2023-09-19T00:42:02,148 Created temporary directory: /tmp/pip-build-tracker-p1ldwojv 2023-09-19T00:42:02,149 Initialized build tracking at /tmp/pip-build-tracker-p1ldwojv 2023-09-19T00:42:02,149 Created build tracker: /tmp/pip-build-tracker-p1ldwojv 2023-09-19T00:42:02,150 Entered build tracker: /tmp/pip-build-tracker-p1ldwojv 2023-09-19T00:42:02,151 Created temporary directory: /tmp/pip-wheel-d5lt2k56 2023-09-19T00:42:02,154 Created temporary directory: /tmp/pip-ephem-wheel-cache-29acqi8y 2023-09-19T00:42:02,175 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-19T00:42:02,179 2 location(s) to search for versions of pyhmmer: 2023-09-19T00:42:02,179 * https://pypi.org/simple/pyhmmer/ 2023-09-19T00:42:02,179 * https://www.piwheels.org/simple/pyhmmer/ 2023-09-19T00:42:02,179 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmer/ 2023-09-19T00:42:02,180 Getting page https://pypi.org/simple/pyhmmer/ 2023-09-19T00:42:02,182 Found index url https://pypi.org/simple/ 2023-09-19T00:42:02,606 Fetched page https://pypi.org/simple/pyhmmer/ as application/vnd.pypi.simple.v1+json 2023-09-19T00:42:02,780 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/79/24/b9adc93653b83e3aa333588f8fe80cf6a058b97497a1a722e7a2cf5bc5b3/pyhmmer-0.1.0a1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-09-19T00:42:02,781 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/5a/594c4415860394f14b94137e10f3b6264fbd452a9ed00371fef870bdd68e/pyhmmer-0.1.0a1-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-09-19T00:42:02,782 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2f/fe/4cf2fc8c5eb288fc72cbbc151d6da1b6f6e73fcba66842ed40532069902d/pyhmmer-0.1.0a1-cp36-cp36m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-09-19T00:42:02,782 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dd/c9/3f46d702c63e188539c28555af361e58ead4bff416799042c5ecf97805cb/pyhmmer-0.1.0a1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-09-19T00:42:02,783 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/76/12/f5d1ef8114cc5e0ab890d562768e9a6eb253b3e3bf258f8105c1d1841c73/pyhmmer-0.1.0a1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-09-19T00:42:02,784 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/b6/b92f44fcc712bc3dd621eccefe34d569a17f0ae73133f352a47fb2029c44/pyhmmer-0.1.0a1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-09-19T00:42:02,784 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/b6/0ca49ee6803d761eefc93528e9e8106151e06acf77ba9f669275c01863ac/pyhmmer-0.1.0a1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-09-19T00:42:02,785 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/0d/e2e21b3925af6887baf35a3e8993b5fe4863d93638138e7d5f236bcf2197/pyhmmer-0.1.0a1-cp38-cp38-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-09-19T00:42:02,785 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/56/3d/aac55b3f74ecd81ff3f619083c277ba40df45d8e6b8fc19d58eb74fab09b/pyhmmer-0.1.0a1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-09-19T00:42:02,786 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/56/cc/11cb714fad98ed3c1689ce83a31a29d744ed34c822af3ae63b2450e6b159/pyhmmer-0.1.0a1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-09-19T00:42:02,787 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/39/ca6e515c639a28632e52579a75aabe22d6bf2fe2a66cb2bd407fea81a1fe/pyhmmer-0.1.0a1-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-09-19T00:42:02,787 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/21/bb677b42abb107adf96a8e305659779332f1faece8c3c8b8227d6c447714/pyhmmer-0.1.0a1-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-09-19T00:42:02,788 Found link https://files.pythonhosted.org/packages/9d/52/5dfdc7b0b49d72f6975c789255f785fb5adaed4d316dea2c1fd5752e3671/pyhmmer-0.1.0a1.tar.gz (from https://pypi.org/simple/pyhmmer/), version: 0.1.0a1 2023-09-19T00:42:02,789 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/5a/94c8ad40e16bd1b238703a8815bd68d90b0559ac8cbaa7a027d2a886978b/pyhmmer-0.1.0a2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,789 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/a8/b31471655d0f09813748c9d8888587e3a1e1573f0c01c748676d03cc3c51/pyhmmer-0.1.0a2-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,790 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/da/1f/4b3aef73b2a9d4e07d56700a1a11794e6c92dd9018c1008b53e6c0e903ca/pyhmmer-0.1.0a2-cp36-cp36m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,790 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cf/83/a386d9e2350ec96fe9d0c6d8c274c72afda82745e5586926966b0c8e678f/pyhmmer-0.1.0a2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,791 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d0/24/aaa2a74692ac30b32f7da206479021eb206ea6e7dbb7023ad8bae97db1a4/pyhmmer-0.1.0a2-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,791 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/4a/d1cba5443443544a77b200f47f2ba3ab679ef974bbf51dbfefde401902f0/pyhmmer-0.1.0a2-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,792 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d2/bf/a7d9c65a9c2660474ad72338ca47427f6f78e6ad378026edf2fdce3019f2/pyhmmer-0.1.0a2-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,792 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a8/f7/10d886b6e03cdf16a6123dc48687cf1aaa025ac2b17d902bce75d4785ea4/pyhmmer-0.1.0a2-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,793 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0c/54/8b3c37d0732fedc623776c24f703a10b069436039abc2cbbed14eff2d665/pyhmmer-0.1.0a2-cp38-cp38-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,794 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ef/4d/86ff1e09e523b7d38d5d88d507f4131d4e20348855bb73603693355baf99/pyhmmer-0.1.0a2-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,794 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/d7/a10594b0c3bac79e2526c5659789b38cd98675cf8bc600c7c386482f40ad/pyhmmer-0.1.0a2-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,795 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/f8/e76e388294f53736440bf078f3e6d407625ab53077c8da0a80c776aaf5de/pyhmmer-0.1.0a2-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,795 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/94/945c8e50db0e658ccbda8abb26a0becd29e414bbfc9a2aa0a07329ac86b4/pyhmmer-0.1.0a2-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,797 Found link https://files.pythonhosted.org/packages/a9/d8/7d1a3e189d29f5f57cfc2b5706e46d9c593228316d88d9791e4b6deaf818/pyhmmer-0.1.0a2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5), version: 0.1.0a2 2023-09-19T00:42:02,797 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/67/dd/ffe938b4db1f8230060a11a725500da00678d2431552685541e49f56a1cd/pyhmmer-0.1.0a3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,798 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/0e/8634c98e9bb007edb4d9b0504cd2325f0db0303124c2285405f422d48d60/pyhmmer-0.1.0a3-cp35-cp35m-manylinux2010_x86_64.whl 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binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/82/43/7dd16f4ba5889baf5948f420bfb0333b10f00b247b7dc346eb1f564951e9/pyhmmer-0.1.0a3-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,800 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/42/e3/1ae53fd316b2f4d952c9cc566068781a0e0bd676e741f328ae2c902d1490/pyhmmer-0.1.0a3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,801 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/ee/8fa3f99cb062863c91e73654f21024373cae0187e5e3476275c1cf9d06f5/pyhmmer-0.1.0a3-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,801 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8c/67/4cb6f3ff89e47e060598f940d771799fdd7b1427544cd8da94ce895e9e4f/pyhmmer-0.1.0a3-cp38-cp38-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,802 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9a/61/e5f4b60a3ea29110b78672a95dac9bc165727c96732e34868f249e3422e1/pyhmmer-0.1.0a3-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,803 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/37/df/8c9ccb8baeec522b05e956beaf899596ada02a3b383dc7a8d259b69e825b/pyhmmer-0.1.0a3-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,803 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5f/78/7cd9016de0f1aa1ee2da0200224cb886959e62cb97c933553cdc7fd2560f/pyhmmer-0.1.0a3-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,804 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/2a/abf43d38a2414b719e57bf5c5edb0803179f6d0e6a16fc2eed28cc77b6f5/pyhmmer-0.1.0a3-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,805 Found link https://files.pythonhosted.org/packages/54/29/75df6ece9030041c44fff57220bf48950d4c653ddca7e02a54d4d5fc21cc/pyhmmer-0.1.0a3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5), version: 0.1.0a3 2023-09-19T00:42:02,806 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/0b/15f39d875ef0cbadfd3b069916f632409989918429ec2604eec53cd7e448/pyhmmer-0.1.0a4-cp35-cp35m-manylinux1_x86_64.whl 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binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/67/90/3f2cc3b8d0d2400b4cb21655f124b1704f0b71b05a0680f6671b19ec566c/pyhmmer-0.1.0a4-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,808 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c2/da/bc625da5fac25a825470749a1a0465f15cceb4c702cb9efd8b69e76de5e7/pyhmmer-0.1.0a4-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,809 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4c/35/22c6cb71edfcb82ef9d649d3adb11574f1f1ec930491242295c3916e7572/pyhmmer-0.1.0a4-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-09-19T00:42:02,809 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/9b/00/3a84465ed08c531aa7fafc575f16840c94a75bba9ab4cd2b46e906f0431e/pyhmmer-0.3.1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.3.1 2023-09-19T00:42:02,897 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/19/9d179de61801cf015e36b58915320bc456482b86001c9e5de25cf56f7e69/pyhmmer-0.4.0-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,897 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0f/05/7fb226eb9c2131dd60bd56f0077e006a4e51da51272d92163b62ca4f8eea/pyhmmer-0.4.0-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,898 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/a9/bd/08e876d81d61cd14279d7cc453060e38df9c59282b389c2789bd7742813b/pyhmmer-0.4.1-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,909 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/84/f5/5f83239790be66db9ea89781295020172d20ccc6d1262f4064dc2c1170cb/pyhmmer-0.4.1-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,910 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/35/55/bd514b80616381411b763ae1a275d384bb2261abc06f8b32e95dedf7aa37/pyhmmer-0.4.1-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,910 Skipping link: No binaries 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https://files.pythonhosted.org/packages/ba/48/a36c888751b3dd9eb63c3c1c5ed163a6d154ae00f77d18a044e3fac082d0/pyhmmer-0.4.2-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,914 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c3/5a/8a0de4d3424898a336c5c6c1d9d1de7cc9e09ec0ce0936b04e309c71b66f/pyhmmer-0.4.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,914 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cb/12/1567eade5703ae7153f55256d5f0a404a77a5d40b286e7a20379f5d96d60/pyhmmer-0.4.2-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,915 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/9c/5e/212fe49995ccad358150012abf2da8ffbc25f024436b6fdcc89173e95b32/pyhmmer-0.4.2-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,919 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/9e/486d5da6d404842d00eabfbb1d7a25ffc0c49503dd7d267f1a6a701840e5/pyhmmer-0.4.2-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,919 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/88/b8bb0c20875f4638bb7d600c4c3dc65eb742b3a9833c730aa4915e94aa9a/pyhmmer-0.4.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,920 Found link https://files.pythonhosted.org/packages/2f/93/fa15885ede25f87ac2fa5e2cef12831bb8747b7e8455982ca2942ba61c7b/pyhmmer-0.4.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.2 2023-09-19T00:42:02,921 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d9/da/5e42fc076686aab8588bafb9d3e5c97a6c8bb4b24060eb943836c303cf11/pyhmmer-0.4.3-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,922 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c9/50/caff34277134400d58687859f224f34e88a6aa7abc6b3371150c3997f7a1/pyhmmer-0.4.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,922 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c6/43/726fc37dd0ece9c81780c9e29b90be4493693f4c6e8edde68b3cf8189125/pyhmmer-0.4.3-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,923 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bf/5f/6a88535a37b4de01584d62e008fb415adbe3f1440950dabba648943aa3c1/pyhmmer-0.4.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,923 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b5/6c/ec2ff99e8dc22520805ecf43ff22369a1ca0228cbd6fabfc3de0d7695481/pyhmmer-0.4.3-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,924 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/9a/8df126ab5ccf2278e9b3414c26f53bf01b480164abcc11c9d2d56d9f67f4/pyhmmer-0.4.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,924 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2d/63/9e0ac76ca6baae6f288983a7af56de078773b5c0d61004419d1319197f61/pyhmmer-0.4.3-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,925 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c2/30/05d945cce1855035b4bb78996bac7ce0e371e2dc82b186147e36d551e1d0/pyhmmer-0.4.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,925 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/94/cacfb35c7ee944e9b9dac2ba8ef20cc192958cdbf1e4e223783152251a7b/pyhmmer-0.4.3-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,926 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ff/ba/e2347228e6bc83d22820f46bf33ed8558ce1128a60128edd2b9bd770078e/pyhmmer-0.4.3-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,926 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/9a/d5447b14a91a994bd2ec38a1a4880c29c93bce74e1aa7a328a794901a870/pyhmmer-0.4.3-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,927 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/eb/87/8074c4e8896b87ef161b2490f525315f70c4783e567cfc15679bdab1f059/pyhmmer-0.4.3-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,928 Found link https://files.pythonhosted.org/packages/4f/77/3499166ca2e4ca1b8736bebd9082787c5bb88478c98fe14970e88cdecf07/pyhmmer-0.4.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.3 2023-09-19T00:42:02,929 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6a/9b/b6aa00ca89a0f7a238d2f23a241416e7051d7ba24fe7505d1ec33c7a21e5/pyhmmer-0.4.4-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,930 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/ee/db/b387ccecb8c04aa6caa5d8ba9e2554d3e2c4e2b098b42d17c4f9369d572c/pyhmmer-0.4.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,933 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6f/02/c2ac022076a9b264f91a0f7e6b08a89934d5e1435943cb8b39304cdb7447/pyhmmer-0.4.4-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,934 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e9/d1/2c4a7021f650815ccddea11adf8506dba8590d6f1e1a82050766b963fe5e/pyhmmer-0.4.4-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,934 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/91/78/eefaf55976164ad3550c2f76c6e9c732d79b7c68e1abbbfa98646d756a86/pyhmmer-0.4.4-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,935 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/08/8f9539ba0d0e00aa7cdd16db85ffd3ee0716b515167d95efe68b11c0f583/pyhmmer-0.4.4-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,936 Found link https://files.pythonhosted.org/packages/59/cf/064c29541b6805d8ef36046f2b0764c4ba246e887a2e263226359bc2776f/pyhmmer-0.4.4.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.4 2023-09-19T00:42:02,937 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/ad/76b4338792226f636651db9e66611a539847463a0f2265a571a24487fafa/pyhmmer-0.4.5-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,937 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/36/11/9211817ba7eb6aa848578017977e3ea4d42a5f2ba76a5a2c0c71d5984d6a/pyhmmer-0.4.5-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,938 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/a6/ee5ca7c4a3dcf82cf0f0dd5418c9fddad82149867352332d1feed8528cec/pyhmmer-0.4.5-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,938 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8e/ab/aaf80ebbba238a42a3f37e794ee56fad608ef5c5880dc5701d044d5720fb/pyhmmer-0.4.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,939 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/ff/75b42f302eaf3eae6f87dae0023a54f5bb0c869613ce730bbb064afe57d8/pyhmmer-0.4.5-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,939 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8a/3c/c22f961311a96364b2fc84ebcd25ee75ce9111f27c9eaf48c1faeeafe8c7/pyhmmer-0.4.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,940 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e5/94/33f25a0d8f7761ac55acd5839c50078efe810b1e1ae0006113ca92c58d90/pyhmmer-0.4.5-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,940 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/db/a3/c5f8dd1e931959d9c38df19fc937c6cf8568174e30ea2c2a86849cbd4b01/pyhmmer-0.4.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,941 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1e/36/0407821105d77948e7d703ee4aeacd2cead5cf317179db06508f7cdf7ce3/pyhmmer-0.4.5-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,941 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/11/86/9beee426a65a90eca53de4f3b0116b562bcbcf6eadf403ec83ae1b312a13/pyhmmer-0.4.5-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,942 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3b/2d/e2a6dddd83bb0e389b0fc62449badff092ac664046c82ed718b5102b08f4/pyhmmer-0.4.5-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,943 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/9e/c179587a659325aa519390efba2fe7775178a111888fe32ba0978fd91205/pyhmmer-0.4.5-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,944 Found link https://files.pythonhosted.org/packages/c3/4c/926f71ac0913fbe2426f5f3ac8071edb4e700591b690c4acbaa7b559fb38/pyhmmer-0.4.5.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.5 2023-09-19T00:42:02,944 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/af/85534ee68bcdcb07d92d7630536659edaf435f0e7f8784189c53af637228/pyhmmer-0.4.6-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,945 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/03/d3/691d493cfc4d37f8f099ec52179d86fffaed4c9e3a6b9d76f6a3b5cf0e27/pyhmmer-0.4.6-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,946 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/f0/343198b3cebda51800efd71bc6001f5754a69c364da0f5571a5c4e91965d/pyhmmer-0.4.6-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,946 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ed/2e/efbfaaabf781ffd21b425c7cbe4dca8215c22388213aeec10b953c320cc3/pyhmmer-0.4.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,947 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6e/bc/1a349bbc9da921811a3c5f385dcb25819223672145a033539eb8acfa762e/pyhmmer-0.4.6-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,947 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/b6/432a099063555660c698ddf22c27a9f0e253ea7bf0b357dbcf9deb53f552/pyhmmer-0.4.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,948 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/61/57/9941d06a569a34685928406e5b5d47819417a2379a26233437ca53a3484e/pyhmmer-0.4.6-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,948 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3f/87/171796b7139a8a44ba960344487f474d65bb5f16c21a088bede3d3cdec33/pyhmmer-0.4.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,949 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d0/b0/5d0f1b002f50fc531485e8691224de277d329d293bde922a35f4659e73b8/pyhmmer-0.4.6-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,950 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5e/44/cc860850904897b27fcb884a05986159a1ea08e238150aedba27f5c2a8ab/pyhmmer-0.4.6-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,950 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ce/14/ced57dff0f434c8fe2d84ed1f74b33d0dcc8b8dfd3b3a9ae9aa59f3d601f/pyhmmer-0.4.6-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,951 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/80/ef4da6ee20a7937f2a3e3c58bf45519a91890feda2461bc18f353ce70fee/pyhmmer-0.4.6-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,952 Found link https://files.pythonhosted.org/packages/bd/5f/6e0db077ed2e1073b9fe7c4b18df5774bb86c2aa27f191713cd3f3aab53c/pyhmmer-0.4.6.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.6 2023-09-19T00:42:02,952 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/26/20/dc39dffff630017b87930177ac6c5e7d8621d57feca523d60c631609cb49/pyhmmer-0.4.7-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,953 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fa/f4/eccba2715b5b099cee52cddda59b3e5f8344071045f7c0c4567d3a3e32d7/pyhmmer-0.4.7-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,954 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/fc/d9b9efcc7b21381a3fa0c4b83e083c9d0b406868846054b989d105c301c8/pyhmmer-0.4.7-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,954 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d8/6f/d70ebea12581688dbcf180b983186e3d3a8ad2325cc8691c837276bb3e67/pyhmmer-0.4.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,954 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/ed/45/d5bc13839408fcd2026afeef68619db2ea343d3a9add651214c37fde69b4/pyhmmer-0.4.7-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,958 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d9/04/036c8ea00e8388dba6b116f4914df1065d7856f786d5c6458a1bd1ec6576/pyhmmer-0.4.7-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,959 Found link https://files.pythonhosted.org/packages/f1/eb/1328eb9c4ca58a684b9b210a51636a5294e6f6019675b0181c8a9c567ea3/pyhmmer-0.4.7.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.7 2023-09-19T00:42:02,960 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/60/97c5cfc22bf1d26475087e45455641599ca1e2910e670d9c72604508aee2/pyhmmer-0.4.8-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,961 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5c/35/02845b5af76b67f8a7d0703f049793aba99d5323cc05851c7dfd32e59145/pyhmmer-0.4.8-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,962 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d2/5d/bd3895ebf5d0c21e5576e046cb295b3832174b93cdd7affa2c965eb72002/pyhmmer-0.4.8-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,962 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/62/ec/918058530f70ad9b58ec9dc1638115362f59cfb9f5ad584732fe290b8dbb/pyhmmer-0.4.8-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,964 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5b/42/4a8ec9fdb0e57cddff194646e62360e73f6a57a3d339095df6572af0f935/pyhmmer-0.4.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,965 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/68/8c577f9574bed3ac3017a76bf487b76b80c784163a9ddf15e14db3a84adc/pyhmmer-0.4.8-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,965 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/57/b2ed0c64308941872e2535eceeafb737b4871e507d54b5d68b6ffc02f8cd/pyhmmer-0.4.8-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,966 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/40/22/099da301d77a3f512bde56a54fa5272e937818843f8be96aa46089071f4f/pyhmmer-0.4.8-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,966 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/76/477e37aee671104bb5d1022eb0ff641ce700d639a36961694ba9710af8b9/pyhmmer-0.4.8-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,967 Found link https://files.pythonhosted.org/packages/5a/91/1166980fd7eb5106ef2f34ede5ae0043daf2f276f05b0e9f93cc2d968827/pyhmmer-0.4.8.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.8 2023-09-19T00:42:02,968 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/97/4247b2ab3b52d8ab9d4fda6619c93d428c4e364ebea041e93b7236ade4a6/pyhmmer-0.4.9-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,969 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/7e/b349dc728eb72f78b0ac0b1cc9a7530000740584fcebadda7b93d0f13a0d/pyhmmer-0.4.9-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,969 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/50/0d/6a818b85e852443ac1fa4ede30e18d5d4a4b3c04616f84a48f5cb5d2f664/pyhmmer-0.4.9-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,970 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9a/07/442980e0fc7b4d336157fd80d843b3ad0b71709087b0daf910f2beee93cd/pyhmmer-0.4.9-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,970 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1a/41/f5b4ffcedcf3116573ff5740de4877723f0d69b7527ece4a794069de2235/pyhmmer-0.4.9-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,971 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/78/a6/d21ba62d70e38f7b3829c69be9179cea416599a8ee952c8f4ac5503bfd04/pyhmmer-0.4.9-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,971 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/49/53/6428ce4322f6af35747f3f7c3829ebaeb05bab2eae6d5ff39c46cb1455e2/pyhmmer-0.4.9-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,972 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/00/b0/8daba4b0c9507fac1725a9005e88e8560b66e15d1d29a422980ae2caf987/pyhmmer-0.4.9-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,972 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/de/1d/76c728871c542de627e56683ecd2768bad8019744f575bdfe037fbf7889a/pyhmmer-0.4.9-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,973 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dc/c9/cf8188802659d5a599e884c8f9329498069ed3eb8bbe8f9de0152f825dac/pyhmmer-0.4.9-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,973 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/ab/362d371895cdd48c56963d052e8540b1d1c2261bf7dcd0acced3c6f1b10e/pyhmmer-0.4.9-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,974 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d7/44/e509d304b066af1563b6fd16c3535edd2c556f2f2ae9d8d3a00b85a7550b/pyhmmer-0.4.9-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,975 Found link https://files.pythonhosted.org/packages/8b/25/0adc73af00203eb49a7254b26129b5c0cfd6acbe398f18dbdab67b24c638/pyhmmer-0.4.9.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.9 2023-09-19T00:42:02,976 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/6b/41a4a5002c8f5b4ad25080ea07631927aee72b11b316652528f856281f9d/pyhmmer-0.4.10-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,976 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/b0/e5f3122d4d7a7e8688f726e8ed313982cac77c095554f1cce97ee5fba6d8/pyhmmer-0.4.10-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,977 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7f/ac/2db59c94139155e1241fabf650a8f30b238a68d13ca40014a75aece65b74/pyhmmer-0.4.10-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,977 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/06/ad/aaeafd77e0037312873a136a3c2165a5eab10ae37f56cb60b8c6de7442b4/pyhmmer-0.4.10-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,978 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/05/87/24601e2b81fedba09b3a003fd1e4fe78c8cd252767663acd9dbc63d1784d/pyhmmer-0.4.10-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,978 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cd/6e/9ab04139587efaeeceefb0a5e10178b14c61abdf67a854fc0430b6c8af80/pyhmmer-0.4.10-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,979 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/63/e4a944ac648642739f5dd85127803e47939202e025e0a9ca9fccc100eba1/pyhmmer-0.4.10-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,980 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/b8/b5c116cef579c924383e595072bfea9c24a894ef916eaecb139cf3e274dc/pyhmmer-0.4.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,980 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/33/90/566f66a4ca8bbba8d364b5d123399c5ca76ea8050d829a397d65eabaf3ed/pyhmmer-0.4.10-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,981 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/46/ae84e7ae14e9b3e8026b796471844959fbb6f4043c1af329dee1e9f702c5/pyhmmer-0.4.10-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,981 Skipping link: No binaries permitted for 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https://files.pythonhosted.org/packages/4a/fc/4919fc4e0f15c48c060ef04908af7e4576aff4a5aef06a7fe8876496716e/pyhmmer-0.4.11-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,985 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/76/76/0ae3492a40179ac43d453b37b8a3d19bd58c3ca762013eca94aeb9592873/pyhmmer-0.4.11-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,985 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b4/dd/1f02cbf6cda0a82564cab00b63fba1904fc98be1db7c09e8eb2084b322d6/pyhmmer-0.4.11-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,986 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/3d/c2ca1d16803049f2917027ff4b05dc7b635757829f9c7288114edd73516a/pyhmmer-0.4.11-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,986 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/62/30/178be3d6c5dffe69cf886beff8302927e15d5ae2b92e9cef7f2f3fd0f43b/pyhmmer-0.4.11-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,987 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/63/9b/dc1fc0f379310382669aad49b6281cf3703f46662fc8d968b0b9ca0d7e8c/pyhmmer-0.4.11-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,987 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/a0/87/c0e6ce633d6649cae526c23260219fb911e2c3da891eb2485a5b6b8e6cb7/pyhmmer-0.4.11-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,989 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/61/d7/a415042ae43b7a13fbcd1a3295a8b8189029e7baeede92ab82ce597db36e/pyhmmer-0.4.11-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,990 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9f/5f/1fd5587437c9e6331fe7a1d85d11d1e7d71fd21e068d1f0800c30bd2d0ec/pyhmmer-0.4.11-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:02,991 Found link 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https://files.pythonhosted.org/packages/b4/6a/8a3467282158fac08ea0dc646378789abe5dfa9e77af5f25a1fb658e3a3e/pyhmmer-0.6.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,006 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/24/e5cba7b51dc391c8bc45dd7f98e61804088f8cc35346b362dedc94fae471/pyhmmer-0.6.0-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,007 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a0/ad/68a14e424200099462bd97c58fefe3b428a6522ae11b2e2b195bbbd6d15a/pyhmmer-0.6.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,007 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b5/2d/cd5b9729a37b0cdbe932461c79f74c75d17ac665f080f95633a8c275852d/pyhmmer-0.6.0-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,008 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7c/e9/3a1f5a5aa46b482a3bca632fff9cb173c91ba5f02a96a3f5c0d730660519/pyhmmer-0.6.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,009 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7b/72/119583107572a60f86e0f8578a7bf5d03928eeb3107d3e469336c5c41245/pyhmmer-0.6.0-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,009 Skipping link: No binaries 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https://files.pythonhosted.org/packages/cd/14/0c156809b9f92d3b0e7af334b0978392f15b2247c4bbb12c16d8f09a05f9/pyhmmer-0.6.1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.1 2023-09-19T00:42:03,020 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1a/58/bd0cf943e8530a77288c09068655fc165b0c0b8e92c13a504236cef318f4/pyhmmer-0.6.2-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,021 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/7e/0ae123e0917f504cd5a286eef569469a4da0bdcd9c8dd2472c95b9cd52d0/pyhmmer-0.6.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,022 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/66/b1/957e1be040cd2b5778941c9a4b8caf283e328dc4608c61b54dc4f44dd677/pyhmmer-0.6.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,024 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/25/4a/2db5464d2bb8e41bb346060fd9c3ceae2043c60af6621f04c8e49dbecae9/pyhmmer-0.6.2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,024 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/60/a0/4d7a8f68dc85cd4cf70a39afc592ab67a2e703149887dc78f4d2031a3d1c/pyhmmer-0.6.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,025 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/7c/ae/0b5f48c0b450b59edc60b80673c1c1d3a476fd0e1a67227c98bc24f5e119/pyhmmer-0.6.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,027 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/42/f72235b8fff6279f6f597c4766b42e5bf4d5f99b8952aad09262c191cb0d/pyhmmer-0.6.2-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,028 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e8/42/0642f761e61259b3c5263fe33ff1b94fa5db04f416c2bde2b620daca9b59/pyhmmer-0.6.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,028 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/b8/cc677cadee7a7014e6700c87d8ff24d33d9118b6d1564b6b2660ddb7ca17/pyhmmer-0.6.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,029 Found link https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.2 2023-09-19T00:42:03,030 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/53/70ce5950fa95a9f6c4c296f2d08ce0de8b78d66054f35746c9e38e5a7287/pyhmmer-0.6.3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,031 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/23/3d/29a3b664affa3d543bf179c4bc564028436d2d664750d07cb6747610d0bb/pyhmmer-0.6.3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,033 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/8a/c9f6d67ff2081be71d5bab224f86dc9fbba04b3a9005d98d1bd4e7abe711/pyhmmer-0.6.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,033 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/40/6efcf88705d32d27951d1d664a8cbb2d43e7b31afcd44c281b24d02f6f0d/pyhmmer-0.6.3-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,034 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/4f/5c7b8169544823f5a72bc2c6471a8f0d1f4d009ebab0ed93cef5c1e770cf/pyhmmer-0.6.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,034 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/b5/82b7212a91c29b78d1de6a8d701bc49bf33965a2f312f12892b56e66d6cf/pyhmmer-0.6.3-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,035 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e7/cd/e8865ac7b2f95a62f3f31ecc1897006d8bd88d14516a8ab91409fcb4ed0c/pyhmmer-0.6.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,036 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/2d/2fa37cb9c2b146fbcb6b616cf04750e7cb0654d9f3654426f5c34ec986a6/pyhmmer-0.6.3-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,036 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d3/8a/1f93b031bf44594726d5381ae9e701b44147707375140864becad63dc960/pyhmmer-0.6.3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,037 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/fe/6d1566d1b58a9cd0519ee81760177350e2bbba31683227a426e5485cfd61/pyhmmer-0.6.3-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,037 Skipping link: No binaries 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https://files.pythonhosted.org/packages/a7/01/2646aeb1261cb03ab15fbfb6bc902ea896e75f25e5ed38ac45be33375696/pyhmmer-0.7.0rc1-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,040 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/49/f6/375ea7dec9ec46fe919687f992bf2f8326a7f08449a94b3fa316a02d67de/pyhmmer-0.7.0rc1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,041 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1f/aa/9f76d8281d452ce142cc95cbfaeac15c76b2960949b2f5c9e12695e53cbe/pyhmmer-0.7.0rc1-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,041 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0f/68/dd15664d24aceaef5e94f961bffa45d9095d8f8499d64e78eddddd1ef7a9/pyhmmer-0.7.0rc1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,042 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e5/01/cb2f9126a8cc8a16f12651d80cad00f1c285451ba20ead2b461bb86ff5a7/pyhmmer-0.7.0rc1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,042 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7f/16/5269fa02ad5001fe304296e4de68cc3b316981363a07e0f620d034520e33/pyhmmer-0.7.0rc1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,043 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5d/b7/2c01ce15f1931c19f141bcc471ae8aec3238ee6b7ff32e62b0c6488dcf5a/pyhmmer-0.7.0rc1-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,045 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ef/dc/176eed80e4ead0ffc4fb150c48e98bba98063ad079df4dac8435448ce05b/pyhmmer-0.7.0rc1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,046 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/25/4d/ae2e1c934c3e4fc67f8869b12b1333cfe908b99299aed8ee7dc8f7eca7a2/pyhmmer-0.7.0rc1-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,047 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/49/77/4a2cfc97cb2432d41d16bb851e01360e3f6fea5579c153083220927e779c/pyhmmer-0.7.0rc2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,053 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/19/9f/c9bd67b4506ea74c87aa2170245f52a7ef31d9ab0091c1f341c6cf76fa9b/pyhmmer-0.7.0rc2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,054 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8a/03/ee7fbc006cfd40bacc68f90e34ae6c0648eeb66e63f1702c57a595f23beb/pyhmmer-0.7.0rc2-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,054 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/f6/b77002e48c526bdb1ec0bee0697ee021f31702ff7618adc1f7c8458638d8/pyhmmer-0.7.0rc2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,055 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/56/143d6ec67af6539abafac7d5ed7eda2f7dc4a22dc7ebeeb491a808a923a7/pyhmmer-0.7.0rc2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,057 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c8/35/66d385727a9178511182bfe841a12d45f7f64425fdfdd9ed0d93e6a74bb8/pyhmmer-0.7.0rc2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,057 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e4/d8/d5d5bec33f7ef7e4162e43e846cec992055d17864c098a1e55b96a34050f/pyhmmer-0.7.0rc2-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,058 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/39/c0/6a46e969f7c1f77f5cc19011827469176b0569cbee1f2ec80f5865f49ad6/pyhmmer-0.7.0rc2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,058 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1c/92/5602f15a7bbb92b08e92e4636813015754067aa97c0511ea1801852c1e66/pyhmmer-0.7.0rc2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,059 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/ff/ece5bd11cf4cc3ec6f664f0e3a111ad6dcf207d3f6ec2ad96165259a412b/pyhmmer-0.7.0rc2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,059 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/d2/b4d94b6921db1e4c69e9f41bb559d66fe18a2a098cde1e6434706e1eabc6/pyhmmer-0.7.0rc2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,060 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/55/c39dc94317204fd84d5d8bbb6aed951be0706970eb5e3998aa0a4a35f46b/pyhmmer-0.7.0rc2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,060 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f2/b9/46f7e47792b6dcd5d3330313efceea13105448ae6f6cb13af72cb60427d1/pyhmmer-0.7.0rc2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,061 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/31/df/48df1569e9c0b21ad86060b804c14fb3c91c3fa5aa95f09db8ff0e4c83e6/pyhmmer-0.7.0rc2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,062 Found link https://files.pythonhosted.org/packages/eb/b3/da26ba5e02d827e39ecbda73b5d7a7dbb805e94d3ae8829f3ce2adc8d027/pyhmmer-0.7.0rc2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc2 2023-09-19T00:42:03,063 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/91/36a44e2e838e58b36ebb192a899e6f889f112248fd08d1a877774db87a66/pyhmmer-0.7.0rc3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,064 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cf/8b/45d7eb18b457d0a36bacee35ad14a52af74c6ad5eab2901492996e9aa4b7/pyhmmer-0.7.0rc3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,064 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/75/25d2b67c70032fd8201bcead370e87316ed0531854aaf2b9f3061623fe33/pyhmmer-0.7.0rc3-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,064 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/f3/a6f3b814701a7fc0652810dcdeaaf6a60aaf90d30de21ca7c2fb873b5762/pyhmmer-0.7.0rc3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,065 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/10/f3/34c8cd78136ee6d53b229005b76e4949a99723c5b075683928676ff8a8ab/pyhmmer-0.7.0rc3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,065 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ba/8b/231ca0dbb96d64646a22c943988d7d94ffea8b77335f943ab23504493058/pyhmmer-0.7.0rc3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,066 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/ed/b906f6c410f04eecda1943c731e45a73448a98ce8ca04984bfff107b217d/pyhmmer-0.7.0rc3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,067 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/1e/19f92118d755272eba30bfa611635be0d67428d65dfc5c5ecd544e45e0ad/pyhmmer-0.7.0rc3-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,067 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ff/2c/bf48a68a87561fa1e263ca6cb00d1345794280070dd484845aa2d4cf8844/pyhmmer-0.7.0rc3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,068 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/48/67/2c8cd7621f44f1cd92ec244a9463c00c90f02a1fd5efe1be5617828055cf/pyhmmer-0.7.0rc3-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,069 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/73/a2db2e27de1d9b6006d6db695b5238e850b9431ea7c57eea6988a6664b31/pyhmmer-0.7.0rc3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,069 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/46/35/599a1e9f081d8e5daa34f62c9225012ba906ae872d426f4b74a3a9d5b4fe/pyhmmer-0.7.0rc3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,070 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0c/d7/389876620f3b9fe1feea99c9b6b482d8b1f115671c06fbaa92bda816c189/pyhmmer-0.7.0rc3-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,070 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/90/e1/dcccd398039ac13a2a23114fe29ba40a1270c0498b9c7d15dccf098d02db/pyhmmer-0.7.0rc3-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,071 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ab/22/86eaea1f4be5e5dd587f216169ba9f7a445b166b719c4fb364df45cf5eb8/pyhmmer-0.7.0rc3-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,072 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/71/e5/96ce896b08d17b9114817c947683e144e760f58bd9f48f53f5436ef25079/pyhmmer-0.7.0rc4-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,081 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/a5/aa8fc0a41d66c95b60097ed9aa5d11cd9b1be853c1ffafeca1e42f1095b6/pyhmmer-0.7.0rc4-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,081 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ba/7d/284867ffb3cd7eac7de62716e1dbb495331004766acf8f49419f0d04e103/pyhmmer-0.7.0rc4-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,082 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/0f/e0fdfe3a3872753e8205280a83f8bfb09cdd56050bfb84137627c905bdc0/pyhmmer-0.7.0rc4-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,083 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/c4/049d1b55164a4593e7d7ef55b6f0364b03a7c863f7f9d6a4730c5995dc20/pyhmmer-0.7.0rc4-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,084 Found link https://files.pythonhosted.org/packages/64/87/65526708ee20e910b253cd36a32d655e4f4ae5efa92817b9d45f6e80a5f5/pyhmmer-0.7.0rc4.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc4 2023-09-19T00:42:03,084 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/db/a8/5302df454773f5b6a9dc9c29d540b3195f8d10ea47773bf5ba2fe934c065/pyhmmer-0.7.0-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,085 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3c/74/ee460564fd2c0d9404e75649c4a5e476d962c37b018de89592f7960d1325/pyhmmer-0.7.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,085 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/36/e9/3d4b55e50c0815ec25f18e367982e588bc84033e6b8d5417671210214dc5/pyhmmer-0.7.0-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,086 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7d/64/775e2adae614da4f3481e035153058f95338913b433d82a2b295e672c753/pyhmmer-0.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,087 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e5/f9/c669b9adabe8996277e8a2bb6f08568509ea95cadfcb76121150d24b5f93/pyhmmer-0.7.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,087 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4f/54/985dcf1e22569b0904bd17b1f17e713dc94a7ab13b767c9f5d90f54daba1/pyhmmer-0.7.0-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,088 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d7/04/5277c738b8789802cf308662e7eb69535a5dc04d77088937cf749173c7e2/pyhmmer-0.7.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,088 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/46/cd/2ae79c367d9ac8df13d62cd7a7c33f8ae37c4b7084886825e616862fc7c3/pyhmmer-0.7.0-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,089 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/12/df/5d0e476aab5fa0fa99313e9f2c1d641690381724e8d691a4fe42b7734b6e/pyhmmer-0.7.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,089 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f7/af/dc4680fa932f2bf899f08438eb08bd271f2602454a0a0a8a2fede8bd2abe/pyhmmer-0.7.0-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,090 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/51/03/a89c205cef3d63d140049a204977c5903adbcc2fffcd37f903a155fa5cc8/pyhmmer-0.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,090 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/47/eeb9204615d3acf39fe7ba1f5d0209d263c747eac405ea97e3ac6428c7a9/pyhmmer-0.7.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,091 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/c8/273b776dc57d54b80741592ca6aee62fb31982f4ead0bbc1510a3d89f95e/pyhmmer-0.7.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,091 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dd/15/3005213eddd959f34442df93ebc4e44c28bb223ad9a7fa407ecc8b788e92/pyhmmer-0.7.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,092 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/e5/abea9b8c2217a67965d536d91263e89b9e1f896b54608a9e1354e6b4f38f/pyhmmer-0.7.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,093 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9e/17/03f003657c307cd45ab90e60c6ac65a72b895610952fcc41bcbb16c20013/pyhmmer-0.7.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,094 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1e/d8/f7b849eb87315778cc9a4295372bb3c5680616558edd48b4cb48a2cc1eb4/pyhmmer-0.7.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,094 Found link https://files.pythonhosted.org/packages/b4/aa/5f50a6780689a7372c851c8474fd5487b65d3df53f2a434bc5a99bc01cee/pyhmmer-0.7.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0 2023-09-19T00:42:03,095 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/9a/e8/add2c7bb63616995f729fb215fad8dc578ac8de57e469830f42878e52a32/pyhmmer-0.7.1rc1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,097 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4a/6a/b83eeb054f43e80c0cbe6877314d2a581b51252436da6a0b91fed65482d3/pyhmmer-0.7.1rc1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,098 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3a/cb/fcf2cdb81b840f0d81299dad023301851aa18832f2dfd9f35a6b502f4ccd/pyhmmer-0.7.1rc1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,098 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/2b/62/e270b0e792b85332ebbaccf137a9b3c33ff035c4be12ec3760aed67dd5da/pyhmmer-0.7.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,108 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ae/0d/f38735e35b50b639b70c9a74b58ea25614a81b0a188d89b692139001bca0/pyhmmer-0.7.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,108 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/49/2363ee3fe7995921638cfa8f2df825168c47e0bd05f24374319e6bc8fa5e/pyhmmer-0.7.1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,109 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9f/b1/88afa91956eb78f5b19f3e44fabef47e0bc8bd2028c33c2f1740a2ddf406/pyhmmer-0.7.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,110 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/a9/acec031f4435e796440521c54f78f978cf91203615c29b07c7c9697840e7/pyhmmer-0.7.1-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,110 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/65/16/57009ec67d1b33dc1bddfd40c054d0fa2ed0970c357249b81ca9b2c80ac4/pyhmmer-0.7.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,111 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5e/77/bde94d470ac47242abc0754a02a21311339c2d4fc367631d91a940946ab1/pyhmmer-0.7.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,113 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/83/d3/462aea5aca8f8169bee7b77b380d0221bb8b452e07b54967b352fc9383bd/pyhmmer-0.7.1-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,114 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/a2/173fe1c90b803e6bfef9190ece6e479552be0f8afdb606e8639d543a35df/pyhmmer-0.7.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,114 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/45/64/476e25cf2eb37d76881022a6c42c8da9e06a93b1af51fc596ede5c6d68ce/pyhmmer-0.7.1-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,115 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/22/b0/978fe1e68b3bdcfb1662358de0b11229dcb0af7b04fec6efdabe0270389a/pyhmmer-0.7.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,116 Found link https://files.pythonhosted.org/packages/08/b9/653e773ff15145759bf2b8365c88e2f5aad1f30addbb1eddbde05bde02d9/pyhmmer-0.7.1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.1 2023-09-19T00:42:03,116 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/53/8f/886997e0b208edbab94576eb4dbfcd56dcac054700f7246a15300098e210/pyhmmer-0.7.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,119 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ab/20/82e0a7504688cabb764417b4d141b0bb96f86632b8e499773e0dd391c9e3/pyhmmer-0.7.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,119 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8d/d5/e46bec7d9e8c5e242f7f6c3286f8af3bc2ae4bf9ea42d91e1f8d426b7561/pyhmmer-0.7.2-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,120 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c8/dc/9356b86de2f272c8e0cc4f577c72d3ae4e86727e26491f80cd8dc8063a9a/pyhmmer-0.7.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,120 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8c/36/5fda154acd4dbde82c5f8ef5d4bb2532707c8b6b1138645673773ac139f8/pyhmmer-0.7.2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,121 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0e/e2/f830bf6972a294569182d6ea4026af2a902fd6cdd6f06dd0ed62bce231e5/pyhmmer-0.7.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,121 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/39/0098a2887eb2db25c5cd259dc8635beca3b1aebb18d56b95fad851592223/pyhmmer-0.7.2-cp39-cp39-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,122 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ad/cf/b678ce405273a64b4295f73a3357e988b2bce163862a9730a4b81650c626/pyhmmer-0.7.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,122 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/27/44ffc8ed4f96c4c5cc2fef672cfb66c9d84f1f26bc903c812b0b4fa4d673/pyhmmer-0.7.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,123 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b5/c6/c57c9f59c6d5c6e177aee95307f863bd058585dd0b0bfca4c34f7f13cd42/pyhmmer-0.7.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,123 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/71/db/4f93af5a00686347346a325ac84cae95fe6af81681c3489c83ac27629862/pyhmmer-0.7.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,124 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d1/f7/4bbda84916bb53d5427da8950d2c057db73fccdc33c632c941c524cdb53d/pyhmmer-0.7.2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,125 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/03/cad0781ef73c4f4f52937840947c8d49cf2b2cbbd070c44b59e31d263a69/pyhmmer-0.7.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,125 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/15/65/80d52997be40674fd2c69b9828b058760e41b776b78af40a72902b86acd6/pyhmmer-0.7.2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,126 Found link https://files.pythonhosted.org/packages/df/a9/2657add69b3315c419cb618bd3d7fd5980a6b0f30599111e6ed64ca3cef4/pyhmmer-0.7.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.2 2023-09-19T00:42:03,127 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/43/c1/73a9f4bc5dff132e66d44aed2c65fe49d803345383ad1ce3be8263b90e67/pyhmmer-0.7.3-cp310-cp310-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,127 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c2/da/81f51877f44a77d141dea4b76937158affd960ef965ebfe0b5c13402a8f9/pyhmmer-0.7.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,128 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7a/1d/f1f7d1e4f936603678831b3bec693038ae09d7efd6eebd1324d0942c1659/pyhmmer-0.7.3-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,128 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/68/6fdcccd7979cd0092039016c3eac4caa02a11c1d3890ab0951311cc07744/pyhmmer-0.7.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,129 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c9/a2/b2a5784e37a247475e4a58816ccceec0734c5bbbc1a9a231306fc6735d8b/pyhmmer-0.7.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,130 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/96/ea0e67c0fd99012756abef527adc30a2528315cfb75944757faad9b78c27/pyhmmer-0.7.3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,130 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/62/49/d59f2cc10afaf02538988eae5d76975a0d402a2b641fe161d46a5a3a5b62/pyhmmer-0.7.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,131 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fd/74/2dec67a4756891cf0b45fa2ed3a1ca0d4a06ea3a3064090d20cf0f47e162/pyhmmer-0.7.3-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,131 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/04/8a/c3403218b9a93886aa949854a90b7ccf6beff39c85a0f4f722f31811202b/pyhmmer-0.7.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,132 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/33/b93f0ad31578f0c73948c8db6cec68f6af01df5a4df1da0727c9201487dc/pyhmmer-0.7.3-cp39-cp39-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,133 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/4f/70cf9da314d59163bd93c4a3cd8a4d0c6caa53937cdd6464c54d6a0268f4/pyhmmer-0.7.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,133 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5b/82/773159b8884f7a385e53499c92514ab66d3acf4f486a476675e2543d4c53/pyhmmer-0.7.3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,134 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/e2/db/62121a05d99bb99e7f14f0fddb97e82ae2bca48c891dd16d09f99b3eceab/pyhmmer-0.7.3-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,136 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b3/56/a1d60989df6dd057fca1566c4ba98373572236c886241e68e96af82fe92b/pyhmmer-0.7.3-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,137 Found link https://files.pythonhosted.org/packages/63/6c/9ba4ec4440099d30c4821e8740edb2340e6192b934e81057f7921666c1db/pyhmmer-0.7.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.3 2023-09-19T00:42:03,137 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dd/bb/fdb1068e287b6d09a73c1f7fa16aa2a850f0222f6419b8dcdc118815d409/pyhmmer-0.7.4-cp310-cp310-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,138 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f4/fe/23f9ad6e15feb0605df76f7585d681d79675982bf34ce4767f9ad08a79d3/pyhmmer-0.7.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,139 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/c8/64e1960c86439c6002664077b2c25dd6543d65b0dd204c2e4c064fa0bb6a/pyhmmer-0.7.4-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,139 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4a/3c/13929dd0c58c62b1513bdfe818969e6f2ec4da023527b38565af60b91b8b/pyhmmer-0.7.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,140 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/44/2ca763c3a425e922554b8eb10113ceb8c195639c6fccea846da2551cd923/pyhmmer-0.7.4-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,141 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/40/7dc955411414cee0db769d602cb2e8d593707786c9572bec05721491c5a9/pyhmmer-0.7.4-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,141 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/56/26/b8f4f0f8c71bf51d30885978636e4281ce8130bf57136d2d048da93ae2a9/pyhmmer-0.7.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,142 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3e/63/5219330ab124df581bc1d23046ff5b43534e606e9bdcf2abfc10a50b62f9/pyhmmer-0.7.4-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,142 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/7a/7e3d72b99ff0cede0022113042bc09f911041437a8f80827103b660bcecf/pyhmmer-0.7.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,143 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b2/16/e251dd701b9f1d6a63e3cca421108fc6cebb8538a9f6869296c6644a0c2c/pyhmmer-0.7.4-cp39-cp39-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,143 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/52/de/a269128e8891b97841930cd8addac3595dff08c1f90028619f7c73359cc1/pyhmmer-0.7.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,144 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6e/f6/44c176d316f9becce866f4536f026e433df3939052b5ad922013e324c400/pyhmmer-0.7.4-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,145 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0c/2f/8b471542f68ccfd607cbd8edd5416bb054c454349f72d1ec1aca4546ab64/pyhmmer-0.7.4-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,145 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5f/5b/56febea19382034f45f8efd31e4cc025e88d47fcbf3b8a702e67daca65d2/pyhmmer-0.7.4-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,146 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3f/4b/b94e77c892e9b6c656e753fe00a2e244dd63ceb1114004d3ab4c66940fc3/pyhmmer-0.7.4-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,146 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/df/9b/9dd24babb7f1ef8a2fc26e39684ecc85193685b14cac93b1ab3821eada03/pyhmmer-0.7.4-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,147 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a0/0f/687049e993619cf051ce153f9f5d195290f9df872a46ef5ed55f168cb073/pyhmmer-0.7.4-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,148 Found link https://files.pythonhosted.org/packages/d4/83/1abac79f144f82424fc1e3959db6fda4d5cedc251d804b0bedbfca9b90b0/pyhmmer-0.7.4.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.4 2023-09-19T00:42:03,148 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e0/76/9d254f4f85a2b15718dca73e2091837e359b3b19eb30d47ae15fc236c088/pyhmmer-0.8.0-cp310-cp310-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,149 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/da/4e/6698347f2848bf6e953daee133c6cc27fb7f340a1946815cc9566a3a3539/pyhmmer-0.8.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,149 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/72/99abe4102e7994572f8d786abaaa8974352e917a690e888c2becc89f93b6/pyhmmer-0.8.0-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,150 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c4/a6/2560bcdda70fda6cb767272851a84c700ab754bb3193ab4e7a077d10cf3d/pyhmmer-0.8.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,150 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/54/80/54e8e341dd4dbe26f6421db55e52a5381403c5a7fdb505b6348dc9661e07/pyhmmer-0.8.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,151 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ff/c5/7fd7e8f5418e609b6d6b12c5a24439943d85600a98ca94a248cfcf5aa1dd/pyhmmer-0.8.0-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,151 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9a/d4/0d65fae4b288faaec2eb9cc27db600a01dcf50be1ad4961904340e1b74f6/pyhmmer-0.8.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,152 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cc/73/fe5f2fab87655bb9eb30f9b6177b1d4b1593873d12960a5e4fee74d9c9f2/pyhmmer-0.8.0-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,153 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/17/8e/1161db151a5638878ffa1de64d6af0133a3a24400cd02ae6967aef498c4d/pyhmmer-0.8.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,153 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/71/2d/6d020e9303d2422ed199d3181a96117b25366bef87fd4e1d49f964644a72/pyhmmer-0.8.0-cp39-cp39-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,154 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bb/d6/df65848b5f3c3ea24a7a1a19fee4fd559377953d62e048bec4eba7b68043/pyhmmer-0.8.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,154 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/88/90/0f0af36b0861b542292872bf99696eb852bb2ffdae35e02532b924a91736/pyhmmer-0.8.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,155 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/29/5a7a4bd1ada554e49d34d8050ae571e5679f80fcae115ae2e4794cfac402/pyhmmer-0.8.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,155 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cd/2e/5a9fdfa2fa8e7896954ae2bdceea262ed56668704d442e7b4a8f2cfca534/pyhmmer-0.8.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,156 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/18/64/3883ac90e9e1cd3826a4ba4872af387f914b6879d76cb48e2ccca4d589ed/pyhmmer-0.8.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,156 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/f2/1a/daef14e72d7b7115c814a9fcc2ff6c34cd79b777221d9b374e0452724a03/pyhmmer-0.8.1-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,167 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/fe/6568f474e66ade3d023fd9c1a9d3e9c0d612eebb13fd2abbcaa32e0c07d5/pyhmmer-0.8.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,168 Found link https://files.pythonhosted.org/packages/3d/12/beb37509be629206b9ca05f631533271c4bc4ed4f52891f772ca1ec0219d/pyhmmer-0.8.1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.8.1 2023-09-19T00:42:03,169 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5d/f2/5bf9ca5b718e665b613914fa33b5299040268e289c8bd0b0794c5429981d/pyhmmer-0.8.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,172 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/19/cc/dd603f6c31b90171f2a74e8bc83cd981e3e5c9275035127f32b2e709e0c1/pyhmmer-0.8.2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,173 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3b/96/a3db6773bdb59ce89c4b5806de0ea3d37b07c4bf930fab20dbc60873c737/pyhmmer-0.8.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,174 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/47/d9/4e2212224e53a8b9373c0831a3c16d115dce9c6e2c847c867a1f1b8284fd/pyhmmer-0.8.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,176 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/f4/28ed40514d1f483669b4f80de51a7c1770ebd84255890ea468f641ef17c4/pyhmmer-0.8.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,177 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7f/64/845f17d9680d7703d8deaa729141dd33da734b9602cebc224a7533c0f239/pyhmmer-0.8.2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,177 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/7c/17274676ff47462404c50fd7d03eb2793ab33d0405fb8830c674f29cd7e0/pyhmmer-0.8.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,178 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/6d/1fd4669db2d3a14e80bdb59377b0a537b26fb98798cbce9a4ccc2943d5b1/pyhmmer-0.8.2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,178 Found link https://files.pythonhosted.org/packages/f1/c9/c047535dbe805d92a3d6fb8b602f19728c4c91d897a4da2f8d46f5f83cc6/pyhmmer-0.8.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.8.2 2023-09-19T00:42:03,179 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/98/31/4b8b4631703b3a96ba4485306568c658f9f2d5f56161c705db8f695dec71/pyhmmer-0.9.0-cp310-cp310-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,180 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/01/8f/cd5c956a65373f873d4bcebd59546abf2103f3845b81da10d7897a9cfddc/pyhmmer-0.9.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,180 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/02/99/8e05a5b9a8664b7cf8a2c59f0b7f05ada19b30354fafcf0a240bff65fd79/pyhmmer-0.9.0-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,181 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7f/61/f2da88596a2295848c7698a913f4534492e9f78382d1aa8047f158619b3c/pyhmmer-0.9.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,181 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ec/3c/64df043166c02805c895acd8b1843d5a0d4f76ef923600cb4043441daa59/pyhmmer-0.9.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,182 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/30/13/127d07fb43f4b3b2889d73a77c0181a92a278ea6aefce0f8eb0811e73c15/pyhmmer-0.9.0-cp37-cp37m-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,182 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/43/b5/8372c730e4acddd8124e905723ce50964c92326f8410c46d6a6890d7df34/pyhmmer-0.10.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,207 Found link https://files.pythonhosted.org/packages/0a/5e/d60700a6ddeb5f27f778b9a63b1646d75993bb17bdec97fd78530b7931f3/pyhmmer-0.10.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.10.0 2023-09-19T00:42:03,207 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/86/a4/a9a9d0aea58a9ac6d5b62b9229c22494736a7bd8b9ec99f9f2eeff2bcd2d/pyhmmer-0.10.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,208 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/95/64/3a7a7720a43656c97b33b00e89c9b401caeaea50c84e1a71bab10f7266c1/pyhmmer-0.10.1-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,220 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bd/6a/ce9590e144dbeb55ed2048758e5c943d10655f26a62563141f3e3010ae19/pyhmmer-0.10.1-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,220 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4c/99/9b925a594710f5ecb50c2c37d53c9f7ec8c104388f2ceaff6777dcd6e131/pyhmmer-0.10.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,221 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/ec/54/36c70e77e6413e19ad6d05970b487b0c0a0ebf1a4d8490faad6be41ac854/pyhmmer-0.10.1-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,223 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ff/e0/4c610cc134be7c29179c6a97bf2c240d8e1c72b22c5a1737b2a1c19bdb90/pyhmmer-0.10.1-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,224 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e8/c3/e0edff10b341aac101ef983908d2f8bb869c9be676679ea8f59815882bac/pyhmmer-0.10.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,224 Found link https://files.pythonhosted.org/packages/95/c6/12ae4d6960a04324826ca90ee7b6d880572e3591d5de09f2f68ba019fa17/pyhmmer-0.10.1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.10.1 2023-09-19T00:42:03,225 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ad/90/7e2706935cad0e387214d34a599095426f6e44d1ad7e3ec9802d162c9ee0/pyhmmer-0.10.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,226 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cd/d7/437b2fc607ddcf697605a04df0b04b64a8fa1b0b55db229b7aca4f035969/pyhmmer-0.10.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,226 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/44/fc/1e1e14aa7a2ab693090cf1040ed246036f708cc48bf5701c57c296f297b7/pyhmmer-0.10.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,227 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/38/d3/831e1ee37974436d6ab742d436fdc6ff2df1fda3e7e97026f196d2593e1f/pyhmmer-0.10.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,227 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0f/e4/459d0124030c15a82159194edb62f5f6a010b10032235e3ffee709baa1fc/pyhmmer-0.10.2-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,228 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/08/91/5e810ff9a13d7c393409a168253802ea0f0d7777a0c44924f7fa82085e1a/pyhmmer-0.10.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,229 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a0/fb/b0b3453d6b28ff53a5d9f51e5e8ab2844fef60f674e6c1d65a053077a9bc/pyhmmer-0.10.2-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,229 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/87/b36fa0648ded05391f83634af6213c14ff17f939a0771a6dfd83782c8eb2/pyhmmer-0.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,230 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d5/1e/662c9f9261b81cd19c79536f5e5a9cde1ccc44e084b831b5924ecd06da4b/pyhmmer-0.10.2-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,230 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/c2/fd23b275a58eb1c78715d35c91d99299ed5cca478ccea797fc225ec2d13f/pyhmmer-0.10.2-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,231 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e3/c4/075f1471df9a308e71eb47d9b67eb906765cfc31613de910fd5a7729f6fc/pyhmmer-0.10.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,231 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/36/25/6915d1f146edf0ff74781d3bb8c1647cb94985028a6748cf24f46715a89e/pyhmmer-0.10.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,237 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/78/03/bacf935a39087492a87510664ba04a3cbec2181299049c723b2f248bb1ad/pyhmmer-0.10.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,237 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/24/da/62855a8422e98a83d3c1dbc04413826424e8e423f91265260fa56020f5b7/pyhmmer-0.10.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,238 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/53/246a8e4591ab76bff76f58018bddca4b050ff1f82279083ce4aed6750d89/pyhmmer-0.10.2-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,238 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/a3/7f05801ed46cbcf805ae42a2a55d98b64fdd8295ebacbcbb3b1a7c8d35db/pyhmmer-0.10.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,239 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/83/a9/b9749543dd1845839f3aa1cacac9ff19eac8636c7c8411242631afa1d5f6/pyhmmer-0.10.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,239 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c9/66/bfc2e4c80e1681158948d466202a30ab7768494adacffa9697074a4cc7c1/pyhmmer-0.10.2-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,240 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/43/63/073760d0690bddaf5503fa4da4fd2584572b316553f7933ac5aaf5c3ddf5/pyhmmer-0.10.2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,240 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/60/f8/fef1c893c5fef72b50472ca932c4f81ca97150c12ce309c0a4125fd076a5/pyhmmer-0.10.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,241 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e3/e8/3fa6f94382093941d7bbaa194e2a8558d3d4a8078e03553104472dde89c3/pyhmmer-0.10.2-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,241 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/00/f8/07c56b73bad1406945aa8b47ac82fad065da971cd24678b1ef09708422fe/pyhmmer-0.10.2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,242 Found link https://files.pythonhosted.org/packages/ec/58/b52d2eff6050d58fda2ed7aa9dadbb805cc9a36b1f034030257613cee316/pyhmmer-0.10.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.10.2 2023-09-19T00:42:03,244 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmer/ 2023-09-19T00:42:03,244 Getting page https://www.piwheels.org/simple/pyhmmer/ 2023-09-19T00:42:03,245 Found index url https://www.piwheels.org/simple/ 2023-09-19T00:42:03,524 Fetched page https://www.piwheels.org/simple/pyhmmer/ as text/html 2023-09-19T00:42:03,528 Skipping link: No binaries permitted for pyhmmer: https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.2-cp39-cp39-linux_armv7l.whl#sha256=5b5677b3de58a0cf905f4362f89271ca9ffe6d827c6566a31d43fb1f9954d89b (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,529 Skipping link: No binaries permitted for pyhmmer: https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.2-cp39-cp39-linux_armv6l.whl#sha256=5b5677b3de58a0cf905f4362f89271ca9ffe6d827c6566a31d43fb1f9954d89b (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,529 Skipping link: No binaries permitted for pyhmmer: 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https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.0-cp39-cp39-linux_armv7l.whl#sha256=bc599f2682ac5c067c98071ddc2b813b7f322ee725995f783a9fa338baf42fca (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,533 Skipping link: No binaries permitted for pyhmmer: https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.0-cp39-cp39-linux_armv6l.whl#sha256=bc599f2682ac5c067c98071ddc2b813b7f322ee725995f783a9fa338baf42fca (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,533 Skipping link: No binaries permitted for pyhmmer: https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.0-cp37-cp37m-linux_armv7l.whl#sha256=d3dccbcc605d6187a81a48ed89b005185e14e946e16b01cc495a93a4a4e4893d (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,534 Skipping link: No binaries permitted for pyhmmer: https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.0-cp37-cp37m-linux_armv6l.whl#sha256=d3dccbcc605d6187a81a48ed89b005185e14e946e16b01cc495a93a4a4e4893d (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-09-19T00:42:03,534 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmer/ 2023-09-19T00:42:03,535 Skipping link: not a file: https://pypi.org/simple/pyhmmer/ 2023-09-19T00:42:03,558 Given no hashes to check 1 links for project 'pyhmmer': discarding no candidates 2023-09-19T00:42:03,576 Collecting pyhmmer==0.6.2 2023-09-19T00:42:03,578 Created temporary directory: /tmp/pip-unpack-o5z80q0b 2023-09-19T00:42:04,081 Downloading pyhmmer-0.6.2.tar.gz (9.9 MB) 2023-09-19T00:42:08,958 Added pyhmmer==0.6.2 from https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz to build tracker '/tmp/pip-build-tracker-p1ldwojv' 2023-09-19T00:42:08,962 Created temporary directory: /tmp/pip-build-env-9c_vqy50 2023-09-19T00:42:08,967 Installing build dependencies: started 2023-09-19T00:42:08,968 Running command pip subprocess to install build dependencies 2023-09-19T00:42:10,193 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-19T00:42:10,733 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-19T00:42:12,414 Collecting setuptools>=46.4 2023-09-19T00:42:12,415 Obtaining dependency information for setuptools>=46.4 from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-19T00:42:12,420 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-19T00:42:13,819 Collecting cython~=0.29.16 2023-09-19T00:42:13,820 Obtaining dependency information for cython~=0.29.16 from https://files.pythonhosted.org/packages/3f/d6/9eed523aeaca42acbaa3e6d3850edae780dc7f8da9df1bf6a2ceb851839c/Cython-0.29.36-py2.py3-none-any.whl.metadata 2023-09-19T00:42:13,826 Using cached Cython-0.29.36-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-19T00:42:14,002 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-19T00:42:14,038 Using cached Cython-0.29.36-py2.py3-none-any.whl (988 kB) 2023-09-19T00:42:16,537 Installing collected packages: setuptools, cython 2023-09-19T00:42:21,216 Creating /tmp/pip-build-env-9c_vqy50/overlay/local/bin 2023-09-19T00:42:21,218 changing mode of /tmp/pip-build-env-9c_vqy50/overlay/local/bin/cygdb to 755 2023-09-19T00:42:21,220 changing mode of /tmp/pip-build-env-9c_vqy50/overlay/local/bin/cython to 755 2023-09-19T00:42:21,222 changing mode of /tmp/pip-build-env-9c_vqy50/overlay/local/bin/cythonize to 755 2023-09-19T00:42:21,244 Successfully installed cython-0.29.36 setuptools-68.2.2 2023-09-19T00:42:21,863 Installing build dependencies: finished with status 'done' 2023-09-19T00:42:21,866 Getting requirements to build wheel: started 2023-09-19T00:42:21,867 Running command Getting requirements to build wheel 2023-09-19T00:42:22,639 pyHMMER is not supported on CPU architecture: 'armv7l' 2023-09-19T00:42:23,069 Getting requirements to build wheel: finished with status 'done' 2023-09-19T00:42:23,093 Installing backend dependencies: started 2023-09-19T00:42:23,094 Running command pip subprocess to install backend dependencies 2023-09-19T00:42:24,225 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-19T00:42:24,732 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-19T00:42:25,403 Collecting wheel 2023-09-19T00:42:25,420 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-19T00:42:27,629 Installing collected packages: wheel 2023-09-19T00:42:27,858 Creating /tmp/pip-build-env-9c_vqy50/normal/local/bin 2023-09-19T00:42:27,860 changing mode of /tmp/pip-build-env-9c_vqy50/normal/local/bin/wheel to 755 2023-09-19T00:42:27,871 Successfully installed wheel-0.41.2 2023-09-19T00:42:28,359 Installing backend dependencies: finished with status 'done' 2023-09-19T00:42:28,361 Created temporary directory: /tmp/pip-modern-metadata-0vf1ea1g 2023-09-19T00:42:28,363 Preparing metadata (pyproject.toml): started 2023-09-19T00:42:28,364 Running command Preparing metadata (pyproject.toml) 2023-09-19T00:42:29,146 pyHMMER is not supported on CPU architecture: 'armv7l' 2023-09-19T00:42:29,275 running dist_info 2023-09-19T00:42:29,290 creating /tmp/pip-modern-metadata-0vf1ea1g/pyhmmer.egg-info 2023-09-19T00:42:29,294 writing /tmp/pip-modern-metadata-0vf1ea1g/pyhmmer.egg-info/PKG-INFO 2023-09-19T00:42:29,299 writing dependency_links to /tmp/pip-modern-metadata-0vf1ea1g/pyhmmer.egg-info/dependency_links.txt 2023-09-19T00:42:29,301 writing requirements to /tmp/pip-modern-metadata-0vf1ea1g/pyhmmer.egg-info/requires.txt 2023-09-19T00:42:29,302 writing top-level names to /tmp/pip-modern-metadata-0vf1ea1g/pyhmmer.egg-info/top_level.txt 2023-09-19T00:42:29,303 writing manifest file '/tmp/pip-modern-metadata-0vf1ea1g/pyhmmer.egg-info/SOURCES.txt' 2023-09-19T00:42:29,345 reading manifest file '/tmp/pip-modern-metadata-0vf1ea1g/pyhmmer.egg-info/SOURCES.txt' 2023-09-19T00:42:29,347 reading manifest template 'MANIFEST.in' 2023-09-19T00:42:29,849 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2023-09-19T00:42:29,850 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2023-09-19T00:42:29,852 no previously-included directories found matching 'vendor/easel/demotic' 2023-09-19T00:42:29,853 no previously-included directories found matching 'vendor/easel/documentation' 2023-09-19T00:42:29,855 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2023-09-19T00:42:29,856 no previously-included directories found matching 'vendor/easel/miniapps' 2023-09-19T00:42:29,857 no previously-included directories found matching 'vendor/easel/testsuite' 2023-09-19T00:42:29,858 no previously-included directories found matching 'vendor/hmmer/autobuild' 2023-09-19T00:42:29,859 no previously-included directories found matching 'vendor/hmmer/documentation' 2023-09-19T00:42:29,861 no previously-included directories found matching 'vendor/hmmer/contrib' 2023-09-19T00:42:29,862 no previously-included directories found matching 'vendor/hmmer/profmark' 2023-09-19T00:42:29,863 no previously-included directories found matching 'vendor/hmmer/testsuite' 2023-09-19T00:42:29,864 no previously-included directories found matching 'vendor/hmmer/test-speed' 2023-09-19T00:42:29,866 no previously-included directories found matching 'vendor/hmmer/tutorial' 2023-09-19T00:42:29,866 adding license file 'COPYING' 2023-09-19T00:42:29,888 writing manifest file '/tmp/pip-modern-metadata-0vf1ea1g/pyhmmer.egg-info/SOURCES.txt' 2023-09-19T00:42:29,891 creating '/tmp/pip-modern-metadata-0vf1ea1g/pyhmmer-0.6.2.dist-info' 2023-09-19T00:42:30,094 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-19T00:42:30,100 Source in /tmp/pip-wheel-d5lt2k56/pyhmmer_32e77c928bf746c59bf6935646ed9b11 has version 0.6.2, which satisfies requirement pyhmmer==0.6.2 from https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz 2023-09-19T00:42:30,101 Removed pyhmmer==0.6.2 from https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz from build tracker '/tmp/pip-build-tracker-p1ldwojv' 2023-09-19T00:42:30,107 Created temporary directory: /tmp/pip-unpack-5hy38y7t 2023-09-19T00:42:30,108 Created temporary directory: /tmp/pip-unpack-zdcabkj7 2023-09-19T00:42:30,114 Building wheels for collected packages: pyhmmer 2023-09-19T00:42:30,118 Created temporary directory: /tmp/pip-wheel-70nnyty2 2023-09-19T00:42:30,118 Destination directory: /tmp/pip-wheel-70nnyty2 2023-09-19T00:42:30,121 Building wheel for pyhmmer (pyproject.toml): started 2023-09-19T00:42:30,122 Running command Building wheel for pyhmmer (pyproject.toml) 2023-09-19T00:42:30,857 pyHMMER is not supported on CPU architecture: 'armv7l' 2023-09-19T00:42:31,026 running bdist_wheel 2023-09-19T00:42:31,050 running build 2023-09-19T00:42:31,051 running build_py 2023-09-19T00:42:31,059 creating build 2023-09-19T00:42:31,059 creating build/lib.linux-armv7l-cpython-311 2023-09-19T00:42:31,060 creating build/lib.linux-armv7l-cpython-311/pyhmmer 2023-09-19T00:42:31,061 copying pyhmmer/hmmer.py -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-09-19T00:42:31,064 copying pyhmmer/utils.py -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-09-19T00:42:31,065 copying pyhmmer/__init__.py -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-09-19T00:42:31,067 running egg_info 2023-09-19T00:42:31,070 writing pyhmmer.egg-info/PKG-INFO 2023-09-19T00:42:31,074 writing dependency_links to pyhmmer.egg-info/dependency_links.txt 2023-09-19T00:42:31,076 writing requirements to pyhmmer.egg-info/requires.txt 2023-09-19T00:42:31,077 writing top-level names to pyhmmer.egg-info/top_level.txt 2023-09-19T00:42:31,088 reading manifest file 'pyhmmer.egg-info/SOURCES.txt' 2023-09-19T00:42:31,103 reading manifest template 'MANIFEST.in' 2023-09-19T00:42:31,566 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2023-09-19T00:42:31,568 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2023-09-19T00:42:31,570 no previously-included directories found matching 'vendor/easel/demotic' 2023-09-19T00:42:31,571 no previously-included directories found matching 'vendor/easel/documentation' 2023-09-19T00:42:31,573 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2023-09-19T00:42:31,575 no previously-included directories found matching 'vendor/easel/miniapps' 2023-09-19T00:42:31,576 no previously-included directories found matching 'vendor/easel/testsuite' 2023-09-19T00:42:31,578 no previously-included directories found matching 'vendor/hmmer/autobuild' 2023-09-19T00:42:31,579 no previously-included directories found matching 'vendor/hmmer/documentation' 2023-09-19T00:42:31,581 no previously-included directories found matching 'vendor/hmmer/contrib' 2023-09-19T00:42:31,583 no previously-included directories found matching 'vendor/hmmer/profmark' 2023-09-19T00:42:31,584 no previously-included directories found matching 'vendor/hmmer/testsuite' 2023-09-19T00:42:31,586 no previously-included directories found matching 'vendor/hmmer/test-speed' 2023-09-19T00:42:31,587 no previously-included directories found matching 'vendor/hmmer/tutorial' 2023-09-19T00:42:31,588 adding license file 'COPYING' 2023-09-19T00:42:31,617 writing manifest file 'pyhmmer.egg-info/SOURCES.txt' 2023-09-19T00:42:31,622 /tmp/pip-build-env-9c_vqy50/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.fileobj' is absent from the `packages` configuration. 2023-09-19T00:42:31,622 !! 2023-09-19T00:42:31,624 ******************************************************************************** 2023-09-19T00:42:31,624 ############################ 2023-09-19T00:42:31,625 # Package would be ignored # 2023-09-19T00:42:31,625 ############################ 2023-09-19T00:42:31,626 Python recognizes 'pyhmmer.fileobj' as an importable package[^1], 2023-09-19T00:42:31,626 but it is absent from setuptools' `packages` configuration. 2023-09-19T00:42:31,627 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-19T00:42:31,628 package, please make sure that 'pyhmmer.fileobj' is explicitly added 2023-09-19T00:42:31,629 to the `packages` configuration field. 2023-09-19T00:42:31,630 Alternatively, you can also rely on setuptools' discovery methods 2023-09-19T00:42:31,631 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-19T00:42:31,631 instead of `find_packages(...)`/`find:`). 2023-09-19T00:42:31,632 You can read more about "package discovery" on setuptools documentation page: 2023-09-19T00:42:31,633 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-19T00:42:31,634 If you don't want 'pyhmmer.fileobj' to be distributed and are 2023-09-19T00:42:31,634 already explicitly excluding 'pyhmmer.fileobj' via 2023-09-19T00:42:31,635 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-19T00:42:31,635 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-19T00:42:31,635 combination with a more fine grained `package-data` configuration. 2023-09-19T00:42:31,636 You can read more about "package data files" on setuptools documentation page: 2023-09-19T00:42:31,637 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-19T00:42:31,638 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-19T00:42:31,638 even if it does not contain any `.py` files. 2023-09-19T00:42:31,639 On the other hand, currently there is no concept of package data 2023-09-19T00:42:31,639 directory, all directories are treated like packages. 2023-09-19T00:42:31,640 ******************************************************************************** 2023-09-19T00:42:31,640 !! 2023-09-19T00:42:31,641 check.warn(importable) 2023-09-19T00:42:31,641 /tmp/pip-build-env-9c_vqy50/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.reexports' is absent from the `packages` configuration. 2023-09-19T00:42:31,642 !! 2023-09-19T00:42:31,643 ******************************************************************************** 2023-09-19T00:42:31,643 ############################ 2023-09-19T00:42:31,644 # Package would be ignored # 2023-09-19T00:42:31,644 ############################ 2023-09-19T00:42:31,645 Python recognizes 'pyhmmer.reexports' as an importable package[^1], 2023-09-19T00:42:31,645 but it is absent from setuptools' `packages` configuration. 2023-09-19T00:42:31,646 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-19T00:42:31,647 package, please make sure that 'pyhmmer.reexports' is explicitly added 2023-09-19T00:42:31,647 to the `packages` configuration field. 2023-09-19T00:42:31,649 Alternatively, you can also rely on setuptools' discovery methods 2023-09-19T00:42:31,649 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-19T00:42:31,650 instead of `find_packages(...)`/`find:`). 2023-09-19T00:42:31,651 You can read more about "package discovery" on setuptools documentation page: 2023-09-19T00:42:31,652 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-19T00:42:31,653 If you don't want 'pyhmmer.reexports' to be distributed and are 2023-09-19T00:42:31,653 already explicitly excluding 'pyhmmer.reexports' via 2023-09-19T00:42:31,654 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-19T00:42:31,654 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-19T00:42:31,655 combination with a more fine grained `package-data` configuration. 2023-09-19T00:42:31,656 You can read more about "package data files" on setuptools documentation page: 2023-09-19T00:42:31,657 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-19T00:42:31,659 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-19T00:42:31,659 even if it does not contain any `.py` files. 2023-09-19T00:42:31,660 On the other hand, currently there is no concept of package data 2023-09-19T00:42:31,661 directory, all directories are treated like packages. 2023-09-19T00:42:31,661 ******************************************************************************** 2023-09-19T00:42:31,662 !! 2023-09-19T00:42:31,662 check.warn(importable) 2023-09-19T00:42:31,663 /tmp/pip-build-env-9c_vqy50/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests' is absent from the `packages` configuration. 2023-09-19T00:42:31,664 !! 2023-09-19T00:42:31,665 ******************************************************************************** 2023-09-19T00:42:31,665 ############################ 2023-09-19T00:42:31,665 # Package would be ignored # 2023-09-19T00:42:31,666 ############################ 2023-09-19T00:42:31,666 Python recognizes 'pyhmmer.tests' as an importable package[^1], 2023-09-19T00:42:31,667 but it is absent from setuptools' `packages` configuration. 2023-09-19T00:42:31,668 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-19T00:42:31,669 package, please make sure that 'pyhmmer.tests' is explicitly added 2023-09-19T00:42:31,670 to the `packages` configuration field. 2023-09-19T00:42:31,670 Alternatively, you can also rely on setuptools' discovery methods 2023-09-19T00:42:31,671 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-19T00:42:31,671 instead of `find_packages(...)`/`find:`). 2023-09-19T00:42:31,672 You can read more about "package discovery" on setuptools documentation page: 2023-09-19T00:42:31,673 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-19T00:42:31,674 If you don't want 'pyhmmer.tests' to be distributed and are 2023-09-19T00:42:31,675 already explicitly excluding 'pyhmmer.tests' via 2023-09-19T00:42:31,675 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-19T00:42:31,676 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-19T00:42:31,676 combination with a more fine grained `package-data` configuration. 2023-09-19T00:42:31,677 You can read more about "package data files" on setuptools documentation page: 2023-09-19T00:42:31,678 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-19T00:42:31,680 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-19T00:42:31,680 even if it does not contain any `.py` files. 2023-09-19T00:42:31,680 On the other hand, currently there is no concept of package data 2023-09-19T00:42:31,681 directory, all directories are treated like packages. 2023-09-19T00:42:31,681 ******************************************************************************** 2023-09-19T00:42:31,682 !! 2023-09-19T00:42:31,683 check.warn(importable) 2023-09-19T00:42:31,684 /tmp/pip-build-env-9c_vqy50/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data' is absent from the `packages` configuration. 2023-09-19T00:42:31,684 !! 2023-09-19T00:42:31,685 ******************************************************************************** 2023-09-19T00:42:31,686 ############################ 2023-09-19T00:42:31,686 # Package would be ignored # 2023-09-19T00:42:31,687 ############################ 2023-09-19T00:42:31,687 Python recognizes 'pyhmmer.tests.data' as an importable package[^1], 2023-09-19T00:42:31,688 but it is absent from setuptools' `packages` configuration. 2023-09-19T00:42:31,689 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-19T00:42:31,690 package, please make sure that 'pyhmmer.tests.data' is explicitly added 2023-09-19T00:42:31,690 to the `packages` configuration field. 2023-09-19T00:42:31,692 Alternatively, you can also rely on setuptools' discovery methods 2023-09-19T00:42:31,692 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-19T00:42:31,693 instead of `find_packages(...)`/`find:`). 2023-09-19T00:42:31,694 You can read more about "package discovery" on setuptools documentation page: 2023-09-19T00:42:31,695 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-19T00:42:31,695 If you don't want 'pyhmmer.tests.data' to be distributed and are 2023-09-19T00:42:31,696 already explicitly excluding 'pyhmmer.tests.data' via 2023-09-19T00:42:31,696 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-19T00:42:31,697 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-19T00:42:31,697 combination with a more fine grained `package-data` configuration. 2023-09-19T00:42:31,698 You can read more about "package data files" on setuptools documentation page: 2023-09-19T00:42:31,699 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-19T00:42:31,700 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-19T00:42:31,700 even if it does not contain any `.py` files. 2023-09-19T00:42:31,701 On the other hand, currently there is no concept of package data 2023-09-19T00:42:31,701 directory, all directories are treated like packages. 2023-09-19T00:42:31,702 ******************************************************************************** 2023-09-19T00:42:31,703 !! 2023-09-19T00:42:31,703 check.warn(importable) 2023-09-19T00:42:31,703 /tmp/pip-build-env-9c_vqy50/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data.hmms' is absent from the `packages` configuration. 2023-09-19T00:42:31,704 !! 2023-09-19T00:42:31,705 ******************************************************************************** 2023-09-19T00:42:31,705 ############################ 2023-09-19T00:42:31,706 # Package would be ignored # 2023-09-19T00:42:31,706 ############################ 2023-09-19T00:42:31,707 Python recognizes 'pyhmmer.tests.data.hmms' as an importable package[^1], 2023-09-19T00:42:31,707 but it is absent from setuptools' `packages` configuration. 2023-09-19T00:42:31,708 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-19T00:42:31,709 package, please make sure that 'pyhmmer.tests.data.hmms' is explicitly added 2023-09-19T00:42:31,709 to the `packages` configuration field. 2023-09-19T00:42:31,710 Alternatively, you can also rely on setuptools' discovery methods 2023-09-19T00:42:31,711 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-19T00:42:31,711 instead of `find_packages(...)`/`find:`). 2023-09-19T00:42:31,712 You can read more about "package discovery" on setuptools documentation page: 2023-09-19T00:42:31,713 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-19T00:42:31,714 If you don't want 'pyhmmer.tests.data.hmms' to be distributed and are 2023-09-19T00:42:31,715 already explicitly excluding 'pyhmmer.tests.data.hmms' via 2023-09-19T00:42:31,715 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-19T00:42:31,716 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-19T00:42:31,716 combination with a more fine grained `package-data` configuration. 2023-09-19T00:42:31,717 You can read more about "package data files" on setuptools documentation page: 2023-09-19T00:42:31,718 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-19T00:42:31,719 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-19T00:42:31,720 even if it does not contain any `.py` files. 2023-09-19T00:42:31,720 On the other hand, currently there is no concept of package data 2023-09-19T00:42:31,720 directory, all directories are treated like packages. 2023-09-19T00:42:31,721 ******************************************************************************** 2023-09-19T00:42:31,722 !! 2023-09-19T00:42:31,722 check.warn(importable) 2023-09-19T00:42:31,723 /tmp/pip-build-env-9c_vqy50/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data.hmms.bin' is absent from the `packages` configuration. 2023-09-19T00:42:31,723 !! 2023-09-19T00:42:31,724 ******************************************************************************** 2023-09-19T00:42:31,724 ############################ 2023-09-19T00:42:31,725 # Package would be ignored # 2023-09-19T00:42:31,725 ############################ 2023-09-19T00:42:31,726 Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package[^1], 2023-09-19T00:42:31,726 but it is absent from setuptools' `packages` configuration. 2023-09-19T00:42:31,727 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-19T00:42:31,727 package, please make sure that 'pyhmmer.tests.data.hmms.bin' is explicitly added 2023-09-19T00:42:31,728 to the `packages` configuration field. 2023-09-19T00:42:31,729 Alternatively, you can also rely on setuptools' discovery methods 2023-09-19T00:42:31,729 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-19T00:42:31,730 instead of `find_packages(...)`/`find:`). 2023-09-19T00:42:31,731 You can read more about "package discovery" on setuptools documentation page: 2023-09-19T00:42:31,732 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-19T00:42:31,733 If you don't want 'pyhmmer.tests.data.hmms.bin' to be distributed and are 2023-09-19T00:42:31,733 already explicitly excluding 'pyhmmer.tests.data.hmms.bin' via 2023-09-19T00:42:31,734 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-19T00:42:31,734 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-19T00:42:31,735 combination with a more fine grained `package-data` configuration. 2023-09-19T00:42:31,736 You can read more about "package data files" on setuptools documentation page: 2023-09-19T00:42:31,737 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-19T00:42:31,738 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-19T00:42:31,739 even if it does not contain any `.py` files. 2023-09-19T00:42:31,740 On the other hand, currently there is no concept of package data 2023-09-19T00:42:31,740 directory, all directories are treated like packages. 2023-09-19T00:42:31,741 ******************************************************************************** 2023-09-19T00:42:31,743 !! 2023-09-19T00:42:31,744 check.warn(importable) 2023-09-19T00:42:31,745 /tmp/pip-build-env-9c_vqy50/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data.hmms.db' is absent from the `packages` configuration. 2023-09-19T00:42:31,745 !! 2023-09-19T00:42:31,746 ******************************************************************************** 2023-09-19T00:42:31,747 ############################ 2023-09-19T00:42:31,748 # Package would be ignored # 2023-09-19T00:42:31,748 ############################ 2023-09-19T00:42:31,749 Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package[^1], 2023-09-19T00:42:31,750 but it is absent from setuptools' `packages` configuration. 2023-09-19T00:42:31,752 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-19T00:42:31,752 package, please make sure that 'pyhmmer.tests.data.hmms.db' is explicitly added 2023-09-19T00:42:31,753 to the `packages` configuration field. 2023-09-19T00:42:31,754 Alternatively, you can also rely on setuptools' discovery methods 2023-09-19T00:42:31,754 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-19T00:42:31,754 instead of `find_packages(...)`/`find:`). 2023-09-19T00:42:31,756 You can read more about "package discovery" on setuptools documentation page: 2023-09-19T00:42:31,756 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-19T00:42:31,757 If you don't want 'pyhmmer.tests.data.hmms.db' to be distributed and are 2023-09-19T00:42:31,758 already explicitly excluding 'pyhmmer.tests.data.hmms.db' via 2023-09-19T00:42:31,758 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-19T00:42:31,758 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-19T00:42:31,759 combination with a more fine grained `package-data` configuration. 2023-09-19T00:42:31,761 You can read more about "package data files" on setuptools documentation page: 2023-09-19T00:42:31,762 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-19T00:42:31,764 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-19T00:42:31,764 even if it does not contain any `.py` files. 2023-09-19T00:42:31,765 On the other hand, currently there is no concept of package data 2023-09-19T00:42:31,765 directory, all directories are treated like packages. 2023-09-19T00:42:31,766 ******************************************************************************** 2023-09-19T00:42:31,767 !! 2023-09-19T00:42:31,767 check.warn(importable) 2023-09-19T00:42:31,768 /tmp/pip-build-env-9c_vqy50/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data.hmms.txt' is absent from the `packages` configuration. 2023-09-19T00:42:31,768 !! 2023-09-19T00:42:31,769 ******************************************************************************** 2023-09-19T00:42:31,770 ############################ 2023-09-19T00:42:31,771 # Package would be ignored # 2023-09-19T00:42:31,771 ############################ 2023-09-19T00:42:31,772 Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package[^1], 2023-09-19T00:42:31,772 but it is absent from setuptools' `packages` configuration. 2023-09-19T00:42:31,774 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-19T00:42:31,774 package, please make sure that 'pyhmmer.tests.data.hmms.txt' is explicitly added 2023-09-19T00:42:31,775 to the `packages` configuration field. 2023-09-19T00:42:31,776 Alternatively, you can also rely on setuptools' discovery methods 2023-09-19T00:42:31,776 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-19T00:42:31,777 instead of `find_packages(...)`/`find:`). 2023-09-19T00:42:31,778 You can read more about "package discovery" on setuptools documentation page: 2023-09-19T00:42:31,780 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-19T00:42:31,781 If you don't want 'pyhmmer.tests.data.hmms.txt' to be distributed and are 2023-09-19T00:42:31,782 already explicitly excluding 'pyhmmer.tests.data.hmms.txt' via 2023-09-19T00:42:31,806 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-19T00:42:31,815 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-19T00:42:31,816 combination with a more fine grained `package-data` configuration. 2023-09-19T00:42:31,817 You can read more about "package data files" on setuptools documentation page: 2023-09-19T00:42:31,817 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-19T00:42:31,819 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-19T00:42:31,819 even if it does not contain any `.py` files. 2023-09-19T00:42:31,820 On the other hand, currently there is no concept of package data 2023-09-19T00:42:31,820 directory, all directories are treated like packages. 2023-09-19T00:42:31,820 ******************************************************************************** 2023-09-19T00:42:31,821 !! 2023-09-19T00:42:31,822 check.warn(importable) 2023-09-19T00:42:31,822 /tmp/pip-build-env-9c_vqy50/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data.hmms.txt2' is absent from the `packages` configuration. 2023-09-19T00:42:31,823 !! 2023-09-19T00:42:31,824 ******************************************************************************** 2023-09-19T00:42:31,824 ############################ 2023-09-19T00:42:31,825 # Package would be ignored # 2023-09-19T00:42:31,825 ############################ 2023-09-19T00:42:31,826 Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package[^1], 2023-09-19T00:42:31,826 but it is absent from setuptools' `packages` configuration. 2023-09-19T00:42:31,827 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-19T00:42:31,828 package, please make sure that 'pyhmmer.tests.data.hmms.txt2' is explicitly added 2023-09-19T00:42:31,828 to the `packages` configuration field. 2023-09-19T00:42:31,829 Alternatively, you can also rely on setuptools' discovery methods 2023-09-19T00:42:31,829 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-19T00:42:31,830 instead of `find_packages(...)`/`find:`). 2023-09-19T00:42:31,831 You can read more about "package discovery" on setuptools documentation page: 2023-09-19T00:42:31,832 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-19T00:42:31,833 If you don't want 'pyhmmer.tests.data.hmms.txt2' to be distributed and are 2023-09-19T00:42:31,833 already explicitly excluding 'pyhmmer.tests.data.hmms.txt2' via 2023-09-19T00:42:31,834 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-19T00:42:31,834 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-19T00:42:31,835 combination with a more fine grained `package-data` configuration. 2023-09-19T00:42:31,837 You can read more about "package data files" on setuptools documentation page: 2023-09-19T00:42:31,838 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-19T00:42:31,840 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-19T00:42:31,840 even if it does not contain any `.py` files. 2023-09-19T00:42:31,841 On the other hand, currently there is no concept of package data 2023-09-19T00:42:31,841 directory, all directories are treated like packages. 2023-09-19T00:42:31,842 ******************************************************************************** 2023-09-19T00:42:31,843 !! 2023-09-19T00:42:31,843 check.warn(importable) 2023-09-19T00:42:31,844 /tmp/pip-build-env-9c_vqy50/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data.jackhmmer' is absent from the `packages` configuration. 2023-09-19T00:42:31,845 !! 2023-09-19T00:42:31,845 ******************************************************************************** 2023-09-19T00:42:31,846 ############################ 2023-09-19T00:42:31,846 # Package would be ignored # 2023-09-19T00:42:31,847 ############################ 2023-09-19T00:42:31,847 Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package[^1], 2023-09-19T00:42:31,847 but it is absent from setuptools' `packages` configuration. 2023-09-19T00:42:31,849 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-19T00:42:31,849 package, please make sure that 'pyhmmer.tests.data.jackhmmer' is explicitly added 2023-09-19T00:42:31,849 to the `packages` configuration field. 2023-09-19T00:42:31,850 Alternatively, you can also rely on setuptools' discovery methods 2023-09-19T00:42:31,851 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-19T00:42:31,852 instead of `find_packages(...)`/`find:`). 2023-09-19T00:42:31,853 You can read more about "package discovery" on setuptools documentation page: 2023-09-19T00:42:31,854 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-19T00:42:31,855 If you don't want 'pyhmmer.tests.data.jackhmmer' to be distributed and are 2023-09-19T00:42:31,855 already explicitly excluding 'pyhmmer.tests.data.jackhmmer' via 2023-09-19T00:42:31,856 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-19T00:42:31,856 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-19T00:42:31,857 combination with a more fine grained `package-data` configuration. 2023-09-19T00:42:31,858 You can read more about "package data files" on setuptools documentation page: 2023-09-19T00:42:31,859 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-19T00:42:31,862 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-19T00:42:31,863 even if it does not contain any `.py` files. 2023-09-19T00:42:31,867 On the other hand, currently there is no concept of package data 2023-09-19T00:42:31,872 directory, all directories are treated like packages. 2023-09-19T00:42:31,872 ******************************************************************************** 2023-09-19T00:42:31,873 !! 2023-09-19T00:42:31,874 check.warn(importable) 2023-09-19T00:42:31,874 /tmp/pip-build-env-9c_vqy50/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data.msa' is absent from the `packages` configuration. 2023-09-19T00:42:31,875 !! 2023-09-19T00:42:31,876 ******************************************************************************** 2023-09-19T00:42:31,877 ############################ 2023-09-19T00:42:31,877 # Package would be ignored # 2023-09-19T00:42:31,878 ############################ 2023-09-19T00:42:31,878 Python recognizes 'pyhmmer.tests.data.msa' as an importable package[^1], 2023-09-19T00:42:31,879 but it is absent from setuptools' `packages` configuration. 2023-09-19T00:42:31,880 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-19T00:42:31,881 package, please make sure that 'pyhmmer.tests.data.msa' is explicitly added 2023-09-19T00:42:31,881 to the `packages` configuration field. 2023-09-19T00:42:31,883 Alternatively, you can also rely on setuptools' discovery methods 2023-09-19T00:42:31,883 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-19T00:42:31,884 instead of `find_packages(...)`/`find:`). 2023-09-19T00:42:31,885 You can read more about "package discovery" on setuptools documentation page: 2023-09-19T00:42:31,886 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-19T00:42:31,887 If you don't want 'pyhmmer.tests.data.msa' to be distributed and are 2023-09-19T00:42:31,893 already explicitly excluding 'pyhmmer.tests.data.msa' via 2023-09-19T00:42:31,904 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-19T00:42:31,913 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-19T00:42:31,914 combination with a more fine grained `package-data` configuration. 2023-09-19T00:42:31,915 You can read more about "package data files" on setuptools documentation page: 2023-09-19T00:42:31,916 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-19T00:42:31,922 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-19T00:42:31,923 even if it does not contain any `.py` files. 2023-09-19T00:42:31,923 On the other hand, currently there is no concept of package data 2023-09-19T00:42:31,924 directory, all directories are treated like packages. 2023-09-19T00:42:31,924 ******************************************************************************** 2023-09-19T00:42:31,925 !! 2023-09-19T00:42:31,926 check.warn(importable) 2023-09-19T00:42:31,926 /tmp/pip-build-env-9c_vqy50/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data.seqs' is absent from the `packages` configuration. 2023-09-19T00:42:31,927 !! 2023-09-19T00:42:31,928 ******************************************************************************** 2023-09-19T00:42:31,928 ############################ 2023-09-19T00:42:31,934 # Package would be ignored # 2023-09-19T00:42:31,942 ############################ 2023-09-19T00:42:31,947 Python recognizes 'pyhmmer.tests.data.seqs' as an importable package[^1], 2023-09-19T00:42:31,956 but it is absent from setuptools' `packages` configuration. 2023-09-19T00:42:31,970 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-19T00:42:31,971 package, please make sure that 'pyhmmer.tests.data.seqs' is explicitly added 2023-09-19T00:42:31,972 to the `packages` configuration field. 2023-09-19T00:42:31,973 Alternatively, you can also rely on setuptools' discovery methods 2023-09-19T00:42:31,973 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-19T00:42:31,974 instead of `find_packages(...)`/`find:`). 2023-09-19T00:42:31,977 You can read more about "package discovery" on setuptools documentation page: 2023-09-19T00:42:31,978 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-19T00:42:31,979 If you don't want 'pyhmmer.tests.data.seqs' to be distributed and are 2023-09-19T00:42:31,980 already explicitly excluding 'pyhmmer.tests.data.seqs' via 2023-09-19T00:42:31,980 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-19T00:42:31,981 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-19T00:42:31,982 combination with a more fine grained `package-data` configuration. 2023-09-19T00:42:31,983 You can read more about "package data files" on setuptools documentation page: 2023-09-19T00:42:31,984 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-19T00:42:31,985 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-19T00:42:31,987 even if it does not contain any `.py` files. 2023-09-19T00:42:31,987 On the other hand, currently there is no concept of package data 2023-09-19T00:42:31,988 directory, all directories are treated like packages. 2023-09-19T00:42:31,988 ******************************************************************************** 2023-09-19T00:42:31,989 !! 2023-09-19T00:42:31,989 check.warn(importable) 2023-09-19T00:42:31,990 /tmp/pip-build-env-9c_vqy50/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data.tables' is absent from the `packages` configuration. 2023-09-19T00:42:31,992 !! 2023-09-19T00:42:31,993 ******************************************************************************** 2023-09-19T00:42:31,993 ############################ 2023-09-19T00:42:31,994 # Package would be ignored # 2023-09-19T00:42:31,994 ############################ 2023-09-19T00:42:31,995 Python recognizes 'pyhmmer.tests.data.tables' as an importable package[^1], 2023-09-19T00:42:31,996 but it is absent from setuptools' `packages` configuration. 2023-09-19T00:42:31,998 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-19T00:42:31,998 package, please make sure that 'pyhmmer.tests.data.tables' is explicitly added 2023-09-19T00:42:31,998 to the `packages` configuration field. 2023-09-19T00:42:31,999 Alternatively, you can also rely on setuptools' discovery methods 2023-09-19T00:42:32,000 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-19T00:42:32,002 instead of `find_packages(...)`/`find:`). 2023-09-19T00:42:32,006 You can read more about "package discovery" on setuptools documentation page: 2023-09-19T00:42:32,006 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-19T00:42:32,008 If you don't want 'pyhmmer.tests.data.tables' to be distributed and are 2023-09-19T00:42:32,008 already explicitly excluding 'pyhmmer.tests.data.tables' via 2023-09-19T00:42:32,009 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-19T00:42:32,010 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-19T00:42:32,010 combination with a more fine grained `package-data` configuration. 2023-09-19T00:42:32,012 You can read more about "package data files" on setuptools documentation page: 2023-09-19T00:42:32,013 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-19T00:42:32,015 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-19T00:42:32,015 even if it does not contain any `.py` files. 2023-09-19T00:42:32,016 On the other hand, currently there is no concept of package data 2023-09-19T00:42:32,017 directory, all directories are treated like packages. 2023-09-19T00:42:32,017 ******************************************************************************** 2023-09-19T00:42:32,018 !! 2023-09-19T00:42:32,019 check.warn(importable) 2023-09-19T00:42:32,019 /tmp/pip-build-env-9c_vqy50/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.test_easel' is absent from the `packages` configuration. 2023-09-19T00:42:32,020 !! 2023-09-19T00:42:32,021 ******************************************************************************** 2023-09-19T00:42:32,022 ############################ 2023-09-19T00:42:32,023 # Package would be ignored # 2023-09-19T00:42:32,023 ############################ 2023-09-19T00:42:32,024 Python recognizes 'pyhmmer.tests.test_easel' as an importable package[^1], 2023-09-19T00:42:32,025 but it is absent from setuptools' `packages` configuration. 2023-09-19T00:42:32,026 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-19T00:42:32,026 package, please make sure that 'pyhmmer.tests.test_easel' is explicitly added 2023-09-19T00:42:32,027 to the `packages` configuration field. 2023-09-19T00:42:32,027 Alternatively, you can also rely on setuptools' discovery methods 2023-09-19T00:42:32,028 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-19T00:42:32,028 instead of `find_packages(...)`/`find:`). 2023-09-19T00:42:32,030 You can read more about "package discovery" on setuptools documentation page: 2023-09-19T00:42:32,030 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-19T00:42:32,031 If you don't want 'pyhmmer.tests.test_easel' to be distributed and are 2023-09-19T00:42:32,032 already explicitly excluding 'pyhmmer.tests.test_easel' via 2023-09-19T00:42:32,032 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-19T00:42:32,033 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-19T00:42:32,033 combination with a more fine grained `package-data` configuration. 2023-09-19T00:42:32,034 You can read more about "package data files" on setuptools documentation page: 2023-09-19T00:42:32,035 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-19T00:42:32,037 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-19T00:42:32,037 even if it does not contain any `.py` files. 2023-09-19T00:42:32,037 On the other hand, currently there is no concept of package data 2023-09-19T00:42:32,038 directory, all directories are treated like packages. 2023-09-19T00:42:32,039 ******************************************************************************** 2023-09-19T00:42:32,040 !! 2023-09-19T00:42:32,041 check.warn(importable) 2023-09-19T00:42:32,041 /tmp/pip-build-env-9c_vqy50/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.test_plan7' is absent from the `packages` configuration. 2023-09-19T00:42:32,042 !! 2023-09-19T00:42:32,043 ******************************************************************************** 2023-09-19T00:42:32,044 ############################ 2023-09-19T00:42:32,044 # Package would be ignored # 2023-09-19T00:42:32,045 ############################ 2023-09-19T00:42:32,045 Python recognizes 'pyhmmer.tests.test_plan7' as an importable package[^1], 2023-09-19T00:42:32,046 but it is absent from setuptools' `packages` configuration. 2023-09-19T00:42:32,047 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-19T00:42:32,047 package, please make sure that 'pyhmmer.tests.test_plan7' is explicitly added 2023-09-19T00:42:32,048 to the `packages` configuration field. 2023-09-19T00:42:32,049 Alternatively, you can also rely on setuptools' discovery methods 2023-09-19T00:42:32,050 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-19T00:42:32,050 instead of `find_packages(...)`/`find:`). 2023-09-19T00:42:32,052 You can read more about "package discovery" on setuptools documentation page: 2023-09-19T00:42:32,085 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-19T00:42:32,137 If you don't want 'pyhmmer.tests.test_plan7' to be distributed and are 2023-09-19T00:42:32,140 already explicitly excluding 'pyhmmer.tests.test_plan7' via 2023-09-19T00:42:32,141 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-19T00:42:32,143 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-19T00:42:32,146 combination with a more fine grained `package-data` configuration. 2023-09-19T00:42:32,148 You can read more about "package data files" on setuptools documentation page: 2023-09-19T00:42:32,149 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-19T00:42:32,151 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-19T00:42:32,151 even if it does not contain any `.py` files. 2023-09-19T00:42:32,152 On the other hand, currently there is no concept of package data 2023-09-19T00:42:32,154 directory, all directories are treated like packages. 2023-09-19T00:42:32,155 ******************************************************************************** 2023-09-19T00:42:32,156 !! 2023-09-19T00:42:32,156 check.warn(importable) 2023-09-19T00:42:32,157 copying pyhmmer/daemon.pxd -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-09-19T00:42:32,159 copying pyhmmer/daemon.pyi -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-09-19T00:42:32,159 copying pyhmmer/daemon.pyx -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-09-19T00:42:32,160 copying pyhmmer/easel.pxd -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-09-19T00:42:32,160 copying pyhmmer/easel.pyi -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-09-19T00:42:32,161 copying pyhmmer/easel.pyx -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-09-19T00:42:32,161 copying pyhmmer/errors.pyi -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-09-19T00:42:32,162 copying pyhmmer/errors.pyx -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-09-19T00:42:32,163 copying pyhmmer/exceptions.pxi -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-09-19T00:42:32,163 copying pyhmmer/plan7.pxd -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-09-19T00:42:32,164 copying pyhmmer/plan7.pyi -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-09-19T00:42:32,164 copying pyhmmer/plan7.pyx -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-09-19T00:42:32,165 copying pyhmmer/py.typed -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-09-19T00:42:32,166 creating build/lib.linux-armv7l-cpython-311/pyhmmer/fileobj 2023-09-19T00:42:32,166 copying pyhmmer/fileobj/bsd.pxi -> build/lib.linux-armv7l-cpython-311/pyhmmer/fileobj 2023-09-19T00:42:32,167 copying pyhmmer/fileobj/linux.pxi -> build/lib.linux-armv7l-cpython-311/pyhmmer/fileobj 2023-09-19T00:42:32,168 creating build/lib.linux-armv7l-cpython-311/pyhmmer/reexports 2023-09-19T00:42:32,168 copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-armv7l-cpython-311/pyhmmer/reexports 2023-09-19T00:42:32,169 copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-armv7l-cpython-311/pyhmmer/reexports 2023-09-19T00:42:32,170 copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-armv7l-cpython-311/pyhmmer/reexports 2023-09-19T00:42:32,170 copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-armv7l-cpython-311/pyhmmer/reexports 2023-09-19T00:42:32,171 copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-armv7l-cpython-311/pyhmmer/reexports 2023-09-19T00:42:32,171 copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-armv7l-cpython-311/pyhmmer/reexports 2023-09-19T00:42:32,172 copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-armv7l-cpython-311/pyhmmer/reexports 2023-09-19T00:42:32,172 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests 2023-09-19T00:42:32,173 copying pyhmmer/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests 2023-09-19T00:42:32,174 copying pyhmmer/tests/requirements.txt -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests 2023-09-19T00:42:32,174 copying pyhmmer/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests 2023-09-19T00:42:32,175 copying pyhmmer/tests/test_errors.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests 2023-09-19T00:42:32,176 copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests 2023-09-19T00:42:32,177 copying pyhmmer/tests/utils.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests 2023-09-19T00:42:32,177 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data 2023-09-19T00:42:32,178 copying pyhmmer/tests/data/README.md -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data 2023-09-19T00:42:32,178 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms 2023-09-19T00:42:32,178 copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms 2023-09-19T00:42:32,179 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/bin 2023-09-19T00:42:32,179 copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/bin 2023-09-19T00:42:32,180 copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/bin 2023-09-19T00:42:32,180 copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/bin 2023-09-19T00:42:32,181 copying pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/bin 2023-09-19T00:42:32,181 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-09-19T00:42:32,182 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-09-19T00:42:32,182 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-09-19T00:42:32,183 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-09-19T00:42:32,183 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-09-19T00:42:32,185 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-09-19T00:42:32,187 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-09-19T00:42:32,201 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-09-19T00:42:32,226 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-09-19T00:42:32,242 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-09-19T00:42:32,244 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-09-19T00:42:32,245 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-09-19T00:42:32,245 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-09-19T00:42:32,246 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-09-19T00:42:32,246 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-09-19T00:42:32,247 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-09-19T00:42:32,247 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-09-19T00:42:32,248 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt 2023-09-19T00:42:32,248 copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt 2023-09-19T00:42:32,249 copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt 2023-09-19T00:42:32,249 copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt 2023-09-19T00:42:32,249 copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt 2023-09-19T00:42:32,250 copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt 2023-09-19T00:42:32,251 copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt 2023-09-19T00:42:32,251 copying pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt 2023-09-19T00:42:32,251 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt2 2023-09-19T00:42:32,252 copying pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt2 2023-09-19T00:42:32,252 copying pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt2 2023-09-19T00:42:32,253 copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt2 2023-09-19T00:42:32,253 copying pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt2 2023-09-19T00:42:32,253 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer 2023-09-19T00:42:32,254 copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer 2023-09-19T00:42:32,254 copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer 2023-09-19T00:42:32,255 copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer 2023-09-19T00:42:32,255 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/msa 2023-09-19T00:42:32,256 copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/msa 2023-09-19T00:42:32,257 copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/msa 2023-09-19T00:42:32,260 copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/msa 2023-09-19T00:42:32,262 copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/msa 2023-09-19T00:42:32,265 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs 2023-09-19T00:42:32,265 copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs 2023-09-19T00:42:32,288 copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs 2023-09-19T00:42:32,295 copying pyhmmer/tests/data/seqs/CP000560.2.fna -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs 2023-09-19T00:42:32,354 copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs 2023-09-19T00:42:32,358 copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs 2023-09-19T00:42:32,361 copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs 2023-09-19T00:42:32,364 copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs 2023-09-19T00:42:32,365 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables 2023-09-19T00:42:32,366 copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables 2023-09-19T00:42:32,369 copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables 2023-09-19T00:42:32,372 copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables 2023-09-19T00:42:32,374 copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables 2023-09-19T00:42:32,376 copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables 2023-09-19T00:42:32,378 copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables 2023-09-19T00:42:32,380 copying pyhmmer/tests/data/tables/t2pks.domtbl -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables 2023-09-19T00:42:32,383 copying pyhmmer/tests/data/tables/t2pks.tbl -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables 2023-09-19T00:42:32,386 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-09-19T00:42:32,387 copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-09-19T00:42:32,389 copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-09-19T00:42:32,391 copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-09-19T00:42:32,393 copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-09-19T00:42:32,394 copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-09-19T00:42:32,397 copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-09-19T00:42:32,399 copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-09-19T00:42:32,402 copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-09-19T00:42:32,404 copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-09-19T00:42:32,406 copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-09-19T00:42:32,409 copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-09-19T00:42:32,411 copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-09-19T00:42:32,413 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-09-19T00:42:32,414 copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-09-19T00:42:32,416 copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-09-19T00:42:32,418 copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-09-19T00:42:32,420 copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-09-19T00:42:32,422 copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-09-19T00:42:32,425 copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-09-19T00:42:32,427 copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-09-19T00:42:32,429 copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-09-19T00:42:32,431 copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-09-19T00:42:32,433 copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-09-19T00:42:32,436 copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-09-19T00:42:32,437 copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-09-19T00:42:32,440 running build_clib 2023-09-19T00:42:32,449 creating build/temp.linux-armv7l-cpython-311 2023-09-19T00:42:32,450 generating "divsufsort.h" for divsufsort library 2023-09-19T00:42:32,450 copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-armv7l-cpython-311/divsufsort.h 2023-09-19T00:42:32,452 generating "esl_config.h" for easel library 2023-09-19T00:42:32,531 checking whether can be included... yes 2023-09-19T00:42:32,619 checking whether can be included... yes 2023-09-19T00:42:32,689 checking whether can be included... yes 2023-09-19T00:42:32,760 checking whether can be included... yes 2023-09-19T00:42:32,829 checking whether can be included... yes 2023-09-19T00:42:32,892 checking whether can be included... yes 2023-09-19T00:42:32,960 checking whether can be included... yes 2023-09-19T00:42:33,057 checking whether can be included... yes 2023-09-19T00:42:33,140 checking whether can be included... yes 2023-09-19T00:42:33,206 checking whether can be included... yes 2023-09-19T00:42:33,298 checking whether can be included... yes 2023-09-19T00:42:33,389 checking whether can be included... yes 2023-09-19T00:42:33,436 checking whether can be included... no 2023-09-19T00:42:33,483 checking whether function 'aligned_alloc' is available... no 2023-09-19T00:42:33,530 checking whether function 'erfc' is available... no 2023-09-19T00:42:33,703 checking whether function 'getpid' is available... yes 2023-09-19T00:42:33,913 checking whether function '_mm_malloc' is available... no 2023-09-19T00:42:34,082 checking whether function 'popen' is available... yes 2023-09-19T00:42:34,252 checking whether function 'posix_memalign' is available... yes 2023-09-19T00:42:34,423 checking whether function 'strcasecmp' is available... yes 2023-09-19T00:42:34,596 checking whether function 'strsep' is available... yes 2023-09-19T00:42:34,796 checking whether function 'sysconf' is available... yes 2023-09-19T00:42:34,977 checking whether function 'sysctl' is available... no 2023-09-19T00:42:35,153 checking whether function 'times' is available... yes 2023-09-19T00:42:35,325 checking whether function 'fseeko' is available... yes 2023-09-19T00:42:35,327 generating "p7_config.h" for hmmer library 2023-09-19T00:42:35,392 checking whether can be included... yes 2023-09-19T00:42:35,482 checking whether can be included... yes 2023-09-19T00:42:35,553 checking whether can be included... yes 2023-09-19T00:42:35,627 checking whether can be included... yes 2023-09-19T00:42:35,702 checking whether can be included... yes 2023-09-19T00:42:35,792 checking whether can be included... yes 2023-09-19T00:42:35,886 checking whether can be included... yes 2023-09-19T00:42:35,932 checking whether can be included... no 2023-09-19T00:42:36,104 checking whether function 'mkstemp' is available... yes 2023-09-19T00:42:36,307 checking whether function 'popen' is available... yes 2023-09-19T00:42:36,489 checking whether function 'putenv' is available... yes 2023-09-19T00:42:36,659 checking whether function 'strcasecmp' is available... yes 2023-09-19T00:42:36,826 checking whether function 'strsep' is available... yes 2023-09-19T00:42:36,995 checking whether function 'times' is available... yes 2023-09-19T00:42:37,199 checking whether function 'getpid' is available... yes 2023-09-19T00:42:37,368 checking whether function 'sysctl' is available... no 2023-09-19T00:42:37,540 checking whether function 'sysconf' is available... yes 2023-09-19T00:42:37,710 checking whether function 'getcwd' is available... yes 2023-09-19T00:42:37,906 checking whether function 'chmod' is available... yes 2023-09-19T00:42:38,081 checking whether function 'stat' is available... yes 2023-09-19T00:42:38,253 checking whether function 'fstat' is available... yes 2023-09-19T00:42:38,301 checking whether function 'erfc' is available... no 2023-09-19T00:42:38,302 generating build/temp.linux-armv7l-cpython-311/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c 2023-09-19T00:42:38,310 generating build/temp.linux-armv7l-cpython-311/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c 2023-09-19T00:42:38,318 generating build/temp.linux-armv7l-cpython-311/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c 2023-09-19T00:42:38,328 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c 2023-09-19T00:42:38,329 creating build/temp.linux-armv7l-cpython-311/vendor 2023-09-19T00:42:38,329 creating build/temp.linux-armv7l-cpython-311/vendor/hmmer 2023-09-19T00:42:38,330 creating build/temp.linux-armv7l-cpython-311/vendor/hmmer/libdivsufsort 2023-09-19T00:42:38,330 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/libdivsufsort/divsufsort.o 2023-09-19T00:42:42,891 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-311/libdivsufsort.a build/temp.linux-armv7l-cpython-311/vendor/hmmer/libdivsufsort/divsufsort.o 2023-09-19T00:42:42,910 generating build/temp.linux-armv7l-cpython-311/libeasel.a from vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_cpu.c, vendor/easel/esl_huffman.c, vendor/easel/esl_msa.c, vendor/easel/esl_fileparser.c, vendor/easel/esl_sqio.c, vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_buffer.c, vendor/easel/esl_randomseq.c, vendor/easel/esl_threads.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_avx512.c, vendor/easel/esl_graph.c, vendor/easel/esl_avx.c, vendor/easel/esl_arr2.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_random.c, vendor/easel/esl_weibull.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_gencode.c, vendor/easel/esl_getopts.c, vendor/easel/esl_msafile.c, vendor/easel/esl_sse.c, vendor/easel/esl_ssi.c, vendor/easel/esl_stopwatch.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_alloc.c, vendor/easel/esl_rand64.c, vendor/easel/esl_red_black.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_sq.c, vendor/easel/esl_ratematrix.c, vendor/easel/easel.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_mem.c, vendor/easel/esl_swat.c, vendor/easel/esl_stack.c, vendor/easel/interface_lapack.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_normal.c, vendor/easel/esl_keyhash.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_stats.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_mpi.c, vendor/easel/esl_arr3.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_exponential.c, vendor/easel/esl_paml.c, vendor/easel/esl_histogram.c, vendor/easel/esl_bitfield.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_gev.c, vendor/easel/esl_gamma.c, vendor/easel/esl_recorder.c, vendor/easel/esl_vmx.c, vendor/easel/esl_hmm.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_cluster.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_hyperexp.c, vendor/easel/esl_wuss.c, vendor/easel/esl_neon.c, vendor/easel/esl_varint.c, vendor/easel/esl_distance.c, vendor/easel/esl_heap.c, vendor/easel/esl_scorematrix.c, vendor/easel/esl_json.c, vendor/easel/esl_regexp.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_composition.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_tree.c, vendor/easel/interface_gsl.c, vendor/easel/esl_msashuffle.c, build/temp.linux-armv7l-cpython-311/esl_sqio_ascii.c 2023-09-19T00:42:42,914 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c 2023-09-19T00:42:42,915 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_random.o from vendor/easel/esl_random.c 2023-09-19T00:42:42,916 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c 2023-09-19T00:42:42,916 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c 2023-09-19T00:42:42,917 creating build/temp.linux-armv7l-cpython-311/vendor/easel 2023-09-19T00:42:42,917 creating build/temp.linux-armv7l-cpython-311/vendor/easel 2023-09-19T00:42:42,918 creating build/temp.linux-armv7l-cpython-311/vendor/easel 2023-09-19T00:42:42,918 creating build/temp.linux-armv7l-cpython-311/vendor/easel 2023-09-19T00:42:42,919 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_random.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_random.o 2023-09-19T00:42:42,919 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_fileparser.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_fileparser.o 2023-09-19T00:42:42,920 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sqio_ncbi.o 2023-09-19T00:42:42,923 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_phylip.o 2023-09-19T00:42:43,115 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’: 2023-09-19T00:42:43,116 vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:42:43,117 216 | if (htobe32(info[1]) != dbtype) status = eslEUNIMPLEMENTED; 2023-09-19T00:42:43,118 | ^~ 2023-09-19T00:42:43,119 vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:42:43,120 226 | if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2023-09-19T00:42:43,121 | ^~ 2023-09-19T00:42:43,122 vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:42:43,123 233 | if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2023-09-19T00:42:43,124 | ^~ 2023-09-19T00:42:43,133 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’: 2023-09-19T00:42:43,134 vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,135 758 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-09-19T00:42:43,136 | ^~ 2023-09-19T00:42:43,137 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’: 2023-09-19T00:42:43,138 vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,139 809 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-09-19T00:42:43,140 | ^~ 2023-09-19T00:42:43,141 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’: 2023-09-19T00:42:43,142 vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,143 860 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-09-19T00:42:43,143 | ^~ 2023-09-19T00:42:43,144 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’: 2023-09-19T00:42:43,145 vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:42:43,146 1036 | if (status != eslOK || nres != W) { 2023-09-19T00:42:43,146 | ^~ 2023-09-19T00:42:43,147 vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,148 1059 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-09-19T00:42:43,149 | ^~ 2023-09-19T00:42:43,152 vendor/easel/esl_random.c: In function ‘gamma_integer’: 2023-09-19T00:42:43,153 vendor/easel/esl_random.c:652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-19T00:42:43,154 652 | for (i = 0; i < a; i++) 2023-09-19T00:42:43,155 | ^ 2023-09-19T00:42:43,156 vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’: 2023-09-19T00:42:43,157 vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,158 1421 | if (volume < 0 || volume > ncbi->volumes) return eslEINVAL; 2023-09-19T00:42:43,159 | ^ 2023-09-19T00:42:43,162 vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:42:43,163 1458 | if (htobe32(info[1]) != dbtype) status = eslEFORMAT; 2023-09-19T00:42:43,164 | ^~ 2023-09-19T00:42:43,165 vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’: 2023-09-19T00:42:43,167 vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,168 1513 | if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL; 2023-09-19T00:42:43,169 | ^ 2023-09-19T00:42:43,170 vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:42:43,171 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-09-19T00:42:43,172 | ^~ 2023-09-19T00:42:43,172 vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,173 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-09-19T00:42:43,174 | ^ 2023-09-19T00:42:43,175 vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,176 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-09-19T00:42:43,177 | ^ 2023-09-19T00:42:43,178 vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,179 1524 | if (inx < volume->start_seq || inx > volume->end_seq) { 2023-09-19T00:42:43,180 | ^ 2023-09-19T00:42:43,181 vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,182 1524 | if (inx < volume->start_seq || inx > volume->end_seq) { 2023-09-19T00:42:43,183 | ^ 2023-09-19T00:42:43,183 vendor/easel/esl_sqio_ncbi.c:1526:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,184 1526 | for (cnt = 0; cnt < ncbi->volumes; ++cnt) { 2023-09-19T00:42:43,185 | ^ 2023-09-19T00:42:43,186 vendor/easel/esl_sqio_ncbi.c:1527:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,187 1527 | if (inx < volume->end_seq) break; 2023-09-19T00:42:43,187 | ^ 2023-09-19T00:42:43,188 vendor/easel/esl_sqio_ncbi.c:1532:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,189 1532 | if (cnt >= ncbi->volumes) return eslFAIL; 2023-09-19T00:42:43,190 | ^~ 2023-09-19T00:42:43,190 vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:42:43,191 1539 | if (ncbi->index_start == -1 || inx > end) { 2023-09-19T00:42:43,192 | ^~ 2023-09-19T00:42:43,193 vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,194 1539 | if (ncbi->index_start == -1 || inx > end) { 2023-09-19T00:42:43,195 | ^ 2023-09-19T00:42:43,196 vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:42:43,197 1564 | if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-09-19T00:42:43,198 | ^~ 2023-09-19T00:42:43,199 vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:42:43,200 1572 | if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-09-19T00:42:43,201 | ^~ 2023-09-19T00:42:43,201 vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:42:43,202 1581 | if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-09-19T00:42:43,203 | ^~ 2023-09-19T00:42:43,204 vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’: 2023-09-19T00:42:43,206 vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,207 1623 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-09-19T00:42:43,208 | ^~ 2023-09-19T00:42:43,209 vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:42:43,210 1633 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-09-19T00:42:43,210 | ^~ 2023-09-19T00:42:43,211 vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:42:43,212 1641 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-09-19T00:42:43,213 | ^~ 2023-09-19T00:42:43,214 vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’: 2023-09-19T00:42:43,214 vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,215 1690 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-09-19T00:42:43,216 | ^~ 2023-09-19T00:42:43,217 vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:42:43,218 1701 | if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-09-19T00:42:43,218 | ^~ 2023-09-19T00:42:43,219 vendor/easel/esl_sqio_ncbi.c:1754:33: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-19T00:42:43,220 1754 | if (ncbi->seq_apos - sq->doff < size) { 2023-09-19T00:42:43,232 | ^ 2023-09-19T00:42:43,233 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’: 2023-09-19T00:42:43,234 vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,235 1831 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-09-19T00:42:43,236 | ^~ 2023-09-19T00:42:43,237 vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:42:43,238 1856 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-09-19T00:42:43,239 | ^~ 2023-09-19T00:42:43,240 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’: 2023-09-19T00:42:43,241 vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,242 2005 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-09-19T00:42:43,243 | ^~ 2023-09-19T00:42:43,244 vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:42:43,245 2047 | if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT; 2023-09-19T00:42:43,246 | ^~ 2023-09-19T00:42:43,247 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’: 2023-09-19T00:42:43,248 vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,249 2178 | for (x = 0; x < strlen(ncbisym); ++x) { 2023-09-19T00:42:43,250 | ^ 2023-09-19T00:42:43,250 vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,251 2179 | for (y = 0; y < strlen(abc->sym); ++y) { 2023-09-19T00:42:43,252 | ^ 2023-09-19T00:42:43,253 vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,254 2187 | if (y >= strlen(abc->sym)) return eslEFORMAT; 2023-09-19T00:42:43,254 | ^~ 2023-09-19T00:42:43,255 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’: 2023-09-19T00:42:43,256 vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,256 2226 | for (x = 0; x < strlen(ncbisym); ++x) { 2023-09-19T00:42:43,257 | ^ 2023-09-19T00:42:43,258 vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,272 2227 | for (y = 0; y < strlen(abc->sym); ++y) { 2023-09-19T00:42:43,273 | ^ 2023-09-19T00:42:43,274 vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:43,275 2235 | if (y >= strlen(abc->sym)) return eslEFORMAT; 2023-09-19T00:42:43,275 | ^~ 2023-09-19T00:42:43,276 vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’: 2023-09-19T00:42:43,277 vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:42:43,278 2463 | if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT; 2023-09-19T00:42:43,279 | ^~ 2023-09-19T00:42:43,507 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c 2023-09-19T00:42:43,508 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_sqio.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sqio.o 2023-09-19T00:42:44,005 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c 2023-09-19T00:42:44,006 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_weibull.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_weibull.o 2023-09-19T00:42:44,629 In function ‘phylip_check_interleaved’, 2023-09-19T00:42:44,632 inlined from ‘esl_msafile_phylip_CheckFileFormat’ at vendor/easel/esl_msafile_phylip.c:389:13: 2023-09-19T00:42:44,633 vendor/easel/esl_msafile_phylip.c:739:16: warning: ‘nres1’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-19T00:42:44,634 739 | if (nres1+nres2 == alen) break; 2023-09-19T00:42:44,634 | ~~~~~^~~~~~ 2023-09-19T00:42:44,635 vendor/easel/esl_msafile_phylip.c: In function ‘esl_msafile_phylip_CheckFileFormat’: 2023-09-19T00:42:44,636 vendor/easel/esl_msafile_phylip.c:687:13: note: ‘nres1’ was declared here 2023-09-19T00:42:44,637 687 | int nres1; 2023-09-19T00:42:44,638 | ^~~~~ 2023-09-19T00:42:44,640 vendor/easel/esl_msafile_phylip.c:683:20: warning: ‘ncols0’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-19T00:42:44,640 683 | int ncols, ncols0; 2023-09-19T00:42:44,641 | ^~~~~~ 2023-09-19T00:42:44,642 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c 2023-09-19T00:42:44,643 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_quicksort.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_quicksort.o 2023-09-19T00:42:44,693 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c 2023-09-19T00:42:44,694 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_clustal.o 2023-09-19T00:42:45,001 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c 2023-09-19T00:42:45,002 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_vectorops.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_vectorops.o 2023-09-19T00:42:45,200 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c 2023-09-19T00:42:45,201 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_psiblast.o 2023-09-19T00:42:45,346 vendor/easel/esl_msafile_clustal.c: In function ‘esl_msafile_clustal_Read’: 2023-09-19T00:42:45,347 vendor/easel/esl_msafile_clustal.c:248:12: warning: ‘block_seq_len’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-19T00:42:45,348 248 | if (seq_len != block_seq_len) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence end is misaligned"); 2023-09-19T00:42:45,349 | ^ 2023-09-19T00:42:45,350 vendor/easel/esl_msafile_clustal.c:203:30: note: ‘block_seq_len’ was declared here 2023-09-19T00:42:45,351 203 | esl_pos_t block_seq_start, block_seq_len; 2023-09-19T00:42:45,352 | ^~~~~~~~~~~~~ 2023-09-19T00:42:45,353 vendor/easel/esl_msafile_clustal.c:247:12: warning: ‘block_seq_start’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-19T00:42:45,354 247 | if (seq_start != block_seq_start) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence start is misaligned"); 2023-09-19T00:42:45,355 | ^ 2023-09-19T00:42:45,356 vendor/easel/esl_msafile_clustal.c:203:13: note: ‘block_seq_start’ was declared here 2023-09-19T00:42:45,356 203 | esl_pos_t block_seq_start, block_seq_len; 2023-09-19T00:42:45,357 | ^~~~~~~~~~~~~~~ 2023-09-19T00:42:45,830 vendor/easel/esl_msafile_psiblast.c: In function ‘esl_msafile_psiblast_Read’: 2023-09-19T00:42:45,831 vendor/easel/esl_msafile_psiblast.c:229:12: warning: ‘block_seq_len’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-19T00:42:45,833 229 | if (seq_len != block_seq_len) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence end is misaligned"); 2023-09-19T00:42:45,834 | ^ 2023-09-19T00:42:45,835 vendor/easel/esl_msafile_psiblast.c:195:30: note: ‘block_seq_len’ was declared here 2023-09-19T00:42:45,836 195 | esl_pos_t block_seq_start, block_seq_len; 2023-09-19T00:42:45,837 | ^~~~~~~~~~~~~ 2023-09-19T00:42:45,838 vendor/easel/esl_msafile_psiblast.c:228:12: warning: ‘block_seq_start’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-19T00:42:45,839 228 | if (seq_start != block_seq_start) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence start is misaligned"); 2023-09-19T00:42:45,839 | ^ 2023-09-19T00:42:45,840 vendor/easel/esl_msafile_psiblast.c:195:13: note: ‘block_seq_start’ was declared here 2023-09-19T00:42:45,841 195 | esl_pos_t block_seq_start, block_seq_len; 2023-09-19T00:42:45,842 | ^~~~~~~~~~~~~~~ 2023-09-19T00:42:46,408 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c 2023-09-19T00:42:46,409 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_buffer.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_buffer.o 2023-09-19T00:42:46,450 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c 2023-09-19T00:42:46,451 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_msafile2.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile2.o 2023-09-19T00:42:46,726 In file included from vendor/easel/esl_msafile2.c:26: 2023-09-19T00:42:46,727 vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’: 2023-09-19T00:42:46,728 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:46,729 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-09-19T00:42:46,730 | ^ 2023-09-19T00:42:46,731 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2023-09-19T00:42:46,732 630 | for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2023-09-19T00:42:46,733 | ^~~~~~~ 2023-09-19T00:42:46,734 vendor/easel/easel.h:417:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-09-19T00:42:46,735 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-09-19T00:42:46,736 | ^~~ 2023-09-19T00:42:46,737 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2023-09-19T00:42:46,738 630 | for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2023-09-19T00:42:46,739 | ^~~~~~~ 2023-09-19T00:42:46,740 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:46,741 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-09-19T00:42:46,742 | ^ 2023-09-19T00:42:46,743 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2023-09-19T00:42:46,744 639 | for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2023-09-19T00:42:46,745 | ^~~~~~~ 2023-09-19T00:42:46,746 vendor/easel/easel.h:417:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-09-19T00:42:46,747 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-09-19T00:42:46,748 | ^~~ 2023-09-19T00:42:46,749 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2023-09-19T00:42:46,750 639 | for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2023-09-19T00:42:46,751 | ^~~~~~~ 2023-09-19T00:42:48,082 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c 2023-09-19T00:42:48,082 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_gencode.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gencode.o 2023-09-19T00:42:48,390 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c 2023-09-19T00:42:48,390 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_randomseq.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_randomseq.o 2023-09-19T00:42:48,408 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c 2023-09-19T00:42:48,409 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_avx512.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_avx512.o 2023-09-19T00:42:48,524 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c 2023-09-19T00:42:48,525 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_graph.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_graph.o 2023-09-19T00:42:48,987 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c 2023-09-19T00:42:48,988 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_avx.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_avx.o 2023-09-19T00:42:49,102 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c 2023-09-19T00:42:49,103 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_arr2.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_arr2.o 2023-09-19T00:42:49,366 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c 2023-09-19T00:42:49,366 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_gumbel.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gumbel.o 2023-09-19T00:42:49,745 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c 2023-09-19T00:42:49,746 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_getopts.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_getopts.o 2023-09-19T00:42:49,981 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c 2023-09-19T00:42:49,982 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_cpu.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_cpu.o 2023-09-19T00:42:50,000 vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’: 2023-09-19T00:42:50,002 vendor/easel/esl_getopts.c:1308:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:50,003 1308 | if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */ 2023-09-19T00:42:50,004 | ^~ 2023-09-19T00:42:50,205 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c 2023-09-19T00:42:50,206 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_huffman.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_huffman.o 2023-09-19T00:42:50,277 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c 2023-09-19T00:42:50,278 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_msafile.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile.o 2023-09-19T00:42:50,806 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c 2023-09-19T00:42:50,807 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_threads.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_threads.o 2023-09-19T00:42:50,880 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c 2023-09-19T00:42:50,881 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_alloc.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_alloc.o 2023-09-19T00:42:51,110 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c 2023-09-19T00:42:51,111 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_rand64.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_rand64.o 2023-09-19T00:42:51,206 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c 2023-09-19T00:42:51,207 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_msa.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msa.o 2023-09-19T00:42:51,543 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c 2023-09-19T00:42:51,544 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_sse.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sse.o 2023-09-19T00:42:51,631 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c 2023-09-19T00:42:51,632 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_ssi.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_ssi.o 2023-09-19T00:42:51,821 vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’: 2023-09-19T00:42:51,822 vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-19T00:42:51,823 261 | if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; } 2023-09-19T00:42:51,824 | ^~ 2023-09-19T00:42:51,841 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’: 2023-09-19T00:42:51,842 vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:51,842 728 | if ((n+1) > ns->flen) ns->flen = n+1; 2023-09-19T00:42:51,843 | ^ 2023-09-19T00:42:51,849 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’: 2023-09-19T00:42:51,850 vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:51,850 862 | if (n > ns->plen) ns->plen = n; 2023-09-19T00:42:51,851 | ^ 2023-09-19T00:42:51,853 vendor/easel/esl_ssi.c:893:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-19T00:42:51,854 893 | for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++) 2023-09-19T00:42:51,855 | ^ 2023-09-19T00:42:51,855 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’: 2023-09-19T00:42:51,856 vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:42:51,857 941 | if (n > ns->slen) ns->slen = n; 2023-09-19T00:42:51,858 | ^ 2023-09-19T00:42:51,859 vendor/easel/esl_ssi.c:957:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-19T00:42:51,860 957 | for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) { 2023-09-19T00:42:51,861 | ^ 2023-09-19T00:42:51,870 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’: 2023-09-19T00:42:51,871 vendor/easel/esl_ssi.c:1149:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-19T00:42:51,872 1149 | for (i = 0; i < ns->nprimary; i++) 2023-09-19T00:42:51,873 | ^ 2023-09-19T00:42:51,874 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c 2023-09-19T00:42:51,874 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_red_black.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_red_black.o 2023-09-19T00:42:51,875 vendor/easel/esl_ssi.c:1167:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-19T00:42:51,876 1167 | for (i = 0; i < ns->nprimary; i++) 2023-09-19T00:42:51,877 | ^ 2023-09-19T00:42:51,878 vendor/easel/esl_ssi.c:1187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-19T00:42:51,879 1187 | for (i = 0; i < ns->nsecondary; i++) 2023-09-19T00:42:51,880 | ^ 2023-09-19T00:42:51,882 vendor/easel/esl_ssi.c:1204:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-19T00:42:51,883 1204 | for (i = 0; i < ns->nsecondary; i++) 2023-09-19T00:42:51,883 | ^ 2023-09-19T00:42:51,887 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’: 2023-09-19T00:42:51,889 vendor/easel/esl_ssi.c:1253:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-19T00:42:51,889 1253 | for (i = 0; i < ns->nprimary; i++) 2023-09-19T00:42:51,890 | ^ 2023-09-19T00:42:51,891 vendor/easel/esl_ssi.c:1259:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-19T00:42:51,892 1259 | for (i = 0; i < ns->nsecondary; i++) 2023-09-19T00:42:51,893 | ^ 2023-09-19T00:42:51,899 vendor/easel/esl_ssi.c: In function ‘activate_external_sort’: 2023-09-19T00:42:51,900 vendor/easel/esl_ssi.c:1351:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-19T00:42:51,901 1351 | for (i = 0; i < ns->nprimary; i++) { 2023-09-19T00:42:51,902 | ^ 2023-09-19T00:42:51,903 vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-19T00:42:51,904 1370 | for (i = 0; i < ns->nsecondary; i++) 2023-09-19T00:42:51,905 | ^ 2023-09-19T00:42:51,906 vendor/easel/esl_ssi.c:1376:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-19T00:42:51,906 1376 | for (i = 0; i < ns->nprimary; i++) free(ns->pkeys[i].key); 2023-09-19T00:42:51,907 | ^ 2023-09-19T00:42:51,908 vendor/easel/esl_ssi.c:1377:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-19T00:42:51,909 1377 | for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key); 2023-09-19T00:42:51,910 | ^ 2023-09-19T00:42:51,911 vendor/easel/esl_ssi.c:1378:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-19T00:42:51,912 1378 | for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey); 2023-09-19T00:42:51,913 | ^ 2023-09-19T00:42:51,955 generating build/temp.linux-armv7l-cpython-311/vendor/easel/easel.o from vendor/easel/easel.c 2023-09-19T00:42:51,956 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/easel.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/easel.o 2023-09-19T00:42:52,223 vendor/easel/easel.c: In function ‘esl_FileNewSuffix’: 2023-09-19T00:42:52,226 vendor/easel/easel.c:1807:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-09-19T00:42:52,227 1807 | nf = (lastdot == NULL)? strlen(filename) : lastdot-filename; 2023-09-19T00:42:52,228 | ^~~~~~~~~~~~~~~~ 2023-09-19T00:42:52,425 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c 2023-09-19T00:42:52,426 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_afa.o 2023-09-19T00:42:53,140 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c 2023-09-19T00:42:53,141 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_sq.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sq.o 2023-09-19T00:42:53,405 vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’: 2023-09-19T00:42:53,407 vendor/easel/esl_sq.c:1636:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘long long int’} [-Wsign-compare] 2023-09-19T00:42:53,408 1636 | for (pos = 0; pos < sq->n; pos++) 2023-09-19T00:42:53,408 | ^ 2023-09-19T00:42:53,409 vendor/easel/esl_sq.c:1645:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘long long int’} [-Wsign-compare] 2023-09-19T00:42:53,410 1645 | for (pos = 1; pos <= sq->n; pos++) 2023-09-19T00:42:53,411 | ^~ 2023-09-19T00:42:53,759 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c 2023-09-19T00:42:53,760 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_workqueue.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_workqueue.o 2023-09-19T00:42:53,833 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c 2023-09-19T00:42:53,834 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_mem.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mem.o 2023-09-19T00:42:54,095 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c 2023-09-19T00:42:54,096 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stopwatch.o 2023-09-19T00:42:54,294 vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function] 2023-09-19T00:42:54,295 15 | static double stopwatch_getRealTime(void); 2023-09-19T00:42:54,296 | ^~~~~~~~~~~~~~~~~~~~~ 2023-09-19T00:42:54,471 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c 2023-09-19T00:42:54,472 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_selex.o 2023-09-19T00:42:55,416 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c 2023-09-19T00:42:55,417 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_swat.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_swat.o 2023-09-19T00:42:55,827 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c 2023-09-19T00:42:55,828 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_stack.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stack.o 2023-09-19T00:42:56,358 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c 2023-09-19T00:42:56,359 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_ratematrix.o 2023-09-19T00:42:56,477 generating build/temp.linux-armv7l-cpython-311/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c 2023-09-19T00:42:56,478 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/interface_lapack.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/interface_lapack.o 2023-09-19T00:42:56,555 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c 2023-09-19T00:42:56,556 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_stockholm.o 2023-09-19T00:42:57,038 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c 2023-09-19T00:42:57,039 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mixdchlet.o 2023-09-19T00:42:57,076 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c 2023-09-19T00:42:57,077 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_mpi.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mpi.o 2023-09-19T00:42:57,251 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c 2023-09-19T00:42:57,252 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stretchexp.o 2023-09-19T00:42:57,295 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c 2023-09-19T00:42:57,296 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_arr3.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_arr3.o 2023-09-19T00:42:57,593 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c 2023-09-19T00:42:57,594 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_dmatrix.o 2023-09-19T00:42:57,889 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c 2023-09-19T00:42:57,890 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_msacluster.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msacluster.o 2023-09-19T00:42:58,231 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c 2023-09-19T00:42:58,232 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_a2m.o 2023-09-19T00:42:58,280 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c 2023-09-19T00:42:58,281 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_exponential.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_exponential.o 2023-09-19T00:42:58,783 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c 2023-09-19T00:42:58,784 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_paml.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_paml.o 2023-09-19T00:42:59,114 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c 2023-09-19T00:42:59,115 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_histogram.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_histogram.o 2023-09-19T00:42:59,344 vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’: 2023-09-19T00:42:59,345 vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-19T00:42:59,346 541 | if (rank > h->n) 2023-09-19T00:42:59,347 | ^ 2023-09-19T00:42:59,859 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c 2023-09-19T00:42:59,860 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_alphabet.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_alphabet.o 2023-09-19T00:43:00,057 vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’: 2023-09-19T00:43:00,058 vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:43:00,059 107 | if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp"); 2023-09-19T00:43:00,060 | ^~ 2023-09-19T00:43:00,085 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c 2023-09-19T00:43:00,086 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_gev.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gev.o 2023-09-19T00:43:00,421 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c 2023-09-19T00:43:00,421 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_normal.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_normal.o 2023-09-19T00:43:00,689 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c 2023-09-19T00:43:00,690 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_keyhash.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_keyhash.o 2023-09-19T00:43:00,783 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c 2023-09-19T00:43:00,784 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_gamma.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gamma.o 2023-09-19T00:43:00,884 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’: 2023-09-19T00:43:00,885 vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:00,886 94 | for (h = 0; h < kh->hashsize; h++) 2023-09-19T00:43:00,887 | ^ 2023-09-19T00:43:00,889 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’: 2023-09-19T00:43:00,890 vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:00,891 171 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-09-19T00:43:00,892 | ^ 2023-09-19T00:43:00,893 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’: 2023-09-19T00:43:00,894 vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:00,895 215 | for (h = 0; h < kh->hashsize; h++) 2023-09-19T00:43:00,896 | ^ 2023-09-19T00:43:00,901 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’: 2023-09-19T00:43:00,902 vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:00,903 310 | if (kh->nkeys > 3*kh->hashsize) 2023-09-19T00:43:00,904 | ^ 2023-09-19T00:43:00,907 vendor/easel/esl_keyhash.c: In function ‘keyhash_create’: 2023-09-19T00:43:00,909 vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:00,910 401 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-09-19T00:43:00,911 | ^ 2023-09-19T00:43:00,915 vendor/easel/esl_keyhash.c: In function ‘key_upsize’: 2023-09-19T00:43:00,917 vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:00,919 491 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-09-19T00:43:00,920 | ^ 2023-09-19T00:43:01,084 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c 2023-09-19T00:43:01,085 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_bitfield.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_bitfield.o 2023-09-19T00:43:01,379 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c 2023-09-19T00:43:01,381 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_rootfinder.o 2023-09-19T00:43:01,502 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c 2023-09-19T00:43:01,503 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_dirichlet.o 2023-09-19T00:43:01,560 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c 2023-09-19T00:43:01,560 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_recorder.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_recorder.o 2023-09-19T00:43:01,833 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c 2023-09-19T00:43:01,834 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_cluster.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_cluster.o 2023-09-19T00:43:01,899 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c 2023-09-19T00:43:01,900 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_stats.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stats.o 2023-09-19T00:43:02,003 vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’: 2023-09-19T00:43:02,004 vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:02,005 151 | for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */ 2023-09-19T00:43:02,006 | ^ 2023-09-19T00:43:02,152 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c 2023-09-19T00:43:02,154 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_dsqdata.o 2023-09-19T00:43:02,163 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c 2023-09-19T00:43:02,164 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_subcmd.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_subcmd.o 2023-09-19T00:43:02,331 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c 2023-09-19T00:43:02,332 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_vmx.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_vmx.o 2023-09-19T00:43:02,418 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’: 2023-09-19T00:43:02,419 vendor/easel/esl_dsqdata.c:253:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:43:02,420 253 | if (alphatype != dd->abc_r->type) 2023-09-19T00:43:02,422 | ^~ 2023-09-19T00:43:02,426 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c 2023-09-19T00:43:02,427 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_hmm.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_hmm.o 2023-09-19T00:43:02,441 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’: 2023-09-19T00:43:02,442 vendor/easel/esl_dsqdata.c:614:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-19T00:43:02,443 614 | if (sq->n > max_seqlen) max_seqlen = sq->n; 2023-09-19T00:43:02,444 | ^ 2023-09-19T00:43:02,445 vendor/easel/esl_dsqdata.c:615:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:02,446 615 | n = strlen(sq->name); if (n > max_namelen) max_namelen = n; 2023-09-19T00:43:02,447 | ^ 2023-09-19T00:43:02,447 vendor/easel/esl_dsqdata.c:616:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:02,448 616 | n = strlen(sq->acc); if (n > max_acclen) max_acclen = n; 2023-09-19T00:43:02,449 | ^ 2023-09-19T00:43:02,450 vendor/easel/esl_dsqdata.c:617:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:02,451 617 | n = strlen(sq->desc); if (n > max_desclen) max_desclen = n; 2023-09-19T00:43:02,452 | ^ 2023-09-19T00:43:02,453 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c 2023-09-19T00:43:02,453 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_minimizer.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_minimizer.o 2023-09-19T00:43:02,455 vendor/easel/esl_dsqdata.c:676:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:43:02,456 676 | if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen) 2023-09-19T00:43:02,457 | ^~ 2023-09-19T00:43:02,458 vendor/easel/esl_dsqdata.c:682:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:43:02,459 682 | if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1) 2023-09-19T00:43:02,460 | ^~ 2023-09-19T00:43:02,461 vendor/easel/esl_dsqdata.c:687:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:43:02,462 687 | if ( fwrite(sq->acc, sizeof(char), n+1, mfp) != n+1) 2023-09-19T00:43:02,463 | ^~ 2023-09-19T00:43:02,463 vendor/easel/esl_dsqdata.c:692:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:43:02,464 692 | if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1) 2023-09-19T00:43:02,465 | ^~ 2023-09-19T00:43:02,521 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’: 2023-09-19T00:43:02,522 vendor/easel/esl_dsqdata.c:1129:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-09-19T00:43:02,523 1129 | } 2023-09-19T00:43:02,524 | ^ 2023-09-19T00:43:02,533 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’: 2023-09-19T00:43:02,534 vendor/easel/esl_dsqdata.c:1052:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-09-19T00:43:02,535 1052 | } 2023-09-19T00:43:02,535 | ^ 2023-09-19T00:43:02,625 In file included from vendor/easel/esl_hmm.c:9: 2023-09-19T00:43:02,626 vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’: 2023-09-19T00:43:02,627 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:43:02,628 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-09-19T00:43:02,629 | ^ 2023-09-19T00:43:02,630 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2023-09-19T00:43:02,631 265 | mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2023-09-19T00:43:02,632 | ^~~~~~~ 2023-09-19T00:43:02,633 vendor/easel/easel.h:416:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-09-19T00:43:02,634 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-09-19T00:43:02,635 | ^~~ 2023-09-19T00:43:02,636 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2023-09-19T00:43:02,637 265 | mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2023-09-19T00:43:02,638 | ^~~~~~~ 2023-09-19T00:43:02,859 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c 2023-09-19T00:43:02,860 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_matrixops.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_matrixops.o 2023-09-19T00:43:02,950 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2023-09-19T00:43:02,951 vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-19T00:43:02,952 243 | if (opt_fx) *opt_fx = fx; 2023-09-19T00:43:02,953 | ~~~~~~~~^~~~ 2023-09-19T00:43:02,954 vendor/easel/esl_minimizer.c:119:10: note: ‘fx’ was declared here 2023-09-19T00:43:02,955 119 | double fx; 2023-09-19T00:43:02,956 | ^~ 2023-09-19T00:43:02,957 In function ‘brent’, 2023-09-19T00:43:02,958 inlined from ‘esl_min_ConjugateGradientDescent’ at vendor/easel/esl_minimizer.c:192:7: 2023-09-19T00:43:02,959 vendor/easel/esl_minimizer.c:720:21: warning: ‘cx’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-19T00:43:02,960 720 | m = 0.5 * (a+b); 2023-09-19T00:43:02,961 | ~~^~~ 2023-09-19T00:43:02,962 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2023-09-19T00:43:02,962 vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here 2023-09-19T00:43:02,963 118 | double ax,bx,cx; 2023-09-19T00:43:02,964 | ^~ 2023-09-19T00:43:02,965 In function ‘brent’, 2023-09-19T00:43:02,965 inlined from ‘esl_min_ConjugateGradientDescent’ at vendor/easel/esl_minimizer.c:192:7: 2023-09-19T00:43:02,966 vendor/easel/esl_minimizer.c:720:21: warning: ‘ax’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-19T00:43:02,967 720 | m = 0.5 * (a+b); 2023-09-19T00:43:02,968 | ~~^~~ 2023-09-19T00:43:02,969 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2023-09-19T00:43:02,983 vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here 2023-09-19T00:43:02,984 118 | double ax,bx,cx; 2023-09-19T00:43:02,992 | ^~ 2023-09-19T00:43:03,540 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c 2023-09-19T00:43:03,540 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_varint.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_varint.o 2023-09-19T00:43:03,758 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c 2023-09-19T00:43:03,759 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_msaweight.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msaweight.o 2023-09-19T00:43:03,839 generating build/temp.linux-armv7l-cpython-311/build/temp.linux-armv7l-cpython-311/esl_sqio_ascii.o from build/temp.linux-armv7l-cpython-311/esl_sqio_ascii.c 2023-09-19T00:43:03,840 creating build/temp.linux-armv7l-cpython-311/build 2023-09-19T00:43:03,841 creating build/temp.linux-armv7l-cpython-311/build/temp.linux-armv7l-cpython-311 2023-09-19T00:43:03,842 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c build/temp.linux-armv7l-cpython-311/esl_sqio_ascii.c -o build/temp.linux-armv7l-cpython-311/build/temp.linux-armv7l-cpython-311/esl_sqio_ascii.o 2023-09-19T00:43:04,098 vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’: 2023-09-19T00:43:04,099 vendor/easel/esl_varint.c:474:11: warning: ‘grp’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-19T00:43:04,100 474 | if (grp & cmask) { status = eslEOD; goto ERROR; } 2023-09-19T00:43:04,100 | ~~~~^~~~~~~ 2023-09-19T00:43:04,101 vendor/easel/esl_varint.c:464:12: note: ‘grp’ was declared here 2023-09-19T00:43:04,102 464 | uint64_t grp; // current k-bit code group 2023-09-19T00:43:04,103 | ^~~ 2023-09-19T00:43:04,138 build/temp.linux-armv7l-cpython-311/esl_sqio_ascii.c: In function ‘sqascii_Echo’: 2023-09-19T00:43:04,141 build/temp.linux-armv7l-cpython-311/esl_sqio_ascii.c:1669:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:43:04,142 1669 | if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed"); 2023-09-19T00:43:04,143 | ^~ 2023-09-19T00:43:04,175 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c 2023-09-19T00:43:04,176 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_distance.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_distance.o 2023-09-19T00:43:04,814 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c 2023-09-19T00:43:04,814 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_hyperexp.o 2023-09-19T00:43:05,389 vendor/easel/esl_msaweight.c: In function ‘esl_msaweight_IDFilter_adv’: 2023-09-19T00:43:05,390 vendor/easel/esl_msaweight.c:1035:9: warning: ‘conscols’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-19T00:43:05,391 1035 | collect_counts(cfg, msa, conscols, ncons, ct, NULL); 2023-09-19T00:43:05,391 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:05,392 vendor/easel/esl_msaweight.c:435:1: note: by argument 3 of type ‘const int *’ to ‘collect_counts.isra’ declared here 2023-09-19T00:43:05,393 435 | collect_counts(const ESL_MSAWEIGHT_CFG *cfg, const ESL_MSA *msa, const int *conscols, int ncons, int **ct, ESL_MSAWEIGHT_DAT *dat) 2023-09-19T00:43:05,394 | ^~~~~~~~~~~~~~ 2023-09-19T00:43:05,622 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c 2023-09-19T00:43:05,623 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_heap.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_heap.o 2023-09-19T00:43:05,769 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c 2023-09-19T00:43:05,770 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_composition.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_composition.o 2023-09-19T00:43:06,043 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c 2023-09-19T00:43:06,044 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_mixgev.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mixgev.o 2023-09-19T00:43:06,068 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c 2023-09-19T00:43:06,069 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_scorematrix.o 2023-09-19T00:43:06,485 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c 2023-09-19T00:43:06,486 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_wuss.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_wuss.o 2023-09-19T00:43:06,860 vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’: 2023-09-19T00:43:06,862 vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-19T00:43:06,863 136 | return status; 2023-09-19T00:43:06,863 | ^~~~~~ 2023-09-19T00:43:06,864 vendor/easel/esl_wuss.c:56:14: note: ‘status’ was declared here 2023-09-19T00:43:06,865 56 | int status; /* success or failure return status */ 2023-09-19T00:43:06,866 | ^~~~~~ 2023-09-19T00:43:07,012 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c 2023-09-19T00:43:07,013 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_tree.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_tree.o 2023-09-19T00:43:07,748 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c 2023-09-19T00:43:07,748 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_neon.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_neon.o 2023-09-19T00:43:08,281 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_json.o from vendor/easel/esl_json.c 2023-09-19T00:43:08,282 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_json.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_json.o 2023-09-19T00:43:08,468 vendor/easel/esl_json.c: In function ‘esl_json_Validate’: 2023-09-19T00:43:08,469 vendor/easel/esl_json.c:752:33: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2023-09-19T00:43:08,469 752 | case eslJSON_BOOLEAN: if (! esl_memstrcmp(bf->mem + pos1, pos2-pos1+1, "true") && 2023-09-19T00:43:08,470 | ^~ 2023-09-19T00:43:08,471 vendor/easel/esl_json.c:753:167: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2023-09-19T00:43:08,472 753 | ! esl_memstrcmp(bf->mem + pos1, pos2-pos1+1, "false")) ESL_FAIL(eslFAIL, errbuf, "boolean isn't a boolean, tok %d", i); break; 2023-09-19T00:43:08,473 | ^~~~~ 2023-09-19T00:43:10,165 generating build/temp.linux-armv7l-cpython-311/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c 2023-09-19T00:43:10,166 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/interface_gsl.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/interface_gsl.o 2023-09-19T00:43:10,226 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c 2023-09-19T00:43:10,226 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msashuffle.o 2023-09-19T00:43:10,400 vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’: 2023-09-19T00:43:10,401 vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:43:10,402 449 | if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle"); 2023-09-19T00:43:10,403 | ^~ 2023-09-19T00:43:10,458 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c 2023-09-19T00:43:10,458 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/easel/esl_regexp.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_regexp.o 2023-09-19T00:43:12,319 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-311/libeasel.a build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_phylip.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_psiblast.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile2.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_cpu.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_huffman.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msa.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_fileparser.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sqio.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_clustal.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_buffer.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_randomseq.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_threads.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sqio_ncbi.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_avx512.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_graph.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_avx.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_arr2.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gumbel.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_random.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_weibull.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_quicksort.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_vectorops.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gencode.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_getopts.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sse.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_ssi.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stopwatch.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_selex.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mixdchlet.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_alloc.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_rand64.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_red_black.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_afa.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sq.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_ratematrix.o build/temp.linux-armv7l-cpython-311/vendor/easel/easel.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_workqueue.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mem.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_swat.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stack.o build/temp.linux-armv7l-cpython-311/vendor/easel/interface_lapack.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_stockholm.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_normal.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_keyhash.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_dirichlet.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stats.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_matrixops.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mpi.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_arr3.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_dmatrix.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_alphabet.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_subcmd.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_minimizer.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stretchexp.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msacluster.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_exponential.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_paml.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_histogram.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_bitfield.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_a2m.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gev.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gamma.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_recorder.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_vmx.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_hmm.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_rootfinder.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_cluster.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_dsqdata.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_hyperexp.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_wuss.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_neon.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_varint.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_distance.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_heap.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_scorematrix.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_json.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_regexp.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msaweight.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_composition.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mixgev.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_tree.o build/temp.linux-armv7l-cpython-311/vendor/easel/interface_gsl.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msashuffle.o build/temp.linux-armv7l-cpython-311/build/temp.linux-armv7l-cpython-311/esl_sqio_ascii.o 2023-09-19T00:43:12,539 generating build/temp.linux-armv7l-cpython-311/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c, build/temp.linux-armv7l-cpython-311/p7_hmmfile.c 2023-09-19T00:43:12,542 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c 2023-09-19T00:43:12,543 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c 2023-09-19T00:43:12,543 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c 2023-09-19T00:43:12,544 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c 2023-09-19T00:43:12,545 creating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src 2023-09-19T00:43:12,546 creating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src 2023-09-19T00:43:12,546 creating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src 2023-09-19T00:43:12,547 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/src/build.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/build.o 2023-09-19T00:43:12,548 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/src/errors.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/errors.o 2023-09-19T00:43:12,548 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_fwdback.o 2023-09-19T00:43:12,549 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_msv.o 2023-09-19T00:43:12,757 In file included from vendor/hmmer/src/generic_msv.c:20: 2023-09-19T00:43:12,758 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-09-19T00:43:12,758 829 | #error "No vector implementation enabled" 2023-09-19T00:43:12,759 | ^~~~~ 2023-09-19T00:43:12,760 In file included from vendor/hmmer/src/errors.c:19: 2023-09-19T00:43:12,761 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-09-19T00:43:12,762 829 | #error "No vector implementation enabled" 2023-09-19T00:43:12,763 | ^~~~~ 2023-09-19T00:43:12,764 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:12,765 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-09-19T00:43:12,766 | ^~~~~~ 2023-09-19T00:43:12,767 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:12,768 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-09-19T00:43:12,770 | ^~~~~~ 2023-09-19T00:43:12,771 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:12,771 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-09-19T00:43:12,773 | ^~~~~~ 2023-09-19T00:43:12,774 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:12,775 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-09-19T00:43:12,776 | ^~~~~~ 2023-09-19T00:43:12,777 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:12,778 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-09-19T00:43:12,779 | ^~~~~~ 2023-09-19T00:43:12,780 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:12,781 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-09-19T00:43:12,782 | ^~~~~~ 2023-09-19T00:43:12,783 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:12,784 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-09-19T00:43:12,786 | ^~~~~~ 2023-09-19T00:43:12,787 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:12,787 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-09-19T00:43:12,791 | ^~~~~~ 2023-09-19T00:43:12,792 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,793 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-09-19T00:43:12,794 | ^~~~~~~~~~~ 2023-09-19T00:43:12,795 | P7_PROFILE 2023-09-19T00:43:12,796 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,797 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-09-19T00:43:12,800 | ^~~~~~~~~~~ 2023-09-19T00:43:12,800 | P7_PROFILE 2023-09-19T00:43:12,802 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,803 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-09-19T00:43:12,806 | ^~~~~~~~~~~ 2023-09-19T00:43:12,807 | P7_PROFILE 2023-09-19T00:43:12,808 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,810 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-09-19T00:43:12,814 | ^~~~~~~~~~~ 2023-09-19T00:43:12,815 | P7_PROFILE 2023-09-19T00:43:12,817 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,818 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-09-19T00:43:12,818 | ^~~~~~~~~~~ 2023-09-19T00:43:12,819 | P7_PROFILE 2023-09-19T00:43:12,821 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,822 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-09-19T00:43:12,823 | ^~~~~~~~~~~ 2023-09-19T00:43:12,824 | P7_PROFILE 2023-09-19T00:43:12,826 In file included from vendor/hmmer/src/build.c:32: 2023-09-19T00:43:12,828 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-09-19T00:43:12,833 829 | #error "No vector implementation enabled" 2023-09-19T00:43:12,834 | ^~~~~ 2023-09-19T00:43:12,834 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:12,835 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-09-19T00:43:12,836 | ^~~~~~ 2023-09-19T00:43:12,836 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:12,837 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-09-19T00:43:12,838 | ^~~~~~ 2023-09-19T00:43:12,839 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:12,840 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-09-19T00:43:12,841 | ^~~~~~ 2023-09-19T00:43:12,842 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:12,844 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-09-19T00:43:12,847 | ^~~~~~ 2023-09-19T00:43:12,848 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,848 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-09-19T00:43:12,852 | ^~~~~~~~~~~ 2023-09-19T00:43:12,853 | P7_PROFILE 2023-09-19T00:43:12,854 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,855 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-09-19T00:43:12,855 | ^~~~~~~~~~~ 2023-09-19T00:43:12,856 | P7_PROFILE 2023-09-19T00:43:12,857 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:12,859 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-09-19T00:43:12,860 | ^~~~~~~~~~~ 2023-09-19T00:43:12,861 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:12,862 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-09-19T00:43:12,863 | ^~~~~~~~~~~ 2023-09-19T00:43:12,864 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,865 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-09-19T00:43:12,866 | ^~~~~~~~~~~ 2023-09-19T00:43:12,867 | P7_PROFILE 2023-09-19T00:43:12,868 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,868 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-09-19T00:43:12,869 | ^~~~~~~~~~~ 2023-09-19T00:43:12,870 | P7_PROFILE 2023-09-19T00:43:12,871 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,872 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-09-19T00:43:12,873 | ^~~~~~~~~~~ 2023-09-19T00:43:12,873 | P7_PROFILE 2023-09-19T00:43:12,874 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,875 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-09-19T00:43:12,875 | ^~~~~~~~~~~ 2023-09-19T00:43:12,876 | P7_PROFILE 2023-09-19T00:43:12,877 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,877 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-09-19T00:43:12,879 | ^~~~~~~~~~~ 2023-09-19T00:43:12,880 | P7_PROFILE 2023-09-19T00:43:12,881 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,882 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-09-19T00:43:12,883 | ^~~~~~~~~~~ 2023-09-19T00:43:12,883 | P7_PROFILE 2023-09-19T00:43:12,884 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,885 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-09-19T00:43:12,886 | ^~~~~~~~~~~ 2023-09-19T00:43:12,887 | P7_PROFILE 2023-09-19T00:43:12,888 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,889 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-09-19T00:43:12,890 | ^~~~~~~~~~~ 2023-09-19T00:43:12,891 | P7_PROFILE 2023-09-19T00:43:12,891 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,893 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:12,898 | ^~~~~~~~~~~ 2023-09-19T00:43:12,899 | P7_PROFILE 2023-09-19T00:43:12,899 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,900 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:12,900 | ^~~~~~~~~~~ 2023-09-19T00:43:12,901 | P7_PROFILE 2023-09-19T00:43:12,902 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:12,903 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-09-19T00:43:12,904 | ^~~~~~~~~~~ 2023-09-19T00:43:12,904 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:12,905 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:12,906 | ^~~~~~ 2023-09-19T00:43:12,907 | P7_GMX 2023-09-19T00:43:12,907 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:12,908 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:12,909 | ^~~~~~ 2023-09-19T00:43:12,910 | P7_GMX 2023-09-19T00:43:12,911 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,911 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-09-19T00:43:12,912 | ^~~~~~~~~~~ 2023-09-19T00:43:12,913 | P7_PROFILE 2023-09-19T00:43:12,914 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:12,915 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:12,916 | ^~~~~~ 2023-09-19T00:43:12,917 | P7_GMX 2023-09-19T00:43:12,917 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:12,918 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:12,919 | ^~~~~~ 2023-09-19T00:43:12,920 | P7_GMX 2023-09-19T00:43:12,921 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,922 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-09-19T00:43:12,923 | ^~~~~~~~~~~ 2023-09-19T00:43:12,923 | P7_PROFILE 2023-09-19T00:43:12,924 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:12,925 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:12,925 | ^~~~~~ 2023-09-19T00:43:12,926 | P7_GMX 2023-09-19T00:43:12,927 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:12,928 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:12,929 | ^~~~~~ 2023-09-19T00:43:12,929 | P7_GMX 2023-09-19T00:43:12,930 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:12,931 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:12,932 | ^~~~~~ 2023-09-19T00:43:12,933 | P7_GMX 2023-09-19T00:43:12,934 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:12,934 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:12,935 | ^~~~~~ 2023-09-19T00:43:12,936 | P7_GMX 2023-09-19T00:43:12,937 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,938 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:12,938 | ^~~~~~~~~~~ 2023-09-19T00:43:12,939 | P7_PROFILE 2023-09-19T00:43:12,940 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:12,941 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:12,942 | ^~~~~~ 2023-09-19T00:43:12,942 | P7_GMX 2023-09-19T00:43:12,947 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,948 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-09-19T00:43:12,949 | ^~~~~~~~~~~ 2023-09-19T00:43:12,949 | P7_PROFILE 2023-09-19T00:43:12,951 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,951 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-09-19T00:43:12,952 | ^~~~~~~~~~~ 2023-09-19T00:43:12,953 | P7_PROFILE 2023-09-19T00:43:12,954 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:12,954 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:12,955 | ^~~~~~ 2023-09-19T00:43:12,956 | P7_GMX 2023-09-19T00:43:12,957 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,958 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-09-19T00:43:12,958 | ^~~~~~~~~~~ 2023-09-19T00:43:12,959 | P7_PROFILE 2023-09-19T00:43:12,960 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,961 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-09-19T00:43:12,962 | ^~~~~~~~~~~ 2023-09-19T00:43:12,962 | P7_PROFILE 2023-09-19T00:43:12,963 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:12,964 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:12,965 | ^~~~~~ 2023-09-19T00:43:12,965 | P7_GMX 2023-09-19T00:43:12,966 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:12,967 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:12,968 | ^~~~~~ 2023-09-19T00:43:12,973 | P7_GMX 2023-09-19T00:43:12,973 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,974 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-09-19T00:43:12,975 | ^~~~~~~~~~~ 2023-09-19T00:43:12,978 | P7_PROFILE 2023-09-19T00:43:12,979 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,981 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-09-19T00:43:12,981 | ^~~~~~~~~~~ 2023-09-19T00:43:12,984 | P7_PROFILE 2023-09-19T00:43:12,984 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:12,985 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-09-19T00:43:12,986 | ^~~~~~~~~~~ 2023-09-19T00:43:12,987 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:12,988 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-09-19T00:43:12,988 | ^~~~~~~~~~~ 2023-09-19T00:43:12,989 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:12,990 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-09-19T00:43:12,990 | ^~~~~~~~~~~ 2023-09-19T00:43:12,991 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:12,992 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-09-19T00:43:12,993 | ^~~~~~~~~~~ 2023-09-19T00:43:12,994 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,994 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-09-19T00:43:12,995 | ^~~~~~~~~~~ 2023-09-19T00:43:12,996 | P7_PROFILE 2023-09-19T00:43:12,997 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:12,998 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-09-19T00:43:12,998 | ^~~~~~~~~~~ 2023-09-19T00:43:13,000 | P7_PROFILE 2023-09-19T00:43:13,001 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,002 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-09-19T00:43:13,002 | ^~~~~~~~~~~ 2023-09-19T00:43:13,003 | P7_PROFILE 2023-09-19T00:43:13,004 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,005 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-09-19T00:43:13,006 | ^~~~~~~~~~~ 2023-09-19T00:43:13,007 | P7_PROFILE 2023-09-19T00:43:13,008 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,008 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-09-19T00:43:13,009 | ^~~~~~~~~~~ 2023-09-19T00:43:13,009 | P7_PROFILE 2023-09-19T00:43:13,010 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,011 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-09-19T00:43:13,011 | ^~~~~~~~~~~ 2023-09-19T00:43:13,012 | P7_PROFILE 2023-09-19T00:43:13,013 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,014 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-09-19T00:43:13,015 | ^~~~~~~~~~~ 2023-09-19T00:43:13,016 | P7_PROFILE 2023-09-19T00:43:13,016 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,017 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-09-19T00:43:13,018 | ^~~~~~~~~~~ 2023-09-19T00:43:13,019 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,020 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-09-19T00:43:13,021 | ^~~~~~~~~~~ 2023-09-19T00:43:13,022 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,023 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-09-19T00:43:13,024 | ^~~~~~~~~~~ 2023-09-19T00:43:13,025 | P7_PROFILE 2023-09-19T00:43:13,026 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,026 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-09-19T00:43:13,027 | ^~~~~~~~~~~ 2023-09-19T00:43:13,028 | P7_PROFILE 2023-09-19T00:43:13,029 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,029 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-09-19T00:43:13,030 | ^~~~~~~~~~~ 2023-09-19T00:43:13,031 | P7_PROFILE 2023-09-19T00:43:13,032 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,033 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-09-19T00:43:13,034 | ^~~~~~~~~~~ 2023-09-19T00:43:13,035 | P7_PROFILE 2023-09-19T00:43:13,036 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c 2023-09-19T00:43:13,036 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_vtrace.o 2023-09-19T00:43:13,037 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,037 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-09-19T00:43:13,038 | ^~~~~~~~~~~ 2023-09-19T00:43:13,039 | P7_PROFILE 2023-09-19T00:43:13,039 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c 2023-09-19T00:43:13,040 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdmstr.o 2023-09-19T00:43:13,041 In file included from vendor/hmmer/src/generic_fwdback.c:15: 2023-09-19T00:43:13,041 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-09-19T00:43:13,042 829 | #error "No vector implementation enabled" 2023-09-19T00:43:13,043 | ^~~~~ 2023-09-19T00:43:13,044 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,045 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-09-19T00:43:13,046 | ^~~~~~ 2023-09-19T00:43:13,046 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,047 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-09-19T00:43:13,048 | ^~~~~~ 2023-09-19T00:43:13,049 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,049 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-09-19T00:43:13,054 | ^~~~~~ 2023-09-19T00:43:13,054 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,056 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-09-19T00:43:13,056 | ^~~~~~ 2023-09-19T00:43:13,057 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,058 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-09-19T00:43:13,058 | ^~~~~~~~~~~ 2023-09-19T00:43:13,059 | P7_PROFILE 2023-09-19T00:43:13,060 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,061 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-09-19T00:43:13,062 | ^~~~~~~~~~~ 2023-09-19T00:43:13,064 | P7_PROFILE 2023-09-19T00:43:13,065 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c 2023-09-19T00:43:13,066 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdwrkr_shard.o 2023-09-19T00:43:13,067 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,069 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-09-19T00:43:13,072 | ^~~~~~~~~~~ 2023-09-19T00:43:13,072 | P7_PROFILE 2023-09-19T00:43:13,073 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,076 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-09-19T00:43:13,077 | ^~~~~~~~~~~ 2023-09-19T00:43:13,078 | P7_PROFILE 2023-09-19T00:43:13,079 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,080 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-09-19T00:43:13,081 | ^~~~~~~~~~~ 2023-09-19T00:43:13,081 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,082 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-09-19T00:43:13,083 | ^~~~~~~~~~~ 2023-09-19T00:43:13,084 | P7_PROFILE 2023-09-19T00:43:13,085 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,085 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-09-19T00:43:13,086 | ^~~~~~~~~~~ 2023-09-19T00:43:13,087 | P7_PROFILE 2023-09-19T00:43:13,088 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,089 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,090 | ^~~~~~~~~~~ 2023-09-19T00:43:13,091 | P7_PROFILE 2023-09-19T00:43:13,093 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,095 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,096 | ^~~~~~ 2023-09-19T00:43:13,097 | P7_GMX 2023-09-19T00:43:13,098 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,099 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,099 | ^~~~~~ 2023-09-19T00:43:13,100 | P7_GMX 2023-09-19T00:43:13,100 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,101 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,102 | ^~~~~~ 2023-09-19T00:43:13,103 | P7_GMX 2023-09-19T00:43:13,103 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,104 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,105 | ^~~~~~ 2023-09-19T00:43:13,105 | P7_GMX 2023-09-19T00:43:13,106 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,107 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-09-19T00:43:13,108 | ^~~~~~~~~~~ 2023-09-19T00:43:13,109 | P7_PROFILE 2023-09-19T00:43:13,109 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,110 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-09-19T00:43:13,111 | ^~~~~~~~~~~ 2023-09-19T00:43:13,112 | P7_PROFILE 2023-09-19T00:43:13,113 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,114 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-09-19T00:43:13,114 | ^~~~~~~~~~~ 2023-09-19T00:43:13,115 | P7_PROFILE 2023-09-19T00:43:13,116 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,117 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-09-19T00:43:13,118 | ^~~~~~~~~~~ 2023-09-19T00:43:13,119 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,120 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-09-19T00:43:13,121 | ^~~~~~~~~~~ 2023-09-19T00:43:13,122 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,122 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-09-19T00:43:13,123 | ^~~~~~~~~~~ 2023-09-19T00:43:13,124 | P7_PROFILE 2023-09-19T00:43:13,125 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,125 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-09-19T00:43:13,126 | ^~~~~~~~~~~ 2023-09-19T00:43:13,127 | P7_PROFILE 2023-09-19T00:43:13,127 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c 2023-09-19T00:43:13,128 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdmstr_shard.o 2023-09-19T00:43:13,129 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,129 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-09-19T00:43:13,130 | ^~~~~~~~~~~ 2023-09-19T00:43:13,131 | P7_PROFILE 2023-09-19T00:43:13,132 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c 2023-09-19T00:43:13,133 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdutils.o 2023-09-19T00:43:13,133 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c 2023-09-19T00:43:13,134 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/modelconfig.o 2023-09-19T00:43:13,135 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c 2023-09-19T00:43:13,136 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmd_search_status.o 2023-09-19T00:43:13,139 In file included from vendor/hmmer/src/generic_vtrace.c:14: 2023-09-19T00:43:13,140 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-09-19T00:43:13,141 829 | #error "No vector implementation enabled" 2023-09-19T00:43:13,141 | ^~~~~ 2023-09-19T00:43:13,143 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c 2023-09-19T00:43:13,144 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmer.o 2023-09-19T00:43:13,145 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,145 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-09-19T00:43:13,146 | ^~~~~~ 2023-09-19T00:43:13,147 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,148 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-09-19T00:43:13,148 | ^~~~~~ 2023-09-19T00:43:13,149 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,150 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-09-19T00:43:13,151 | ^~~~~~ 2023-09-19T00:43:13,152 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,153 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-09-19T00:43:13,153 | ^~~~~~ 2023-09-19T00:43:13,154 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,155 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-09-19T00:43:13,156 | ^~~~~~~~~~~ 2023-09-19T00:43:13,157 | P7_PROFILE 2023-09-19T00:43:13,157 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,158 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-09-19T00:43:13,159 | ^~~~~~~~~~~ 2023-09-19T00:43:13,160 | P7_PROFILE 2023-09-19T00:43:13,162 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,164 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-09-19T00:43:13,165 | ^~~~~~~~~~~ 2023-09-19T00:43:13,166 | P7_PROFILE 2023-09-19T00:43:13,167 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,168 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-09-19T00:43:13,169 | ^~~~~~~~~~~ 2023-09-19T00:43:13,170 | P7_PROFILE 2023-09-19T00:43:13,170 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,171 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-09-19T00:43:13,172 | ^~~~~~~~~~~ 2023-09-19T00:43:13,173 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,174 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-09-19T00:43:13,176 | ^~~~~~~~~~~ 2023-09-19T00:43:13,177 | P7_PROFILE 2023-09-19T00:43:13,177 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,178 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-09-19T00:43:13,179 | ^~~~~~~~~~~ 2023-09-19T00:43:13,180 | P7_PROFILE 2023-09-19T00:43:13,181 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,181 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,183 | ^~~~~~~~~~~ 2023-09-19T00:43:13,183 | P7_PROFILE 2023-09-19T00:43:13,184 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,185 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,186 | ^~~~~~ 2023-09-19T00:43:13,187 | P7_GMX 2023-09-19T00:43:13,188 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,188 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,189 | ^~~~~~ 2023-09-19T00:43:13,190 | P7_GMX 2023-09-19T00:43:13,191 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,192 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,193 | ^~~~~~ 2023-09-19T00:43:13,194 | P7_GMX 2023-09-19T00:43:13,195 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,196 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,197 | ^~~~~~ 2023-09-19T00:43:13,198 | P7_GMX 2023-09-19T00:43:13,199 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,200 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-09-19T00:43:13,201 | ^~~~~~~~~~~ 2023-09-19T00:43:13,201 | P7_PROFILE 2023-09-19T00:43:13,202 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,203 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-09-19T00:43:13,203 | ^~~~~~~~~~~ 2023-09-19T00:43:13,204 | P7_PROFILE 2023-09-19T00:43:13,205 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,206 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-09-19T00:43:13,206 | ^~~~~~~~~~~ 2023-09-19T00:43:13,207 | P7_PROFILE 2023-09-19T00:43:13,208 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,209 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-09-19T00:43:13,209 | ^~~~~~~~~~~ 2023-09-19T00:43:13,210 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,211 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-09-19T00:43:13,212 | ^~~~~~~~~~~ 2023-09-19T00:43:13,213 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,214 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-09-19T00:43:13,215 | ^~~~~~~~~~~ 2023-09-19T00:43:13,216 | P7_PROFILE 2023-09-19T00:43:13,216 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,217 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-09-19T00:43:13,218 | ^~~~~~~~~~~ 2023-09-19T00:43:13,219 | P7_PROFILE 2023-09-19T00:43:13,220 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,220 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-09-19T00:43:13,221 | ^~~~~~~~~~~ 2023-09-19T00:43:13,222 | P7_PROFILE 2023-09-19T00:43:13,243 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c 2023-09-19T00:43:13,246 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/tracealign.o 2023-09-19T00:43:13,342 In file included from vendor/hmmer/src/modelconfig.c:25: 2023-09-19T00:43:13,343 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-09-19T00:43:13,343 829 | #error "No vector implementation enabled" 2023-09-19T00:43:13,344 | ^~~~~ 2023-09-19T00:43:13,345 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,346 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-09-19T00:43:13,346 | ^~~~~~ 2023-09-19T00:43:13,347 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,348 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-09-19T00:43:13,349 | ^~~~~~ 2023-09-19T00:43:13,350 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,351 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-09-19T00:43:13,351 | ^~~~~~ 2023-09-19T00:43:13,352 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,353 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-09-19T00:43:13,353 | ^~~~~~ 2023-09-19T00:43:13,354 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,356 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-09-19T00:43:13,356 | ^~~~~~~~~~~ 2023-09-19T00:43:13,357 | P7_PROFILE 2023-09-19T00:43:13,359 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,360 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-09-19T00:43:13,361 | ^~~~~~~~~~~ 2023-09-19T00:43:13,361 | P7_PROFILE 2023-09-19T00:43:13,363 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,364 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-09-19T00:43:13,365 | ^~~~~~~~~~~ 2023-09-19T00:43:13,365 | P7_PROFILE 2023-09-19T00:43:13,367 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,367 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-09-19T00:43:13,368 | ^~~~~~~~~~~ 2023-09-19T00:43:13,369 | P7_PROFILE 2023-09-19T00:43:13,370 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,371 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-09-19T00:43:13,372 | ^~~~~~~~~~~ 2023-09-19T00:43:13,375 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,376 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-09-19T00:43:13,377 | ^~~~~~~~~~~ 2023-09-19T00:43:13,378 | P7_PROFILE 2023-09-19T00:43:13,380 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,381 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-09-19T00:43:13,381 | ^~~~~~~~~~~ 2023-09-19T00:43:13,383 | P7_PROFILE 2023-09-19T00:43:13,384 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,385 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,386 | ^~~~~~~~~~~ 2023-09-19T00:43:13,387 | P7_PROFILE 2023-09-19T00:43:13,389 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,390 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,391 | ^~~~~~ 2023-09-19T00:43:13,392 | P7_GMX 2023-09-19T00:43:13,394 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,395 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,396 | ^~~~~~ 2023-09-19T00:43:13,397 | P7_GMX 2023-09-19T00:43:13,400 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,401 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,402 | ^~~~~~ 2023-09-19T00:43:13,403 | P7_GMX 2023-09-19T00:43:13,403 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,404 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,405 | ^~~~~~ 2023-09-19T00:43:13,406 | P7_GMX 2023-09-19T00:43:13,409 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,410 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-09-19T00:43:13,411 | ^~~~~~~~~~~ 2023-09-19T00:43:13,412 | P7_PROFILE 2023-09-19T00:43:13,414 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,415 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-09-19T00:43:13,416 | ^~~~~~~~~~~ 2023-09-19T00:43:13,416 | P7_PROFILE 2023-09-19T00:43:13,418 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,419 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-09-19T00:43:13,420 | ^~~~~~~~~~~ 2023-09-19T00:43:13,420 | P7_PROFILE 2023-09-19T00:43:13,421 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,422 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-09-19T00:43:13,423 | ^~~~~~~~~~~ 2023-09-19T00:43:13,424 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,424 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-09-19T00:43:13,426 | ^~~~~~~~~~~ 2023-09-19T00:43:13,427 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,428 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-09-19T00:43:13,428 | ^~~~~~~~~~~ 2023-09-19T00:43:13,429 | P7_PROFILE 2023-09-19T00:43:13,430 In file included from vendor/hmmer/src/hmmer.c:18: 2023-09-19T00:43:13,431 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-09-19T00:43:13,432 829 | #error "No vector implementation enabled" 2023-09-19T00:43:13,433 | ^~~~~ 2023-09-19T00:43:13,434 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,436 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-09-19T00:43:13,437 | ^~~~~~~~~~~ 2023-09-19T00:43:13,438 | P7_PROFILE 2023-09-19T00:43:13,440 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,441 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-09-19T00:43:13,443 | ^~~~~~ 2023-09-19T00:43:13,444 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,446 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-09-19T00:43:13,446 | ^~~~~~ 2023-09-19T00:43:13,448 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,449 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-09-19T00:43:13,450 | ^~~~~~ 2023-09-19T00:43:13,450 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,451 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-09-19T00:43:13,452 | ^~~~~~ 2023-09-19T00:43:13,452 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,453 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-09-19T00:43:13,454 | ^~~~~~~~~~~ 2023-09-19T00:43:13,455 | P7_PROFILE 2023-09-19T00:43:13,457 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,458 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-09-19T00:43:13,458 | ^~~~~~~~~~~ 2023-09-19T00:43:13,459 | P7_PROFILE 2023-09-19T00:43:13,460 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,474 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-09-19T00:43:13,475 | ^~~~~~~~~~~ 2023-09-19T00:43:13,476 | P7_PROFILE 2023-09-19T00:43:13,477 In file included from vendor/hmmer/src/hmmd_search_status.c:18: 2023-09-19T00:43:13,478 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-09-19T00:43:13,479 829 | #error "No vector implementation enabled" 2023-09-19T00:43:13,480 | ^~~~~ 2023-09-19T00:43:13,481 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,482 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-09-19T00:43:13,483 | ^~~~~~~~~~~ 2023-09-19T00:43:13,484 | P7_PROFILE 2023-09-19T00:43:13,485 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,486 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-09-19T00:43:13,487 | ^~~~~~ 2023-09-19T00:43:13,488 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,489 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-09-19T00:43:13,490 | ^~~~~~~~~~~ 2023-09-19T00:43:13,491 | P7_PROFILE 2023-09-19T00:43:13,492 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,493 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-09-19T00:43:13,494 | ^~~~~~ 2023-09-19T00:43:13,496 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,497 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-09-19T00:43:13,499 | ^~~~~~ 2023-09-19T00:43:13,500 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,501 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-09-19T00:43:13,503 | ^~~~~~~~~~~ 2023-09-19T00:43:13,504 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,505 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-09-19T00:43:13,505 | ^~~~~~ 2023-09-19T00:43:13,506 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,507 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-09-19T00:43:13,508 | ^~~~~~~~~~~ 2023-09-19T00:43:13,508 | P7_PROFILE 2023-09-19T00:43:13,509 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,510 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-09-19T00:43:13,511 | ^~~~~~~~~~~ 2023-09-19T00:43:13,512 | P7_PROFILE 2023-09-19T00:43:13,513 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,514 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-09-19T00:43:13,516 | ^~~~~~~~~~~ 2023-09-19T00:43:13,516 | P7_PROFILE 2023-09-19T00:43:13,517 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,519 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-09-19T00:43:13,520 | ^~~~~~~~~~~ 2023-09-19T00:43:13,521 | P7_PROFILE 2023-09-19T00:43:13,523 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,524 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,525 | ^~~~~~~~~~~ 2023-09-19T00:43:13,526 | P7_PROFILE 2023-09-19T00:43:13,528 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,529 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-09-19T00:43:13,529 | ^~~~~~~~~~~ 2023-09-19T00:43:13,533 | P7_PROFILE 2023-09-19T00:43:13,535 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,537 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,538 | ^~~~~~ 2023-09-19T00:43:13,538 | P7_GMX 2023-09-19T00:43:13,539 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c 2023-09-19T00:43:13,540 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_domain.o 2023-09-19T00:43:13,541 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,542 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-09-19T00:43:13,543 | ^~~~~~~~~~~ 2023-09-19T00:43:13,543 | P7_PROFILE 2023-09-19T00:43:13,544 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,545 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,546 | ^~~~~~ 2023-09-19T00:43:13,548 | P7_GMX 2023-09-19T00:43:13,549 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,550 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-09-19T00:43:13,551 | ^~~~~~~~~~~ 2023-09-19T00:43:13,553 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,554 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,555 | ^~~~~~ 2023-09-19T00:43:13,556 | P7_GMX 2023-09-19T00:43:13,557 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,558 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,558 | ^~~~~~ 2023-09-19T00:43:13,562 | P7_GMX 2023-09-19T00:43:13,562 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,563 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-09-19T00:43:13,564 | ^~~~~~~~~~~ 2023-09-19T00:43:13,565 | P7_PROFILE 2023-09-19T00:43:13,566 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,567 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-09-19T00:43:13,567 | ^~~~~~~~~~~ 2023-09-19T00:43:13,568 | P7_PROFILE 2023-09-19T00:43:13,569 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,570 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-09-19T00:43:13,570 | ^~~~~~~~~~~ 2023-09-19T00:43:13,571 | P7_PROFILE 2023-09-19T00:43:13,571 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,572 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,573 | ^~~~~~~~~~~ 2023-09-19T00:43:13,574 | P7_PROFILE 2023-09-19T00:43:13,575 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,576 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-09-19T00:43:13,576 | ^~~~~~~~~~~ 2023-09-19T00:43:13,577 | P7_PROFILE 2023-09-19T00:43:13,578 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,579 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,580 | ^~~~~~ 2023-09-19T00:43:13,581 | P7_GMX 2023-09-19T00:43:13,582 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,586 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-09-19T00:43:13,587 | ^~~~~~~~~~~ 2023-09-19T00:43:13,588 | P7_PROFILE 2023-09-19T00:43:13,588 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,589 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-09-19T00:43:13,590 | ^~~~~~~~~~~ 2023-09-19T00:43:13,591 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,593 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,593 | ^~~~~~ 2023-09-19T00:43:13,594 | P7_GMX 2023-09-19T00:43:13,595 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,595 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-09-19T00:43:13,596 | ^~~~~~~~~~~ 2023-09-19T00:43:13,597 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,605 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,606 | ^~~~~~ 2023-09-19T00:43:13,607 | P7_GMX 2023-09-19T00:43:13,608 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,608 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-09-19T00:43:13,609 | ^~~~~~~~~~~ 2023-09-19T00:43:13,610 | P7_PROFILE 2023-09-19T00:43:13,611 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,612 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,613 | ^~~~~~ 2023-09-19T00:43:13,613 | P7_GMX 2023-09-19T00:43:13,614 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,615 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-09-19T00:43:13,616 | ^~~~~~~~~~~ 2023-09-19T00:43:13,617 | P7_PROFILE 2023-09-19T00:43:13,617 In file included from vendor/hmmer/src/tracealign.c:15: 2023-09-19T00:43:13,618 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-09-19T00:43:13,619 829 | #error "No vector implementation enabled" 2023-09-19T00:43:13,620 | ^~~~~ 2023-09-19T00:43:13,621 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,621 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-09-19T00:43:13,622 | ^~~~~~ 2023-09-19T00:43:13,623 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,624 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-09-19T00:43:13,625 | ^~~~~~ 2023-09-19T00:43:13,626 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,627 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-09-19T00:43:13,627 | ^~~~~~~~~~~ 2023-09-19T00:43:13,628 | P7_PROFILE 2023-09-19T00:43:13,628 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,629 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-09-19T00:43:13,630 | ^~~~~~ 2023-09-19T00:43:13,631 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,639 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-09-19T00:43:13,639 | ^~~~~~ 2023-09-19T00:43:13,640 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,641 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-09-19T00:43:13,642 | ^~~~~~~~~~~ 2023-09-19T00:43:13,642 | P7_PROFILE 2023-09-19T00:43:13,643 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,644 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-09-19T00:43:13,645 | ^~~~~~~~~~~ 2023-09-19T00:43:13,646 | P7_PROFILE 2023-09-19T00:43:13,647 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,647 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-09-19T00:43:13,648 | ^~~~~~~~~~~ 2023-09-19T00:43:13,649 | P7_PROFILE 2023-09-19T00:43:13,650 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,651 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-09-19T00:43:13,652 | ^~~~~~~~~~~ 2023-09-19T00:43:13,653 | P7_PROFILE 2023-09-19T00:43:13,654 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,655 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-09-19T00:43:13,656 | ^~~~~~~~~~~ 2023-09-19T00:43:13,658 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,659 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-09-19T00:43:13,660 | ^~~~~~~~~~~ 2023-09-19T00:43:13,661 | P7_PROFILE 2023-09-19T00:43:13,662 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,663 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-09-19T00:43:13,664 | ^~~~~~~~~~~ 2023-09-19T00:43:13,665 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,666 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-09-19T00:43:13,667 | ^~~~~~~~~~~ 2023-09-19T00:43:13,668 | P7_PROFILE 2023-09-19T00:43:13,668 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,669 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-09-19T00:43:13,670 | ^~~~~~~~~~~ 2023-09-19T00:43:13,672 | P7_PROFILE 2023-09-19T00:43:13,673 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,673 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-09-19T00:43:13,678 | ^~~~~~~~~~~ 2023-09-19T00:43:13,678 | P7_PROFILE 2023-09-19T00:43:13,679 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,680 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-09-19T00:43:13,681 | ^~~~~~~~~~~ 2023-09-19T00:43:13,681 | P7_PROFILE 2023-09-19T00:43:13,682 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c 2023-09-19T00:43:13,683 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,684 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-09-19T00:43:13,685 | ^~~~~~~~~~~ 2023-09-19T00:43:13,685 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_gmxb.o 2023-09-19T00:43:13,686 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,687 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-09-19T00:43:13,688 | ^~~~~~~~~~~ 2023-09-19T00:43:13,689 | P7_PROFILE 2023-09-19T00:43:13,689 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,690 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-09-19T00:43:13,691 | ^~~~~~~~~~~ 2023-09-19T00:43:13,692 | P7_PROFILE 2023-09-19T00:43:13,693 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,694 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-09-19T00:43:13,694 | ^~~~~~~~~~~ 2023-09-19T00:43:13,695 | P7_PROFILE 2023-09-19T00:43:13,696 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,697 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,698 | ^~~~~~~~~~~ 2023-09-19T00:43:13,699 | P7_PROFILE 2023-09-19T00:43:13,700 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,701 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,702 | ^~~~~~ 2023-09-19T00:43:13,704 | P7_GMX 2023-09-19T00:43:13,705 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,705 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,706 | ^~~~~~ 2023-09-19T00:43:13,707 | P7_GMX 2023-09-19T00:43:13,708 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,709 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,710 | ^~~~~~ 2023-09-19T00:43:13,710 | P7_GMX 2023-09-19T00:43:13,712 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c 2023-09-19T00:43:13,713 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_hmmcache.o 2023-09-19T00:43:13,714 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,715 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,716 | ^~~~~~ 2023-09-19T00:43:13,717 | P7_GMX 2023-09-19T00:43:13,718 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,719 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-09-19T00:43:13,725 | ^~~~~~~~~~~ 2023-09-19T00:43:13,725 | P7_PROFILE 2023-09-19T00:43:13,726 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,727 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-09-19T00:43:13,727 | ^~~~~~~~~~~ 2023-09-19T00:43:13,728 | P7_PROFILE 2023-09-19T00:43:13,729 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,729 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-09-19T00:43:13,730 | ^~~~~~~~~~~ 2023-09-19T00:43:13,731 | P7_PROFILE 2023-09-19T00:43:13,731 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,732 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-09-19T00:43:13,733 | ^~~~~~~~~~~ 2023-09-19T00:43:13,734 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,734 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-09-19T00:43:13,735 | ^~~~~~~~~~~ 2023-09-19T00:43:13,736 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,739 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-09-19T00:43:13,740 | ^~~~~~~~~~~ 2023-09-19T00:43:13,741 | P7_PROFILE 2023-09-19T00:43:13,741 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,742 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-09-19T00:43:13,743 | ^~~~~~~~~~~ 2023-09-19T00:43:13,744 | P7_PROFILE 2023-09-19T00:43:13,745 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,746 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-09-19T00:43:13,746 | ^~~~~~~~~~~ 2023-09-19T00:43:13,748 | P7_PROFILE 2023-09-19T00:43:13,749 vendor/hmmer/src/tracealign.c: In function ‘p7_tracealign_computeTraces’: 2023-09-19T00:43:13,750 vendor/hmmer/src/tracealign.c:239:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,750 239 | P7_OMX *oxf = NULL; /* optimized Forward matrix */ 2023-09-19T00:43:13,752 | ^~~~~~ 2023-09-19T00:43:13,753 | P7_GMX 2023-09-19T00:43:13,754 vendor/hmmer/src/tracealign.c:240:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,755 240 | P7_OMX *oxb = NULL; /* optimized Backward matrix */ 2023-09-19T00:43:13,756 | ^~~~~~ 2023-09-19T00:43:13,757 | P7_GMX 2023-09-19T00:43:13,758 vendor/hmmer/src/tracealign.c:244:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,761 244 | P7_OPROFILE *om = NULL; 2023-09-19T00:43:13,762 | ^~~~~~~~~~~ 2023-09-19T00:43:13,762 | P7_PROFILE 2023-09-19T00:43:13,763 vendor/hmmer/src/tracealign.c:255:8: warning: implicit declaration of function ‘p7_oprofile_Create’; did you mean ‘p7_profile_Create’? [-Wimplicit-function-declaration] 2023-09-19T00:43:13,764 255 | om = p7_oprofile_Create(hmm->M, hmm->abc); 2023-09-19T00:43:13,764 | ^~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:13,765 | p7_profile_Create 2023-09-19T00:43:13,766 vendor/hmmer/src/tracealign.c:255:6: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-19T00:43:13,766 255 | om = p7_oprofile_Create(hmm->M, hmm->abc); 2023-09-19T00:43:13,767 | ^ 2023-09-19T00:43:13,768 vendor/hmmer/src/tracealign.c:258:3: warning: implicit declaration of function ‘p7_oprofile_Convert’; did you mean ‘p7_profile_Compare’? [-Wimplicit-function-declaration] 2023-09-19T00:43:13,769 258 | p7_oprofile_Convert(gm, om); 2023-09-19T00:43:13,770 | ^~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:13,770 | p7_profile_Compare 2023-09-19T00:43:13,771 vendor/hmmer/src/tracealign.c:261:9: warning: implicit declaration of function ‘p7_omx_Create’; did you mean ‘p7_gmx_Create’? [-Wimplicit-function-declaration] 2023-09-19T00:43:13,772 261 | oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2023-09-19T00:43:13,773 | ^~~~~~~~~~~~~ 2023-09-19T00:43:13,775 | p7_gmx_Create 2023-09-19T00:43:13,776 vendor/hmmer/src/tracealign.c:261:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-19T00:43:13,780 261 | oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2023-09-19T00:43:13,780 | ^ 2023-09-19T00:43:13,781 vendor/hmmer/src/tracealign.c:262:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-19T00:43:13,782 262 | oxb = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2023-09-19T00:43:13,783 | ^ 2023-09-19T00:43:13,783 vendor/hmmer/src/tracealign.c:271:5: warning: implicit declaration of function ‘p7_omx_GrowTo’; did you mean ‘p7_gmx_GrowTo’? [-Wimplicit-function-declaration] 2023-09-19T00:43:13,784 271 | p7_omx_GrowTo(oxf, hmm->M, sq[idx]->n, sq[idx]->n); 2023-09-19T00:43:13,785 | ^~~~~~~~~~~~~ 2023-09-19T00:43:13,786 | p7_gmx_GrowTo 2023-09-19T00:43:13,787 vendor/hmmer/src/tracealign.c:274:5: warning: implicit declaration of function ‘p7_oprofile_ReconfigLength’; did you mean ‘p7_ReconfigLength’? [-Wimplicit-function-declaration] 2023-09-19T00:43:13,787 274 | p7_oprofile_ReconfigLength(om, sq[idx]->n); 2023-09-19T00:43:13,788 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:13,789 | p7_ReconfigLength 2023-09-19T00:43:13,790 vendor/hmmer/src/tracealign.c:276:5: warning: implicit declaration of function ‘p7_Forward’; did you mean ‘p7_GForward’? [-Wimplicit-function-declaration] 2023-09-19T00:43:13,791 276 | p7_Forward (sq[idx]->dsq, sq[idx]->n, om, oxf, &fwdsc); 2023-09-19T00:43:13,792 | ^~~~~~~~~~ 2023-09-19T00:43:13,793 | p7_GForward 2023-09-19T00:43:13,794 vendor/hmmer/src/tracealign.c:277:5: warning: implicit declaration of function ‘p7_Backward’; did you mean ‘p7_GBackward’? [-Wimplicit-function-declaration] 2023-09-19T00:43:13,795 277 | p7_Backward(sq[idx]->dsq, sq[idx]->n, om, oxf, oxb, NULL); 2023-09-19T00:43:13,806 | ^~~~~~~~~~~ 2023-09-19T00:43:13,807 | p7_GBackward 2023-09-19T00:43:13,808 vendor/hmmer/src/tracealign.c:279:14: warning: implicit declaration of function ‘p7_Decoding’; did you mean ‘p7_GDecoding’? [-Wimplicit-function-declaration] 2023-09-19T00:43:13,809 279 | status = p7_Decoding(om, oxf, oxb, oxb); /* is now overwritten with post probabilities */ 2023-09-19T00:43:13,810 | ^~~~~~~~~~~ 2023-09-19T00:43:13,810 | p7_GDecoding 2023-09-19T00:43:13,811 vendor/hmmer/src/tracealign.c:283:9: warning: implicit declaration of function ‘p7_OptimalAccuracy’; did you mean ‘p7_GOptimalAccuracy’? [-Wimplicit-function-declaration] 2023-09-19T00:43:13,812 283 | p7_OptimalAccuracy(om, oxb, oxf, &oasc); /* is now overwritten with OA scores */ 2023-09-19T00:43:13,813 | ^~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:13,813 | p7_GOptimalAccuracy 2023-09-19T00:43:13,814 vendor/hmmer/src/tracealign.c:284:9: warning: implicit declaration of function ‘p7_OATrace’; did you mean ‘p7_GOATrace’? [-Wimplicit-function-declaration] 2023-09-19T00:43:13,815 284 | p7_OATrace (om, oxb, oxf, tr[idx]); /* tr[idx] is now an OA traceback for seq #idx */ 2023-09-19T00:43:13,816 | ^~~~~~~~~~ 2023-09-19T00:43:13,816 | p7_GOATrace 2023-09-19T00:43:13,817 vendor/hmmer/src/tracealign.c:346:5: warning: implicit declaration of function ‘p7_omx_Reuse’; did you mean ‘p7_gmx_Reuse’? [-Wimplicit-function-declaration] 2023-09-19T00:43:13,818 346 | p7_omx_Reuse(oxf); 2023-09-19T00:43:13,818 | ^~~~~~~~~~~~ 2023-09-19T00:43:13,819 | p7_gmx_Reuse 2023-09-19T00:43:13,820 vendor/hmmer/src/tracealign.c:357:3: warning: implicit declaration of function ‘p7_omx_Destroy’; did you mean ‘p7_gmx_Destroy’? [-Wimplicit-function-declaration] 2023-09-19T00:43:13,821 357 | p7_omx_Destroy(oxf); 2023-09-19T00:43:13,822 | ^~~~~~~~~~~~~~ 2023-09-19T00:43:13,823 | p7_gmx_Destroy 2023-09-19T00:43:13,824 vendor/hmmer/src/tracealign.c:363:3: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2023-09-19T00:43:13,825 363 | p7_oprofile_Destroy(om); 2023-09-19T00:43:13,825 | ^~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:13,826 | p7_profile_Destroy 2023-09-19T00:43:13,827 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c 2023-09-19T00:43:13,828 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_prior.o 2023-09-19T00:43:13,829 In file included from vendor/hmmer/src/p7_hmmcache.c:15: 2023-09-19T00:43:13,836 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-09-19T00:43:13,837 829 | #error "No vector implementation enabled" 2023-09-19T00:43:13,838 | ^~~~~ 2023-09-19T00:43:13,839 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,840 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-09-19T00:43:13,841 | ^~~~~~ 2023-09-19T00:43:13,842 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,842 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-09-19T00:43:13,843 | ^~~~~~ 2023-09-19T00:43:13,844 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,845 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-09-19T00:43:13,846 | ^~~~~~ 2023-09-19T00:43:13,846 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,847 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-09-19T00:43:13,849 | ^~~~~~ 2023-09-19T00:43:13,849 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,850 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-09-19T00:43:13,851 | ^~~~~~~~~~~ 2023-09-19T00:43:13,852 | P7_PROFILE 2023-09-19T00:43:13,853 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,853 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-09-19T00:43:13,854 | ^~~~~~~~~~~ 2023-09-19T00:43:13,855 | P7_PROFILE 2023-09-19T00:43:13,856 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,857 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-09-19T00:43:13,857 | ^~~~~~~~~~~ 2023-09-19T00:43:13,858 | P7_PROFILE 2023-09-19T00:43:13,859 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,860 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-09-19T00:43:13,861 | ^~~~~~~~~~~ 2023-09-19T00:43:13,862 | P7_PROFILE 2023-09-19T00:43:13,872 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,873 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-09-19T00:43:13,873 | ^~~~~~~~~~~ 2023-09-19T00:43:13,874 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,875 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-09-19T00:43:13,876 | ^~~~~~~~~~~ 2023-09-19T00:43:13,877 | P7_PROFILE 2023-09-19T00:43:13,878 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,879 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-09-19T00:43:13,880 | ^~~~~~~~~~~ 2023-09-19T00:43:13,880 | P7_PROFILE 2023-09-19T00:43:13,881 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,882 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,883 | ^~~~~~~~~~~ 2023-09-19T00:43:13,884 | P7_PROFILE 2023-09-19T00:43:13,885 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,885 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,886 | ^~~~~~ 2023-09-19T00:43:13,887 | P7_GMX 2023-09-19T00:43:13,888 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,889 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,889 | ^~~~~~ 2023-09-19T00:43:13,890 | P7_GMX 2023-09-19T00:43:13,891 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,892 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,892 | ^~~~~~ 2023-09-19T00:43:13,893 | P7_GMX 2023-09-19T00:43:13,895 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:13,895 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:13,896 | ^~~~~~ 2023-09-19T00:43:13,897 | P7_GMX 2023-09-19T00:43:13,898 In file included from vendor/hmmer/src/p7_domain.c:16: 2023-09-19T00:43:13,899 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-09-19T00:43:13,900 829 | #error "No vector implementation enabled" 2023-09-19T00:43:13,901 | ^~~~~ 2023-09-19T00:43:13,902 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,903 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-09-19T00:43:13,904 | ^~~~~~ 2023-09-19T00:43:13,906 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,907 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-09-19T00:43:13,910 | ^~~~~~ 2023-09-19T00:43:13,911 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,911 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-09-19T00:43:13,912 | ^~~~~~ 2023-09-19T00:43:13,913 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:13,914 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-09-19T00:43:13,917 | ^~~~~~ 2023-09-19T00:43:13,917 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,918 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-09-19T00:43:13,919 | ^~~~~~~~~~~ 2023-09-19T00:43:13,920 | P7_PROFILE 2023-09-19T00:43:13,922 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,924 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-09-19T00:43:13,924 | ^~~~~~~~~~~ 2023-09-19T00:43:13,925 | P7_PROFILE 2023-09-19T00:43:13,926 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,927 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-09-19T00:43:13,928 | ^~~~~~~~~~~ 2023-09-19T00:43:13,930 | P7_PROFILE 2023-09-19T00:43:13,931 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,932 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-09-19T00:43:13,933 | ^~~~~~~~~~~ 2023-09-19T00:43:13,934 | P7_PROFILE 2023-09-19T00:43:13,935 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,936 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-09-19T00:43:13,937 | ^~~~~~~~~~~ 2023-09-19T00:43:13,940 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,940 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-09-19T00:43:13,941 | ^~~~~~~~~~~ 2023-09-19T00:43:13,942 | P7_PROFILE 2023-09-19T00:43:13,943 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,944 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-09-19T00:43:13,946 | ^~~~~~~~~~~ 2023-09-19T00:43:13,947 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,948 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-09-19T00:43:13,948 | ^~~~~~~~~~~ 2023-09-19T00:43:13,949 | P7_PROFILE 2023-09-19T00:43:13,952 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,953 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-09-19T00:43:13,954 | ^~~~~~~~~~~ 2023-09-19T00:43:13,955 | P7_PROFILE 2023-09-19T00:43:13,955 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,960 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-09-19T00:43:13,960 | ^~~~~~~~~~~ 2023-09-19T00:43:13,961 | P7_PROFILE 2023-09-19T00:43:13,962 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,962 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-09-19T00:43:13,963 | ^~~~~~~~~~~ 2023-09-19T00:43:13,964 | P7_PROFILE 2023-09-19T00:43:13,965 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,966 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-09-19T00:43:13,967 | ^~~~~~~~~~~ 2023-09-19T00:43:13,967 | P7_PROFILE 2023-09-19T00:43:13,968 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,969 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-09-19T00:43:13,970 | ^~~~~~~~~~~ 2023-09-19T00:43:13,970 In file included from vendor/hmmer/src/p7_hmmcache.c:16: 2023-09-19T00:43:13,971 vendor/hmmer/src/p7_hmmcache.h:13:3: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:13,972 13 | P7_OPROFILE **list; /* list of profiles [0 .. n-1] */ 2023-09-19T00:43:13,973 | ^~~~~~~~~~~ 2023-09-19T00:43:13,973 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Open’: 2023-09-19T00:43:13,974 vendor/hmmer/src/p7_hmmcache.c:55:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,975 55 | P7_OPROFILE *om = NULL; /* target profile */ 2023-09-19T00:43:13,976 | ^~~~~~~~~~~ 2023-09-19T00:43:13,977 | P7_PROFILE 2023-09-19T00:43:13,977 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,978 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-09-19T00:43:13,981 | ^~~~~~~~~~~ 2023-09-19T00:43:13,982 | P7_PROFILE 2023-09-19T00:43:13,983 In file included from vendor/hmmer/src/p7_hmmcache.c:13: 2023-09-19T00:43:13,984 vendor/hmmer/src/p7_hmmcache.c:66:33: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2023-09-19T00:43:13,985 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-09-19T00:43:13,986 | ^~~~~~~~~~~ 2023-09-19T00:43:13,986 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2023-09-19T00:43:13,993 158 | if ( size <= 0 ) { \ 2023-09-19T00:43:13,993 | ^~~~ 2023-09-19T00:43:13,994 vendor/hmmer/src/p7_hmmcache.c:66:33: note: each undeclared identifier is reported only once for each function it appears in 2023-09-19T00:43:13,995 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-09-19T00:43:13,997 | ^~~~~~~~~~~ 2023-09-19T00:43:13,998 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2023-09-19T00:43:13,999 158 | if ( size <= 0 ) { \ 2023-09-19T00:43:14,000 | ^~~~ 2023-09-19T00:43:14,000 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2023-09-19T00:43:14,001 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-09-19T00:43:14,002 | ^ 2023-09-19T00:43:14,003 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2023-09-19T00:43:14,003 158 | if ( size <= 0 ) { \ 2023-09-19T00:43:14,004 | ^~~~ 2023-09-19T00:43:14,005 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2023-09-19T00:43:14,006 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-09-19T00:43:14,007 | ^ 2023-09-19T00:43:14,007 vendor/easel/easel.h:164:24: note: in definition of macro ‘ESL_ALLOC’ 2023-09-19T00:43:14,008 164 | if ( ((p) = malloc(size)) == NULL) { \ 2023-09-19T00:43:14,009 | ^~~~ 2023-09-19T00:43:14,010 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2023-09-19T00:43:14,011 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-09-19T00:43:14,013 | ^ 2023-09-19T00:43:14,014 vendor/easel/easel.h:166:85: note: in definition of macro ‘ESL_ALLOC’ 2023-09-19T00:43:14,020 166 | esl_exception(status, FALSE, __FILE__, __LINE__, "malloc of size %d failed", size); \ 2023-09-19T00:43:14,020 | ^~~~ 2023-09-19T00:43:14,021 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,022 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-09-19T00:43:14,023 | ^~~~~~~~~~~ 2023-09-19T00:43:14,024 | P7_PROFILE 2023-09-19T00:43:14,025 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,026 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,027 | ^~~~~~~~~~~ 2023-09-19T00:43:14,028 | P7_PROFILE 2023-09-19T00:43:14,029 vendor/hmmer/src/p7_hmmcache.c:70:20: warning: implicit declaration of function ‘p7_oprofile_ReadMSV’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2023-09-19T00:43:14,030 70 | while ((status = p7_oprofile_ReadMSV(hfp, &(cache->abc), &om)) == eslOK) /* eslEFORMAT | eslEINCOMPAT */ 2023-09-19T00:43:14,031 | ^~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:14,032 | p7_profile_Reuse 2023-09-19T00:43:14,033 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,034 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,035 | ^~~~~~ 2023-09-19T00:43:14,036 | P7_GMX 2023-09-19T00:43:14,037 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,037 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,038 | ^~~~~~ 2023-09-19T00:43:14,042 | P7_GMX 2023-09-19T00:43:14,043 vendor/hmmer/src/p7_hmmcache.c:72:22: warning: implicit declaration of function ‘p7_oprofile_ReadRest’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2023-09-19T00:43:14,044 72 | if (( status = p7_oprofile_ReadRest(hfp, om)) != eslOK) break; /* eslEFORMAT */ 2023-09-19T00:43:14,045 | ^~~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:14,046 | p7_profile_Reuse 2023-09-19T00:43:14,046 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,047 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,048 | ^~~~~~ 2023-09-19T00:43:14,049 | P7_GMX 2023-09-19T00:43:14,050 vendor/hmmer/src/p7_hmmcache.c:91:14: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2023-09-19T00:43:14,051 91 | if (om) p7_oprofile_Destroy(om); 2023-09-19T00:43:14,052 | ^~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:14,053 | p7_profile_Destroy 2023-09-19T00:43:14,054 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,055 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,056 | ^~~~~~ 2023-09-19T00:43:14,057 | P7_GMX 2023-09-19T00:43:14,057 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’: 2023-09-19T00:43:14,059 vendor/hmmer/src/p7_hmmcache.c:108:15: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,060 108 | n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2023-09-19T00:43:14,061 | ^~~~~~~~~~~ 2023-09-19T00:43:14,061 | P7_PROFILE 2023-09-19T00:43:14,062 vendor/hmmer/src/p7_hmmcache.c:108:28: error: expected expression before ‘)’ token 2023-09-19T00:43:14,063 108 | n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2023-09-19T00:43:14,064 | ^ 2023-09-19T00:43:14,065 vendor/hmmer/src/p7_hmmcache.c:110:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:14,067 110 | for (i = 0; i < cache->n; i++) 2023-09-19T00:43:14,068 | ^ 2023-09-19T00:43:14,068 vendor/hmmer/src/p7_hmmcache.c:111:10: warning: implicit declaration of function ‘p7_oprofile_Sizeof’; did you mean ‘p7_profile_Sizeof’? [-Wimplicit-function-declaration] 2023-09-19T00:43:14,069 111 | n += p7_oprofile_Sizeof(cache->list[i]); 2023-09-19T00:43:14,070 | ^~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:14,071 | p7_profile_Sizeof 2023-09-19T00:43:14,072 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’: 2023-09-19T00:43:14,073 vendor/hmmer/src/p7_hmmcache.c:134:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,074 134 | P7_OPROFILE *om; 2023-09-19T00:43:14,074 | ^~~~~~~~~~~ 2023-09-19T00:43:14,075 | P7_PROFILE 2023-09-19T00:43:14,076 vendor/hmmer/src/p7_hmmcache.c:138:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:14,078 138 | for (i = 0; i < cache->n; i++) 2023-09-19T00:43:14,078 | ^ 2023-09-19T00:43:14,079 vendor/hmmer/src/p7_hmmcache.c:141:13: error: request for member ‘name’ in something not a structure or union 2023-09-19T00:43:14,080 141 | if (om->name) free(om->name); 2023-09-19T00:43:14,081 | ^~ 2023-09-19T00:43:14,082 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,083 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-09-19T00:43:14,083 | ^~~~~~~~~~~ 2023-09-19T00:43:14,084 | P7_PROFILE 2023-09-19T00:43:14,085 vendor/hmmer/src/p7_hmmcache.c:141:28: error: request for member ‘name’ in something not a structure or union 2023-09-19T00:43:14,086 141 | if (om->name) free(om->name); 2023-09-19T00:43:14,087 | ^~ 2023-09-19T00:43:14,088 vendor/hmmer/src/p7_hmmcache.c:142:38: error: request for member ‘name’ in something not a structure or union 2023-09-19T00:43:14,088 142 | if (( status = esl_sprintf(&(om->name), "%0*d", namelen, i+1)) != eslOK) return status; 2023-09-19T00:43:14,090 | ^~ 2023-09-19T00:43:14,090 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’: 2023-09-19T00:43:14,091 vendor/hmmer/src/p7_hmmcache.c:161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:14,092 161 | for (i = 0; i < cache->n; i++) 2023-09-19T00:43:14,093 | ^ 2023-09-19T00:43:14,095 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,096 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-09-19T00:43:14,097 | ^~~~~~~~~~~ 2023-09-19T00:43:14,098 | P7_PROFILE 2023-09-19T00:43:14,099 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,100 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-09-19T00:43:14,101 | ^~~~~~~~~~~ 2023-09-19T00:43:14,102 | P7_PROFILE 2023-09-19T00:43:14,103 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c 2023-09-19T00:43:14,104 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:14,104 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-09-19T00:43:14,105 | ^~~~~~~~~~~ 2023-09-19T00:43:14,106 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_trace.o 2023-09-19T00:43:14,107 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:14,108 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-09-19T00:43:14,108 | ^~~~~~~~~~~ 2023-09-19T00:43:14,109 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,110 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-09-19T00:43:14,111 | ^~~~~~~~~~~ 2023-09-19T00:43:14,112 | P7_PROFILE 2023-09-19T00:43:14,113 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,114 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-09-19T00:43:14,114 | ^~~~~~~~~~~ 2023-09-19T00:43:14,115 | P7_PROFILE 2023-09-19T00:43:14,116 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,117 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-09-19T00:43:14,118 | ^~~~~~~~~~~ 2023-09-19T00:43:14,120 | P7_PROFILE 2023-09-19T00:43:14,121 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’: 2023-09-19T00:43:14,122 vendor/hmmer/src/p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-09-19T00:43:14,123 191 | network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the 2023-09-19T00:43:14,124 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:14,125 vendor/hmmer/src/p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-09-19T00:43:14,125 198 | network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); 2023-09-19T00:43:14,126 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:14,127 vendor/hmmer/src/p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-09-19T00:43:14,128 203 | network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); 2023-09-19T00:43:14,128 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:14,129 vendor/hmmer/src/p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-09-19T00:43:14,130 208 | network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); 2023-09-19T00:43:14,131 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:14,132 vendor/hmmer/src/p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-09-19T00:43:14,133 213 | network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); 2023-09-19T00:43:14,133 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:14,134 vendor/hmmer/src/p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-09-19T00:43:14,134 218 | network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2023-09-19T00:43:14,135 | ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:14,136 vendor/hmmer/src/p7_domain.c:253:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:43:14,136 253 | if (ser_size != ptr - (*buf + *n)){ 2023-09-19T00:43:14,137 | ^~ 2023-09-19T00:43:14,138 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’: 2023-09-19T00:43:14,138 vendor/hmmer/src/p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-09-19T00:43:14,139 341 | ret_obj->envsc = *((float *) &host_32bit); 2023-09-19T00:43:14,139 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:14,140 vendor/hmmer/src/p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-09-19T00:43:14,141 347 | ret_obj->domcorrection = *((float *) &host_32bit); 2023-09-19T00:43:14,141 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:14,142 vendor/hmmer/src/p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-09-19T00:43:14,143 353 | ret_obj->dombias = *((float *) &host_32bit); 2023-09-19T00:43:14,143 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:14,144 vendor/hmmer/src/p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-09-19T00:43:14,145 359 | ret_obj->oasc = *((float *) &host_32bit); 2023-09-19T00:43:14,145 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:14,146 vendor/hmmer/src/p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-09-19T00:43:14,147 365 | ret_obj->bitscore = *((float *) &host_32bit); 2023-09-19T00:43:14,147 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:14,148 vendor/hmmer/src/p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-09-19T00:43:14,149 371 | ret_obj->lnP = *((double *) &host_64bit); 2023-09-19T00:43:14,149 | ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:14,150 vendor/hmmer/src/p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-09-19T00:43:14,151 398 | ret_obj->scores_per_pos[i] = *((float *) &host_32bit); 2023-09-19T00:43:14,151 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-19T00:43:14,152 vendor/hmmer/src/p7_domain.c:404:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:14,152 404 | if(ptr - (buf + *n) != obj_size){ 2023-09-19T00:43:14,153 | ^~ 2023-09-19T00:43:14,154 In file included from vendor/hmmer/src/p7_gmxb.c:4: 2023-09-19T00:43:14,154 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-09-19T00:43:14,155 829 | #error "No vector implementation enabled" 2023-09-19T00:43:14,156 | ^~~~~ 2023-09-19T00:43:14,156 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:14,157 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-09-19T00:43:14,158 | ^~~~~~ 2023-09-19T00:43:14,158 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:14,159 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-09-19T00:43:14,159 | ^~~~~~ 2023-09-19T00:43:14,160 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:14,160 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-09-19T00:43:14,161 | ^~~~~~ 2023-09-19T00:43:14,162 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:14,162 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-09-19T00:43:14,163 | ^~~~~~ 2023-09-19T00:43:14,163 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,164 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-09-19T00:43:14,165 | ^~~~~~~~~~~ 2023-09-19T00:43:14,165 | P7_PROFILE 2023-09-19T00:43:14,166 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,166 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-09-19T00:43:14,167 | ^~~~~~~~~~~ 2023-09-19T00:43:14,168 | P7_PROFILE 2023-09-19T00:43:14,168 In file included from vendor/hmmer/src/p7_prior.c:11: 2023-09-19T00:43:14,169 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-09-19T00:43:14,170 829 | #error "No vector implementation enabled" 2023-09-19T00:43:14,170 | ^~~~~ 2023-09-19T00:43:14,171 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,172 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-09-19T00:43:14,172 | ^~~~~~~~~~~ 2023-09-19T00:43:14,173 | P7_PROFILE 2023-09-19T00:43:14,174 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:14,174 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-09-19T00:43:14,175 | ^~~~~~ 2023-09-19T00:43:14,176 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:14,177 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-09-19T00:43:14,177 | ^~~~~~ 2023-09-19T00:43:14,178 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:14,179 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-09-19T00:43:14,179 | ^~~~~~ 2023-09-19T00:43:14,180 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:14,180 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-09-19T00:43:14,181 | ^~~~~~ 2023-09-19T00:43:14,182 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c 2023-09-19T00:43:14,183 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,183 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-09-19T00:43:14,184 | ^~~~~~~~~~~ 2023-09-19T00:43:14,185 | P7_PROFILE 2023-09-19T00:43:14,185 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/fm_general.o 2023-09-19T00:43:14,186 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:14,186 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-09-19T00:43:14,187 | ^~~~~~~~~~~ 2023-09-19T00:43:14,187 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,188 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-09-19T00:43:14,188 | ^~~~~~~~~~~ 2023-09-19T00:43:14,189 | P7_PROFILE 2023-09-19T00:43:14,189 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,190 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-09-19T00:43:14,190 | ^~~~~~~~~~~ 2023-09-19T00:43:14,191 | P7_PROFILE 2023-09-19T00:43:14,191 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,192 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-09-19T00:43:14,193 | ^~~~~~~~~~~ 2023-09-19T00:43:14,193 | P7_PROFILE 2023-09-19T00:43:14,194 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,195 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-09-19T00:43:14,195 | ^~~~~~~~~~~ 2023-09-19T00:43:14,196 | P7_PROFILE 2023-09-19T00:43:14,197 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,197 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-09-19T00:43:14,198 | ^~~~~~~~~~~ 2023-09-19T00:43:14,199 | P7_PROFILE 2023-09-19T00:43:14,199 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,200 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-09-19T00:43:14,201 | ^~~~~~~~~~~ 2023-09-19T00:43:14,201 | P7_PROFILE 2023-09-19T00:43:14,202 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,203 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,203 | ^~~~~~~~~~~ 2023-09-19T00:43:14,204 | P7_PROFILE 2023-09-19T00:43:14,204 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:14,205 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-09-19T00:43:14,206 | ^~~~~~~~~~~ 2023-09-19T00:43:14,206 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,207 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,207 | ^~~~~~ 2023-09-19T00:43:14,208 | P7_GMX 2023-09-19T00:43:14,209 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,209 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,210 | ^~~~~~ 2023-09-19T00:43:14,211 | P7_GMX 2023-09-19T00:43:14,211 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,212 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-09-19T00:43:14,213 | ^~~~~~~~~~~ 2023-09-19T00:43:14,213 | P7_PROFILE 2023-09-19T00:43:14,214 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,214 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,215 | ^~~~~~ 2023-09-19T00:43:14,216 | P7_GMX 2023-09-19T00:43:14,217 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,218 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-09-19T00:43:14,218 | ^~~~~~~~~~~ 2023-09-19T00:43:14,219 | P7_PROFILE 2023-09-19T00:43:14,219 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,220 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,221 | ^~~~~~ 2023-09-19T00:43:14,221 | P7_GMX 2023-09-19T00:43:14,222 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,223 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,223 | ^~~~~~~~~~~ 2023-09-19T00:43:14,224 | P7_PROFILE 2023-09-19T00:43:14,225 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,225 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-09-19T00:43:14,226 | ^~~~~~~~~~~ 2023-09-19T00:43:14,227 | P7_PROFILE 2023-09-19T00:43:14,227 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,228 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,229 | ^~~~~~ 2023-09-19T00:43:14,229 | P7_GMX 2023-09-19T00:43:14,230 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,231 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-09-19T00:43:14,232 | ^~~~~~~~~~~ 2023-09-19T00:43:14,232 | P7_PROFILE 2023-09-19T00:43:14,233 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,234 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,234 | ^~~~~~ 2023-09-19T00:43:14,235 | P7_GMX 2023-09-19T00:43:14,236 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,236 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-09-19T00:43:14,237 | ^~~~~~~~~~~ 2023-09-19T00:43:14,238 | P7_PROFILE 2023-09-19T00:43:14,239 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:14,239 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-09-19T00:43:14,240 | ^~~~~~~~~~~ 2023-09-19T00:43:14,240 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:14,241 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-09-19T00:43:14,241 | ^~~~~~~~~~~ 2023-09-19T00:43:14,242 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,243 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,243 | ^~~~~~ 2023-09-19T00:43:14,244 | P7_GMX 2023-09-19T00:43:14,245 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,245 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-09-19T00:43:14,246 | ^~~~~~~~~~~ 2023-09-19T00:43:14,247 | P7_PROFILE 2023-09-19T00:43:14,247 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,248 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,249 | ^~~~~~ 2023-09-19T00:43:14,249 | P7_GMX 2023-09-19T00:43:14,250 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,251 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-09-19T00:43:14,251 | ^~~~~~~~~~~ 2023-09-19T00:43:14,252 | P7_PROFILE 2023-09-19T00:43:14,253 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,253 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-09-19T00:43:14,254 | ^~~~~~~~~~~ 2023-09-19T00:43:14,255 | P7_PROFILE 2023-09-19T00:43:14,255 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,256 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-09-19T00:43:14,257 | ^~~~~~~~~~~ 2023-09-19T00:43:14,257 | P7_PROFILE 2023-09-19T00:43:14,258 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,259 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-09-19T00:43:14,259 | ^~~~~~~~~~~ 2023-09-19T00:43:14,260 | P7_PROFILE 2023-09-19T00:43:14,261 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,261 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-09-19T00:43:14,262 | ^~~~~~~~~~~ 2023-09-19T00:43:14,262 | P7_PROFILE 2023-09-19T00:43:14,263 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:14,264 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-09-19T00:43:14,264 | ^~~~~~~~~~~ 2023-09-19T00:43:14,265 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:14,266 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-09-19T00:43:14,266 | ^~~~~~~~~~~ 2023-09-19T00:43:14,267 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,267 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-09-19T00:43:14,268 | ^~~~~~~~~~~ 2023-09-19T00:43:14,269 | P7_PROFILE 2023-09-19T00:43:14,270 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,270 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-09-19T00:43:14,271 | ^~~~~~~~~~~ 2023-09-19T00:43:14,272 | P7_PROFILE 2023-09-19T00:43:14,273 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,273 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-09-19T00:43:14,274 | ^~~~~~~~~~~ 2023-09-19T00:43:14,275 | P7_PROFILE 2023-09-19T00:43:14,276 In file included from vendor/hmmer/src/p7_trace.c:22: 2023-09-19T00:43:14,277 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-09-19T00:43:14,277 829 | #error "No vector implementation enabled" 2023-09-19T00:43:14,278 | ^~~~~ 2023-09-19T00:43:14,279 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:14,280 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-09-19T00:43:14,280 | ^~~~~~ 2023-09-19T00:43:14,281 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:14,282 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-09-19T00:43:14,282 | ^~~~~~ 2023-09-19T00:43:14,283 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:14,284 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-09-19T00:43:14,284 | ^~~~~~ 2023-09-19T00:43:14,285 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:14,286 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-09-19T00:43:14,287 | ^~~~~~ 2023-09-19T00:43:14,288 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,288 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-09-19T00:43:14,289 | ^~~~~~~~~~~ 2023-09-19T00:43:14,289 | P7_PROFILE 2023-09-19T00:43:14,290 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,291 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-09-19T00:43:14,292 | ^~~~~~~~~~~ 2023-09-19T00:43:14,292 | P7_PROFILE 2023-09-19T00:43:14,293 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,294 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-09-19T00:43:14,295 | ^~~~~~~~~~~ 2023-09-19T00:43:14,295 | P7_PROFILE 2023-09-19T00:43:14,296 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,297 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-09-19T00:43:14,298 | ^~~~~~~~~~~ 2023-09-19T00:43:14,299 | P7_PROFILE 2023-09-19T00:43:14,299 In file included from vendor/hmmer/src/fm_general.c:14: 2023-09-19T00:43:14,300 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-09-19T00:43:14,301 829 | #error "No vector implementation enabled" 2023-09-19T00:43:14,302 | ^~~~~ 2023-09-19T00:43:14,302 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:14,303 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-09-19T00:43:14,304 | ^~~~~~ 2023-09-19T00:43:14,305 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:14,306 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-09-19T00:43:14,306 | ^~~~~~~~~~~ 2023-09-19T00:43:14,307 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:14,308 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-09-19T00:43:14,309 | ^~~~~~ 2023-09-19T00:43:14,310 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:14,311 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-09-19T00:43:14,312 | ^~~~~~ 2023-09-19T00:43:14,313 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-09-19T00:43:14,313 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-09-19T00:43:14,314 | ^~~~~~ 2023-09-19T00:43:14,315 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,316 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-09-19T00:43:14,316 | ^~~~~~~~~~~ 2023-09-19T00:43:14,317 | P7_PROFILE 2023-09-19T00:43:14,318 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,319 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-09-19T00:43:14,319 | ^~~~~~~~~~~ 2023-09-19T00:43:14,321 | P7_PROFILE 2023-09-19T00:43:14,322 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,322 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-09-19T00:43:14,323 | ^~~~~~~~~~~ 2023-09-19T00:43:14,324 | P7_PROFILE 2023-09-19T00:43:14,324 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,325 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-09-19T00:43:14,326 | ^~~~~~~~~~~ 2023-09-19T00:43:14,327 | P7_PROFILE 2023-09-19T00:43:14,327 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,328 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-09-19T00:43:14,329 | ^~~~~~~~~~~ 2023-09-19T00:43:14,330 | P7_PROFILE 2023-09-19T00:43:14,330 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,331 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-09-19T00:43:14,332 | ^~~~~~~~~~~ 2023-09-19T00:43:14,333 | P7_PROFILE 2023-09-19T00:43:14,334 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,334 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,335 | ^~~~~~~~~~~ 2023-09-19T00:43:14,336 | P7_PROFILE 2023-09-19T00:43:14,337 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:14,338 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-09-19T00:43:14,338 | ^~~~~~~~~~~ 2023-09-19T00:43:14,338 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,339 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,340 | ^~~~~~ 2023-09-19T00:43:14,340 | P7_GMX 2023-09-19T00:43:14,341 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,342 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-09-19T00:43:14,342 | ^~~~~~~~~~~ 2023-09-19T00:43:14,343 | P7_PROFILE 2023-09-19T00:43:14,344 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,345 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,345 | ^~~~~~ 2023-09-19T00:43:14,346 | P7_GMX 2023-09-19T00:43:14,347 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,347 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-09-19T00:43:14,348 | ^~~~~~~~~~~ 2023-09-19T00:43:14,348 | P7_PROFILE 2023-09-19T00:43:14,349 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,350 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,351 | ^~~~~~ 2023-09-19T00:43:14,352 | P7_GMX 2023-09-19T00:43:14,352 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,353 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,354 | ^~~~~~~~~~~ 2023-09-19T00:43:14,354 | P7_PROFILE 2023-09-19T00:43:14,355 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,356 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,357 | ^~~~~~ 2023-09-19T00:43:14,357 | P7_GMX 2023-09-19T00:43:14,358 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,359 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,359 | ^~~~~~ 2023-09-19T00:43:14,360 | P7_GMX 2023-09-19T00:43:14,361 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,361 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,362 | ^~~~~~ 2023-09-19T00:43:14,363 | P7_GMX 2023-09-19T00:43:14,363 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,364 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-09-19T00:43:14,365 | ^~~~~~~~~~~ 2023-09-19T00:43:14,366 | P7_PROFILE 2023-09-19T00:43:14,366 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,368 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,368 | ^~~~~~ 2023-09-19T00:43:14,369 | P7_GMX 2023-09-19T00:43:14,370 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,371 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-09-19T00:43:14,371 | ^~~~~~~~~~~ 2023-09-19T00:43:14,372 | P7_PROFILE 2023-09-19T00:43:14,373 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-09-19T00:43:14,373 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-09-19T00:43:14,374 | ^~~~~~ 2023-09-19T00:43:14,375 | P7_GMX 2023-09-19T00:43:14,375 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,376 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-09-19T00:43:14,377 | ^~~~~~~~~~~ 2023-09-19T00:43:14,378 | P7_PROFILE 2023-09-19T00:43:14,378 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:14,379 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-09-19T00:43:14,379 | ^~~~~~~~~~~ 2023-09-19T00:43:14,380 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:14,381 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-09-19T00:43:14,381 | ^~~~~~~~~~~ 2023-09-19T00:43:14,382 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,382 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-09-19T00:43:14,383 | ^~~~~~~~~~~ 2023-09-19T00:43:14,384 | P7_PROFILE 2023-09-19T00:43:14,384 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,385 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-09-19T00:43:14,385 | ^~~~~~~~~~~ 2023-09-19T00:43:14,386 | P7_PROFILE 2023-09-19T00:43:14,387 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,387 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-09-19T00:43:14,388 | ^~~~~~~~~~~ 2023-09-19T00:43:14,389 | P7_PROFILE 2023-09-19T00:43:14,389 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,390 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-09-19T00:43:14,391 | ^~~~~~~~~~~ 2023-09-19T00:43:14,391 | P7_PROFILE 2023-09-19T00:43:14,392 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,393 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-09-19T00:43:14,394 | ^~~~~~~~~~~ 2023-09-19T00:43:14,395 | P7_PROFILE 2023-09-19T00:43:14,396 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:14,397 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-09-19T00:43:14,398 | ^~~~~~~~~~~ 2023-09-19T00:43:14,398 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-09-19T00:43:14,399 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-09-19T00:43:14,400 | ^~~~~~~~~~~ 2023-09-19T00:43:14,401 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,401 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-09-19T00:43:14,402 | ^~~~~~~~~~~ 2023-09-19T00:43:14,403 | P7_PROFILE 2023-09-19T00:43:14,403 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,404 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-09-19T00:43:14,405 | ^~~~~~~~~~~ 2023-09-19T00:43:14,405 | P7_PROFILE 2023-09-19T00:43:14,406 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,407 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-09-19T00:43:14,407 | ^~~~~~~~~~~ 2023-09-19T00:43:14,408 | P7_PROFILE 2023-09-19T00:43:14,409 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-09-19T00:43:14,409 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-09-19T00:43:14,410 | ^~~~~~~~~~~ 2023-09-19T00:43:14,410 | P7_PROFILE 2023-09-19T00:43:14,411 vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’: 2023-09-19T00:43:14,412 vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:14,413 292 | if (ranges[lo].lower > end) return -1; 2023-09-19T00:43:14,414 | ^ 2023-09-19T00:43:14,414 vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:14,415 293 | if (ranges[hi].upper < start) return -1; 2023-09-19T00:43:14,416 | ^ 2023-09-19T00:43:14,417 vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:14,418 297 | if (ranges[mid].lower < start) lo = mid + 1; // too far left 2023-09-19T00:43:14,418 | ^ 2023-09-19T00:43:14,420 vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:14,420 302 | if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2023-09-19T00:43:14,421 | ^~ 2023-09-19T00:43:14,422 vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:14,422 302 | if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2023-09-19T00:43:14,423 | ^~ 2023-09-19T00:43:14,424 vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:14,424 303 | else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2023-09-19T00:43:14,426 | ^~ 2023-09-19T00:43:14,427 vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:14,427 303 | else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2023-09-19T00:43:14,428 | ^~ 2023-09-19T00:43:14,428 vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’: 2023-09-19T00:43:14,429 vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:14,429 350 | while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2023-09-19T00:43:14,430 | ^~ 2023-09-19T00:43:14,431 vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-19T00:43:14,431 350 | while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2023-09-19T00:43:14,432 | ^~ 2023-09-19T00:43:14,432 In file included from vendor/hmmer/src/fm_general.c:12: 2023-09-19T00:43:14,433 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:43:14,434 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-09-19T00:43:14,434 | ^ 2023-09-19T00:43:14,435 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2023-09-19T00:43:14,436 351 | int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2023-09-19T00:43:14,436 | ^~~~~~~ 2023-09-19T00:43:14,437 vendor/easel/easel.h:417:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-09-19T00:43:14,438 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-09-19T00:43:14,438 | ^~~ 2023-09-19T00:43:14,439 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2023-09-19T00:43:14,440 351 | int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2023-09-19T00:43:14,440 | ^~~~~~~ 2023-09-19T00:43:14,441 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:43:14,441 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-09-19T00:43:14,442 | ^ 2023-09-19T00:43:14,443 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2023-09-19T00:43:14,443 352 | int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2023-09-19T00:43:14,444 | ^~~~~~~ 2023-09-19T00:43:14,444 vendor/easel/easel.h:416:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-09-19T00:43:14,445 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-09-19T00:43:14,446 | ^~~ 2023-09-19T00:43:14,447 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2023-09-19T00:43:14,447 352 | int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2023-09-19T00:43:14,448 | ^~~~~~~ 2023-09-19T00:43:14,448 vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:43:14,449 353 | for (j= start; j<=end; j++) 2023-09-19T00:43:14,449 | ^~ 2023-09-19T00:43:14,450 vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’: 2023-09-19T00:43:14,450 vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2023-09-19T00:43:14,451 537 | (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2023-09-19T00:43:14,451 | ^~ 2023-09-19T00:43:14,452 vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2023-09-19T00:43:14,453 538 | (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2023-09-19T00:43:14,453 | ^~ 2023-09-19T00:43:14,454 vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’: 2023-09-19T00:43:14,454 vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:14,455 620 | for (i=0; iseq_count; i++) { 2023-09-19T00:43:14,455 | ^ 2023-09-19T00:43:14,456 vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:43:14,456 638 | fread(meta->seq_data[i].name, sizeof(char), meta->seq_data[i].name_length+1 , meta->fp) != meta->seq_data[i].name_length+1 || 2023-09-19T00:43:14,457 | ^~ 2023-09-19T00:43:14,458 vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:43:14,458 639 | fread(meta->seq_data[i].acc, sizeof(char), meta->seq_data[i].acc_length+1 , meta->fp) != meta->seq_data[i].acc_length+1 || 2023-09-19T00:43:14,459 | ^~ 2023-09-19T00:43:14,460 vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:43:14,460 640 | fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) != meta->seq_data[i].source_length+1 || 2023-09-19T00:43:14,461 | ^~ 2023-09-19T00:43:14,462 vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-19T00:43:14,462 641 | fread(meta->seq_data[i].desc, sizeof(char), meta->seq_data[i].desc_length+1 , meta->fp) != meta->seq_data[i].desc_length+1 2023-09-19T00:43:14,463 | ^~ 2023-09-19T00:43:14,464 vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:14,464 651 | for (i=0; iambig_list->count; i++) { 2023-09-19T00:43:14,465 | ^ 2023-09-19T00:43:14,465 vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:14,466 663 | for (i=0; iseq_count; i++) 2023-09-19T00:43:14,466 | ^ 2023-09-19T00:43:14,467 vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’: 2023-09-19T00:43:14,468 vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-19T00:43:14,468 727 | for (i=0; iseq_count; i++) { 2023-09-19T00:43:14,469 | ^ 2023-09-19T00:43:14,470 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-19T00:43:14,594 ERROR: [present-rich] Building wheel for pyhmmer (pyproject.toml) exited with 1 2023-09-19T00:43:14,608 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpl93b9v6o[/] 2023-09-19T00:43:14,608 [bold magenta]cwd[/]: /tmp/pip-wheel-d5lt2k56/pyhmmer_32e77c928bf746c59bf6935646ed9b11 2023-09-19T00:43:14,609 Building wheel for pyhmmer (pyproject.toml): finished with status 'error' 2023-09-19T00:43:14,611 ERROR: Failed building wheel for pyhmmer 2023-09-19T00:43:14,613 Failed to build pyhmmer 2023-09-19T00:43:14,615 ERROR: Failed to build one or more wheels 2023-09-19T00:43:14,616 Exception information: 2023-09-19T00:43:14,616 Traceback (most recent call last): 2023-09-19T00:43:14,616 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-19T00:43:14,616 status = run_func(*args) 2023-09-19T00:43:14,616 ^^^^^^^^^^^^^^^ 2023-09-19T00:43:14,616 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-19T00:43:14,616 return func(self, options, args) 2023-09-19T00:43:14,616 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-19T00:43:14,616 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-19T00:43:14,616 raise CommandError("Failed to build one or more wheels") 2023-09-19T00:43:14,616 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-19T00:43:14,620 Removed build tracker: '/tmp/pip-build-tracker-p1ldwojv'