproject.toml) 2023-09-18T22:24:56,490 running dist_info 2023-09-18T22:24:56,510 creating /tmp/pip-modern-metadata-_1xlaueo/glycopeptidepy.egg-info 2023-09-18T22:24:56,515 writing /tmp/pip-modern-metadata-_1xlaueo/glycopeptidepy.egg-info/PKG-INFO 2023-09-18T22:24:56,518 writing dependency_links to /tmp/pip-modern-metadata-_1xlaueo/glycopeptidepy.egg-info/dependency_links.txt 2023-09-18T22:24:56,519 writing requirements to /tmp/pip-modern-metadata-_1xlaueo/glycopeptidepy.egg-info/requires.txt 2023-09-18T22:24:56,521 writing top-level names to /tmp/pip-modern-metadata-_1xlaueo/glycopeptidepy.egg-info/top_level.txt 2023-09-18T22:24:56,522 writing manifest file '/tmp/pip-modern-metadata-_1xlaueo/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T22:24:56,554 reading manifest file '/tmp/pip-modern-metadata-_1xlaueo/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T22:24:56,556 reading manifest template 'MANIFEST.in' 2023-09-18T22:24:56,557 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-18T22:24:56,558 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-18T22:24:56,716 writing manifest file '/tmp/pip-modern-metadata-_1xlaueo/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T22:24:56,717 creating '/tmp/pip-modern-metadata-_1xlaueo/glycopeptidepy-0.0.19.dist-info' 2023-09-18T22:24:56,940 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-18T22:24:56,944 Source in /tmp/pip-wheel-uau9l7fx/glycopeptidepy_81e0ac0a23b04b229d068b7341112638 has version 0.0.19, which satisfies requirement glycopeptidepy==0.0.19 from https://files.pythonhosted.org/packages/70/95/943022113c136108e428626e06b6b0b54cc09255558ca5be29d71c92ecc8/glycopeptidepy-0.0.19.tar.gz 2023-09-18T22:24:56,945 Removed glycopeptidepy==0.0.19 from https://files.pythonhosted.org/packages/70/95/943022113c136108e428626e06b6b0b54cc09255558ca5be29d71c92ecc8/glycopeptidepy-0.0.19.tar.gz from build tracker '/tmp/pip-build-tracker-3sgdols2' 2023-09-18T22:24:56,948 Created temporary directory: /tmp/pip-unpack-bkdbzpxt 2023-09-18T22:24:56,949 Created temporary directory: /tmp/pip-unpack-_gkwn3bc 2023-09-18T22:24:56,958 Building wheels for collected packages: glycopeptidepy 2023-09-18T22:24:56,962 Created temporary directory: /tmp/pip-wheel-jmrkni2d 2023-09-18T22:24:56,963 Destination directory: /tmp/pip-wheel-jmrkni2d 2023-09-18T22:24:56,965 Building wheel for glycopeptidepy (pyproject.toml): started 2023-09-18T22:24:56,966 Running command Building wheel for glycopeptidepy (pyproject.toml) 2023-09-18T22:24:59,832 running bdist_wheel 2023-09-18T22:24:59,870 running build 2023-09-18T22:24:59,871 running build_py 2023-09-18T22:24:59,882 creating build 2023-09-18T22:24:59,883 creating build/lib.linux-armv7l-cpython-311 2023-09-18T22:24:59,885 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T22:24:59,889 copying glycopeptidepy/algorithm.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T22:24:59,896 copying glycopeptidepy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T22:24:59,902 copying glycopeptidepy/enzyme.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T22:24:59,910 copying glycopeptidepy/version.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T22:24:59,918 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T22:24:59,922 copying glycopeptidepy/io/mzid.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T22:24:59,932 copying glycopeptidepy/io/fasta.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T22:24:59,944 copying glycopeptidepy/io/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T22:24:59,953 copying glycopeptidepy/io/utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T22:24:59,960 copying glycopeptidepy/io/annotation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T22:24:59,962 copying glycopeptidepy/io/nextprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T22:24:59,963 copying glycopeptidepy/io/uniprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-18T22:24:59,966 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T22:24:59,967 copying glycopeptidepy/utils/collectiontools.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T22:24:59,969 copying glycopeptidepy/utils/sequence_tree.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T22:24:59,971 copying glycopeptidepy/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T22:24:59,973 copying glycopeptidepy/utils/iterators.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T22:24:59,974 copying glycopeptidepy/utils/intervals.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T22:24:59,977 copying glycopeptidepy/utils/memoize.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-18T22:24:59,979 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T22:24:59,980 copying glycopeptidepy/structure/terminal_group.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T22:24:59,981 copying glycopeptidepy/structure/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T22:24:59,983 copying glycopeptidepy/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T22:24:59,985 copying glycopeptidepy/structure/parser.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T22:24:59,986 copying glycopeptidepy/structure/residue.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T22:24:59,988 copying glycopeptidepy/structure/composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T22:24:59,990 copying glycopeptidepy/structure/sequence_composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T22:24:59,992 copying glycopeptidepy/structure/glycan.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T22:24:59,994 copying glycopeptidepy/structure/constants.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T22:24:59,996 copying glycopeptidepy/structure/fragment.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-18T22:24:59,998 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T22:24:59,999 copying glycopeptidepy/_c/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T22:25:00,001 copying glycopeptidepy/_c/cythonize.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T22:25:00,003 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T22:25:00,004 copying glycopeptidepy/test/test_utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T22:25:00,006 copying glycopeptidepy/test/test_fragment.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T22:25:00,008 copying glycopeptidepy/test/test_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T22:25:00,010 copying glycopeptidepy/test/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T22:25:00,011 copying glycopeptidepy/test/test_intervals.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T22:25:00,013 copying glycopeptidepy/test/test_residue.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T22:25:00,015 copying glycopeptidepy/test/test_uniprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T22:25:00,017 copying glycopeptidepy/test/test_sequence_composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T22:25:00,019 copying glycopeptidepy/test/test_fragmentation_strategy.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T22:25:00,021 copying glycopeptidepy/test/test_modification.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T22:25:00,023 copying glycopeptidepy/test/test_fasta.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T22:25:00,026 copying glycopeptidepy/test/test_enzyme.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T22:25:00,028 copying glycopeptidepy/test/common.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T22:25:00,029 copying glycopeptidepy/test/test_algorithms.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-18T22:25:00,032 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T22:25:00,033 copying glycopeptidepy/io/cv/uniprot_ptm.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T22:25:00,035 copying glycopeptidepy/io/cv/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T22:25:00,036 copying glycopeptidepy/io/cv/term.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T22:25:00,038 copying glycopeptidepy/io/cv/peff.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-18T22:25:00,041 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T22:25:00,042 copying glycopeptidepy/structure/fragmentation_strategy/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T22:25:00,043 copying glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T22:25:00,045 copying glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T22:25:00,048 copying glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T22:25:00,051 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T22:25:00,052 copying glycopeptidepy/structure/modification/rule.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T22:25:00,055 copying glycopeptidepy/structure/modification/source.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T22:25:00,057 copying glycopeptidepy/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T22:25:00,059 copying glycopeptidepy/structure/modification/modification.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T22:25:00,061 copying glycopeptidepy/structure/modification/utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T22:25:00,063 copying glycopeptidepy/structure/modification/descriptors.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T22:25:00,064 copying glycopeptidepy/structure/modification/target.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T22:25:00,067 copying glycopeptidepy/structure/modification/glycosylation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-18T22:25:00,069 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T22:25:00,070 copying glycopeptidepy/structure/sequence/implementation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T22:25:00,073 copying glycopeptidepy/structure/sequence/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T22:25:00,075 copying glycopeptidepy/structure/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T22:25:00,077 copying glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T22:25:00,078 copying glycopeptidepy/structure/sequence/mutable_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-18T22:25:00,081 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T22:25:00,082 copying glycopeptidepy/structure/modification/data/unimod.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T22:25:00,085 copying glycopeptidepy/structure/modification/data/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T22:25:00,086 copying glycopeptidepy/structure/modification/data/patch_unimod.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T22:25:00,089 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T22:25:00,090 copying glycopeptidepy/_c/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T22:25:00,091 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:25:00,092 copying glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:25:00,094 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T22:25:00,095 copying glycopeptidepy/_c/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T22:25:00,096 running egg_info 2023-09-18T22:25:00,101 writing glycopeptidepy.egg-info/PKG-INFO 2023-09-18T22:25:00,104 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2023-09-18T22:25:00,105 writing requirements to glycopeptidepy.egg-info/requires.txt 2023-09-18T22:25:00,106 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2023-09-18T22:25:00,125 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T22:25:00,129 reading manifest template 'MANIFEST.in' 2023-09-18T22:25:00,130 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2023-09-18T22:25:00,131 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2023-09-18T22:25:00,293 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2023-09-18T22:25:00,300 copying glycopeptidepy/_c/algorithm.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T22:25:00,314 copying glycopeptidepy/_c/algorithm.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T22:25:00,316 copying glycopeptidepy/_c/collectiontools.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T22:25:00,324 copying glycopeptidepy/_c/collectiontools.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T22:25:00,326 copying glycopeptidepy/_c/collectiontools.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T22:25:00,329 copying glycopeptidepy/_c/compat.h -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T22:25:00,331 copying glycopeptidepy/_c/compat.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T22:25:00,333 copying glycopeptidepy/_c/count_table.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T22:25:00,351 copying glycopeptidepy/_c/count_table.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T22:25:00,353 copying glycopeptidepy/_c/count_table.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T22:25:00,355 copying glycopeptidepy/_c/parser.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T22:25:00,366 copying glycopeptidepy/_c/parser.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T22:25:00,368 copying glycopeptidepy/_c/parser.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T22:25:00,370 copying glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T22:25:00,373 copying glycopeptidepy/structure/modification/data/unimod.json -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-18T22:25:00,417 copying glycopeptidepy/_c/structure/base.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T22:25:00,448 copying glycopeptidepy/_c/structure/base.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T22:25:00,450 copying glycopeptidepy/_c/structure/base.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T22:25:00,453 copying glycopeptidepy/_c/structure/constants.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T22:25:00,465 copying glycopeptidepy/_c/structure/constants.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T22:25:00,467 copying glycopeptidepy/_c/structure/constants.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T22:25:00,469 copying glycopeptidepy/_c/structure/fragment.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T22:25:00,498 copying glycopeptidepy/_c/structure/fragment.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T22:25:00,500 copying glycopeptidepy/_c/structure/fragment.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T22:25:00,502 copying glycopeptidepy/_c/structure/glycan.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T22:25:00,522 copying glycopeptidepy/_c/structure/glycan.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T22:25:00,524 copying glycopeptidepy/_c/structure/glycan.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T22:25:00,526 copying glycopeptidepy/_c/structure/sequence_methods.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T22:25:00,546 copying glycopeptidepy/_c/structure/sequence_methods.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T22:25:00,548 copying glycopeptidepy/_c/structure/sequence_methods.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T22:25:00,551 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:25:00,562 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:25:00,563 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:25:00,565 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:25:00,592 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:25:00,594 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:25:00,597 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:25:00,625 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:25:00,627 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:25:00,629 copying glycopeptidepy/_c/structure/modification/modification.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T22:25:00,639 copying glycopeptidepy/_c/structure/modification/modification.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T22:25:00,641 copying glycopeptidepy/_c/structure/modification/modification.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T22:25:00,643 copying glycopeptidepy/_c/structure/modification/rule.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T22:25:00,657 copying glycopeptidepy/_c/structure/modification/rule.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T22:25:00,659 copying glycopeptidepy/_c/structure/modification/rule.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T22:25:00,662 copying glycopeptidepy/_c/structure/modification/source.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T22:25:00,671 copying glycopeptidepy/_c/structure/modification/source.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T22:25:00,673 copying glycopeptidepy/_c/structure/modification/source.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T22:25:00,675 copying glycopeptidepy/_c/structure/modification/target.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T22:25:00,683 running build_ext 2023-09-18T22:25:00,689 building 'glycopeptidepy._c.collectiontools' extension 2023-09-18T22:25:00,690 creating build/temp.linux-armv7l-cpython-311 2023-09-18T22:25:00,690 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy 2023-09-18T22:25:00,691 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-18T22:25:00,692 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/collectiontools.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.o 2023-09-18T22:25:07,463 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so 2023-09-18T22:25:07,575 building 'glycopeptidepy._c.count_table' extension 2023-09-18T22:25:07,576 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/count_table.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.o 2023-09-18T22:25:09,373 glycopeptidepy/_c/count_table.c:4460:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist’ defined but not used [-Wunused-function] 2023-09-18T22:25:09,374 4460 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist(size_t __pyx_v_n, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_inst) { 2023-09-18T22:25:09,375 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-18T22:25:09,378 glycopeptidepy/_c/count_table.c:4189:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get’ defined but not used [-Wunused-function] 2023-09-18T22:25:09,379 4189 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2023-09-18T22:25:09,379 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-18T22:25:09,383 glycopeptidepy/_c/count_table.c:3947:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put’ defined but not used [-Wunused-function] 2023-09-18T22:25:09,384 3947 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2023-09-18T22:25:09,384 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-18T22:25:24,677 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so 2023-09-18T22:25:24,798 building 'glycopeptidepy._c.parser' extension 2023-09-18T22:25:24,799 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iglycopeptidepy/_c -I/usr/include/python3.11 -c glycopeptidepy/_c/parser.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.o 2023-09-18T22:25:25,158 In file included from glycopeptidepy/_c/parser.c:1187: 2023-09-18T22:25:25,159 glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2023-09-18T22:25:25,159 38 | #define PyInt_Check PyLong_Check 2023-09-18T22:25:25,160 | 2023-09-18T22:25:25,160 glycopeptidepy/_c/parser.c:1085: note: this is the location of the previous definition 2023-09-18T22:25:25,161 1085 | #define PyInt_Check(op) PyLong_Check(op) 2023-09-18T22:25:25,161 | 2023-09-18T22:25:25,162 glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2023-09-18T22:25:25,162 39 | #define PyInt_CheckExact PyLong_CheckExact 2023-09-18T22:25:25,163 | 2023-09-18T22:25:25,163 glycopeptidepy/_c/parser.c:1086: note: this is the location of the previous definition 2023-09-18T22:25:25,164 1086 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2023-09-18T22:25:25,164 | 2023-09-18T22:25:25,178 glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser__cstring_sequence_tokenizer’: 2023-09-18T22:25:25,180 glycopeptidepy/_c/parser.c:3603:21: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T22:25:25,181 3603 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2023-09-18T22:25:25,182 | ^ 2023-09-18T22:25:25,250 glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser_parse_simple’: 2023-09-18T22:25:25,256 glycopeptidepy/_c/parser.c:7712:23: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T22:25:25,257 7712 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2023-09-18T22:25:25,258 | ^ 2023-09-18T22:25:32,680 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so 2023-09-18T22:25:32,793 building 'glycopeptidepy._c.structure.base' extension 2023-09-18T22:25:32,794 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-18T22:25:32,794 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/base.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.o 2023-09-18T22:25:54,211 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so 2023-09-18T22:25:54,352 building 'glycopeptidepy._c.structure.fragment' extension 2023-09-18T22:25:54,353 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iglycopeptidepy/_c -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/fragment.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.o 2023-09-18T22:25:54,722 In file included from glycopeptidepy/_c/structure/fragment.c:1188: 2023-09-18T22:25:54,723 glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2023-09-18T22:25:54,724 38 | #define PyInt_Check PyLong_Check 2023-09-18T22:25:54,724 | 2023-09-18T22:25:54,725 glycopeptidepy/_c/structure/fragment.c:1085: note: this is the location of the previous definition 2023-09-18T22:25:54,725 1085 | #define PyInt_Check(op) PyLong_Check(op) 2023-09-18T22:25:54,726 | 2023-09-18T22:25:54,726 glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2023-09-18T22:25:54,727 39 | #define PyInt_CheckExact PyLong_CheckExact 2023-09-18T22:25:54,727 | 2023-09-18T22:25:54,728 glycopeptidepy/_c/structure/fragment.c:1086: note: this is the location of the previous definition 2023-09-18T22:25:54,728 1086 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2023-09-18T22:25:54,729 | 2023-09-18T22:25:54,769 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_init_str_ints’: 2023-09-18T22:25:54,774 glycopeptidepy/_c/structure/fragment.c:5798:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T22:25:54,775 5798 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2023-09-18T22:25:54,775 | ^ 2023-09-18T22:25:54,777 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_get_str_int’: 2023-09-18T22:25:54,782 glycopeptidepy/_c/structure/fragment.c:6027:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T22:25:54,782 6027 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2023-09-18T22:25:54,783 | ^ 2023-09-18T22:25:55,023 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_15PeptideFragment_get_fragment_name’: 2023-09-18T22:25:55,035 glycopeptidepy/_c/structure/fragment.c:14261:22: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T22:25:55,036 14261 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-18T22:25:55,037 | ^ 2023-09-18T22:25:55,054 glycopeptidepy/_c/structure/fragment.c:14576:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T22:25:55,055 14576 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-18T22:25:55,056 | ^ 2023-09-18T22:25:55,069 glycopeptidepy/_c/structure/fragment.c:14749:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T22:25:55,069 14749 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-18T22:25:55,070 | ^ 2023-09-18T22:25:55,083 glycopeptidepy/_c/structure/fragment.c:14926:24: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-18T22:25:55,084 14926 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-18T22:25:55,085 | ^ 2023-09-18T22:26:32,028 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so 2023-09-18T22:26:32,204 building 'glycopeptidepy._c.structure.constants' extension 2023-09-18T22:26:32,205 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/constants.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.o 2023-09-18T22:26:38,215 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so 2023-09-18T22:26:38,321 building 'glycopeptidepy._c.structure.glycan' extension 2023-09-18T22:26:38,322 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/glycan.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.o 2023-09-18T22:27:01,202 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so 2023-09-18T22:27:01,366 building 'glycopeptidepy._c.structure.sequence_methods' extension 2023-09-18T22:27:01,367 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/sequence_methods.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.o 2023-09-18T22:27:02,024 glycopeptidepy/_c/structure/sequence_methods.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_16sequence_methods_add_modification’: 2023-09-18T22:27:02,038 glycopeptidepy/_c/structure/sequence_methods.c:14874:36: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-18T22:27:02,038 14874 | __pyx_t_7 = (__pyx_v_position_ >= __pyx_t_8); 2023-09-18T22:27:02,039 | ^~ 2023-09-18T22:27:22,180 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so 2023-09-18T22:27:22,313 building 'glycopeptidepy._c.structure.modification.rule' extension 2023-09-18T22:27:22,313 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-18T22:27:22,314 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/modification/rule.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.o 2023-09-18T22:27:34,751 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so 2023-09-18T22:27:34,872 building 'glycopeptidepy._c.structure.modification.modification' extension 2023-09-18T22:27:34,873 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/modification/modification.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.o 2023-09-18T22:27:42,866 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so 2023-09-18T22:27:42,978 building 'glycopeptidepy._c.structure.modification.source' extension 2023-09-18T22:27:42,979 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/modification/source.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.o 2023-09-18T22:27:50,970 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so 2023-09-18T22:27:51,082 building 'glycopeptidepy._c.structure.fragmentation_strategy.base' extension 2023-09-18T22:27:51,083 creating build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:27:51,083 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/fragmentation_strategy/base.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.o 2023-09-18T22:28:00,154 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so 2023-09-18T22:28:00,272 building 'glycopeptidepy._c.structure.fragmentation_strategy.peptide' extension 2023-09-18T22:28:00,272 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o 2023-09-18T22:28:32,283 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so 2023-09-18T22:28:32,434 building 'glycopeptidepy._c.structure.fragmentation_strategy.glycan' extension 2023-09-18T22:28:32,434 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o 2023-09-18T22:28:33,066 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_fucosylate_extended’: 2023-09-18T22:28:33,078 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:12964:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2023-09-18T22:28:33,079 12964 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-09-18T22:28:33,079 | ^ 2023-09-18T22:28:33,091 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:12981:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2023-09-18T22:28:33,091 12981 | for (__pyx_t_9 = 1; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-09-18T22:28:33,092 | ^ 2023-09-18T22:28:33,228 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_n_glycan_stub_fragments’: 2023-09-18T22:28:33,244 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17284:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-18T22:28:33,245 17284 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-09-18T22:28:33,245 | ^ 2023-09-18T22:28:33,265 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_o_glycan_stub_fragments’: 2023-09-18T22:28:33,282 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17967:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-09-18T22:28:33,283 17967 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_15; __pyx_t_9+=1) { 2023-09-18T22:28:33,284 | ^ 2023-09-18T22:28:33,341 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_gag_linker_stub_fragments’: 2023-09-18T22:28:33,359 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:19885:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-09-18T22:28:33,360 19885 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_15; __pyx_t_9+=1) { 2023-09-18T22:28:33,361 | ^ 2023-09-18T22:28:33,413 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_mixed_stub_fragments’: 2023-09-18T22:28:33,433 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:21214:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-18T22:28:33,434 21214 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-09-18T22:28:33,434 | ^ 2023-09-18T22:28:33,455 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:21273:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-18T22:28:33,455 21273 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-09-18T22:28:33,456 | ^ 2023-09-18T22:28:33,476 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:21332:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-18T22:28:33,477 21332 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-09-18T22:28:33,478 | ^ 2023-09-18T22:29:06,059 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so 2023-09-18T22:29:06,209 building 'glycopeptidepy._c.algorithm' extension 2023-09-18T22:29:06,210 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c glycopeptidepy/_c/algorithm.c -o build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.o 2023-09-18T22:29:20,479 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so 2023-09-18T22:29:20,627 installing to build/bdist.linux-armv7l/wheel 2023-09-18T22:29:20,628 running install 2023-09-18T22:29:20,651 running install_lib 2023-09-18T22:29:20,659 creating build/bdist.linux-armv7l 2023-09-18T22:29:20,659 creating build/bdist.linux-armv7l/wheel 2023-09-18T22:29:20,661 creating build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T22:29:20,662 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T22:29:20,663 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/mzid.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T22:29:20,666 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T22:29:20,669 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T22:29:20,670 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T22:29:20,672 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/annotation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T22:29:20,675 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T22:29:20,676 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T22:29:20,678 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T22:29:20,681 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/term.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T22:29:20,685 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/peff.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-18T22:29:20,689 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/nextprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T22:29:20,691 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-18T22:29:20,694 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T22:29:20,695 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/collectiontools.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T22:29:20,697 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/sequence_tree.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T22:29:20,701 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T22:29:20,703 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/iterators.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T22:29:20,705 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T22:29:20,707 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/memoize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-18T22:29:20,709 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/algorithm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T22:29:20,713 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T22:29:20,716 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T22:29:20,717 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/terminal_group.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T22:29:20,719 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T22:29:20,720 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T22:29:20,723 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T22:29:20,724 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T22:29:20,725 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T22:29:20,727 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T22:29:20,731 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-18T22:29:20,734 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/parser.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T22:29:20,736 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T22:29:20,738 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T22:29:20,740 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T22:29:20,742 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T22:29:20,743 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/rule.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T22:29:20,746 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/source.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T22:29:20,748 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T22:29:20,750 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T22:29:20,752 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T22:29:20,754 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/descriptors.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T22:29:20,756 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/target.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T22:29:20,758 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/glycosylation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-18T22:29:20,761 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T22:29:20,762 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T22:29:20,764 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T22:29:20,766 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T22:29:20,768 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T22:29:20,769 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/unimod.json -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-18T22:29:20,797 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T22:29:20,798 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/implementation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T22:29:20,801 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T22:29:20,803 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T22:29:20,805 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T22:29:20,807 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-18T22:29:20,810 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T22:29:20,813 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/constants.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T22:29:20,815 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-18T22:29:20,818 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:20,819 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:20,837 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/compat.h -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:20,839 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:20,863 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:20,865 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:20,867 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:20,879 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:20,881 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:20,882 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:20,889 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:20,891 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:20,911 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:20,920 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:20,942 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:20,944 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:20,946 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:20,948 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:20,969 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:20,971 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:20,996 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:29:20,997 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:29:20,999 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:29:21,025 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:29:21,036 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:29:21,037 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:29:21,039 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:29:21,047 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:29:21,068 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:29:21,070 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:29:21,072 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:29:21,096 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:29:21,125 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:29:21,127 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-18T22:29:21,130 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:21,160 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:21,162 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:21,185 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T22:29:21,186 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T22:29:21,188 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T22:29:21,189 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T22:29:21,191 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T22:29:21,202 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T22:29:21,204 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T22:29:21,206 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T22:29:21,215 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T22:29:21,217 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T22:29:21,227 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T22:29:21,229 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/target.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T22:29:21,231 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T22:29:21,244 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T22:29:21,258 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-18T22:29:21,268 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:21,270 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:21,272 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:21,274 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:21,293 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:21,324 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:21,326 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-18T22:29:21,329 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/compat.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:21,330 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:21,337 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:21,345 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:21,347 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:21,350 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:21,352 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:21,354 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:21,373 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:21,383 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/cythonize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:21,385 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:21,395 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-18T22:29:21,397 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T22:29:21,399 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/version.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-18T22:29:21,402 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T22:29:21,403 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T22:29:21,405 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T22:29:21,406 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T22:29:21,409 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T22:29:21,410 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T22:29:21,412 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T22:29:21,414 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T22:29:21,416 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T22:29:21,418 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_fragmentation_strategy.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T22:29:21,420 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T22:29:21,422 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T22:29:21,424 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T22:29:21,426 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/common.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T22:29:21,428 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/test_algorithms.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-18T22:29:21,430 running install_egg_info 2023-09-18T22:29:21,442 Copying glycopeptidepy.egg-info to build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.19-py3.11.egg-info 2023-09-18T22:29:21,454 running install_scripts 2023-09-18T22:29:21,501 creating build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.19.dist-info/WHEEL 2023-09-18T22:29:21,504 creating '/tmp/pip-wheel-jmrkni2d/.tmp-uf4eaplt/glycopeptidepy-0.0.19-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-18T22:29:21,506 adding 'glycopeptidepy/__init__.py' 2023-09-18T22:29:21,509 adding 'glycopeptidepy/algorithm.py' 2023-09-18T22:29:21,511 adding 'glycopeptidepy/enzyme.py' 2023-09-18T22:29:21,513 adding 'glycopeptidepy/version.py' 2023-09-18T22:29:21,514 adding 'glycopeptidepy/_c/__init__.py' 2023-09-18T22:29:21,570 adding 'glycopeptidepy/_c/algorithm.c' 2023-09-18T22:29:21,722 adding 'glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T22:29:21,729 adding 'glycopeptidepy/_c/algorithm.pyx' 2023-09-18T22:29:21,768 adding 'glycopeptidepy/_c/collectiontools.c' 2023-09-18T22:29:21,845 adding 'glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T22:29:21,849 adding 'glycopeptidepy/_c/collectiontools.pxd' 2023-09-18T22:29:21,850 adding 'glycopeptidepy/_c/collectiontools.pyx' 2023-09-18T22:29:21,852 adding 'glycopeptidepy/_c/compat.h' 2023-09-18T22:29:21,853 adding 'glycopeptidepy/_c/compat.pxd' 2023-09-18T22:29:21,919 adding 'glycopeptidepy/_c/count_table.c' 2023-09-18T22:29:22,076 adding 'glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T22:29:22,083 adding 'glycopeptidepy/_c/count_table.pxd' 2023-09-18T22:29:22,086 adding 'glycopeptidepy/_c/count_table.pyx' 2023-09-18T22:29:22,087 adding 'glycopeptidepy/_c/cythonize.py' 2023-09-18T22:29:22,130 adding 'glycopeptidepy/_c/parser.c' 2023-09-18T22:29:22,216 adding 'glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T22:29:22,220 adding 'glycopeptidepy/_c/parser.pxd' 2023-09-18T22:29:22,222 adding 'glycopeptidepy/_c/parser.pyx' 2023-09-18T22:29:22,224 adding 'glycopeptidepy/_c/structure/__init__.py' 2023-09-18T22:29:22,299 adding 'glycopeptidepy/_c/structure/base.c' 2023-09-18T22:29:22,507 adding 'glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T22:29:22,516 adding 'glycopeptidepy/_c/structure/base.pxd' 2023-09-18T22:29:22,518 adding 'glycopeptidepy/_c/structure/base.pyx' 2023-09-18T22:29:22,551 adding 'glycopeptidepy/_c/structure/constants.c' 2023-09-18T22:29:22,621 adding 'glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T22:29:22,625 adding 'glycopeptidepy/_c/structure/constants.pxd' 2023-09-18T22:29:22,626 adding 'glycopeptidepy/_c/structure/constants.pyx' 2023-09-18T22:29:22,736 adding 'glycopeptidepy/_c/structure/fragment.c' 2023-09-18T22:29:23,053 adding 'glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T22:29:23,067 adding 'glycopeptidepy/_c/structure/fragment.pxd' 2023-09-18T22:29:23,070 adding 'glycopeptidepy/_c/structure/fragment.pyx' 2023-09-18T22:29:23,144 adding 'glycopeptidepy/_c/structure/glycan.c' 2023-09-18T22:29:23,359 adding 'glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T22:29:23,369 adding 'glycopeptidepy/_c/structure/glycan.pxd' 2023-09-18T22:29:23,371 adding 'glycopeptidepy/_c/structure/glycan.pyx' 2023-09-18T22:29:23,444 adding 'glycopeptidepy/_c/structure/sequence_methods.c' 2023-09-18T22:29:23,636 adding 'glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T22:29:23,644 adding 'glycopeptidepy/_c/structure/sequence_methods.pxd' 2023-09-18T22:29:23,647 adding 'glycopeptidepy/_c/structure/sequence_methods.pyx' 2023-09-18T22:29:23,649 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py' 2023-09-18T22:29:23,691 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.c' 2023-09-18T22:29:23,779 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T22:29:23,783 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd' 2023-09-18T22:29:23,784 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx' 2023-09-18T22:29:23,891 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c' 2023-09-18T22:29:24,192 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T22:29:24,205 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd' 2023-09-18T22:29:24,209 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx' 2023-09-18T22:29:24,308 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c' 2023-09-18T22:29:24,582 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T22:29:24,594 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd' 2023-09-18T22:29:24,597 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx' 2023-09-18T22:29:24,598 adding 'glycopeptidepy/_c/structure/modification/__init__.py' 2023-09-18T22:29:24,638 adding 'glycopeptidepy/_c/structure/modification/modification.c' 2023-09-18T22:29:24,724 adding 'glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T22:29:24,729 adding 'glycopeptidepy/_c/structure/modification/modification.pxd' 2023-09-18T22:29:24,730 adding 'glycopeptidepy/_c/structure/modification/modification.pyx' 2023-09-18T22:29:24,783 adding 'glycopeptidepy/_c/structure/modification/rule.c' 2023-09-18T22:29:24,916 adding 'glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T22:29:24,922 adding 'glycopeptidepy/_c/structure/modification/rule.pxd' 2023-09-18T22:29:24,923 adding 'glycopeptidepy/_c/structure/modification/rule.pyx' 2023-09-18T22:29:24,963 adding 'glycopeptidepy/_c/structure/modification/source.c' 2023-09-18T22:29:25,050 adding 'glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so' 2023-09-18T22:29:25,055 adding 'glycopeptidepy/_c/structure/modification/source.pxd' 2023-09-18T22:29:25,056 adding 'glycopeptidepy/_c/structure/modification/source.pyx' 2023-09-18T22:29:25,057 adding 'glycopeptidepy/_c/structure/modification/target.pyx' 2023-09-18T22:29:25,059 adding 'glycopeptidepy/io/__init__.py' 2023-09-18T22:29:25,061 adding 'glycopeptidepy/io/annotation.py' 2023-09-18T22:29:25,065 adding 'glycopeptidepy/io/fasta.py' 2023-09-18T22:29:25,066 adding 'glycopeptidepy/io/mzid.py' 2023-09-18T22:29:25,067 adding 'glycopeptidepy/io/nextprot.py' 2023-09-18T22:29:25,070 adding 'glycopeptidepy/io/uniprot.py' 2023-09-18T22:29:25,072 adding 'glycopeptidepy/io/utils.py' 2023-09-18T22:29:25,073 adding 'glycopeptidepy/io/cv/__init__.py' 2023-09-18T22:29:25,075 adding 'glycopeptidepy/io/cv/peff.py' 2023-09-18T22:29:25,076 adding 'glycopeptidepy/io/cv/term.py' 2023-09-18T22:29:25,078 adding 'glycopeptidepy/io/cv/uniprot_ptm.py' 2023-09-18T22:29:25,080 adding 'glycopeptidepy/structure/__init__.py' 2023-09-18T22:29:25,081 adding 'glycopeptidepy/structure/base.py' 2023-09-18T22:29:25,082 adding 'glycopeptidepy/structure/composition.py' 2023-09-18T22:29:25,083 adding 'glycopeptidepy/structure/constants.py' 2023-09-18T22:29:25,085 adding 'glycopeptidepy/structure/fragment.py' 2023-09-18T22:29:25,088 adding 'glycopeptidepy/structure/glycan.py' 2023-09-18T22:29:25,089 adding 'glycopeptidepy/structure/parser.py' 2023-09-18T22:29:25,091 adding 'glycopeptidepy/structure/residue.py' 2023-09-18T22:29:25,093 adding 'glycopeptidepy/structure/sequence_composition.py' 2023-09-18T22:29:25,095 adding 'glycopeptidepy/structure/terminal_group.py' 2023-09-18T22:29:25,097 adding 'glycopeptidepy/structure/fragmentation_strategy/__init__.py' 2023-09-18T22:29:25,098 adding 'glycopeptidepy/structure/fragmentation_strategy/base.py' 2023-09-18T22:29:25,102 adding 'glycopeptidepy/structure/fragmentation_strategy/glycan.py' 2023-09-18T22:29:25,105 adding 'glycopeptidepy/structure/fragmentation_strategy/peptide.py' 2023-09-18T22:29:25,107 adding 'glycopeptidepy/structure/modification/__init__.py' 2023-09-18T22:29:25,108 adding 'glycopeptidepy/structure/modification/descriptors.py' 2023-09-18T22:29:25,110 adding 'glycopeptidepy/structure/modification/glycosylation.py' 2023-09-18T22:29:25,112 adding 'glycopeptidepy/structure/modification/modification.py' 2023-09-18T22:29:25,115 adding 'glycopeptidepy/structure/modification/rule.py' 2023-09-18T22:29:25,118 adding 'glycopeptidepy/structure/modification/source.py' 2023-09-18T22:29:25,119 adding 'glycopeptidepy/structure/modification/target.py' 2023-09-18T22:29:25,121 adding 'glycopeptidepy/structure/modification/utils.py' 2023-09-18T22:29:25,123 adding 'glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv' 2023-09-18T22:29:25,124 adding 'glycopeptidepy/structure/modification/data/__init__.py' 2023-09-18T22:29:25,125 adding 'glycopeptidepy/structure/modification/data/patch_unimod.py' 2023-09-18T22:29:25,190 adding 'glycopeptidepy/structure/modification/data/unimod.json' 2023-09-18T22:29:25,207 adding 'glycopeptidepy/structure/modification/data/unimod.py' 2023-09-18T22:29:25,209 adding 'glycopeptidepy/structure/sequence/__init__.py' 2023-09-18T22:29:25,211 adding 'glycopeptidepy/structure/sequence/base.py' 2023-09-18T22:29:25,213 adding 'glycopeptidepy/structure/sequence/glycosylated_sequence.py' 2023-09-18T22:29:25,215 adding 'glycopeptidepy/structure/sequence/implementation.py' 2023-09-18T22:29:25,217 adding 'glycopeptidepy/structure/sequence/mutable_sequence.py' 2023-09-18T22:29:25,218 adding 'glycopeptidepy/test/__init__.py' 2023-09-18T22:29:25,220 adding 'glycopeptidepy/test/common.py' 2023-09-18T22:29:25,221 adding 'glycopeptidepy/test/test_algorithms.py' 2023-09-18T22:29:25,222 adding 'glycopeptidepy/test/test_enzyme.py' 2023-09-18T22:29:25,224 adding 'glycopeptidepy/test/test_fasta.py' 2023-09-18T22:29:25,225 adding 'glycopeptidepy/test/test_fragment.py' 2023-09-18T22:29:25,227 adding 'glycopeptidepy/test/test_fragmentation_strategy.py' 2023-09-18T22:29:25,228 adding 'glycopeptidepy/test/test_intervals.py' 2023-09-18T22:29:25,230 adding 'glycopeptidepy/test/test_modification.py' 2023-09-18T22:29:25,231 adding 'glycopeptidepy/test/test_residue.py' 2023-09-18T22:29:25,233 adding 'glycopeptidepy/test/test_sequence.py' 2023-09-18T22:29:25,234 adding 'glycopeptidepy/test/test_sequence_composition.py' 2023-09-18T22:29:25,235 adding 'glycopeptidepy/test/test_uniprot.py' 2023-09-18T22:29:25,236 adding 'glycopeptidepy/test/test_utils.py' 2023-09-18T22:29:25,239 adding 'glycopeptidepy/utils/__init__.py' 2023-09-18T22:29:25,240 adding 'glycopeptidepy/utils/collectiontools.py' 2023-09-18T22:29:25,242 adding 'glycopeptidepy/utils/intervals.py' 2023-09-18T22:29:25,244 adding 'glycopeptidepy/utils/iterators.py' 2023-09-18T22:29:25,245 adding 'glycopeptidepy/utils/memoize.py' 2023-09-18T22:29:25,246 adding 'glycopeptidepy/utils/sequence_tree.py' 2023-09-18T22:29:25,248 adding 'glycopeptidepy-0.0.19.dist-info/METADATA' 2023-09-18T22:29:25,249 adding 'glycopeptidepy-0.0.19.dist-info/WHEEL' 2023-09-18T22:29:25,250 adding 'glycopeptidepy-0.0.19.dist-info/top_level.txt' 2023-09-18T22:29:25,253 adding 'glycopeptidepy-0.0.19.dist-info/RECORD' 2023-09-18T22:29:25,322 removing build/bdist.linux-armv7l/wheel 2023-09-18T22:29:25,516 Building wheel for glycopeptidepy (pyproject.toml): finished with status 'done' 2023-09-18T22:29:25,685 Created wheel for glycopeptidepy: filename=glycopeptidepy-0.0.19-cp311-cp311-linux_armv7l.whl size=6356811 sha256=a685c1f12c8ca5d03be65fef8a5c11d02eb750e06aa668924a165387d5a682e1 2023-09-18T22:29:25,687 Stored in directory: /tmp/pip-ephem-wheel-cache-f4zoaozx/wheels/38/73/bc/c295098caf460585fd7108211a60972ea585ab628c69e80ce8 2023-09-18T22:29:25,701 Successfully built glycopeptidepy 2023-09-18T22:29:25,846 Removed build tracker: '/tmp/pip-build-tracker-3sgdols2'