2023-09-20T03:53:08,097 Created temporary directory: /tmp/pip-build-tracker-7lqluh_a 2023-09-20T03:53:08,098 Initialized build tracking at /tmp/pip-build-tracker-7lqluh_a 2023-09-20T03:53:08,098 Created build tracker: /tmp/pip-build-tracker-7lqluh_a 2023-09-20T03:53:08,099 Entered build tracker: /tmp/pip-build-tracker-7lqluh_a 2023-09-20T03:53:08,099 Created temporary directory: /tmp/pip-wheel-0gwi7bwb 2023-09-20T03:53:08,102 Created temporary directory: /tmp/pip-ephem-wheel-cache-5gyraj0a 2023-09-20T03:53:08,130 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-20T03:53:08,134 2 location(s) to search for versions of openbabel-wheel: 2023-09-20T03:53:08,134 * https://pypi.org/simple/openbabel-wheel/ 2023-09-20T03:53:08,134 * https://www.piwheels.org/simple/openbabel-wheel/ 2023-09-20T03:53:08,134 Fetching project page and analyzing links: https://pypi.org/simple/openbabel-wheel/ 2023-09-20T03:53:08,135 Getting page https://pypi.org/simple/openbabel-wheel/ 2023-09-20T03:53:08,137 Found index url https://pypi.org/simple/ 2023-09-20T03:53:08,278 Fetched page https://pypi.org/simple/openbabel-wheel/ as application/vnd.pypi.simple.v1+json 2023-09-20T03:53:08,298 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/33/fa/ee31663181b121ef9aaa90f7bfafcf64afc06b07854685fa06e5cd1b96e4/openbabel_wheel-3.1.1.3-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,299 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/b3/f2/8327b76b3305de6dbb0e4bb58120d47f9e9b5bed4720d1806a310e95d080/openbabel_wheel-3.1.1.3-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,299 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/ff/d6/64ed1e9ad9cc39b40057cea9980b071c1d563d9fa22baf671429a635076e/openbabel_wheel-3.1.1.3-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,300 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/c4/86/d67f7f31e195333964147c7f5a34c4ec957cd1573ba8830b4c0d4e109346/openbabel_wheel-3.1.1.3-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,301 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/81/d3/3c7f15e68521f09a05e24301fa50f4c53b50d576b8e214dc64c763dae668/openbabel_wheel-3.1.1.4-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,301 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/22/22/eb96f734f889ccdf31be3652a7f3c39ecbda1a8e280b91188346670ff46d/openbabel_wheel-3.1.1.4-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,302 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/fe/cb/14825052ee7d746d2bae30527009222644625970644901b34eada5e3b122/openbabel_wheel-3.1.1.4-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,303 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/89/03/5695ab953075df2f5cc8af36098fa24ff03d8538049a9cb06a5c90ab7edf/openbabel_wheel-3.1.1.4-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,303 Found link https://files.pythonhosted.org/packages/92/c5/e010bb31c67383ceeaf724fe945b2cc7de1242ad9e6f673af111f760e22a/openbabel-wheel-3.1.1.5.tar.gz (from 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https://files.pythonhosted.org/packages/60/f7/07147ae684cb4dc09ddd8673d4c8d54812ff683a3021c35b558ca1059c5b/openbabel_wheel-3.1.1.5-cp39-cp39-manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,308 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/19/7f/b1ccbd6996ffe3646823a5a5a38a4aabce657142d467ee85f70d1889bda7/openbabel_wheel-3.1.1.5-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,308 Found link https://files.pythonhosted.org/packages/81/b8/2b5296b157d28563ce7c175ec9d0fad4a4e0111409bdc5489d3673b0ec9f/openbabel-wheel-3.1.1.6.tar.gz (from https://pypi.org/simple/openbabel-wheel/), version: 3.1.1.6 2023-09-20T03:53:08,309 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/a5/73/e8bf6feaa5aae7d6bbab6c13529a2114852146dae8a24538084a0638b1f1/openbabel_wheel-3.1.1.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,310 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/e1/88/40106bae3c6e3c51a72ef2b0caa98b491848597dd6efd138603a8e1baa30/openbabel_wheel-3.1.1.6-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,310 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/04/a6/0e1b410431385845fb478864ec9e7babd6689ee0159240edbf91a034b1fc/openbabel_wheel-3.1.1.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,311 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/03/db/53491ecadd92259ecd80323ea687633f7e276b22749d90f4e4630d2087c1/openbabel_wheel-3.1.1.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,311 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/31/a8/32475ff9beb3bb433b346326de200f3b7f3740b706d9d721c4eb724b7577/openbabel_wheel-3.1.1.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,312 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/76/77/9d597587e0ee0a38cad8005f71b81937f79d5ad99c4416dd0df3518e4d14/openbabel_wheel-3.1.1.7-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,313 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/d5/d4/889713329308152e46c8eb4b03ba52a5e8984f996d84fc4d3473c85a3346/openbabel_wheel-3.1.1.7-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,314 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/0a/08/c996a007025912e8742fe2d9ecf0a6266b729bc1cd11369ca5ac62c2c792/openbabel_wheel-3.1.1.7-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,314 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/d1/ca/27c68e8061300f9404023f7bc67b1ed4a93c52dc5cc15d3adff43262cd13/openbabel_wheel-3.1.1.7-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,314 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/ec/1e/746bac2352a5edf667ee13c461e71b57bf97269c8258da28899fbfc00f1a/openbabel_wheel-3.1.1.7-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,315 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/4e/b0/fd4f4ee730a03ed0f23b3c0fff5246e6fbc452ee4ef9bddcd7efdb5454ee/openbabel_wheel-3.1.1.8-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-20T03:53:08,316 Found link https://files.pythonhosted.org/packages/89/92/e71b4aed2c2c315a02b599ce257f9816b6a1729ea3618d2858598fdd99d1/openbabel-wheel-3.1.1.10.tar.gz (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7), version: 3.1.1.10 2023-09-20T03:53:08,316 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/ae/f6/62297d8503f29859ee6782a4ecf44e7aa802b2a98b72101b59e98fb32106/openbabel_wheel-3.1.1.10-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-20T03:53:08,317 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/7f/66/7965583f0534dab51ff1da031b85183a5d101eba575602b9b1211c5fec24/openbabel_wheel-3.1.1.10-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-20T03:53:08,318 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/9d/91/016f7e5dfc531233b7bb43d7b5c727c8d2644c279121c7699bef5f495c2c/openbabel_wheel-3.1.1.10-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-20T03:53:08,318 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/ee/e4/58b46fa179d736c0d64c7e98d23623bca4bf0ccec43341b203eb07cf5e60/openbabel_wheel-3.1.1.10-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-20T03:53:08,319 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/91/88/ce2660fa8328eb39924ff5feb65fb9683c279f397e0e0546740aa7037a95/openbabel_wheel-3.1.1.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-20T03:53:08,320 Found link https://files.pythonhosted.org/packages/29/ab/49f1739755148867821cf8847a988aa203a82c2b302790e6a1bbf0d28be5/openbabel-wheel-3.1.1.11.tar.gz (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7), version: 3.1.1.11 2023-09-20T03:53:08,321 Skipping link: No binaries permitted for openbabel-wheel: 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https://files.pythonhosted.org/packages/52/64/e4e7d9586211af1da0e9b105eb1e832a238664230b2de04b8f59e76d2a87/openbabel_wheel-3.1.1.17-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-20T03:53:08,363 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/1f/96/f68a43c65f48ec9d94ebf8c9feb03a0ef623523293ff1dd4d92a2932f2a3/openbabel_wheel-3.1.1.17-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-20T03:53:08,363 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/8f/9a/e54324c912f9668bf59d7535ca941aa7da75246ec9f84133f46a30553bd3/openbabel_wheel-3.1.1.17-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-20T03:53:08,364 Skipping link: No binaries permitted for openbabel-wheel: https://files.pythonhosted.org/packages/5a/ab/edca6c6f979e3e1c05282ab97b8f0bf1cdab7fa6212dff71fa5de012ac95/openbabel_wheel-3.1.1.17-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-20T03:53:08,365 Fetching project page and analyzing links: https://www.piwheels.org/simple/openbabel-wheel/ 2023-09-20T03:53:08,365 Getting page https://www.piwheels.org/simple/openbabel-wheel/ 2023-09-20T03:53:08,367 Found index url https://www.piwheels.org/simple/ 2023-09-20T03:53:08,629 Fetched page https://www.piwheels.org/simple/openbabel-wheel/ as text/html 2023-09-20T03:53:08,632 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.16-cp39-cp39-linux_armv7l.whl#sha256=64dcd364ae6edf579234a4b11bafd60b3383a6b2f4a28bf986f1348aa533159b (from https://www.piwheels.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-20T03:53:08,633 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.16-cp39-cp39-linux_armv6l.whl#sha256=64dcd364ae6edf579234a4b11bafd60b3383a6b2f4a28bf986f1348aa533159b (from https://www.piwheels.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-20T03:53:08,634 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.16-cp37-cp37m-linux_armv7l.whl#sha256=48b11d06da0f42200cd3ef56bf05c0c8e26da5c5b64f483318fac00388ee4059 (from https://www.piwheels.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-20T03:53:08,635 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.16-cp37-cp37m-linux_armv6l.whl#sha256=48b11d06da0f42200cd3ef56bf05c0c8e26da5c5b64f483318fac00388ee4059 (from https://www.piwheels.org/simple/openbabel-wheel/) (requires-python:>=3.7) 2023-09-20T03:53:08,635 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.6-cp37-cp37m-linux_armv7l.whl#sha256=309b5a8e1c7557e216b8004b4e95f61b650be6662ddfe572f244e4236234a399 (from https://www.piwheels.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,635 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.6-cp37-cp37m-linux_armv6l.whl#sha256=309b5a8e1c7557e216b8004b4e95f61b650be6662ddfe572f244e4236234a399 (from https://www.piwheels.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,636 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.5-cp39-cp39-linux_armv7l.whl#sha256=e964a372e696d5ca62dde5671abf124b35601d8b40f03af847b30f79066876a2 (from https://www.piwheels.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,636 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.5-cp39-cp39-linux_armv6l.whl#sha256=e964a372e696d5ca62dde5671abf124b35601d8b40f03af847b30f79066876a2 (from https://www.piwheels.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,637 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.5-cp37-cp37m-linux_armv7l.whl#sha256=8a27ede797ba041ef6b2609cdac8cfdc22387b1e00760cda2f2bae2fb59f69af (from https://www.piwheels.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,637 Skipping link: No binaries permitted for openbabel-wheel: https://www.piwheels.org/simple/openbabel-wheel/openbabel_wheel-3.1.1.5-cp37-cp37m-linux_armv6l.whl#sha256=8a27ede797ba041ef6b2609cdac8cfdc22387b1e00760cda2f2bae2fb59f69af (from https://www.piwheels.org/simple/openbabel-wheel/) 2023-09-20T03:53:08,638 Skipping link: not a file: https://www.piwheels.org/simple/openbabel-wheel/ 2023-09-20T03:53:08,639 Skipping link: not a file: https://pypi.org/simple/openbabel-wheel/ 2023-09-20T03:53:08,658 Given no hashes to check 1 links for project 'openbabel-wheel': discarding no candidates 2023-09-20T03:53:08,675 Collecting openbabel-wheel==3.1.1.16 2023-09-20T03:53:08,678 Created temporary directory: /tmp/pip-unpack-s3rhmnsb 2023-09-20T03:53:08,817 Downloading openbabel-wheel-3.1.1.16.tar.gz (36.8 MB) 2023-09-20T03:54:49,737 Added openbabel-wheel==3.1.1.16 from https://files.pythonhosted.org/packages/99/96/147235a4c317f7ec15317b956d26a04fff1be518b459cf524b6aef12420b/openbabel-wheel-3.1.1.16.tar.gz to build tracker '/tmp/pip-build-tracker-7lqluh_a' 2023-09-20T03:54:49,747 Created temporary directory: /tmp/pip-build-env-x360gvss 2023-09-20T03:54:49,753 Installing build dependencies: started 2023-09-20T03:54:49,754 Running command pip subprocess to install build dependencies 2023-09-20T03:54:50,983 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-20T03:54:51,516 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-20T03:54:53,139 Collecting setuptools>=61 2023-09-20T03:54:53,140 Obtaining dependency information for setuptools>=61 from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-20T03:54:53,147 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-20T03:54:53,433 Collecting setuptools_scm[toml]>=6.2 2023-09-20T03:54:53,448 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.1.0-py3-none-any.whl (43 kB) 2023-09-20T03:54:53,663 Collecting wheel 2023-09-20T03:54:53,679 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-20T03:54:53,917 Collecting cmake_build_extension 2023-09-20T03:54:53,935 Using cached https://www.piwheels.org/simple/cmake-build-extension/cmake_build_extension-0.5.1-py3-none-any.whl (13 kB) 2023-09-20T03:54:54,761 Collecting cmake 2023-09-20T03:54:55,951 Using cached https://www.piwheels.org/simple/cmake/cmake-3.24.1.1-cp311-cp311-linux_armv7l.whl (16.8 MB) 2023-09-20T03:54:56,700 Collecting ninja 2023-09-20T03:54:56,721 Using cached https://www.piwheels.org/simple/ninja/ninja-1.10.2.4-cp311-cp311-linux_armv7l.whl (115 kB) 2023-09-20T03:54:56,923 Collecting swig 2023-09-20T03:54:56,938 Downloading https://www.piwheels.org/simple/swig/swig-4.1.1-py2.py3-none-linux_armv7l.whl (1.8 MB) 2023-09-20T03:54:57,115 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 10.5 MB/s eta 0:00:00 2023-09-20T03:54:57,524 Collecting packaging>=20.0 (from setuptools_scm[toml]>=6.2) 2023-09-20T03:54:57,539 Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB) 2023-09-20T03:54:57,652 Collecting typing-extensions (from setuptools_scm[toml]>=6.2) 2023-09-20T03:54:57,653 Obtaining dependency information for typing-extensions from https://files.pythonhosted.org/packages/24/21/7d397a4b7934ff4028987914ac1044d3b7d52712f30e2ac7a2ae5bc86dd0/typing_extensions-4.8.0-py3-none-any.whl.metadata 2023-09-20T03:54:57,659 Using cached typing_extensions-4.8.0-py3-none-any.whl.metadata (3.0 kB) 2023-09-20T03:54:58,230 Collecting GitPython (from cmake_build_extension) 2023-09-20T03:54:58,231 Obtaining dependency information for GitPython from https://files.pythonhosted.org/packages/f9/94/1877b88fa3a0a30bedb43757a14f548c3b2719c8d83c16012f89564c0f3b/GitPython-3.1.36-py3-none-any.whl.metadata 2023-09-20T03:54:58,238 Using cached GitPython-3.1.36-py3-none-any.whl.metadata (12 kB) 2023-09-20T03:54:58,456 Collecting gitdb<5,>=4.0.1 (from GitPython->cmake_build_extension) 2023-09-20T03:54:58,473 Using cached https://www.piwheels.org/simple/gitdb/gitdb-4.0.10-py3-none-any.whl (62 kB) 2023-09-20T03:54:58,603 Collecting smmap<6,>=3.0.1 (from gitdb<5,>=4.0.1->GitPython->cmake_build_extension) 2023-09-20T03:54:58,604 Obtaining dependency information for smmap<6,>=3.0.1 from https://files.pythonhosted.org/packages/a7/a5/10f97f73544edcdef54409f1d839f6049a0d79df68adbc1ceb24d1aaca42/smmap-5.0.1-py3-none-any.whl.metadata 2023-09-20T03:54:58,611 Using cached smmap-5.0.1-py3-none-any.whl.metadata (4.3 kB) 2023-09-20T03:54:58,647 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-20T03:54:58,673 Using cached GitPython-3.1.36-py3-none-any.whl (189 kB) 2023-09-20T03:54:58,684 Using cached typing_extensions-4.8.0-py3-none-any.whl (31 kB) 2023-09-20T03:54:58,695 Using cached smmap-5.0.1-py3-none-any.whl (24 kB) 2023-09-20T03:55:02,353 Installing collected packages: swig, ninja, cmake, wheel, typing-extensions, smmap, setuptools, packaging, setuptools_scm, gitdb, GitPython, cmake_build_extension 2023-09-20T03:55:04,446 Creating /tmp/pip-build-env-x360gvss/overlay/local/bin 2023-09-20T03:55:04,448 changing mode of /tmp/pip-build-env-x360gvss/overlay/local/bin/swig to 755 2023-09-20T03:55:04,528 changing mode of /tmp/pip-build-env-x360gvss/overlay/local/bin/ninja to 755 2023-09-20T03:55:13,428 changing mode of /tmp/pip-build-env-x360gvss/overlay/local/bin/cmake to 755 2023-09-20T03:55:13,431 changing mode of /tmp/pip-build-env-x360gvss/overlay/local/bin/cpack to 755 2023-09-20T03:55:13,433 changing mode of /tmp/pip-build-env-x360gvss/overlay/local/bin/ctest to 755 2023-09-20T03:55:13,806 changing mode of /tmp/pip-build-env-x360gvss/overlay/local/bin/wheel to 755 2023-09-20T03:55:18,075 Successfully installed GitPython-3.1.36 cmake-3.24.1.1 cmake_build_extension-0.5.1 gitdb-4.0.10 ninja-1.10.2.4 packaging-23.1 setuptools-68.2.2 setuptools_scm-7.1.0 smmap-5.0.1 swig-4.1.1 typing-extensions-4.8.0 wheel-0.41.2 2023-09-20T03:55:18,780 Installing build dependencies: finished with status 'done' 2023-09-20T03:55:18,783 Getting requirements to build wheel: started 2023-09-20T03:55:18,784 Running command Getting requirements to build wheel 2023-09-20T03:55:24,077 running egg_info 2023-09-20T03:55:24,084 writing openbabel_wheel.egg-info/PKG-INFO 2023-09-20T03:55:24,088 writing dependency_links to openbabel_wheel.egg-info/dependency_links.txt 2023-09-20T03:55:24,090 writing top-level names to openbabel_wheel.egg-info/top_level.txt 2023-09-20T03:55:24,135 listing git files failed - pretending there aren't any 2023-09-20T03:55:24,139 reading manifest file 'openbabel_wheel.egg-info/SOURCES.txt' 2023-09-20T03:55:25,037 reading manifest template 'MANIFEST.in' 2023-09-20T03:55:44,213 adding license file 'LICENSE' 2023-09-20T03:55:46,870 writing manifest file 'openbabel_wheel.egg-info/SOURCES.txt' 2023-09-20T03:55:47,074 Getting requirements to build wheel: finished with status 'done' 2023-09-20T03:55:47,098 Created temporary directory: /tmp/pip-modern-metadata-sqvhe2q5 2023-09-20T03:55:47,100 Preparing metadata (pyproject.toml): started 2023-09-20T03:55:47,101 Running command Preparing metadata (pyproject.toml) 2023-09-20T03:55:48,664 running dist_info 2023-09-20T03:55:48,671 creating /tmp/pip-modern-metadata-sqvhe2q5/openbabel_wheel.egg-info 2023-09-20T03:55:48,678 writing /tmp/pip-modern-metadata-sqvhe2q5/openbabel_wheel.egg-info/PKG-INFO 2023-09-20T03:55:48,682 writing dependency_links to /tmp/pip-modern-metadata-sqvhe2q5/openbabel_wheel.egg-info/dependency_links.txt 2023-09-20T03:55:48,684 writing top-level names to /tmp/pip-modern-metadata-sqvhe2q5/openbabel_wheel.egg-info/top_level.txt 2023-09-20T03:55:48,685 writing manifest file '/tmp/pip-modern-metadata-sqvhe2q5/openbabel_wheel.egg-info/SOURCES.txt' 2023-09-20T03:55:48,724 listing git files failed - pretending there aren't any 2023-09-20T03:55:48,727 reading manifest file '/tmp/pip-modern-metadata-sqvhe2q5/openbabel_wheel.egg-info/SOURCES.txt' 2023-09-20T03:55:48,729 reading manifest template 'MANIFEST.in' 2023-09-20T03:56:05,952 adding license file 'LICENSE' 2023-09-20T03:56:07,231 writing manifest file '/tmp/pip-modern-metadata-sqvhe2q5/openbabel_wheel.egg-info/SOURCES.txt' 2023-09-20T03:56:07,269 creating '/tmp/pip-modern-metadata-sqvhe2q5/openbabel_wheel-3.1.1.16.dist-info' 2023-09-20T03:56:07,465 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-20T03:56:07,472 Source in /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651 has version 3.1.1.16, which satisfies requirement openbabel-wheel==3.1.1.16 from https://files.pythonhosted.org/packages/99/96/147235a4c317f7ec15317b956d26a04fff1be518b459cf524b6aef12420b/openbabel-wheel-3.1.1.16.tar.gz 2023-09-20T03:56:07,473 Removed openbabel-wheel==3.1.1.16 from https://files.pythonhosted.org/packages/99/96/147235a4c317f7ec15317b956d26a04fff1be518b459cf524b6aef12420b/openbabel-wheel-3.1.1.16.tar.gz from build tracker '/tmp/pip-build-tracker-7lqluh_a' 2023-09-20T03:56:07,480 Created temporary directory: /tmp/pip-unpack-5ycdcq54 2023-09-20T03:56:07,481 Created temporary directory: /tmp/pip-unpack-npgh5ypz 2023-09-20T03:56:07,486 Building wheels for collected packages: openbabel-wheel 2023-09-20T03:56:07,496 Created temporary directory: /tmp/pip-wheel-olcag7ss 2023-09-20T03:56:07,497 Destination directory: /tmp/pip-wheel-olcag7ss 2023-09-20T03:56:07,502 Building wheel for openbabel-wheel (pyproject.toml): started 2023-09-20T03:56:07,504 Running command Building wheel for openbabel-wheel (pyproject.toml) 2023-09-20T03:56:08,724 running bdist_wheel 2023-09-20T03:56:08,751 running build 2023-09-20T03:56:08,751 running build_py 2023-09-20T03:56:08,759 creating build 2023-09-20T03:56:08,759 creating build/lib.linux-armv7l-cpython-311 2023-09-20T03:56:08,760 creating build/lib.linux-armv7l-cpython-311/openbabel 2023-09-20T03:56:08,762 copying openbabel/__init__.py -> build/lib.linux-armv7l-cpython-311/openbabel 2023-09-20T03:56:08,764 running egg_info 2023-09-20T03:56:08,772 writing openbabel_wheel.egg-info/PKG-INFO 2023-09-20T03:56:08,778 writing dependency_links to openbabel_wheel.egg-info/dependency_links.txt 2023-09-20T03:56:08,780 writing top-level names to openbabel_wheel.egg-info/top_level.txt 2023-09-20T03:56:08,809 listing git files failed - pretending there aren't any 2023-09-20T03:56:08,812 reading manifest file 'openbabel_wheel.egg-info/SOURCES.txt' 2023-09-20T03:56:09,697 reading manifest template 'MANIFEST.in' 2023-09-20T03:56:25,679 adding license file 'LICENSE' 2023-09-20T03:56:27,889 writing manifest file 'openbabel_wheel.egg-info/SOURCES.txt' 2023-09-20T03:56:29,168 running build_ext 2023-09-20T03:56:29,688 -- The C compiler identification is GNU 12.2.0 2023-09-20T03:56:29,995 -- The CXX compiler identification is GNU 12.2.0 2023-09-20T03:56:30,061 -- Detecting C compiler ABI info 2023-09-20T03:56:30,839 -- Detecting C compiler ABI info - done 2023-09-20T03:56:30,876 -- Check for working C compiler: /usr/bin/cc - skipped 2023-09-20T03:56:30,878 -- Detecting C compile features 2023-09-20T03:56:30,880 -- Detecting C compile features - done 2023-09-20T03:56:30,899 -- Detecting CXX compiler ABI info 2023-09-20T03:56:31,733 -- Detecting CXX compiler ABI info - done 2023-09-20T03:56:31,771 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-09-20T03:56:31,773 -- Detecting CXX compile features 2023-09-20T03:56:31,776 -- Detecting CXX compile features - done 2023-09-20T03:56:31,782 CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): 2023-09-20T03:56:31,782 The OLD behavior for policy CMP0042 will be removed from a future version 2023-09-20T03:56:31,783 of CMake. 2023-09-20T03:56:31,784 The cmake-policies(7) manual explains that the OLD behaviors of all 2023-09-20T03:56:31,784 policies are deprecated and that a policy should be set to OLD only under 2023-09-20T03:56:31,785 specific short-term circumstances. Projects should be ported to the NEW 2023-09-20T03:56:31,786 behavior and not rely on setting a policy to OLD. 2023-09-20T03:56:31,792 -- Using included inchi library. 2023-09-20T03:56:31,927 -- Found LibXml2: /usr/lib/arm-linux-gnueabihf/libxml2.so (found version "2.9.14") 2023-09-20T03:56:31,979 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13") 2023-09-20T03:56:32,047 -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) 2023-09-20T03:56:32,062 -- Looking for conio.h 2023-09-20T03:56:33,211 -- Looking for conio.h - not found 2023-09-20T03:56:33,215 -- Looking for sys/time.h 2023-09-20T03:56:34,029 -- Looking for sys/time.h - found 2023-09-20T03:56:34,033 -- Looking for time.h 2023-09-20T03:56:34,812 -- Looking for time.h - found 2023-09-20T03:56:34,815 -- Looking for strings.h 2023-09-20T03:56:35,631 -- Looking for strings.h - found 2023-09-20T03:56:35,636 -- Looking for rpc/xdr.h 2023-09-20T03:56:36,318 -- Looking for rpc/xdr.h - not found 2023-09-20T03:56:36,322 -- Looking for regex.h 2023-09-20T03:56:37,188 -- Looking for regex.h - found 2023-09-20T03:56:37,192 -- Looking for C++ include sstream 2023-09-20T03:56:39,160 -- Looking for C++ include sstream - found 2023-09-20T03:56:39,164 -- Looking for rint 2023-09-20T03:56:40,430 -- Looking for rint - not found 2023-09-20T03:56:40,659 -- Looking for snprintf 2023-09-20T03:56:42,359 -- Looking for snprintf - found 2023-09-20T03:56:42,365 -- Looking for sranddev 2023-09-20T03:56:43,072 -- Looking for sranddev - not found 2023-09-20T03:56:43,076 -- Looking for strcasecmp 2023-09-20T03:56:43,893 -- Looking for strcasecmp - found 2023-09-20T03:56:43,897 -- Looking for strncasecmp 2023-09-20T03:56:44,735 -- Looking for strncasecmp - found 2023-09-20T03:56:44,736 -- Looking for dlopen in dl 2023-09-20T03:56:45,545 -- Looking for dlopen in dl - found 2023-09-20T03:56:45,549 -- Looking for sys/types.h 2023-09-20T03:56:46,364 -- Looking for sys/types.h - found 2023-09-20T03:56:46,367 -- Looking for stdint.h 2023-09-20T03:56:47,172 -- Looking for stdint.h - found 2023-09-20T03:56:47,177 -- Looking for stddef.h 2023-09-20T03:56:47,962 -- Looking for stddef.h - found 2023-09-20T03:56:47,963 -- Check size of clock_t 2023-09-20T03:56:48,991 -- Check size of clock_t - done 2023-09-20T03:56:48,993 -- Performing Test SCANDIR_NEEDS_CONST 2023-09-20T03:56:49,929 -- Performing Test SCANDIR_NEEDS_CONST - Failed 2023-09-20T03:56:49,934 -- Performing Test HAVE_GCC_VISIBILITY 2023-09-20T03:56:51,008 -- Performing Test HAVE_GCC_VISIBILITY - Success 2023-09-20T03:56:51,019 -- Checking available shared pointer... 2023-09-20T03:56:51,022 -- Performing Test HAVE_STD_SHARED_PTR 2023-09-20T03:56:52,563 -- Performing Test HAVE_STD_SHARED_PTR - Success 2023-09-20T03:56:52,565 -- Performing Test HAVE_STD_TR1_SHARED_PTR 2023-09-20T03:56:53,870 -- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed 2023-09-20T03:56:53,872 -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER 2023-09-20T03:56:55,513 -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success 2023-09-20T03:56:55,514 -- Use std::shared_ptr in memory 2023-09-20T03:56:56,339 -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) 2023-09-20T03:56:56,389 -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") 2023-09-20T03:56:56,595 -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) 2023-09-20T03:56:56,596 -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. 2023-09-20T03:56:56,597 -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. 2023-09-20T03:56:56,610 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") 2023-09-20T03:56:56,952 -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") 2023-09-20T03:56:57,907 -- Downloaded RapidJSON to /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/external/rapidjson-1.1.0. 2023-09-20T03:56:57,907 -- JSON formats will be supported. Using RapidJSON 1.1.0 at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/external/rapidjson-1.1.0/include 2023-09-20T03:56:57,924 -- Checking for module 'cairo' 2023-09-20T03:56:57,974 -- Found cairo, version 1.16.0 2023-09-20T03:56:58,147 -- Found Cairo: /usr/lib/arm-linux-gnueabihf/libcairo.so 2023-09-20T03:56:58,148 -- Cairo found. PNG output will be supported. 2023-09-20T03:56:58,360 -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") 2023-09-20T03:56:58,371 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD 2023-09-20T03:56:59,203 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success 2023-09-20T03:56:59,208 -- Found Threads: TRUE 2023-09-20T03:56:59,477 -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) 2023-09-20T03:56:59,480 -- Looking for getopt 2023-09-20T03:57:06,791 -- Looking for getopt - found 2023-09-20T03:57:06,799 -- Attempting to build the GUI 2023-09-20T03:57:06,800 -- wxWidgets not found => GUI will not be built 2023-09-20T03:57:07,158 -- Found PythonInterp: /usr/bin/python3 (found version "3.11.2") 2023-09-20T03:57:07,287 CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): 2023-09-20T03:57:07,288 Compatibility with CMake < 2.8.12 will be removed from a future version of 2023-09-20T03:57:07,288 CMake. 2023-09-20T03:57:07,289 Update the VERSION argument value or use a ... suffix to tell 2023-09-20T03:57:07,290 CMake that the project does not need compatibility with older versions. 2023-09-20T03:57:07,347 -- Found SWIG: /usr/bin/swig4.0 (found version "4.1.0") 2023-09-20T03:57:07,356 -- Found SWIG: /usr/bin/swig4.0 (found suitable version "4.1.0", minimum required is "2.0") 2023-09-20T03:57:07,908 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.11.so (found version "3.11.2") 2023-09-20T03:57:07,909 CMake Warning (dev) in scripts/CMakeLists.txt: 2023-09-20T03:57:07,909 A logical block opening on the line 2023-09-20T03:57:07,910 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/scripts/CMakeLists.txt:55 (if) 2023-09-20T03:57:07,911 closes on the line 2023-09-20T03:57:07,912 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/scripts/CMakeLists.txt:58 (endif) 2023-09-20T03:57:07,913 with mis-matching arguments. 2023-09-20T03:57:07,914 This warning is for project developers. Use -Wno-dev to suppress it. 2023-09-20T03:57:07,915 -- Python bindings will be compiled 2023-09-20T03:57:08,863 -- Configuring done 2023-09-20T03:57:10,558 -- Generating done 2023-09-20T03:57:10,977 -- Build files have been written to: /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/build/temp.linux-armv7l-cpython-311_OpenBabel 2023-09-20T03:57:15,403 [1/533] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o 2023-09-20T03:57:16,321 [2/533] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o 2023-09-20T03:57:18,049 [3/533] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o 2023-09-20T03:57:22,001 [4/533] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o 2023-09-20T03:57:26,681 [5/533] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o 2023-09-20T03:57:26,884 [6/533] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o 2023-09-20T03:57:28,703 [7/533] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o 2023-09-20T03:57:28,821 [8/533] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o 2023-09-20T03:57:28,822 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T03:57:28,823 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T03:57:28,824 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/alias.cpp:19: 2023-09-20T03:57:28,825 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T03:57:28,826 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T03:57:28,827 | ^~~~~~~~~~~~~~~ 2023-09-20T03:57:28,827 In file included from /usr/include/c++/12/string:48, 2023-09-20T03:57:28,828 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T03:57:28,829 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T03:57:28,830 from /usr/include/c++/12/ios:42, 2023-09-20T03:57:28,832 from /usr/include/c++/12/istream:38, 2023-09-20T03:57:28,833 from /usr/include/c++/12/sstream:38, 2023-09-20T03:57:28,834 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/alias.cpp:16: 2023-09-20T03:57:28,835 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T03:57:28,836 131 | struct binary_function 2023-09-20T03:57:28,837 | ^~~~~~~~~~~~~~~ 2023-09-20T03:57:33,549 [9/533] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o 2023-09-20T03:57:33,550 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/chargemodel.h:24, 2023-09-20T03:57:33,551 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/chargemodel.cpp:21: 2023-09-20T03:57:33,551 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T03:57:33,552 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T03:57:33,553 | ^~~~~~~~~~~~~~~ 2023-09-20T03:57:33,554 In file included from /usr/include/c++/12/string:48, 2023-09-20T03:57:33,555 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/dlhandler.h:24, 2023-09-20T03:57:33,556 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:23: 2023-09-20T03:57:33,557 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T03:57:33,558 131 | struct binary_function 2023-09-20T03:57:33,560 | ^~~~~~~~~~~~~~~ 2023-09-20T03:57:33,561 In file included from /usr/include/c++/12/vector:70, 2023-09-20T03:57:33,562 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/dlhandler.h:25: 2023-09-20T03:57:33,564 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T03:57:33,565 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:57:33,566 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:57:33,567 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:57:33,569 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:57:33,570 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:57:33,572 inlined from ‘void OpenBabel::OBChargeModel::FillChargeVectors(OpenBabel::OBMol&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/chargemodel.cpp:45:35: 2023-09-20T03:57:33,574 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:57:33,575 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:57:33,577 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:57:33,579 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:57:33,580 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:57:33,582 inlined from ‘void OpenBabel::OBChargeModel::FillChargeVectors(OpenBabel::OBMol&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/chargemodel.cpp:46:34: 2023-09-20T03:57:33,584 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:57:33,586 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:57:33,588 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:57:40,611 [10/533] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o 2023-09-20T03:57:40,612 In file included from /usr/include/c++/12/vector:70, 2023-09-20T03:57:40,613 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/data_utilities.h:25, 2023-09-20T03:57:40,614 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/data_utilities.cpp:28: 2023-09-20T03:57:40,615 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T03:57:40,615 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:57:40,617 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:57:40,617 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:57:40,618 In file included from /usr/include/c++/12/vector:64: 2023-09-20T03:57:40,619 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:57:40,620 inlined from ‘bool OpenBabel::extract_thermochemistry(OBMol&, bool, int*, int, double, double*, double*, double*, double*, double*, double*, double*, double*, std::vector&, double*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/data_utilities.cpp:188:26: 2023-09-20T03:57:40,621 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:57:40,622 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:57:40,623 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:57:40,625 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:57:40,625 inlined from ‘bool OpenBabel::extract_thermochemistry(OBMol&, bool, int*, int, double, double*, double*, double*, double*, double*, double*, double*, double*, std::vector&, double*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/data_utilities.cpp:189:26: 2023-09-20T03:57:40,626 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:57:40,627 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:57:40,628 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:57:40,629 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:57:40,630 inlined from ‘bool OpenBabel::extract_thermochemistry(OBMol&, bool, int*, int, double, double*, double*, double*, double*, double*, double*, double*, double*, std::vector&, double*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/data_utilities.cpp:190:26: 2023-09-20T03:57:40,631 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:57:40,632 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:57:40,633 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:57:40,634 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:57:40,635 inlined from ‘bool OpenBabel::extract_thermochemistry(OBMol&, bool, int*, int, double, double*, double*, double*, double*, double*, double*, double*, double*, std::vector&, double*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/data_utilities.cpp:191:26: 2023-09-20T03:57:40,636 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:57:40,637 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:57:40,638 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:57:40,638 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:57:40,639 inlined from ‘bool OpenBabel::extract_thermochemistry(OBMol&, bool, int*, int, double, double*, double*, double*, double*, double*, double*, double*, double*, std::vector&, double*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/data_utilities.cpp:192:26: 2023-09-20T03:57:40,640 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:57:40,641 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:57:40,642 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:57:44,452 [11/533] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o 2023-09-20T03:57:44,453 In file included from /usr/include/c++/12/vector:70, 2023-09-20T03:57:44,454 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/data.h:28, 2023-09-20T03:57:44,455 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/data.cpp:25: 2023-09-20T03:57:44,456 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBAtomHOF&}; _Tp = OpenBabel::OBAtomHOF; _Alloc = std::allocator]’: 2023-09-20T03:57:44,457 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:57:44,458 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:57:44,476 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:57:44,476 In file included from /usr/include/c++/12/vector:64: 2023-09-20T03:57:44,477 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBAtomHOF; _Alloc = std::allocator]’, 2023-09-20T03:57:44,479 inlined from ‘virtual void OpenBabel::OBAtomicHeatOfFormationTable::ParseLine(const char*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/data.cpp:120:31: 2023-09-20T03:57:44,480 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:57:44,481 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:57:44,482 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:57:46,364 [12/533] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o 2023-09-20T03:57:54,776 [13/533] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o 2023-09-20T03:57:54,778 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/descriptor.h:27, 2023-09-20T03:57:54,779 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/descriptor.cpp:23: 2023-09-20T03:57:54,781 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T03:57:54,782 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T03:57:54,784 | ^~~~~~~~~~~~~~~ 2023-09-20T03:57:54,785 In file included from /usr/include/c++/12/string:48, 2023-09-20T03:57:54,787 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T03:57:54,788 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T03:57:54,790 from /usr/include/c++/12/ios:42, 2023-09-20T03:57:54,792 from /usr/include/c++/12/istream:38, 2023-09-20T03:57:54,793 from /usr/include/c++/12/sstream:38, 2023-09-20T03:57:54,795 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/oberror.h:26, 2023-09-20T03:57:54,806 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/descriptor.cpp:20: 2023-09-20T03:57:54,807 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T03:57:54,809 131 | struct binary_function 2023-09-20T03:57:54,811 | ^~~~~~~~~~~~~~~ 2023-09-20T03:57:58,413 [14/533] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o 2023-09-20T03:57:58,415 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/fingerprint.h:28, 2023-09-20T03:57:58,416 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/fingerprint.cpp:27: 2023-09-20T03:57:58,418 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T03:57:58,420 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T03:57:58,421 | ^~~~~~~~~~~~~~~ 2023-09-20T03:57:58,423 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-20T03:57:58,425 from /usr/include/c++/12/vector:66, 2023-09-20T03:57:58,426 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/fingerprint.cpp:21: 2023-09-20T03:57:58,428 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T03:57:58,429 131 | struct binary_function 2023-09-20T03:57:58,430 | ^~~~~~~~~~~~~~~ 2023-09-20T03:57:59,572 [15/533] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o 2023-09-20T03:57:59,836 [16/533] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o 2023-09-20T03:57:59,838 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T03:57:59,839 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T03:57:59,841 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obmolecformat.h:36, 2023-09-20T03:57:59,842 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/formats/smilesformat.cpp:23: 2023-09-20T03:57:59,844 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T03:57:59,845 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T03:57:59,847 | ^~~~~~~~~~~~~~~ 2023-09-20T03:57:59,848 In file included from /usr/include/c++/12/string:48, 2023-09-20T03:57:59,849 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T03:57:59,851 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T03:57:59,852 from /usr/include/c++/12/ios:42, 2023-09-20T03:57:59,857 from /usr/include/c++/12/ostream:38, 2023-09-20T03:57:59,858 from /usr/include/c++/12/iostream:39, 2023-09-20T03:57:59,859 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:24: 2023-09-20T03:57:59,861 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T03:57:59,862 131 | struct binary_function 2023-09-20T03:57:59,863 | ^~~~~~~~~~~~~~~ 2023-09-20T03:58:00,352 [17/533] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o 2023-09-20T03:58:00,353 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T03:58:00,354 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T03:58:00,355 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/builder.cpp:31: 2023-09-20T03:58:00,356 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T03:58:00,357 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T03:58:00,358 | ^~~~~~~~~~~~~~~ 2023-09-20T03:58:00,359 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-20T03:58:00,360 from /usr/include/c++/12/vector:66, 2023-09-20T03:58:00,360 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/builder.h:23, 2023-09-20T03:58:00,361 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/builder.cpp:22: 2023-09-20T03:58:00,362 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T03:58:00,363 131 | struct binary_function 2023-09-20T03:58:00,364 | ^~~~~~~~~~~~~~~ 2023-09-20T03:58:00,365 In file included from /usr/include/c++/12/vector:70: 2023-09-20T03:58:00,367 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-20T03:58:00,368 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:58:00,370 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:58:00,371 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:58:00,372 In file included from /usr/include/c++/12/vector:64: 2023-09-20T03:58:00,374 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T03:58:00,375 inlined from ‘void OpenBabel::OBBuilder::LoadFragments()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/builder.cpp:145:25: 2023-09-20T03:58:00,376 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:00,378 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:00,379 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:00,380 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T03:58:00,381 inlined from ‘std::vector OpenBabel::OBBuilder::GetFragmentCoord(std::string)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/builder.cpp:193:25: 2023-09-20T03:58:00,382 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:00,383 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:00,385 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:00,385 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T03:58:00,388 inlined from ‘static void OpenBabel::OBBuilder::ConnectFrags(OpenBabel::OBMol&, OpenBabel::OBMol&, std::vector, std::vector, std::vector)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/builder.cpp:1448:26: 2023-09-20T03:58:00,388 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:00,389 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:00,392 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:02,154 [18/533] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o 2023-09-20T03:58:04,164 [19/533] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o 2023-09-20T03:58:04,165 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T03:58:04,171 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/format.cpp:20: 2023-09-20T03:58:04,172 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T03:58:04,173 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T03:58:04,174 | ^~~~~~~~~~~~~~~ 2023-09-20T03:58:04,178 In file included from /usr/include/c++/12/string:48, 2023-09-20T03:58:04,180 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/dlhandler.h:24, 2023-09-20T03:58:04,187 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:23: 2023-09-20T03:58:04,189 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T03:58:04,191 131 | struct binary_function 2023-09-20T03:58:04,194 | ^~~~~~~~~~~~~~~ 2023-09-20T03:58:07,823 [20/533] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o 2023-09-20T03:58:07,824 In file included from /usr/include/c++/12/vector:70, 2023-09-20T03:58:07,825 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/mol.h:44, 2023-09-20T03:58:07,826 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/grid.cpp:22: 2023-09-20T03:58:07,828 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2023-09-20T03:58:07,829 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:58:07,830 523 | vector<_Tp, _Alloc>:: 2023-09-20T03:58:07,831 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:58:07,832 In file included from /usr/include/c++/12/vector:64: 2023-09-20T03:58:07,833 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:58:07,833 inlined from ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/grid.cpp:86:19: 2023-09-20T03:58:07,834 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:07,835 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2023-09-20T03:58:07,836 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:58:14,061 [21/533] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o 2023-09-20T03:58:14,561 [22/533] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o 2023-09-20T03:58:16,551 [23/533] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o 2023-09-20T03:58:17,445 [24/533] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o 2023-09-20T03:58:20,691 [25/533] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o 2023-09-20T03:58:22,601 [26/533] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o 2023-09-20T03:58:22,602 In file included from /usr/include/c++/12/vector:70, 2023-09-20T03:58:22,603 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/mol.h:44, 2023-09-20T03:58:22,604 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/generic.cpp:25: 2023-09-20T03:58:22,605 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBAngle&}; _Tp = OpenBabel::OBAngle; _Alloc = std::allocator]’: 2023-09-20T03:58:22,606 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:58:22,607 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:58:22,608 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:58:22,609 In file included from /usr/include/c++/12/vector:64: 2023-09-20T03:58:22,610 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBAngle; _Alloc = std::allocator]’, 2023-09-20T03:58:22,611 inlined from ‘void OpenBabel::OBAngleData::SetData(OpenBabel::OBAngle&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/generic.cpp:1061:22: 2023-09-20T03:58:22,612 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:22,613 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:22,614 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:22,615 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::triple&}; _Tp = OpenBabel::triple; _Alloc = std::allocator >]’: 2023-09-20T03:58:22,616 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-20T03:58:22,618 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:58:22,618 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:58:22,619 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::triple; _Alloc = std::allocator >]’, 2023-09-20T03:58:22,620 inlined from ‘bool OpenBabel::OBTorsion::AddTorsion(OpenBabel::quad&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/generic.cpp:1278:19: 2023-09-20T03:58:22,621 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:58:22,622 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:22,623 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:22,624 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::triple; _Alloc = std::allocator >]’, 2023-09-20T03:58:22,625 inlined from ‘OpenBabel::OBTorsion::OBTorsion(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/generic.cpp:1129:19: 2023-09-20T03:58:22,626 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:58:22,627 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:22,628 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:22,629 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::triple; _Alloc = std::allocator >]’, 2023-09-20T03:58:22,630 inlined from ‘bool OpenBabel::OBTorsion::AddTorsion(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/generic.cpp:1258:19: 2023-09-20T03:58:22,632 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:58:22,633 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:22,634 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:22,635 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBOrbital&}; _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’: 2023-09-20T03:58:22,636 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:58:22,637 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:58:22,638 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:58:22,639 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-20T03:58:22,640 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:58:22,641 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T03:58:22,642 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:58:22,643 inlined from ‘std::vector OpenBabel::OBUnitCell::GetCellVectors() const’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/generic.cpp:334:16: 2023-09-20T03:58:22,644 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:22,644 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:58:22,645 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:58:22,646 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T03:58:22,647 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:58:22,648 inlined from ‘std::vector OpenBabel::OBUnitCell::GetCellVectors() const’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/generic.cpp:335:16: 2023-09-20T03:58:22,649 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:22,655 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:58:22,656 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:58:22,657 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T03:58:22,658 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:58:22,659 inlined from ‘std::vector OpenBabel::OBUnitCell::GetCellVectors() const’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/generic.cpp:336:16: 2023-09-20T03:58:22,660 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:22,661 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:58:22,662 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:58:22,663 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’, 2023-09-20T03:58:22,664 inlined from ‘void OpenBabel::OBOrbitalData::LoadClosedShellOrbitals(std::vector, std::vector >, unsigned int)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/generic.cpp:1411:33: 2023-09-20T03:58:22,665 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:22,676 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:22,677 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:22,678 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’, 2023-09-20T03:58:22,681 inlined from ‘void OpenBabel::OBOrbitalData::LoadAlphaOrbitals(std::vector, std::vector >, unsigned int)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/generic.cpp:1440:33: 2023-09-20T03:58:22,682 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:22,683 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:22,684 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:22,685 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’, 2023-09-20T03:58:22,691 inlined from ‘void OpenBabel::OBOrbitalData::LoadBetaOrbitals(std::vector, std::vector >, unsigned int)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/generic.cpp:1469:32: 2023-09-20T03:58:22,692 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:22,693 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:22,697 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:22,830 [27/533] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o 2023-09-20T03:58:27,031 [28/533] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o 2023-09-20T03:58:30,534 [29/533] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o 2023-09-20T03:58:33,481 [30/533] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o 2023-09-20T03:58:33,482 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/forcefield.h:28, 2023-09-20T03:58:33,483 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefield.cpp:24: 2023-09-20T03:58:33,484 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T03:58:33,485 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T03:58:33,486 | ^~~~~~~~~~~~~~~ 2023-09-20T03:58:33,487 In file included from /usr/include/c++/12/bits/stl_tree.h:65, 2023-09-20T03:58:33,489 from /usr/include/c++/12/set:60, 2023-09-20T03:58:33,490 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefield.cpp:22: 2023-09-20T03:58:33,491 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T03:58:33,492 131 | struct binary_function 2023-09-20T03:58:33,493 | ^~~~~~~~~~~~~~~ 2023-09-20T03:58:33,494 In file included from /usr/include/c++/12/vector:70, 2023-09-20T03:58:33,495 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/forcefield.h:22: 2023-09-20T03:58:33,496 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFConstraint&}; _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’: 2023-09-20T03:58:33,498 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:58:33,498 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:58:33,499 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:58:33,500 In file included from /usr/include/c++/12/vector:64: 2023-09-20T03:58:33,502 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’, 2023-09-20T03:58:33,502 inlined from ‘void OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefield.cpp:660:27: 2023-09-20T03:58:33,504 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:33,505 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:33,506 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:33,506 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’, 2023-09-20T03:58:33,508 inlined from ‘void OpenBabel::OBFFConstraints::AddIgnore(int)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefield.cpp:580:27: 2023-09-20T03:58:33,509 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:33,510 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:33,511 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:33,512 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’, 2023-09-20T03:58:33,513 inlined from ‘void OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefield.cpp:624:27: 2023-09-20T03:58:33,515 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:33,516 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:33,517 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:33,518 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’, 2023-09-20T03:58:33,519 inlined from ‘void OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefield.cpp:635:27: 2023-09-20T03:58:33,520 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:33,535 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:33,537 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:33,538 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’, 2023-09-20T03:58:33,539 inlined from ‘void OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefield.cpp:602:27: 2023-09-20T03:58:33,540 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:33,541 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:33,542 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:33,544 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’, 2023-09-20T03:58:33,545 inlined from ‘void OpenBabel::OBFFConstraints::AddAtomConstraint(int)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefield.cpp:591:27: 2023-09-20T03:58:33,546 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:33,547 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:33,551 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:33,565 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’, 2023-09-20T03:58:33,566 inlined from ‘void OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefield.cpp:613:27: 2023-09-20T03:58:33,567 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:33,568 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:33,575 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:33,576 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’, 2023-09-20T03:58:33,577 inlined from ‘void OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefield.cpp:647:27: 2023-09-20T03:58:33,578 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:33,579 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:33,585 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:33,586 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T03:58:33,587 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:58:33,588 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:58:33,589 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:58:33,590 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-20T03:58:33,591 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:58:33,592 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T03:58:33,593 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:58:33,594 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:58:33,605 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:58:33,615 inlined from ‘bool OpenBabel::OBForceField::RandomRotorSearchNextConformer(unsigned int)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefield.cpp:1535:24: 2023-09-20T03:58:33,616 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:33,617 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:58:33,618 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:58:33,619 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:58:33,620 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:58:33,621 inlined from ‘bool OpenBabel::OBForceField::SystematicRotorSearchNextConformer(unsigned int)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefield.cpp:1269:24: 2023-09-20T03:58:33,622 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:33,623 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:58:33,624 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:58:33,625 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:58:33,626 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:58:33,627 inlined from ‘void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefield.cpp:1655:26: 2023-09-20T03:58:33,628 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:33,629 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:58:33,630 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:58:33,632 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:58:33,633 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:58:33,636 inlined from ‘void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefield.cpp:1660:24: 2023-09-20T03:58:33,637 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:33,638 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:58:33,639 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:58:33,640 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:58:33,641 inlined from ‘void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefield.cpp:1709:27: 2023-09-20T03:58:33,642 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:33,643 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:33,655 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:33,656 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:58:33,657 inlined from ‘void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefield.cpp:1728:28: 2023-09-20T03:58:33,658 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:33,659 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:33,660 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:33,661 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:58:33,663 inlined from ‘void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefield.cpp:1785:26: 2023-09-20T03:58:33,663 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:33,664 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:58:33,666 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:58:33,667 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T03:58:33,667 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:58:33,668 inlined from ‘bool OpenBabel::OBForceField::GetCoordinates(OpenBabel::OBMol&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefield.cpp:1044:23: 2023-09-20T03:58:33,669 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:58:33,670 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:58:33,671 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:58:34,281 [31/533] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o 2023-09-20T03:58:37,842 [32/533] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o 2023-09-20T03:58:37,843 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T03:58:37,845 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/op.cpp:20: 2023-09-20T03:58:37,846 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T03:58:37,847 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T03:58:37,849 | ^~~~~~~~~~~~~~~ 2023-09-20T03:58:37,850 In file included from /usr/include/c++/12/string:48, 2023-09-20T03:58:37,851 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:23: 2023-09-20T03:58:37,852 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T03:58:37,853 131 | struct binary_function 2023-09-20T03:58:37,854 | ^~~~~~~~~~~~~~~ 2023-09-20T03:58:43,731 [33/533] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o 2023-09-20T03:58:46,779 [34/533] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o 2023-09-20T03:58:47,504 [35/533] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o 2023-09-20T03:58:47,505 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T03:58:47,506 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T03:58:47,507 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/obconversion.cpp:48: 2023-09-20T03:58:47,508 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T03:58:47,509 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T03:58:47,510 | ^~~~~~~~~~~~~~~ 2023-09-20T03:58:47,512 In file included from /usr/include/c++/12/string:48, 2023-09-20T03:58:47,513 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T03:58:47,514 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T03:58:47,515 from /usr/include/c++/12/ios:42, 2023-09-20T03:58:47,516 from /usr/include/c++/12/istream:38, 2023-09-20T03:58:47,517 from /usr/include/c++/12/fstream:38, 2023-09-20T03:58:47,518 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/obconversion.cpp:37: 2023-09-20T03:58:47,519 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T03:58:47,520 131 | struct binary_function 2023-09-20T03:58:47,521 | ^~~~~~~~~~~~~~~ 2023-09-20T03:58:55,110 [36/533] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o 2023-09-20T03:58:57,340 [37/533] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o 2023-09-20T03:58:57,341 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/plugin.cpp:20: 2023-09-20T03:58:57,342 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T03:58:57,343 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T03:58:57,344 | ^~~~~~~~~~~~~~~ 2023-09-20T03:58:57,346 In file included from /usr/include/c++/12/string:48, 2023-09-20T03:58:57,347 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/dlhandler.h:24, 2023-09-20T03:58:57,348 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:23: 2023-09-20T03:58:57,348 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T03:58:57,349 131 | struct binary_function 2023-09-20T03:58:57,350 | ^~~~~~~~~~~~~~~ 2023-09-20T03:58:59,835 [38/533] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o 2023-09-20T03:59:00,486 [39/533] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o 2023-09-20T03:59:00,487 In file included from /usr/include/c++/12/vector:70, 2023-09-20T03:59:00,488 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/mol.h:44, 2023-09-20T03:59:00,489 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/phmodel.cpp:21: 2023-09-20T03:59:00,490 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T03:59:00,491 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:59:00,492 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:59:00,492 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:00,493 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:00,494 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:00,495 inlined from ‘virtual void OpenBabel::OBPhModel::ParseLine(const char*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/phmodel.cpp:94:24: 2023-09-20T03:59:00,496 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:00,497 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:00,498 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:00,499 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:00,500 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:00,501 inlined from ‘virtual void OpenBabel::OBPhModel::ParseLine(const char*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/phmodel.cpp:117:23: 2023-09-20T03:59:00,501 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:00,502 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:00,503 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:01,940 [40/533] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o 2023-09-20T03:59:03,533 [41/533] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o 2023-09-20T03:59:03,534 In file included from /usr/include/c++/12/vector:70, 2023-09-20T03:59:03,535 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/mol.h:44, 2023-09-20T03:59:03,536 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/mol.cpp:22: 2023-09-20T03:59:03,537 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: 2023-09-20T03:59:03,538 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-20T03:59:03,539 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:59:03,540 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:03,541 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBMol&}; _Tp = OpenBabel::OBMol; _Alloc = std::allocator]’: 2023-09-20T03:59:03,542 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:59:03,543 In file included from /usr/include/c++/12/vector:64: 2023-09-20T03:59:03,544 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator]’, 2023-09-20T03:59:03,545 inlined from ‘std::vector OpenBabel::OBMol::Separate(int)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/mol.cpp:4001:23: 2023-09-20T03:59:03,547 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:03,548 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:59:03,549 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:59:03,550 In file included from /usr/include/c++/12/algorithm:61, 2023-09-20T03:59:03,552 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/ring.h:24, 2023-09-20T03:59:03,553 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/mol.cpp:24: 2023-09-20T03:59:03,554 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-20T03:59:03,555 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,557 1802 | __insertion_sort(_RandomAccessIterator __first, 2023-09-20T03:59:03,566 | ^~~~~~~~~~~~~~~~ 2023-09-20T03:59:03,567 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,568 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-20T03:59:03,569 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,571 82 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, 2023-09-20T03:59:03,572 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:03,574 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,575 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,576 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,577 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2023-09-20T03:59:03,578 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-20T03:59:03,579 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,580 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2023-09-20T03:59:03,582 | ^~~~~~~~~~~~~ 2023-09-20T03:59:03,583 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-20T03:59:03,584 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,585 1908 | __introsort_loop(_RandomAccessIterator __first, 2023-09-20T03:59:03,587 | ^~~~~~~~~~~~~~~~ 2023-09-20T03:59:03,588 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,589 In function ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-20T03:59:03,590 inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1921:38: 2023-09-20T03:59:03,592 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,593 1887 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2023-09-20T03:59:03,594 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:03,595 1888 | __comp); 2023-09-20T03:59:03,597 | ~~~~~~~ 2023-09-20T03:59:03,598 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,599 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-20T03:59:03,600 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,601 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2023-09-20T03:59:03,602 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:03,616 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-20T03:59:03,619 inlined from ‘void OpenBabel::OBMol::ConnectTheDots()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/mol.cpp:3002:31: 2023-09-20T03:59:03,622 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,626 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:59:03,630 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:59:03,631 In function ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-20T03:59:03,633 inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1921:38, 2023-09-20T03:59:03,634 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1937:25, 2023-09-20T03:59:03,641 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(const pair&, const pair&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T03:59:03,643 inlined from ‘void OpenBabel::OBMol::ConnectTheDots()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/mol.cpp:3004:9: 2023-09-20T03:59:03,644 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,645 1887 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2023-09-20T03:59:03,646 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:03,647 1888 | __comp); 2023-09-20T03:59:03,648 | ~~~~~~~ 2023-09-20T03:59:03,649 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,650 In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-20T03:59:03,655 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1937:25, 2023-09-20T03:59:03,665 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(const pair&, const pair&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T03:59:03,666 inlined from ‘void OpenBabel::OBMol::ConnectTheDots()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/mol.cpp:3004:9: 2023-09-20T03:59:03,668 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,669 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2023-09-20T03:59:03,670 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:03,671 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-20T03:59:03,672 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2023-09-20T03:59:03,673 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(const pair&, const pair&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T03:59:03,675 inlined from ‘void OpenBabel::OBMol::ConnectTheDots()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/mol.cpp:3004:9: 2023-09-20T03:59:03,676 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,677 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2023-09-20T03:59:03,678 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:03,679 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,680 1854 | std::__insertion_sort(__first, __last, __comp); 2023-09-20T03:59:03,682 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:03,683 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-20T03:59:03,684 inlined from ‘void OpenBabel::OBMol::PerceiveBondOrders()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/mol.cpp:3412:30: 2023-09-20T03:59:03,686 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,687 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:59:03,695 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:59:03,705 In function ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-20T03:59:03,707 inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1921:38, 2023-09-20T03:59:03,708 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1937:25, 2023-09-20T03:59:03,709 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(const pair&, const pair&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T03:59:03,711 inlined from ‘void OpenBabel::OBMol::PerceiveBondOrders()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/mol.cpp:3414:9: 2023-09-20T03:59:03,713 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,714 1887 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2023-09-20T03:59:03,716 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:03,736 1888 | __comp); 2023-09-20T03:59:03,745 | ~~~~~~~ 2023-09-20T03:59:03,747 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,748 In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-20T03:59:03,749 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1937:25, 2023-09-20T03:59:03,750 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(const pair&, const pair&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T03:59:03,752 inlined from ‘void OpenBabel::OBMol::PerceiveBondOrders()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/mol.cpp:3414:9: 2023-09-20T03:59:03,753 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,754 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2023-09-20T03:59:03,755 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:03,756 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-20T03:59:03,757 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2023-09-20T03:59:03,758 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(const pair&, const pair&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T03:59:03,760 inlined from ‘void OpenBabel::OBMol::PerceiveBondOrders()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/mol.cpp:3414:9: 2023-09-20T03:59:03,761 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,763 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2023-09-20T03:59:03,764 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:03,765 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:03,767 1854 | std::__insertion_sort(__first, __last, __comp); 2023-09-20T03:59:03,768 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:05,503 [42/533] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o 2023-09-20T03:59:05,504 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T03:59:05,505 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T03:59:05,507 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/query.cpp:29: 2023-09-20T03:59:05,508 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T03:59:05,510 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T03:59:05,511 | ^~~~~~~~~~~~~~~ 2023-09-20T03:59:05,513 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-20T03:59:05,515 from /usr/include/c++/12/vector:66, 2023-09-20T03:59:05,516 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/base.h:25, 2023-09-20T03:59:05,517 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/bond.h:31, 2023-09-20T03:59:05,519 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/query.h:27, 2023-09-20T03:59:05,520 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/query.cpp:25: 2023-09-20T03:59:05,522 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T03:59:05,523 131 | struct binary_function 2023-09-20T03:59:05,525 | ^~~~~~~~~~~~~~~ 2023-09-20T03:59:09,764 [43/533] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o 2023-09-20T03:59:10,150 [44/533] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o 2023-09-20T03:59:13,843 [45/533] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o 2023-09-20T03:59:16,864 [46/533] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o 2023-09-20T03:59:19,078 [47/533] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o 2023-09-20T03:59:19,080 In file included from /usr/include/c++/12/vector:70, 2023-09-20T03:59:19,081 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/mol.h:44, 2023-09-20T03:59:19,082 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/rotamer.cpp:21: 2023-09-20T03:59:19,083 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T03:59:19,084 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:59:19,085 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:59:19,086 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:19,087 In file included from /usr/include/c++/12/vector:64: 2023-09-20T03:59:19,088 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:19,089 inlined from ‘void OpenBabel::OBRotamerList::Setup(OpenBabel::OBMol&, OpenBabel::OBRotorList&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/rotamer.cpp:258:33: 2023-09-20T03:59:19,090 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:19,091 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:59:19,092 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:59:21,354 [48/533] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o 2023-09-20T03:59:27,035 [49/533] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o 2023-09-20T03:59:27,036 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T03:59:27,037 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T03:59:27,038 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/tautomer.cpp:26: 2023-09-20T03:59:27,040 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T03:59:27,041 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T03:59:27,042 | ^~~~~~~~~~~~~~~ 2023-09-20T03:59:27,043 In file included from /usr/include/c++/12/string:48, 2023-09-20T03:59:27,044 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/tautomer.h:24, 2023-09-20T03:59:27,045 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/tautomer.cpp:19: 2023-09-20T03:59:27,046 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T03:59:27,047 131 | struct binary_function 2023-09-20T03:59:27,047 | ^~~~~~~~~~~~~~~ 2023-09-20T03:59:27,914 [50/533] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o 2023-09-20T03:59:27,915 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T03:59:27,915 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T03:59:27,916 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/mcdlutil.cpp:27: 2023-09-20T03:59:27,917 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T03:59:27,918 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T03:59:27,919 | ^~~~~~~~~~~~~~~ 2023-09-20T03:59:27,920 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-20T03:59:27,921 from /usr/include/c++/12/vector:66, 2023-09-20T03:59:27,922 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/mol.h:44, 2023-09-20T03:59:27,923 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/mcdlutil.cpp:22: 2023-09-20T03:59:27,924 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T03:59:27,925 131 | struct binary_function 2023-09-20T03:59:27,925 | ^~~~~~~~~~~~~~~ 2023-09-20T03:59:28,221 [51/533] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o 2023-09-20T03:59:28,222 In file included from /usr/include/c++/12/vector:70, 2023-09-20T03:59:28,222 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/mol.h:44, 2023-09-20T03:59:28,223 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/rotor.cpp:22: 2023-09-20T03:59:28,224 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T03:59:28,226 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:59:28,227 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:59:28,227 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:28,228 In file included from /usr/include/c++/12/vector:64: 2023-09-20T03:59:28,229 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:28,230 inlined from ‘void OpenBabel::OBRotor::RemoveSymTorsionValues(int)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/rotor.cpp:756:25: 2023-09-20T03:59:28,231 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:28,232 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:59:28,233 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:59:28,234 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T03:59:28,235 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:59:28,236 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:59:28,237 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:28,238 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:28,239 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:28,240 inlined from ‘void OpenBabel::OBRotor::Precalc(std::vector&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/rotor.cpp:683:25: 2023-09-20T03:59:28,241 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:28,241 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:28,242 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:28,243 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:28,244 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:28,245 inlined from ‘void OpenBabel::OBRotor::Precalc(std::vector&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/rotor.cpp:684:25: 2023-09-20T03:59:28,246 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:28,246 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:28,247 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:28,248 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:28,255 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:28,256 inlined from ‘void OpenBabel::OBRotor::Precalc(std::vector&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/rotor.cpp:685:24: 2023-09-20T03:59:28,257 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:28,258 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:28,259 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:28,260 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:28,261 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:28,262 inlined from ‘void OpenBabel::OBRotor::Precalc(std::vector&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/rotor.cpp:691:26: 2023-09-20T03:59:28,263 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:28,264 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:28,265 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:28,266 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:28,267 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:28,268 inlined from ‘virtual void OpenBabel::OBRotorRules::ParseLine(const char*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/rotor.cpp:833:28: 2023-09-20T03:59:28,269 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:28,270 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:28,271 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:28,272 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:28,273 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:28,274 inlined from ‘virtual void OpenBabel::OBRotorRules::ParseLine(const char*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/rotor.cpp:842:28: 2023-09-20T03:59:28,275 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:28,276 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:28,277 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:28,278 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:28,278 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:28,280 inlined from ‘virtual void OpenBabel::OBRotorRules::ParseLine(const char*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/rotor.cpp:851:28: 2023-09-20T03:59:28,281 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:28,281 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:28,282 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:28,283 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:28,284 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:28,287 inlined from ‘virtual void OpenBabel::OBRotorRules::ParseLine(const char*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/rotor.cpp:873:29: 2023-09-20T03:59:28,288 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:28,289 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:28,290 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:28,291 [52/533] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o 2023-09-20T03:59:28,292 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/descriptor.h:27, 2023-09-20T03:59:28,296 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/transform.cpp:23: 2023-09-20T03:59:28,297 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T03:59:28,298 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T03:59:28,299 | ^~~~~~~~~~~~~~~ 2023-09-20T03:59:28,300 In file included from /usr/include/c++/12/string:48, 2023-09-20T03:59:28,300 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T03:59:28,304 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T03:59:28,305 from /usr/include/c++/12/ios:42, 2023-09-20T03:59:28,305 from /usr/include/c++/12/istream:38, 2023-09-20T03:59:28,306 from /usr/include/c++/12/sstream:38, 2023-09-20T03:59:28,315 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/transform.cpp:19: 2023-09-20T03:59:28,316 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T03:59:28,317 131 | struct binary_function 2023-09-20T03:59:28,318 | ^~~~~~~~~~~~~~~ 2023-09-20T03:59:34,504 [53/533] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o 2023-09-20T03:59:34,519 [54/533] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o 2023-09-20T03:59:40,810 [55/533] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o 2023-09-20T03:59:42,109 [56/533] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o 2023-09-20T03:59:42,110 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T03:59:42,111 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T03:59:42,111 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obmolecformat.h:36, 2023-09-20T03:59:42,112 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/obmolecformat.cpp:19: 2023-09-20T03:59:42,113 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T03:59:42,115 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T03:59:42,116 | ^~~~~~~~~~~~~~~ 2023-09-20T03:59:42,117 In file included from /usr/include/c++/12/string:48, 2023-09-20T03:59:42,118 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T03:59:42,119 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T03:59:42,120 from /usr/include/c++/12/ios:42, 2023-09-20T03:59:42,121 from /usr/include/c++/12/ostream:38, 2023-09-20T03:59:42,123 from /usr/include/c++/12/iostream:39, 2023-09-20T03:59:42,124 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:24: 2023-09-20T03:59:42,125 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T03:59:42,126 131 | struct binary_function 2023-09-20T03:59:42,127 | ^~~~~~~~~~~~~~~ 2023-09-20T03:59:42,128 In file included from /usr/include/c++/12/vector:70, 2023-09-20T03:59:42,129 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:30: 2023-09-20T03:59:42,130 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBMol&}; _Tp = OpenBabel::OBMol; _Alloc = std::allocator]’: 2023-09-20T03:59:42,131 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:59:42,132 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:59:42,134 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:42,135 In file included from /usr/include/c++/12/vector:64: 2023-09-20T03:59:42,136 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator]’, 2023-09-20T03:59:42,137 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22, 2023-09-20T03:59:42,138 inlined from ‘static _OI std::__copy_move::__copy_m(_II, _II, _OI) [with _II = OpenBabel::OBMol*; _OI = std::back_insert_iterator >]’ at /usr/include/c++/12/bits/stl_algobase.h:385:18, 2023-09-20T03:59:42,139 inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = OpenBabel::OBMol*; _OI = back_insert_iterator >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30, 2023-09-20T03:59:42,140 inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = OpenBabel::OBMol*; _OI = back_insert_iterator >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42, 2023-09-20T03:59:42,141 inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = back_insert_iterator >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31, 2023-09-20T03:59:42,155 inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = back_insert_iterator >]’ at /usr/include/c++/12/bits/stl_algobase.h:620:7, 2023-09-20T03:59:42,156 inlined from ‘static bool OpenBabel::OBMoleculeFormat::ReadChemObjectImpl(OpenBabel::OBConversion*, OpenBabel::OBFormat*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/obmolecformat.cpp:74:16: 2023-09-20T03:59:42,157 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:42,158 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:59:42,160 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:59:50,014 [57/533] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.cpp.o 2023-09-20T03:59:50,017 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/forcefield.h:28, 2023-09-20T03:59:50,019 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp:24: 2023-09-20T03:59:50,021 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T03:59:50,023 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T03:59:50,025 | ^~~~~~~~~~~~~~~ 2023-09-20T03:59:50,027 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-20T03:59:50,029 from /usr/include/c++/12/vector:66, 2023-09-20T03:59:50,031 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/atom.h:30, 2023-09-20T03:59:50,034 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp:22: 2023-09-20T03:59:50,036 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T03:59:50,038 131 | struct binary_function 2023-09-20T03:59:50,043 | ^~~~~~~~~~~~~~~ 2023-09-20T03:59:50,046 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp: In constructor ‘OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)’: 2023-09-20T03:59:50,047 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp:134:66: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-20T03:59:50,048 134 | vec.erase(std::remove_if(vec.begin(), vec.end(), std::bind2nd(std::less(), (cutoff + 0.1) )), vec.end()); 2023-09-20T03:59:50,049 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,049 In file included from /usr/include/c++/12/bits/stl_function.h:1438: 2023-09-20T03:59:50,050 /usr/include/c++/12/backward/binders.h:172:5: note: declared here 2023-09-20T03:59:50,051 172 | bind2nd(const _Operation& __fn, const _Tp& __x) 2023-09-20T03:59:50,052 | ^~~~~~~ 2023-09-20T03:59:50,053 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp: In member function ‘int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)’: 2023-09-20T03:59:50,054 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp:444:77: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-20T03:59:50,055 444 | transform(_energies.begin(), _energies.end(), _energies.begin(), bind2nd(std::plus(), energy_offset)); 2023-09-20T03:59:50,056 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,057 /usr/include/c++/12/backward/binders.h:172:5: note: declared here 2023-09-20T03:59:50,059 172 | bind2nd(const _Operation& __fn, const _Tp& __x) 2023-09-20T03:59:50,065 | ^~~~~~~ 2023-09-20T03:59:50,076 In file included from /usr/include/c++/12/vector:60: 2023-09-20T03:59:50,077 /usr/include/c++/12/bits/stl_algobase.h: In function ‘_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred > >]’: 2023-09-20T03:59:50,085 /usr/include/c++/12/bits/stl_algobase.h:2131:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:50,086 2131 | __remove_if(_ForwardIterator __first, _ForwardIterator __last, 2023-09-20T03:59:50,087 | ^~~~~~~~~~~ 2023-09-20T03:59:50,089 /usr/include/c++/12/bits/stl_algobase.h:2131:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:50,090 In file included from /usr/include/c++/12/vector:70: 2023-09-20T03:59:50,091 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T03:59:50,092 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:59:50,093 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:59:50,094 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,095 In file included from /usr/include/c++/12/algorithm:61, 2023-09-20T03:59:50,096 from /usr/include/eigen3/Eigen/Core:95, 2023-09-20T03:59:50,097 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/math/align.h:26, 2023-09-20T03:59:50,098 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp:27: 2023-09-20T03:59:50,099 In function ‘_FIter std::remove_if(_FIter, _FIter, _Predicate) [with _FIter = __gnu_cxx::__normal_iterator >; _Predicate = binder2nd >]’, 2023-09-20T03:59:50,100 inlined from ‘OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp:134:29: 2023-09-20T03:59:50,101 /usr/include/c++/12/bits/stl_algo.h:877:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:50,102 877 | return std::__remove_if(__first, __last, 2023-09-20T03:59:50,103 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,104 878 | __gnu_cxx::__ops::__pred_iter(__pred)); 2023-09-20T03:59:50,105 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,106 In file included from /usr/include/c++/12/vector:64: 2023-09-20T03:59:50,107 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:50,108 inlined from ‘OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp:135:18: 2023-09-20T03:59:50,109 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:50,109 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:59:50,110 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:59:50,112 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-20T03:59:50,113 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:59:50,114 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:59:50,115 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,116 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T03:59:50,117 inlined from ‘std::vector OpenBabel::GetHeavyAtomCoords(const OBMol*, const std::vector&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp:284:27: 2023-09-20T03:59:50,118 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:50,119 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:59:50,120 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:59:50,121 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T03:59:50,122 inlined from ‘std::vector OpenBabel::OBDiversePoses::GetHeavyAtomCoords(const std::vector&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp:269:29: 2023-09-20T03:59:50,123 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:50,124 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:59:50,126 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:59:50,127 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::pair >, double>&}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’: 2023-09-20T03:59:50,128 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, double> >::iterator’ changed in GCC 7.1 2023-09-20T03:59:50,129 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:59:50,130 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,131 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-20T03:59:50,131 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:59:50,132 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair >, double>}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’: 2023-09-20T03:59:50,145 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, double> >::iterator’ changed in GCC 7.1 2023-09-20T03:59:50,146 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:50,147 inlined from ‘bool OpenBabel::OBDiversePoses::AddPose(std::vector, double)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp:209:36: 2023-09-20T03:59:50,148 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:50,149 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:59:50,151 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:59:50,152 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >, double>}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’, 2023-09-20T03:59:50,153 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:50,154 inlined from ‘bool OpenBabel::OBDiversePoses::AddPose(std::vector, double)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp:224:30: 2023-09-20T03:59:50,155 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-20T03:59:50,156 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:50,157 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,158 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T03:59:50,159 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:50,159 inlined from ‘bool OpenBabel::OBDiversePoses::AddPose(double*, double)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp:151:24: 2023-09-20T03:59:50,160 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:50,161 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:50,162 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,163 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T03:59:50,164 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:59:50,165 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:59:50,165 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,166 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter, double>&, const pair, double>&)>]’: 2023-09-20T03:59:50,167 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-20T03:59:50,169 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2023-09-20T03:59:50,170 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,171 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’: 2023-09-20T03:59:50,172 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-20T03:59:50,173 1802 | __insertion_sort(_RandomAccessIterator __first, 2023-09-20T03:59:50,174 | ^~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,175 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-20T03:59:50,176 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2023-09-20T03:59:50,177 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Distance = int; _Tp = pair, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’: 2023-09-20T03:59:50,178 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-20T03:59:50,179 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2023-09-20T03:59:50,180 | ^~~~~~~~~~~~~ 2023-09-20T03:59:50,181 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’: 2023-09-20T03:59:50,182 /usr/include/c++/12/bits/stl_heap.h:340:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-20T03:59:50,183 340 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, 2023-09-20T03:59:50,184 | ^~~~~~~~~~~ 2023-09-20T03:59:50,185 /usr/include/c++/12/bits/stl_heap.h:340:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-20T03:59:50,186 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’: 2023-09-20T03:59:50,187 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-20T03:59:50,188 1908 | __introsort_loop(_RandomAccessIterator __first, 2023-09-20T03:59:50,188 | ^~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,189 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-20T03:59:50,205 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-20T03:59:50,206 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2023-09-20T03:59:50,207 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,208 In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’, 2023-09-20T03:59:50,210 inlined from ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1900:25, 2023-09-20T03:59:50,211 inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1916:27: 2023-09-20T03:59:50,212 /usr/include/c++/12/bits/stl_algo.h:1629:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-20T03:59:50,213 1629 | std::__make_heap(__first, __middle, __comp); 2023-09-20T03:59:50,214 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,215 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’, 2023-09-20T03:59:50,216 inlined from ‘void OpenBabel::UpdateConformersFromTree(OBMol*, std::vector&, OBDiversePoses*, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp:298:22: 2023-09-20T03:59:50,217 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-20T03:59:50,218 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:59:50,219 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:59:50,220 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’, 2023-09-20T03:59:50,220 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = bool (*)(const pair, double>&, const pair, double>&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T03:59:50,222 inlined from ‘void OpenBabel::UpdateConformersFromTree(OBMol*, std::vector&, OBDiversePoses*, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp:301:7: 2023-09-20T03:59:50,223 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-20T03:59:50,223 1937 | std::__introsort_loop(__first, __last, 2023-09-20T03:59:50,225 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,225 1938 | std::__lg(__last - __first) * 2, 2023-09-20T03:59:50,226 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,227 1939 | __comp); 2023-09-20T03:59:50,228 | ~~~~~~~ 2023-09-20T03:59:50,229 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’, 2023-09-20T03:59:50,230 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double>&, const pair, double>&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2023-09-20T03:59:50,231 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator, double>*, vector, double> > >; _Compare = bool (*)(const pair, double>&, const pair, double>&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T03:59:50,231 inlined from ‘void OpenBabel::UpdateConformersFromTree(OBMol*, std::vector&, OBDiversePoses*, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp:301:7: 2023-09-20T03:59:50,232 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-20T03:59:50,233 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2023-09-20T03:59:50,234 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,236 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-20T03:59:50,237 1854 | std::__insertion_sort(__first, __last, __comp); 2023-09-20T03:59:50,238 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,238 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’, 2023-09-20T03:59:50,239 inlined from ‘void OpenBabel::UpdateConformersFromTree(OBMol*, std::vector&, OBDiversePoses*, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp:313:25: 2023-09-20T03:59:50,240 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 2023-09-20T03:59:50,241 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:59:50,242 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:59:50,243 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:50,244 inlined from ‘void OpenBabel::UpdateConformersFromTree(OBMol*, std::vector&, OBDiversePoses*, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp:321:23: 2023-09-20T03:59:50,245 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:50,247 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:59:50,248 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:59:50,249 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:50,250 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:50,251 inlined from ‘int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp:350:26: 2023-09-20T03:59:50,251 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:50,252 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:50,253 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:50,254 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:50,255 inlined from ‘int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/confsearch.cpp:375:24: 2023-09-20T03:59:50,256 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:50,265 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:59:50,266 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:59:54,820 [58/533] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.cpp.o 2023-09-20T03:59:54,821 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/forcefield.h:28, 2023-09-20T03:59:54,822 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:22: 2023-09-20T03:59:54,823 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T03:59:54,824 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T03:59:54,824 | ^~~~~~~~~~~~~~~ 2023-09-20T03:59:54,826 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-20T03:59:54,827 from /usr/include/c++/12/vector:66, 2023-09-20T03:59:54,828 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/mol.h:44, 2023-09-20T03:59:54,829 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/conformersearch.h:24, 2023-09-20T03:59:54,830 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:20: 2023-09-20T03:59:54,831 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T03:59:54,832 131 | struct binary_function 2023-09-20T03:59:54,833 | ^~~~~~~~~~~~~~~ 2023-09-20T03:59:54,834 In file included from /usr/include/c++/12/algorithm:61, 2023-09-20T03:59:54,835 from /usr/include/eigen3/Eigen/Core:95, 2023-09-20T03:59:54,836 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/math/align.h:26, 2023-09-20T03:59:54,836 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:21: 2023-09-20T03:59:54,837 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: 2023-09-20T03:59:54,838 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,839 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2023-09-20T03:59:54,840 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,841 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2023-09-20T03:59:54,841 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,842 1802 | __insertion_sort(_RandomAccessIterator __first, 2023-09-20T03:59:54,843 | ^~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,844 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,845 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: 2023-09-20T03:59:54,846 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,847 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2023-09-20T03:59:54,848 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,849 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2023-09-20T03:59:54,850 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,850 1802 | __insertion_sort(_RandomAccessIterator __first, 2023-09-20T03:59:54,851 | ^~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,853 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,854 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2023-09-20T03:59:54,855 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = OpenBabel::ConformerScore; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2023-09-20T03:59:54,856 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,857 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2023-09-20T03:59:54,858 | ^~~~~~~~~~~~~ 2023-09-20T03:59:54,860 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = OpenBabel::ConformerScore; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2023-09-20T03:59:54,861 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,861 In file included from /usr/include/c++/12/vector:70: 2023-09-20T03:59:54,862 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T03:59:54,863 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:59:54,864 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:59:54,865 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,866 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-20T03:59:54,867 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:59:54,868 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T03:59:54,869 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:54,870 inlined from ‘virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const OpenBabel::RotorKeys&, const std::vector&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:259:19: 2023-09-20T03:59:54,871 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,872 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:54,873 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,873 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T03:59:54,874 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:54,876 inlined from ‘virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const OpenBabel::RotorKeys&, const std::vector&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:272:21: 2023-09-20T03:59:54,877 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,877 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:54,878 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,879 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T03:59:54,880 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:54,881 inlined from ‘virtual double OpenBabel::OBRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const OpenBabel::RotorKeys&, const std::vector&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:115:19: 2023-09-20T03:59:54,882 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,883 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:54,884 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,885 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T03:59:54,885 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:54,886 inlined from ‘virtual double OpenBabel::OBRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const OpenBabel::RotorKeys&, const std::vector&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:128:21: 2023-09-20T03:59:54,887 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,888 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:54,889 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,890 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::ConformerScore}; _Tp = OpenBabel::ConformerScore; _Alloc = std::allocator]’: 2023-09-20T03:59:54,891 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:59:54,892 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:59:54,892 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,893 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2023-09-20T03:59:54,894 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,895 1908 | __introsort_loop(_RandomAccessIterator __first, 2023-09-20T03:59:54,896 | ^~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,897 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,898 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,899 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2023-09-20T03:59:54,899 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,900 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2023-09-20T03:59:54,901 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,902 1908 | __introsort_loop(_RandomAccessIterator __first, 2023-09-20T03:59:54,903 | ^~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,903 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,904 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,906 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2023-09-20T03:59:54,907 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,908 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::ConformerScore}; _Tp = OpenBabel::ConformerScore; _Alloc = std::allocator]’, 2023-09-20T03:59:54,909 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::ConformerScore; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:54,910 inlined from ‘double OpenBabel::OBConformerSearch::MakeSelection()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:531:33: 2023-09-20T03:59:54,911 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,912 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:54,913 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,914 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, 2023-09-20T03:59:54,915 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = OpenBabel::CompareConformerHighScore]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T03:59:54,916 inlined from ‘double OpenBabel::OBConformerSearch::MakeSelection()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:540:16: 2023-09-20T03:59:54,918 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,919 1937 | std::__introsort_loop(__first, __last, 2023-09-20T03:59:54,919 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,920 1938 | std::__lg(__last - __first) * 2, 2023-09-20T03:59:54,921 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,922 1939 | __comp); 2023-09-20T03:59:54,923 | ~~~~~~~ 2023-09-20T03:59:54,924 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, 2023-09-20T03:59:54,924 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2023-09-20T03:59:54,925 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = OpenBabel::CompareConformerHighScore]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T03:59:54,926 inlined from ‘double OpenBabel::OBConformerSearch::MakeSelection()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:540:16: 2023-09-20T03:59:54,927 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,928 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2023-09-20T03:59:54,929 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,930 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,931 1854 | std::__insertion_sort(__first, __last, __comp); 2023-09-20T03:59:54,932 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,933 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, 2023-09-20T03:59:54,935 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = OpenBabel::CompareConformerLowScore]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T03:59:54,936 inlined from ‘double OpenBabel::OBConformerSearch::MakeSelection()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:542:16: 2023-09-20T03:59:54,937 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,938 1937 | std::__introsort_loop(__first, __last, 2023-09-20T03:59:54,939 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,940 1938 | std::__lg(__last - __first) * 2, 2023-09-20T03:59:54,941 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,941 1939 | __comp); 2023-09-20T03:59:54,942 | ~~~~~~~ 2023-09-20T03:59:54,943 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, 2023-09-20T03:59:54,944 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2023-09-20T03:59:54,945 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = OpenBabel::CompareConformerLowScore]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T03:59:54,945 inlined from ‘double OpenBabel::OBConformerSearch::MakeSelection()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:542:16: 2023-09-20T03:59:54,947 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,948 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2023-09-20T03:59:54,949 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,950 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,951 1854 | std::__insertion_sort(__first, __last, __comp); 2023-09-20T03:59:54,952 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,953 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::ConformerScore}; _Tp = OpenBabel::ConformerScore; _Alloc = std::allocator]’, 2023-09-20T03:59:54,954 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::ConformerScore; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:54,955 inlined from ‘int OpenBabel::OBConformerSearch::score_population()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:942:35: 2023-09-20T03:59:54,956 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,957 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:54,958 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,959 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, 2023-09-20T03:59:54,961 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = OpenBabel::CompareConformerHighScore]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T03:59:54,961 inlined from ‘int OpenBabel::OBConformerSearch::score_population()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:951:16: 2023-09-20T03:59:54,962 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,963 1937 | std::__introsort_loop(__first, __last, 2023-09-20T03:59:54,964 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,965 1938 | std::__lg(__last - __first) * 2, 2023-09-20T03:59:54,966 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,967 1939 | __comp); 2023-09-20T03:59:54,968 | ~~~~~~~ 2023-09-20T03:59:54,969 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, 2023-09-20T03:59:54,970 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2023-09-20T03:59:54,972 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = OpenBabel::CompareConformerHighScore]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T03:59:54,973 inlined from ‘int OpenBabel::OBConformerSearch::score_population()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:951:16: 2023-09-20T03:59:54,974 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,975 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2023-09-20T03:59:54,976 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,977 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,978 1854 | std::__insertion_sort(__first, __last, __comp); 2023-09-20T03:59:54,979 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,980 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, 2023-09-20T03:59:54,981 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = OpenBabel::CompareConformerLowScore]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T03:59:54,983 inlined from ‘int OpenBabel::OBConformerSearch::score_population()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:953:16: 2023-09-20T03:59:54,984 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:54,986 1937 | std::__introsort_loop(__first, __last, 2023-09-20T03:59:54,987 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,988 1938 | std::__lg(__last - __first) * 2, 2023-09-20T03:59:54,990 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:54,991 1939 | __comp); 2023-09-20T03:59:54,993 | ~~~~~~~ 2023-09-20T03:59:54,994 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, 2023-09-20T03:59:54,995 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2023-09-20T03:59:54,996 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = OpenBabel::CompareConformerLowScore]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T03:59:54,997 inlined from ‘int OpenBabel::OBConformerSearch::score_population()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:953:16: 2023-09-20T03:59:54,998 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:55,000 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2023-09-20T03:59:55,001 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:55,003 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:55,004 1854 | std::__insertion_sort(__first, __last, __comp); 2023-09-20T03:59:55,005 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:55,006 In file included from /usr/include/c++/12/vector:64: 2023-09-20T03:59:55,008 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:55,009 inlined from ‘int OpenBabel::OBConformerSearch::score_population()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:961:27: 2023-09-20T03:59:55,011 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:55,012 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:59:55,013 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:59:55,015 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T03:59:55,016 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:59:55,016 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:59:55,017 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:55,018 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:55,019 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:55,019 inlined from ‘int OpenBabel::OBConformerSearch::share_fitness()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:994:34: 2023-09-20T03:59:55,020 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:55,021 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:55,022 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:55,022 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:55,023 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:55,024 inlined from ‘int OpenBabel::OBConformerSearch::share_fitness()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/conformersearch.cpp:997:34: 2023-09-20T03:59:55,025 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:55,026 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:55,027 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:55,028 In file included from /usr/include/c++/12/map:60, 2023-09-20T03:59:55,029 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/mol.h:46: 2023-09-20T03:59:55,030 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::vector; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2023-09-20T03:59:55,032 /usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2023-09-20T03:59:55,032 2209 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2023-09-20T03:59:55,033 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:56,671 [59/533] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o 2023-09-20T03:59:56,786 [60/533] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o 2023-09-20T03:59:56,787 In file included from /usr/include/c++/12/vector:70, 2023-09-20T03:59:56,788 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/mol.h:44, 2023-09-20T03:59:56,789 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/depict/depict.cpp:20: 2023-09-20T03:59:56,790 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: 2023-09-20T03:59:56,791 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-20T03:59:56,792 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:59:56,792 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:56,793 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: 2023-09-20T03:59:56,794 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-20T03:59:56,795 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-20T03:59:56,796 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:56,797 inlined from ‘virtual void OpenBabel::OBDepictPrivateBallAndStick::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/depict/depict.cpp:1127:21: 2023-09-20T03:59:56,798 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,799 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:56,800 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:56,801 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-20T03:59:56,803 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:56,804 inlined from ‘virtual void OpenBabel::OBDepictPrivateBallAndStick::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/depict/depict.cpp:1128:21: 2023-09-20T03:59:56,805 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,806 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:56,807 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:56,808 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-20T03:59:56,809 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:56,811 inlined from ‘virtual void OpenBabel::OBDepictPrivateBallAndStick::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/depict/depict.cpp:1130:21: 2023-09-20T03:59:56,811 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,812 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:56,813 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:56,814 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-20T03:59:56,821 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:56,823 inlined from ‘virtual void OpenBabel::OBDepictPrivate::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/depict/depict.cpp:750:21: 2023-09-20T03:59:56,823 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,825 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:56,826 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:56,827 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-20T03:59:56,830 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:56,831 inlined from ‘virtual void OpenBabel::OBDepictPrivate::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/depict/depict.cpp:751:21: 2023-09-20T03:59:56,832 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,833 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:56,834 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:56,835 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-20T03:59:56,836 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:56,837 inlined from ‘virtual void OpenBabel::OBDepictPrivate::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/depict/depict.cpp:753:21: 2023-09-20T03:59:56,838 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,839 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:56,839 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:56,841 In file included from /usr/include/c++/12/algorithm:61, 2023-09-20T03:59:56,842 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/ring.h:24, 2023-09-20T03:59:56,842 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/depict/depict.cpp:22: 2023-09-20T03:59:56,843 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-20T03:59:56,844 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,845 1802 | __insertion_sort(_RandomAccessIterator __first, 2023-09-20T03:59:56,849 | ^~~~~~~~~~~~~~~~ 2023-09-20T03:59:56,850 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,851 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-20T03:59:56,852 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,853 82 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, 2023-09-20T03:59:56,854 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:56,854 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,855 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,856 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,857 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2023-09-20T03:59:56,858 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-20T03:59:56,859 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,860 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2023-09-20T03:59:56,861 | ^~~~~~~~~~~~~ 2023-09-20T03:59:56,861 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-20T03:59:56,862 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,863 1908 | __introsort_loop(_RandomAccessIterator __first, 2023-09-20T03:59:56,864 | ^~~~~~~~~~~~~~~~ 2023-09-20T03:59:56,865 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,865 In function ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-20T03:59:56,866 inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1921:38: 2023-09-20T03:59:56,867 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,868 1887 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2023-09-20T03:59:56,869 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:56,870 1888 | __comp); 2023-09-20T03:59:56,871 | ~~~~~~~ 2023-09-20T03:59:56,872 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,873 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’: 2023-09-20T03:59:56,874 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,875 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2023-09-20T03:59:56,876 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:56,877 In file included from /usr/include/c++/12/vector:64: 2023-09-20T03:59:56,878 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-20T03:59:56,885 inlined from ‘bool OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/depict/depict.cpp:553:31: 2023-09-20T03:59:56,886 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,887 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:59:56,888 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:59:56,889 In function ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-20T03:59:56,890 inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1921:38, 2023-09-20T03:59:56,892 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1937:25, 2023-09-20T03:59:56,893 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(const pair&, const pair&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T03:59:56,894 inlined from ‘bool OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/depict/depict.cpp:555:9: 2023-09-20T03:59:56,895 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,896 1887 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2023-09-20T03:59:56,897 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:56,898 1888 | __comp); 2023-09-20T03:59:56,899 | ~~~~~~~ 2023-09-20T03:59:56,900 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,901 In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-20T03:59:56,902 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1937:25, 2023-09-20T03:59:56,903 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(const pair&, const pair&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T03:59:56,903 inlined from ‘bool OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/depict/depict.cpp:555:9: 2023-09-20T03:59:56,904 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,905 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2023-09-20T03:59:56,906 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:56,907 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’, 2023-09-20T03:59:56,908 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const pair&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2023-09-20T03:59:56,909 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(const pair&, const pair&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T03:59:56,910 inlined from ‘bool OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/depict/depict.cpp:555:9: 2023-09-20T03:59:56,911 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,912 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2023-09-20T03:59:56,913 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:56,914 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T03:59:56,915 1854 | std::__insertion_sort(__first, __last, __comp); 2023-09-20T03:59:56,917 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:58,791 [61/533] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o 2023-09-20T03:59:58,792 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T03:59:58,792 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T03:59:58,793 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obmolecformat.h:36, 2023-09-20T03:59:58,794 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/formats/gausscubeformat.cpp:29: 2023-09-20T03:59:58,795 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T03:59:58,796 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T03:59:58,797 | ^~~~~~~~~~~~~~~ 2023-09-20T03:59:58,798 In file included from /usr/include/c++/12/string:48, 2023-09-20T03:59:58,801 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T03:59:58,802 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T03:59:58,802 from /usr/include/c++/12/ios:42, 2023-09-20T03:59:58,803 from /usr/include/c++/12/istream:38, 2023-09-20T03:59:58,804 from /usr/include/c++/12/sstream:38, 2023-09-20T03:59:58,806 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/formats/gausscubeformat.cpp:25: 2023-09-20T03:59:58,807 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T03:59:58,808 131 | struct binary_function 2023-09-20T03:59:58,809 | ^~~~~~~~~~~~~~~ 2023-09-20T03:59:58,810 In file included from /usr/include/c++/12/vector:70, 2023-09-20T03:59:58,811 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:30: 2023-09-20T03:59:58,812 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T03:59:58,813 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:59:58,814 439 | vector<_Tp, _Alloc>:: 2023-09-20T03:59:58,815 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:58,816 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T03:59:58,817 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T03:59:58,818 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:58,819 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T03:59:58,820 inlined from ‘virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/formats/gausscubeformat.cpp:507:25: 2023-09-20T03:59:58,821 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:58,823 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T03:59:58,823 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T03:59:58,824 In file included from /usr/include/c++/12/vector:64: 2023-09-20T03:59:58,825 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T03:59:58,826 inlined from ‘virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/formats/gausscubeformat.cpp:518:25: 2023-09-20T03:59:58,827 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T03:59:58,827 1287 | _M_realloc_insert(end(), __x); 2023-09-20T03:59:58,828 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T03:59:59,200 [62/533] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o 2023-09-20T03:59:59,361 [63/533] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o 2023-09-20T04:00:01,360 [64/533] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o 2023-09-20T04:00:03,182 [65/533] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o 2023-09-20T04:00:04,235 [66/533] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o 2023-09-20T04:00:08,740 [67/533] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o 2023-09-20T04:00:11,483 [68/533] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o 2023-09-20T04:00:11,752 [69/533] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o 2023-09-20T04:00:17,001 [70/533] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o 2023-09-20T04:00:17,002 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T04:00:17,003 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T04:00:17,004 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/descriptors/cansmidescriptor.cpp:22: 2023-09-20T04:00:17,006 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:00:17,007 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:00:17,008 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:17,009 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:00:17,010 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:00:17,011 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:00:17,012 from /usr/include/c++/12/ios:42, 2023-09-20T04:00:17,013 from /usr/include/c++/12/istream:38, 2023-09-20T04:00:17,014 from /usr/include/c++/12/sstream:38, 2023-09-20T04:00:17,015 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/oberror.h:26, 2023-09-20T04:00:17,016 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/descriptors/cansmidescriptor.cpp:20: 2023-09-20T04:00:17,017 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:00:17,019 131 | struct binary_function 2023-09-20T04:00:17,020 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:18,231 [71/533] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o 2023-09-20T04:00:18,232 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T04:00:18,233 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T04:00:18,234 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/gen3dstereohelper.cpp:29: 2023-09-20T04:00:18,234 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:00:18,236 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:00:18,236 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:18,237 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:00:18,238 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/gen3dstereohelper.h:28, 2023-09-20T04:00:18,239 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/gen3dstereohelper.cpp:25: 2023-09-20T04:00:18,240 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:00:18,265 131 | struct binary_function 2023-09-20T04:00:18,266 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:18,651 [72/533] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o 2023-09-20T04:00:22,246 [73/533] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o 2023-09-20T04:00:22,247 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/descriptor.h:27, 2023-09-20T04:00:22,248 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/descriptors/cmpdfilter.cpp:21: 2023-09-20T04:00:22,249 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:00:22,251 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:00:22,252 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:22,253 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:00:22,254 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:00:22,255 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:00:22,256 from /usr/include/c++/12/ios:42, 2023-09-20T04:00:22,257 from /usr/include/c++/12/istream:38, 2023-09-20T04:00:22,258 from /usr/include/c++/12/sstream:38, 2023-09-20T04:00:22,259 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/oberror.h:26, 2023-09-20T04:00:22,262 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/descriptors/cmpdfilter.cpp:20: 2023-09-20T04:00:22,263 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:00:22,264 131 | struct binary_function 2023-09-20T04:00:22,265 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:28,093 [74/533] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o 2023-09-20T04:00:28,094 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/descriptor.h:27, 2023-09-20T04:00:28,096 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/descriptors/filters.cpp:20: 2023-09-20T04:00:28,097 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:00:28,098 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:00:28,099 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:28,101 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:00:28,102 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/descriptor.h:22: 2023-09-20T04:00:28,103 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:00:28,104 131 | struct binary_function 2023-09-20T04:00:28,105 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:28,294 [75/533] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o 2023-09-20T04:00:28,295 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/descriptor.h:27, 2023-09-20T04:00:28,296 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/groupcontrib.h:27, 2023-09-20T04:00:28,297 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/descriptors/groupcontrib.cpp:33: 2023-09-20T04:00:28,297 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:00:28,298 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:00:28,299 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:28,301 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-20T04:00:28,303 from /usr/include/c++/12/vector:66, 2023-09-20T04:00:28,304 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/descriptors/groupcontrib.cpp:25: 2023-09-20T04:00:28,305 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:00:28,307 131 | struct binary_function 2023-09-20T04:00:28,308 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:28,309 In file included from /usr/include/c++/12/vector:70: 2023-09-20T04:00:28,310 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: 2023-09-20T04:00:28,311 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-20T04:00:28,312 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:00:28,313 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:28,313 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-20T04:00:28,315 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:00:28,317 inlined from ‘bool OpenBabel::OBGroupContrib::ParseFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/descriptors/groupcontrib.cpp:88:35: 2023-09-20T04:00:28,318 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:00:28,319 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:00:28,320 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:28,321 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-20T04:00:28,325 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:00:28,326 inlined from ‘bool OpenBabel::OBGroupContrib::ParseFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/descriptors/groupcontrib.cpp:90:38: 2023-09-20T04:00:28,327 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:00:28,328 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:00:28,329 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:29,570 [76/533] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o 2023-09-20T04:00:29,571 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T04:00:29,572 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T04:00:29,573 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/descriptors/inchidescriptor.cpp:22: 2023-09-20T04:00:29,574 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:00:29,575 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:00:29,576 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:29,577 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:00:29,578 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:00:29,580 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:00:29,580 from /usr/include/c++/12/ios:42, 2023-09-20T04:00:29,582 from /usr/include/c++/12/istream:38, 2023-09-20T04:00:29,583 from /usr/include/c++/12/sstream:38, 2023-09-20T04:00:29,584 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/oberror.h:26, 2023-09-20T04:00:29,585 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/descriptors/inchidescriptor.cpp:20: 2023-09-20T04:00:29,587 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:00:29,588 131 | struct binary_function 2023-09-20T04:00:29,590 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:29,591 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/descriptors/inchidescriptor.cpp:24: 2023-09-20T04:00:29,592 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/inchiformat.h:134:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:00:29,593 134 | : public std::binary_function 2023-09-20T04:00:29,594 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:29,595 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:00:29,596 131 | struct binary_function 2023-09-20T04:00:29,597 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:34,752 [77/533] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o 2023-09-20T04:00:34,752 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/descriptor.h:27, 2023-09-20T04:00:34,753 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/descriptors/smartsdescriptors.cpp:22: 2023-09-20T04:00:34,754 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:00:34,755 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:00:34,756 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:34,757 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:00:34,758 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:00:34,759 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:00:34,760 from /usr/include/c++/12/ios:42, 2023-09-20T04:00:34,761 from /usr/include/c++/12/istream:38, 2023-09-20T04:00:34,762 from /usr/include/c++/12/sstream:38, 2023-09-20T04:00:34,763 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/oberror.h:26, 2023-09-20T04:00:34,764 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/descriptors/smartsdescriptors.cpp:20: 2023-09-20T04:00:34,765 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:00:34,766 131 | struct binary_function 2023-09-20T04:00:34,767 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:37,015 [78/533] Building CXX object src/CMakeFiles/openbabel.dir/math/align.cpp.o 2023-09-20T04:00:37,017 In file included from /usr/include/c++/12/vector:70, 2023-09-20T04:00:37,018 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/math/align.cpp:21: 2023-09-20T04:00:37,019 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-20T04:00:37,020 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:00:37,021 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:00:37,023 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:37,024 In file included from /usr/include/c++/12/vector:64: 2023-09-20T04:00:37,025 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:37,026 inlined from ‘void OpenBabel::OBAlign::SetTargetMol(const OpenBabel::OBMol&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/math/align.cpp:146:36: 2023-09-20T04:00:37,027 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:37,028 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:00:37,029 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:00:37,030 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:37,031 inlined from ‘void OpenBabel::OBAlign::SetRefMol(const OpenBabel::OBMol&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/math/align.cpp:125:33: 2023-09-20T04:00:37,032 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:37,033 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:00:37,034 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:00:37,035 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-20T04:00:37,035 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:00:37,036 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:00:37,037 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:37,038 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:37,039 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:00:37,040 inlined from ‘std::vector OpenBabel::OBAlign::GetAlignment()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/math/align.cpp:394:33: 2023-09-20T04:00:37,041 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:37,043 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:00:37,044 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:37,045 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:37,046 inlined from ‘std::vector OpenBabel::OBAlign::GetAlignment()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/math/align.cpp:400:32: 2023-09-20T04:00:37,047 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:37,048 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:00:37,049 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:00:37,050 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:37,051 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:00:37,052 inlined from ‘std::vector OpenBabel::OBAlign::GetAlignment()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/math/align.cpp:417:33: 2023-09-20T04:00:37,053 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:37,054 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:00:37,065 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:40,013 [79/533] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o 2023-09-20T04:00:40,014 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/fingerprint.h:28, 2023-09-20T04:00:40,015 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/fingerprints/finger3.cpp:27: 2023-09-20T04:00:40,016 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:00:40,018 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:00:40,019 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:40,020 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-20T04:00:40,021 from /usr/include/c++/12/vector:66, 2023-09-20T04:00:40,022 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/mol.h:44, 2023-09-20T04:00:40,023 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/fingerprints/finger3.cpp:19: 2023-09-20T04:00:40,024 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:00:40,025 131 | struct binary_function 2023-09-20T04:00:40,026 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:40,262 [80/533] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o 2023-09-20T04:00:40,263 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/fingerprint.h:28, 2023-09-20T04:00:40,264 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/fingerprints/finger2.cpp:24: 2023-09-20T04:00:40,265 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:00:40,266 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:00:40,267 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:40,268 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:00:40,285 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:00:40,286 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:00:40,287 from /usr/include/c++/12/ios:42, 2023-09-20T04:00:40,288 from /usr/include/c++/12/istream:38, 2023-09-20T04:00:40,289 from /usr/include/c++/12/sstream:38, 2023-09-20T04:00:40,290 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/oberror.h:26, 2023-09-20T04:00:40,291 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/fingerprints/finger2.cpp:20: 2023-09-20T04:00:40,292 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:00:40,293 131 | struct binary_function 2023-09-20T04:00:40,294 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:43,545 [81/533] Building CXX object src/CMakeFiles/openbabel.dir/distgeom.cpp.o 2023-09-20T04:00:43,545 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T04:00:43,546 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T04:00:43,547 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/distgeom.cpp:38: 2023-09-20T04:00:43,548 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:00:43,549 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:00:43,550 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:43,551 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-20T04:00:43,552 from /usr/include/c++/12/vector:66, 2023-09-20T04:00:43,553 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/mol.h:44, 2023-09-20T04:00:43,555 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/distgeom.h:24, 2023-09-20T04:00:43,556 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/distgeom.cpp:22: 2023-09-20T04:00:43,557 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:00:43,558 131 | struct binary_function 2023-09-20T04:00:43,559 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:43,560 In file included from /usr/include/c++/12/vector:70: 2023-09-20T04:00:43,561 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::TetrahedralInfo&}; _Tp = OpenBabel::TetrahedralInfo; _Alloc = std::allocator]’: 2023-09-20T04:00:43,562 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:00:43,564 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:00:43,565 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:43,566 In file included from /usr/include/c++/12/vector:64: 2023-09-20T04:00:43,567 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::TetrahedralInfo; _Alloc = std::allocator]’, 2023-09-20T04:00:43,568 inlined from ‘bool OpenBabel::OBDistanceGeometry::Setup(const OpenBabel::OBMol&, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/distgeom.cpp:203:28: 2023-09-20T04:00:43,570 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:43,571 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:00:43,572 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:00:43,574 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::TetrahedralInfo; _Alloc = std::allocator]’, 2023-09-20T04:00:43,575 inlined from ‘bool OpenBabel::OBDistanceGeometry::Setup(const OpenBabel::OBMol&, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/distgeom.cpp:206:28: 2023-09-20T04:00:43,576 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:43,585 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:00:43,587 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:00:43,588 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::TetrahedralInfo; _Alloc = std::allocator]’, 2023-09-20T04:00:43,589 inlined from ‘bool OpenBabel::OBDistanceGeometry::Setup(const OpenBabel::OBMol&, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/distgeom.cpp:228:30: 2023-09-20T04:00:43,590 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:43,591 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:00:43,592 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:00:45,858 [82/533] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o 2023-09-20T04:00:45,859 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/fingerprint.h:28, 2023-09-20T04:00:45,860 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/fingerprints/fingerecfp.cpp:20: 2023-09-20T04:00:45,861 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:00:45,862 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:00:45,864 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:45,865 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:00:45,866 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:00:45,867 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:00:45,868 from /usr/include/c++/12/ios:42, 2023-09-20T04:00:45,869 from /usr/include/c++/12/istream:38, 2023-09-20T04:00:45,870 from /usr/include/c++/12/sstream:38, 2023-09-20T04:00:45,872 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/oberror.h:26, 2023-09-20T04:00:45,873 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/fingerprints/fingerecfp.cpp:15: 2023-09-20T04:00:45,874 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:00:45,875 131 | struct binary_function 2023-09-20T04:00:45,876 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:48,902 [83/533] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o 2023-09-20T04:00:48,904 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp: In function ‘void OpenBabel::StereoRefToImplicit(OBMol&, OBStereo::Ref)’: 2023-09-20T04:00:48,905 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:2973:16: warning: ‘template class std::binder1st’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-20T04:00:48,906 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); 2023-09-20T04:00:48,908 | ^~~~~~~~~ 2023-09-20T04:00:48,909 In file included from /usr/include/c++/12/bits/stl_function.h:1438, 2023-09-20T04:00:48,910 from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-20T04:00:48,911 from /usr/include/c++/12/vector:66, 2023-09-20T04:00:48,912 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/base.h:25, 2023-09-20T04:00:48,913 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/stereo/stereo.h:27, 2023-09-20T04:00:48,914 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/stereo/tetranonplanar.h:27, 2023-09-20T04:00:48,915 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/stereo/tetrahedral.h:27, 2023-09-20T04:00:48,916 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:26: 2023-09-20T04:00:48,917 /usr/include/c++/12/backward/binders.h:108:11: note: declared here 2023-09-20T04:00:48,918 108 | class binder1st 2023-09-20T04:00:48,920 | ^~~~~~~~~ 2023-09-20T04:00:48,921 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:2973:88: warning: ‘std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-20T04:00:48,922 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); 2023-09-20T04:00:48,923 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:48,925 /usr/include/c++/12/backward/binders.h:136:5: note: declared here 2023-09-20T04:00:48,926 136 | bind1st(const _Operation& __fn, const _Tp& __x) 2023-09-20T04:00:48,928 | ^~~~~~~ 2023-09-20T04:00:48,929 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp: In function ‘void OpenBabel::ImplicitRefToStereo(OBMol&, OBStereo::Ref, OBStereo::Ref)’: 2023-09-20T04:00:48,946 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:3005:16: warning: ‘template class std::binder1st’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-20T04:00:48,949 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); 2023-09-20T04:00:48,950 | ^~~~~~~~~ 2023-09-20T04:00:48,952 /usr/include/c++/12/backward/binders.h:108:11: note: declared here 2023-09-20T04:00:48,953 108 | class binder1st 2023-09-20T04:00:48,955 | ^~~~~~~~~ 2023-09-20T04:00:48,956 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:3005:93: warning: ‘std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-20T04:00:48,957 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); 2023-09-20T04:00:48,958 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:48,960 /usr/include/c++/12/backward/binders.h:136:5: note: declared here 2023-09-20T04:00:48,961 136 | bind1st(const _Operation& __fn, const _Tp& __x) 2023-09-20T04:00:48,962 | ^~~~~~~ 2023-09-20T04:00:48,963 In file included from /usr/include/c++/12/vector:70: 2023-09-20T04:00:48,964 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-20T04:00:48,966 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:00:48,967 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:00:48,968 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:48,969 In file included from /usr/include/c++/12/vector:64: 2023-09-20T04:00:48,970 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:48,972 inlined from ‘std::vector OpenBabel::CisTransFrom2D(OBMol*, const OBStereoUnitSet&, const std::map*, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:2702:27: 2023-09-20T04:00:48,973 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:48,974 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:00:48,975 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:00:48,977 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:48,978 inlined from ‘std::vector OpenBabel::CisTransFrom2D(OBMol*, const OBStereoUnitSet&, const std::map*, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:2716:27: 2023-09-20T04:00:48,980 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:48,981 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:00:48,984 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:00:48,985 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:48,986 inlined from ‘std::vector OpenBabel::CisTransFrom2D(OBMol*, const OBStereoUnitSet&, const std::map*, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:2724:27: 2023-09-20T04:00:48,988 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:48,989 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:00:48,991 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:00:48,992 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:48,994 inlined from ‘std::vector OpenBabel::CisTransFrom2D(OBMol*, const OBStereoUnitSet&, const std::map*, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:2738:27: 2023-09-20T04:00:49,005 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:49,007 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:00:49,008 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:00:49,009 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-20T04:00:49,010 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:00:49,011 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:00:49,013 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:49,014 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:49,015 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:00:49,017 inlined from ‘std::vector OpenBabel::TetrahedralFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:2147:28: 2023-09-20T04:00:49,018 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:49,019 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:00:49,020 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:49,022 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:49,023 inlined from ‘std::vector OpenBabel::TetrahedralFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:2149:28: 2023-09-20T04:00:49,024 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:49,026 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:00:49,027 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:00:49,028 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:49,029 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:00:49,031 inlined from ‘std::vector OpenBabel::TetrahedralFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:2153:30: 2023-09-20T04:00:49,032 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:49,033 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:00:49,034 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:49,036 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:49,037 inlined from ‘std::vector OpenBabel::TetrahedralFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:2155:30: 2023-09-20T04:00:49,038 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:49,039 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:00:49,076 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:00:49,077 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:49,078 inlined from ‘std::vector OpenBabel::TetrahedralFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:2180:28: 2023-09-20T04:00:49,079 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:49,081 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:00:49,082 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:00:49,082 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:49,084 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:00:49,085 inlined from ‘std::vector OpenBabel::CisTransFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:2229:29: 2023-09-20T04:00:49,086 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:49,087 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:00:49,089 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:49,090 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:49,091 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:00:49,092 inlined from ‘std::vector OpenBabel::CisTransFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:2231:29: 2023-09-20T04:00:49,093 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:49,094 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:00:49,096 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:49,099 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:49,100 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:00:49,101 inlined from ‘std::vector OpenBabel::CisTransFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:2239:29: 2023-09-20T04:00:49,102 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:49,104 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:00:49,104 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:49,106 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:49,106 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:00:49,107 inlined from ‘std::vector OpenBabel::CisTransFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:2241:29: 2023-09-20T04:00:49,109 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:49,110 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:00:49,111 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:49,112 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:49,113 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:00:49,114 inlined from ‘std::vector OpenBabel::CisTransFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:2253:29: 2023-09-20T04:00:49,116 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:49,117 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:00:49,118 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:49,119 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:49,120 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:00:49,121 inlined from ‘std::vector OpenBabel::CisTransFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:2255:29: 2023-09-20T04:00:49,123 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:49,124 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:00:49,125 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:49,126 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:49,127 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:00:49,128 inlined from ‘std::vector OpenBabel::CisTransFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:2262:29: 2023-09-20T04:00:49,130 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:49,131 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:00:49,132 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:49,133 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:00:49,134 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:00:49,135 inlined from ‘std::vector OpenBabel::CisTransFrom3D(OBMol*, const OBStereoUnitSet&, bool)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/stereo/perception.cpp:2264:29: 2023-09-20T04:00:49,136 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:00:49,137 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:00:49,138 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:00:50,425 [84/533] Linking CXX shared library lib/libopenbabel.so.7.0.0 2023-09-20T04:00:50,499 [85/533] Creating library symlink lib/libopenbabel.so.7 lib/libopenbabel.so 2023-09-20T04:00:52,893 [86/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o 2023-09-20T04:00:52,894 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:00:52,895 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/addfilename.cpp:20: 2023-09-20T04:00:52,896 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:00:52,897 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:00:52,898 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:52,899 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:00:52,900 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/addfilename.cpp:18: 2023-09-20T04:00:52,901 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:00:52,903 131 | struct binary_function 2023-09-20T04:00:52,904 | ^~~~~~~~~~~~~~~ 2023-09-20T04:00:53,062 [87/533] Linking CXX shared module lib/plugin_descriptors.so 2023-09-20T04:00:54,581 [88/533] Linking CXX shared module lib/plugin_fingerprints.so 2023-09-20T04:01:03,524 [89/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o 2023-09-20T04:01:03,525 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:03,527 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/addpolarh.cpp:20: 2023-09-20T04:01:03,528 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:03,529 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:03,530 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:03,531 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:03,532 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:01:03,533 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:01:03,534 from /usr/include/c++/12/ios:42, 2023-09-20T04:01:03,535 from /usr/include/c++/12/ostream:38, 2023-09-20T04:01:03,536 from /usr/include/c++/12/iostream:39, 2023-09-20T04:01:03,537 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/addpolarh.cpp:19: 2023-09-20T04:01:03,539 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:03,540 131 | struct binary_function 2023-09-20T04:01:03,541 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:03,544 [90/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o 2023-09-20T04:01:03,545 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:03,547 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/addinindex.cpp:21: 2023-09-20T04:01:03,548 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:03,548 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:03,549 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:03,551 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-20T04:01:03,552 from /usr/include/c++/12/vector:66, 2023-09-20T04:01:03,553 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/base.h:25, 2023-09-20T04:01:03,554 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/addinindex.cpp:19: 2023-09-20T04:01:03,567 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:03,569 131 | struct binary_function 2023-09-20T04:01:03,570 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:07,068 [91/533] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o 2023-09-20T04:01:07,069 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/forcefield.h:28, 2023-09-20T04:01:07,070 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldghemical.h:23, 2023-09-20T04:01:07,072 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldghemical.cpp:23: 2023-09-20T04:01:07,073 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:07,074 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:07,075 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:07,076 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-20T04:01:07,077 from /usr/include/c++/12/vector:66, 2023-09-20T04:01:07,079 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/mol.h:44, 2023-09-20T04:01:07,080 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldghemical.cpp:20: 2023-09-20T04:01:07,081 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:07,082 131 | struct binary_function 2023-09-20T04:01:07,083 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:07,084 In file included from /usr/include/c++/12/vector:70: 2023-09-20T04:01:07,085 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationGhemical&}; _Tp = OpenBabel::OBFFBondCalculationGhemical; _Alloc = std::allocator]’: 2023-09-20T04:01:07,086 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:07,087 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:01:07,088 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:07,090 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationGhemical&}; _Tp = OpenBabel::OBFFAngleCalculationGhemical; _Alloc = std::allocator]’: 2023-09-20T04:01:07,091 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:07,092 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationGhemical&}; _Tp = OpenBabel::OBFFTorsionCalculationGhemical; _Alloc = std::allocator]’: 2023-09-20T04:01:07,093 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:07,094 In file included from /usr/include/c++/12/vector:64: 2023-09-20T04:01:07,096 /usr/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationGhemical; _Alloc = std::allocator]’: 2023-09-20T04:01:07,097 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:07,098 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:07,099 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:07,100 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationGhemical&}; _Tp = OpenBabel::OBFFVDWCalculationGhemical; _Alloc = std::allocator]’: 2023-09-20T04:01:07,101 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:07,103 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:01:07,104 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:07,105 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationGhemical&}; _Tp = OpenBabel::OBFFElectrostaticCalculationGhemical; _Alloc = std::allocator]’: 2023-09-20T04:01:07,105 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:07,106 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFBondCalculationGhemical; _Alloc = std::allocator]’, 2023-09-20T04:01:07,107 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldghemical.cpp:477:40: 2023-09-20T04:01:07,108 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:07,109 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:07,110 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:07,111 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFBondCalculationGhemical; _Alloc = std::allocator]’, 2023-09-20T04:01:07,112 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldghemical.cpp:492:34: 2023-09-20T04:01:07,125 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:07,126 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:07,146 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:07,146 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationGhemical; _Alloc = std::allocator]’, 2023-09-20T04:01:07,147 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldghemical.cpp:542:43: 2023-09-20T04:01:07,148 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:07,150 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:07,150 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:07,152 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationGhemical; _Alloc = std::allocator]’, 2023-09-20T04:01:07,153 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldghemical.cpp:558:35: 2023-09-20T04:01:07,154 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:07,155 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:07,157 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:07,158 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationGhemical; _Alloc = std::allocator]’, 2023-09-20T04:01:07,159 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldghemical.cpp:674:37: 2023-09-20T04:01:07,160 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:07,161 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:07,162 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:07,163 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFVDWCalculationGhemical; _Alloc = std::allocator]’, 2023-09-20T04:01:07,163 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldghemical.cpp:778:33: 2023-09-20T04:01:07,165 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:07,166 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:07,167 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:07,168 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFElectrostaticCalculationGhemical; _Alloc = std::allocator]’, 2023-09-20T04:01:07,169 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldghemical.cpp:829:45: 2023-09-20T04:01:07,170 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:07,171 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:07,172 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:07,173 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T04:01:07,174 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:07,176 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:01:07,177 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:07,178 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:07,179 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:07,180 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldghemical.cpp:877:34: 2023-09-20T04:01:07,181 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:07,182 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:07,183 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:07,184 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:07,185 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:07,186 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldghemical.cpp:878:34: 2023-09-20T04:01:07,187 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:07,188 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:07,189 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:07,190 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:07,192 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:07,193 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldghemical.cpp:895:34: 2023-09-20T04:01:07,194 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:07,205 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:07,207 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:07,207 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:07,209 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:07,210 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldghemical.cpp:896:34: 2023-09-20T04:01:07,211 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:07,212 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:07,213 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:07,214 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:07,215 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:07,217 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldghemical.cpp:927:34: 2023-09-20T04:01:07,218 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:07,219 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:07,219 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:07,220 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:07,221 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:07,222 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldghemical.cpp:928:34: 2023-09-20T04:01:07,223 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:07,224 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:07,225 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:07,226 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:07,227 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:07,228 inlined from ‘virtual bool OpenBabel::OBForceFieldGhemical::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldghemical.cpp:940:34: 2023-09-20T04:01:07,229 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:07,230 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:07,231 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,336 [92/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o 2023-09-20T04:01:09,338 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:09,339 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/addnonpolarh.cpp:20: 2023-09-20T04:01:09,340 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:09,341 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:09,343 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:09,344 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:09,345 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:01:09,347 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:01:09,348 from /usr/include/c++/12/ios:42, 2023-09-20T04:01:09,349 from /usr/include/c++/12/ostream:38, 2023-09-20T04:01:09,350 from /usr/include/c++/12/iostream:39, 2023-09-20T04:01:09,351 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/addnonpolarh.cpp:19: 2023-09-20T04:01:09,352 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:09,354 131 | struct binary_function 2023-09-20T04:01:09,355 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:09,574 [93/533] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o 2023-09-20T04:01:09,575 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/forcefield.h:28, 2023-09-20T04:01:09,576 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.h:24, 2023-09-20T04:01:09,577 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:29: 2023-09-20T04:01:09,578 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:09,580 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:09,581 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:09,582 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-20T04:01:09,583 from /usr/include/c++/12/vector:66, 2023-09-20T04:01:09,584 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/mol.h:44, 2023-09-20T04:01:09,585 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:21: 2023-09-20T04:01:09,587 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:09,592 131 | struct binary_function 2023-09-20T04:01:09,607 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:09,608 In file included from /usr/include/c++/12/vector:70: 2023-09-20T04:01:09,609 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationGaff&}; _Tp = OpenBabel::OBFFBondCalculationGaff; _Alloc = std::allocator]’: 2023-09-20T04:01:09,611 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:09,612 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:01:09,615 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,616 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationGaff&}; _Tp = OpenBabel::OBFFAngleCalculationGaff; _Alloc = std::allocator]’: 2023-09-20T04:01:09,617 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:09,619 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationGaff&}; _Tp = OpenBabel::OBFFTorsionCalculationGaff; _Alloc = std::allocator]’: 2023-09-20T04:01:09,620 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:09,629 In file included from /usr/include/c++/12/vector:64: 2023-09-20T04:01:09,630 /usr/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationGaff; _Alloc = std::allocator]’: 2023-09-20T04:01:09,631 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,642 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:09,647 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:09,648 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFOOPCalculationGaff&}; _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’: 2023-09-20T04:01:09,652 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:09,653 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:01:09,655 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,656 /usr/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’: 2023-09-20T04:01:09,658 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,659 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:09,660 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:09,661 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationGaff&}; _Tp = OpenBabel::OBFFVDWCalculationGaff; _Alloc = std::allocator]’: 2023-09-20T04:01:09,663 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:09,665 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:01:09,666 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,675 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationGaff&}; _Tp = OpenBabel::OBFFElectrostaticCalculationGaff; _Alloc = std::allocator]’: 2023-09-20T04:01:09,676 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:09,678 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFBondCalculationGaff; _Alloc = std::allocator]’, 2023-09-20T04:01:09,680 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:572:40: 2023-09-20T04:01:09,681 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,682 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:09,683 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:09,684 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFBondCalculationGaff; _Alloc = std::allocator]’, 2023-09-20T04:01:09,686 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:587:34: 2023-09-20T04:01:09,688 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,689 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:09,690 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:09,692 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationGaff; _Alloc = std::allocator]’, 2023-09-20T04:01:09,705 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:637:43: 2023-09-20T04:01:09,708 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,709 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:09,711 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:09,712 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationGaff; _Alloc = std::allocator]’, 2023-09-20T04:01:09,714 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:653:35: 2023-09-20T04:01:09,715 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,716 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:09,718 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:09,719 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationGaff; _Alloc = std::allocator]’, 2023-09-20T04:01:09,720 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:724:37: 2023-09-20T04:01:09,722 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,723 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:09,725 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:09,735 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’, 2023-09-20T04:01:09,746 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:785:28: 2023-09-20T04:01:09,747 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,748 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:09,749 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:09,751 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’, 2023-09-20T04:01:09,752 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:799:28: 2023-09-20T04:01:09,754 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,755 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:09,756 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:09,758 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’, 2023-09-20T04:01:09,759 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:813:28: 2023-09-20T04:01:09,760 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,765 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:09,766 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:09,767 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’, 2023-09-20T04:01:09,768 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:827:28: 2023-09-20T04:01:09,770 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,771 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:09,772 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:09,773 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’, 2023-09-20T04:01:09,775 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:841:28: 2023-09-20T04:01:09,776 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,777 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:09,778 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:09,779 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’, 2023-09-20T04:01:09,781 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:855:28: 2023-09-20T04:01:09,783 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,784 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:09,785 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:09,787 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFVDWCalculationGaff; _Alloc = std::allocator]’, 2023-09-20T04:01:09,788 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:1003:33: 2023-09-20T04:01:09,790 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,791 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:09,792 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:09,793 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFElectrostaticCalculationGaff; _Alloc = std::allocator]’, 2023-09-20T04:01:09,796 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:1054:45: 2023-09-20T04:01:09,797 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,797 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:09,798 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:09,799 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T04:01:09,800 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:09,801 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:01:09,803 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,804 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:09,805 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:09,806 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:1099:34: 2023-09-20T04:01:09,808 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,809 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:09,811 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,812 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:09,814 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:09,815 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:1100:34: 2023-09-20T04:01:09,816 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,817 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:09,819 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,820 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:09,824 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:09,830 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:1112:34: 2023-09-20T04:01:09,831 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,832 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:09,833 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,834 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:09,835 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:09,837 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:1113:34: 2023-09-20T04:01:09,837 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,838 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:09,840 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,841 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:09,842 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:09,843 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:1125:34: 2023-09-20T04:01:09,844 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,845 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:09,846 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,847 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:09,848 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:09,849 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:1126:34: 2023-09-20T04:01:09,850 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,851 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:09,851 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,852 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:09,853 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:09,853 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:1142:34: 2023-09-20T04:01:09,854 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,855 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:09,856 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,857 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:09,857 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:09,858 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:1143:34: 2023-09-20T04:01:09,859 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,860 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:09,862 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,862 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:09,864 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:09,865 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:1144:34: 2023-09-20T04:01:09,866 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,866 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:09,867 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,868 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:09,869 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:09,870 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:1169:34: 2023-09-20T04:01:09,871 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,871 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:09,872 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,873 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:09,874 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:09,875 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:1170:34: 2023-09-20T04:01:09,876 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,876 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:09,877 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,878 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:09,879 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:09,880 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:1171:34: 2023-09-20T04:01:09,881 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,882 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:09,883 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,884 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:09,885 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:09,886 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:1182:34: 2023-09-20T04:01:09,886 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,887 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:09,888 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,889 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:09,890 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:09,891 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:1183:34: 2023-09-20T04:01:09,891 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,892 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:09,893 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,893 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:09,894 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:09,895 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:1201:34: 2023-09-20T04:01:09,896 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,896 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:09,897 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:09,898 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:09,899 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:09,900 inlined from ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldgaff.cpp:1202:34: 2023-09-20T04:01:09,901 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:09,902 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:09,903 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:13,209 [94/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o 2023-09-20T04:01:13,211 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:13,212 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/canonical.cpp:19: 2023-09-20T04:01:13,213 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:13,214 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:13,215 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:13,216 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:13,217 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:23: 2023-09-20T04:01:13,218 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:13,219 131 | struct binary_function 2023-09-20T04:01:13,220 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:14,521 [95/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o 2023-09-20T04:01:14,523 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:14,523 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/delnonpolarh.cpp:20: 2023-09-20T04:01:14,524 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:14,525 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:14,526 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:14,527 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:14,528 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:01:14,529 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:01:14,529 from /usr/include/c++/12/ios:42, 2023-09-20T04:01:14,530 from /usr/include/c++/12/ostream:38, 2023-09-20T04:01:14,531 from /usr/include/c++/12/iostream:39, 2023-09-20T04:01:14,532 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/delnonpolarh.cpp:19: 2023-09-20T04:01:14,532 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:14,533 131 | struct binary_function 2023-09-20T04:01:14,534 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:14,544 [96/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o 2023-09-20T04:01:14,545 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:14,547 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/delpolarh.cpp:20: 2023-09-20T04:01:14,554 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:14,556 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:14,557 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:14,558 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:14,560 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:01:14,561 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:01:14,563 from /usr/include/c++/12/ios:42, 2023-09-20T04:01:14,566 from /usr/include/c++/12/ostream:38, 2023-09-20T04:01:14,568 from /usr/include/c++/12/iostream:39, 2023-09-20T04:01:14,569 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/delpolarh.cpp:19: 2023-09-20T04:01:14,571 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:14,572 131 | struct binary_function 2023-09-20T04:01:14,573 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:16,524 [97/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o 2023-09-20T04:01:16,525 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:16,526 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/changecell.cpp:20: 2023-09-20T04:01:16,528 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:16,529 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:16,530 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:16,531 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:16,531 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:01:16,532 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:01:16,533 from /usr/include/c++/12/ios:42, 2023-09-20T04:01:16,534 from /usr/include/c++/12/ostream:38, 2023-09-20T04:01:16,535 from /usr/include/c++/12/iostream:39, 2023-09-20T04:01:16,536 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/changecell.cpp:19: 2023-09-20T04:01:16,538 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:16,539 131 | struct binary_function 2023-09-20T04:01:16,540 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:18,951 [98/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o 2023-09-20T04:01:18,952 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:18,953 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/gen2D.cpp:22: 2023-09-20T04:01:18,954 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:18,955 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:18,956 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:18,957 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:18,958 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:01:18,959 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:01:18,960 from /usr/include/c++/12/ios:42, 2023-09-20T04:01:18,961 from /usr/include/c++/12/ostream:38, 2023-09-20T04:01:18,962 from /usr/include/c++/12/iostream:39, 2023-09-20T04:01:18,963 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/gen2D.cpp:21: 2023-09-20T04:01:18,964 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:18,965 131 | struct binary_function 2023-09-20T04:01:18,966 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:22,156 [99/533] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o 2023-09-20T04:01:22,157 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/forcefield.h:28, 2023-09-20T04:01:22,158 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.h:24, 2023-09-20T04:01:22,159 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:32: 2023-09-20T04:01:22,160 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:22,161 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:22,162 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:22,163 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-20T04:01:22,164 from /usr/include/c++/12/vector:66, 2023-09-20T04:01:22,165 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/mol.h:44, 2023-09-20T04:01:22,166 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:21: 2023-09-20T04:01:22,166 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:22,167 131 | struct binary_function 2023-09-20T04:01:22,168 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:22,169 In file included from /usr/include/c++/12/vector:70: 2023-09-20T04:01:22,170 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationUFF&}; _Tp = OpenBabel::OBFFBondCalculationUFF; _Alloc = std::allocator]’: 2023-09-20T04:01:22,186 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:22,187 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:01:22,187 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:22,189 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationUFF&}; _Tp = OpenBabel::OBFFVDWCalculationUFF; _Alloc = std::allocator]’: 2023-09-20T04:01:22,191 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:22,192 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationUFF&}; _Tp = OpenBabel::OBFFAngleCalculationUFF; _Alloc = std::allocator]’: 2023-09-20T04:01:22,192 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:22,193 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationUFF&}; _Tp = OpenBabel::OBFFTorsionCalculationUFF; _Alloc = std::allocator]’: 2023-09-20T04:01:22,194 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:22,195 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFOOPCalculationUFF&}; _Tp = OpenBabel::OBFFOOPCalculationUFF; _Alloc = std::allocator]’: 2023-09-20T04:01:22,196 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:22,197 In file included from /usr/include/c++/12/vector:64: 2023-09-20T04:01:22,198 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFBondCalculationUFF; _Alloc = std::allocator]’, 2023-09-20T04:01:22,199 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:969:34: 2023-09-20T04:01:22,200 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,202 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:22,203 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:22,204 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFVDWCalculationUFF; _Alloc = std::allocator]’, 2023-09-20T04:01:22,205 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:1038:37: 2023-09-20T04:01:22,206 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,207 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:22,208 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:22,209 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationUFF; _Alloc = std::allocator]’, 2023-09-20T04:01:22,210 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:1186:35: 2023-09-20T04:01:22,211 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,212 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:22,213 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:22,213 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationUFF; _Alloc = std::allocator]’, 2023-09-20T04:01:22,214 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:1332:37: 2023-09-20T04:01:22,216 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,217 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:22,218 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:22,219 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationUFF; _Alloc = std::allocator]’, 2023-09-20T04:01:22,220 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:1454:33: 2023-09-20T04:01:22,221 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,222 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:22,223 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:22,224 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationUFF; _Alloc = std::allocator]’, 2023-09-20T04:01:22,225 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:1461:33: 2023-09-20T04:01:22,226 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,235 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:22,237 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:22,237 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationUFF; _Alloc = std::allocator]’, 2023-09-20T04:01:22,238 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:1469:33: 2023-09-20T04:01:22,239 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,240 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:22,241 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:22,242 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFVDWCalculationUFF; _Alloc = std::allocator]’, 2023-09-20T04:01:22,243 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:1513:35: 2023-09-20T04:01:22,244 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,245 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:22,246 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:22,247 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationUFF&}; _Tp = OpenBabel::OBFFElectrostaticCalculationUFF; _Alloc = std::allocator]’: 2023-09-20T04:01:22,248 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:22,249 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:01:22,250 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:22,250 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFElectrostaticCalculationUFF; _Alloc = std::allocator]’, 2023-09-20T04:01:22,251 inlined from ‘bool OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:1585:45: 2023-09-20T04:01:22,252 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,253 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:22,254 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:22,255 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T04:01:22,256 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:22,257 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:01:22,258 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:22,259 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:22,260 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:22,261 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:1635:34: 2023-09-20T04:01:22,262 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,263 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:22,264 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:22,265 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:22,266 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:22,267 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:1636:34: 2023-09-20T04:01:22,268 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,269 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:22,270 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:22,271 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:22,272 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:22,273 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:1637:34: 2023-09-20T04:01:22,273 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,274 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:22,275 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:22,285 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:22,286 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:22,287 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:1638:34: 2023-09-20T04:01:22,288 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,289 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:22,290 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:22,291 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:22,291 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:22,292 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:1639:34: 2023-09-20T04:01:22,293 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,294 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:22,295 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:22,296 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:22,297 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:22,298 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:1640:34: 2023-09-20T04:01:22,299 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,300 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:22,301 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:22,302 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:22,303 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:22,304 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:1641:34: 2023-09-20T04:01:22,305 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,306 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:22,307 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:22,308 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:22,309 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:22,310 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:1642:34: 2023-09-20T04:01:22,311 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,312 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:22,313 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:22,314 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:22,315 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:22,316 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:1643:34: 2023-09-20T04:01:22,317 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,317 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:22,318 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:22,319 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:22,320 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:22,321 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:1644:34: 2023-09-20T04:01:22,322 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,325 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:22,326 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:22,327 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:22,328 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:22,330 inlined from ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefielduff.cpp:1645:34: 2023-09-20T04:01:22,330 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:22,331 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:22,332 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:25,784 [100/533] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o 2023-09-20T04:01:25,785 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T04:01:25,787 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T04:01:25,788 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:31: 2023-09-20T04:01:25,789 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:25,790 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:25,791 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:25,793 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:25,794 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:01:25,795 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:01:25,796 from /usr/include/c++/12/ios:42, 2023-09-20T04:01:25,797 from /usr/include/c++/12/ostream:38, 2023-09-20T04:01:25,797 from /usr/include/c++/12/iostream:39, 2023-09-20T04:01:25,798 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:24: 2023-09-20T04:01:25,799 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:25,800 131 | struct binary_function 2023-09-20T04:01:25,801 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:25,802 In file included from /usr/include/c++/12/vector:70, 2023-09-20T04:01:25,803 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:30: 2023-09-20T04:01:25,805 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationMMFF94&}; _Tp = OpenBabel::OBFFBondCalculationMMFF94; _Alloc = std::allocator]’: 2023-09-20T04:01:25,806 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:25,807 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:01:25,808 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:25,810 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationMMFF94&}; _Tp = OpenBabel::OBFFAngleCalculationMMFF94; _Alloc = std::allocator]’: 2023-09-20T04:01:25,812 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:25,813 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFStrBndCalculationMMFF94&}; _Tp = OpenBabel::OBFFStrBndCalculationMMFF94; _Alloc = std::allocator]’: 2023-09-20T04:01:25,814 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:25,815 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationMMFF94&}; _Tp = OpenBabel::OBFFTorsionCalculationMMFF94; _Alloc = std::allocator]’: 2023-09-20T04:01:25,816 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:25,817 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFOOPCalculationMMFF94&}; _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator]’: 2023-09-20T04:01:25,818 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:25,819 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationMMFF94&}; _Tp = OpenBabel::OBFFVDWCalculationMMFF94; _Alloc = std::allocator]’: 2023-09-20T04:01:25,820 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:25,821 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationMMFF94&}; _Tp = OpenBabel::OBFFElectrostaticCalculationMMFF94; _Alloc = std::allocator]’: 2023-09-20T04:01:25,822 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:25,823 In file included from /usr/include/c++/12/vector:64: 2023-09-20T04:01:25,824 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFBondCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-20T04:01:25,824 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:2765:38: 2023-09-20T04:01:25,828 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,834 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:25,835 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:25,836 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFBondCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-20T04:01:25,837 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:2775:36: 2023-09-20T04:01:25,838 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,839 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:25,840 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:25,840 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-20T04:01:25,841 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:2931:35: 2023-09-20T04:01:25,842 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,843 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:25,844 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:25,846 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFStrBndCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-20T04:01:25,847 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:3074:36: 2023-09-20T04:01:25,848 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,849 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:25,850 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:25,851 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-20T04:01:25,852 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:3350:37: 2023-09-20T04:01:25,853 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,854 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:25,855 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:25,856 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-20T04:01:25,857 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:3429:41: 2023-09-20T04:01:25,858 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,859 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:25,860 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:25,861 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-20T04:01:25,862 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:3436:41: 2023-09-20T04:01:25,863 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,864 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:25,865 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:25,866 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-20T04:01:25,867 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:3444:41: 2023-09-20T04:01:25,868 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,870 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:25,870 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:25,871 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-20T04:01:25,872 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:3458:41: 2023-09-20T04:01:25,873 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,874 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:25,874 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:25,875 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-20T04:01:25,877 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:3465:41: 2023-09-20T04:01:25,878 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,879 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:25,880 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:25,881 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-20T04:01:25,883 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:3473:41: 2023-09-20T04:01:25,884 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,885 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:25,886 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:25,896 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFVDWCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-20T04:01:25,897 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:3609:33: 2023-09-20T04:01:25,898 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,899 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:25,900 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:25,901 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFElectrostaticCalculationMMFF94; _Alloc = std::allocator]’, 2023-09-20T04:01:25,903 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:3671:45: 2023-09-20T04:01:25,905 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,905 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:25,906 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:25,907 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T04:01:25,908 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:25,909 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:01:25,910 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:25,911 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:25,912 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:25,913 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamPbci(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:1270:32: 2023-09-20T04:01:25,914 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,915 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:25,917 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:25,918 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:25,921 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:25,922 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamPbci(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:1271:32: 2023-09-20T04:01:25,926 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,927 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:25,928 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:25,929 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:25,930 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:25,931 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamCharge(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:1238:32: 2023-09-20T04:01:25,932 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,934 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:25,935 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:25,938 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:25,939 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:25,939 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamBndk(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:982:32: 2023-09-20T04:01:25,941 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,943 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:25,946 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:25,947 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:25,948 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:25,948 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamBndk(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:983:32: 2023-09-20T04:01:25,956 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,957 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:25,958 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:25,959 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:25,960 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:25,961 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamOOP(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:1125:32: 2023-09-20T04:01:25,962 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,963 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:25,964 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:25,965 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:25,966 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:25,967 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamDfsb(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:1089:32: 2023-09-20T04:01:25,968 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,969 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:25,971 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:25,971 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:25,972 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:25,973 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamDfsb(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:1090:32: 2023-09-20T04:01:25,974 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,975 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:25,985 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:25,986 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:25,987 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:25,988 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamBond(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:948:32: 2023-09-20T04:01:25,989 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,990 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:25,992 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:25,993 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:25,994 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:25,995 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamBond(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:949:32: 2023-09-20T04:01:25,996 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:25,997 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:25,998 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:25,999 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,000 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,002 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamAngle(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:1018:32: 2023-09-20T04:01:26,003 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,004 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,006 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,007 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,008 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,009 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamAngle(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:1019:32: 2023-09-20T04:01:26,010 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,011 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,012 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,013 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,013 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,014 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamStrBnd(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:1054:32: 2023-09-20T04:01:26,015 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,016 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,017 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,019 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,020 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,021 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamStrBnd(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:1055:32: 2023-09-20T04:01:26,022 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,023 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,024 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,025 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,026 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,028 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamVDW(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:1195:32: 2023-09-20T04:01:26,029 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,030 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,031 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,045 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,046 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,047 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamVDW(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:1196:32: 2023-09-20T04:01:26,048 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,049 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,050 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,051 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,051 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,052 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamVDW(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:1197:32: 2023-09-20T04:01:26,053 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,054 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,055 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,056 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,058 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,059 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamVDW(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:1198:32: 2023-09-20T04:01:26,060 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,061 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,062 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,063 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,064 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,065 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamTorsion(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:1161:32: 2023-09-20T04:01:26,066 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,067 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,068 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,069 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,070 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,071 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamTorsion(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:1162:32: 2023-09-20T04:01:26,072 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,073 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,074 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,075 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,076 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,076 inlined from ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamTorsion(std::string&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:1163:32: 2023-09-20T04:01:26,077 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,078 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,080 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,081 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,082 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,083 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:4100:31: 2023-09-20T04:01:26,084 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,085 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,095 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,096 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,097 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,099 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:4101:31: 2023-09-20T04:01:26,100 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,101 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,102 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,103 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,104 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,104 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:4102:31: 2023-09-20T04:01:26,105 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,106 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,107 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,108 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,108 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,109 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:4103:31: 2023-09-20T04:01:26,110 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,111 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,112 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,114 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,115 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,116 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:4106:33: 2023-09-20T04:01:26,117 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,118 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,119 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,120 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,121 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,122 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:4108:33: 2023-09-20T04:01:26,123 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,125 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,126 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,126 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,127 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,128 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:4110:33: 2023-09-20T04:01:26,129 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,130 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,131 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,132 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,133 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,134 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:4119:31: 2023-09-20T04:01:26,135 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,136 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,138 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,139 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,140 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,141 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:4120:31: 2023-09-20T04:01:26,155 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,157 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,158 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,159 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,160 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,161 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:4121:31: 2023-09-20T04:01:26,162 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,164 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,165 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,166 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,166 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,167 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:4122:31: 2023-09-20T04:01:26,168 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,169 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,170 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,171 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,172 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,173 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:4125:33: 2023-09-20T04:01:26,174 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,175 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,176 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,177 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,178 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,180 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:4127:33: 2023-09-20T04:01:26,181 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,182 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,183 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,184 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,185 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,186 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:4129:33: 2023-09-20T04:01:26,187 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,189 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,189 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,190 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:26,191 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:26,192 inlined from ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/forcefields/forcefieldmmff94.cpp:4150:33: 2023-09-20T04:01:26,193 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:26,194 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:26,195 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:26,354 [101/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o 2023-09-20T04:01:26,354 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:26,356 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/forcefield.cpp:31: 2023-09-20T04:01:26,357 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:26,358 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:26,359 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:26,361 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:26,363 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:01:26,364 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:01:26,366 from /usr/include/c++/12/ios:42, 2023-09-20T04:01:26,367 from /usr/include/c++/12/ostream:38, 2023-09-20T04:01:26,368 from /usr/include/c++/12/iostream:39, 2023-09-20T04:01:26,370 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/forcefield.cpp:29: 2023-09-20T04:01:26,371 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:26,372 131 | struct binary_function 2023-09-20T04:01:26,373 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:26,755 [102/533] Linking CXX shared module lib/plugin_forcefields.so 2023-09-20T04:01:28,398 [103/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o 2023-09-20T04:01:28,399 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:28,400 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/largest.cpp:19: 2023-09-20T04:01:28,401 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:28,402 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:28,403 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:28,404 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:28,405 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:23: 2023-09-20T04:01:28,406 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:28,407 131 | struct binary_function 2023-09-20T04:01:28,408 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:28,419 [104/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o 2023-09-20T04:01:28,420 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:28,420 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/fillUC.cpp:20: 2023-09-20T04:01:28,421 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:28,422 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:28,423 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:28,424 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:28,424 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:23: 2023-09-20T04:01:28,425 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:28,426 131 | struct binary_function 2023-09-20T04:01:28,427 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:28,428 In file included from /usr/include/c++/12/vector:70, 2023-09-20T04:01:28,429 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/dlhandler.h:25, 2023-09-20T04:01:28,430 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:23: 2023-09-20T04:01:28,432 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-20T04:01:28,433 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:28,433 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:01:28,435 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:28,436 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:01:28,437 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:28,438 inlined from ‘virtual bool OpenBabel::OpFillUC::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/fillUC.cpp:176:30: 2023-09-20T04:01:28,439 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:28,440 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:28,441 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:29,829 [105/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o 2023-09-20T04:01:29,831 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:29,832 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/gen3d.cpp:20: 2023-09-20T04:01:29,833 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:29,834 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:29,835 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:29,836 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:29,837 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:23: 2023-09-20T04:01:29,838 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:29,839 131 | struct binary_function 2023-09-20T04:01:29,840 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:30,562 [106/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o 2023-09-20T04:01:30,563 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/loader.cpp:24: 2023-09-20T04:01:30,566 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:30,567 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:30,568 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:30,569 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:30,570 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/loader.cpp:19: 2023-09-20T04:01:30,571 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:30,572 131 | struct binary_function 2023-09-20T04:01:30,573 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:32,992 [107/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o 2023-09-20T04:01:32,993 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:32,994 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/neutralize.cpp:19: 2023-09-20T04:01:32,995 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:32,996 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:32,997 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:32,998 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:32,999 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:23: 2023-09-20T04:01:33,000 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:33,001 131 | struct binary_function 2023-09-20T04:01:33,002 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:36,728 [108/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o 2023-09-20T04:01:36,729 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T04:01:36,730 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T04:01:36,732 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/opsplit.cpp:19: 2023-09-20T04:01:36,733 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:36,734 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:36,735 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:36,736 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:36,737 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:01:36,738 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:01:36,739 from /usr/include/c++/12/ios:42, 2023-09-20T04:01:36,740 from /usr/include/c++/12/ostream:38, 2023-09-20T04:01:36,741 from /usr/include/c++/12/iostream:39, 2023-09-20T04:01:36,742 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:24: 2023-09-20T04:01:36,743 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:36,744 131 | struct binary_function 2023-09-20T04:01:36,745 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:37,038 [109/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o 2023-09-20T04:01:37,039 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:37,040 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/partialcharges.cpp:20: 2023-09-20T04:01:37,041 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:37,042 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:37,043 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:37,044 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:37,045 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:23: 2023-09-20T04:01:37,046 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:37,048 131 | struct binary_function 2023-09-20T04:01:37,049 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:37,862 [110/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o 2023-09-20T04:01:37,864 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:37,864 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/readconformers.cpp:19: 2023-09-20T04:01:37,865 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:37,866 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:37,867 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:37,868 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:37,885 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:23: 2023-09-20T04:01:37,886 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:37,888 131 | struct binary_function 2023-09-20T04:01:37,889 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:39,191 [111/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o 2023-09-20T04:01:39,192 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:39,193 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/optransform.h:21, 2023-09-20T04:01:39,194 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/optransform.cpp:19: 2023-09-20T04:01:39,195 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:39,196 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:39,197 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:39,198 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:39,199 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/parsmart.h:23, 2023-09-20T04:01:39,201 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/phmodel.h:23, 2023-09-20T04:01:39,202 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/optransform.h:19: 2023-09-20T04:01:39,203 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:39,204 131 | struct binary_function 2023-09-20T04:01:39,205 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:43,034 [112/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o 2023-09-20T04:01:43,035 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:43,037 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/xout.cpp:19: 2023-09-20T04:01:43,038 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:43,038 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:43,039 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:43,040 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:43,041 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:23: 2023-09-20T04:01:43,043 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:43,044 131 | struct binary_function 2023-09-20T04:01:43,045 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:44,303 [113/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o 2023-09-20T04:01:44,304 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T04:01:44,305 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T04:01:44,306 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/ophighlight.cpp:17: 2023-09-20T04:01:44,307 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:44,308 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:44,309 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:44,310 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:44,311 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/parsmart.h:23, 2023-09-20T04:01:44,311 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/ophighlight.cpp:16: 2023-09-20T04:01:44,312 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:44,313 131 | struct binary_function 2023-09-20T04:01:44,314 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:44,362 [114/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o 2023-09-20T04:01:44,363 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:44,364 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/sort.cpp:19: 2023-09-20T04:01:44,365 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:44,367 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:44,368 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:44,369 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:44,370 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:23: 2023-09-20T04:01:44,372 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:44,373 131 | struct binary_function 2023-09-20T04:01:44,374 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:44,375 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/sort.cpp:32:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:44,376 32 | struct Order : public std::binary_function, std::pair, bool> 2023-09-20T04:01:44,378 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:44,379 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:44,380 131 | struct binary_function 2023-09-20T04:01:44,381 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:44,382 In file included from /usr/include/c++/12/bits/stl_algo.h:60, 2023-09-20T04:01:44,383 from /usr/include/c++/12/algorithm:61, 2023-09-20T04:01:44,385 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/deferred.h:5, 2023-09-20T04:01:44,386 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/sort.cpp:24: 2023-09-20T04:01:44,387 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2023-09-20T04:01:44,388 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:01:44,389 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2023-09-20T04:01:44,390 | ^~~~~~~~~~~~~ 2023-09-20T04:01:44,391 In file included from /usr/include/c++/12/vector:70, 2023-09-20T04:01:44,392 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/dlhandler.h:25, 2023-09-20T04:01:44,392 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:23: 2023-09-20T04:01:44,393 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: 2023-09-20T04:01:44,394 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-20T04:01:44,395 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:01:44,396 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:44,397 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2023-09-20T04:01:44,398 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:01:44,406 82 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, 2023-09-20T04:01:44,408 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:44,409 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:01:44,410 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:01:44,411 /usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:01:44,412 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2023-09-20T04:01:44,415 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:01:44,416 1908 | __introsort_loop(_RandomAccessIterator __first, 2023-09-20T04:01:44,417 | ^~~~~~~~~~~~~~~~ 2023-09-20T04:01:44,418 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:01:44,419 In function ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’, 2023-09-20T04:01:44,420 inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’ at /usr/include/c++/12/bits/stl_algo.h:1921:38: 2023-09-20T04:01:44,422 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:01:44,423 1887 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2023-09-20T04:01:44,424 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:44,424 1888 | __comp); 2023-09-20T04:01:44,425 | ~~~~~~~ 2023-09-20T04:01:44,426 /usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:01:44,427 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2023-09-20T04:01:44,428 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:01:44,429 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2023-09-20T04:01:44,430 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:44,431 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter >]’: 2023-09-20T04:01:44,432 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:01:44,434 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2023-09-20T04:01:44,435 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:44,437 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2023-09-20T04:01:44,438 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:01:44,440 1802 | __insertion_sort(_RandomAccessIterator __first, 2023-09-20T04:01:44,442 | ^~~~~~~~~~~~~~~~ 2023-09-20T04:01:44,444 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:01:44,446 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, 2023-09-20T04:01:44,449 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:44,451 inlined from ‘virtual bool OpenBabel::OpSort::ProcessVec(std::vector&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/sort.cpp:118:23: 2023-09-20T04:01:44,454 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:01:44,456 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:44,458 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:44,461 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’, 2023-09-20T04:01:44,463 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = OpenBabel::Order]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T04:01:44,464 inlined from ‘virtual bool OpenBabel::OpSort::ProcessVec(std::vector&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/sort.cpp:121:14: 2023-09-20T04:01:44,465 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:01:44,466 1937 | std::__introsort_loop(__first, __last, 2023-09-20T04:01:44,468 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-09-20T04:01:44,468 1938 | std::__lg(__last - __first) * 2, 2023-09-20T04:01:44,469 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:44,470 1939 | __comp); 2023-09-20T04:01:44,471 | ~~~~~~~ 2023-09-20T04:01:44,472 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’, 2023-09-20T04:01:44,473 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2023-09-20T04:01:44,474 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = OpenBabel::Order]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2023-09-20T04:01:44,475 inlined from ‘virtual bool OpenBabel::OpSort::ProcessVec(std::vector&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/sort.cpp:121:14: 2023-09-20T04:01:44,476 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:01:44,476 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2023-09-20T04:01:44,477 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:44,478 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:01:44,479 1854 | std::__insertion_sort(__first, __last, __comp); 2023-09-20T04:01:44,480 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:49,580 [115/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o 2023-09-20T04:01:49,581 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:49,582 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/opisomorph.h:15, 2023-09-20T04:01:49,583 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/opisomorph.cpp:17: 2023-09-20T04:01:49,583 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:49,584 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:49,586 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:49,587 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:49,588 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/parsmart.h:23, 2023-09-20T04:01:49,589 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/opisomorph.cpp:15: 2023-09-20T04:01:49,590 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:49,591 131 | struct binary_function 2023-09-20T04:01:49,593 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:49,673 [116/533] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o 2023-09-20T04:01:49,674 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/chargemodel.h:24, 2023-09-20T04:01:49,675 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/gasteiger.cpp:20: 2023-09-20T04:01:49,676 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:49,677 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:49,678 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:49,679 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:49,681 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/dlhandler.h:24, 2023-09-20T04:01:49,682 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:23: 2023-09-20T04:01:49,683 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:49,685 131 | struct binary_function 2023-09-20T04:01:49,686 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:51,132 [117/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o 2023-09-20T04:01:51,134 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:51,134 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/conformer.cpp:32: 2023-09-20T04:01:51,135 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:51,136 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:51,137 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:51,138 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:51,139 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:01:51,140 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:01:51,140 from /usr/include/c++/12/ios:42, 2023-09-20T04:01:51,141 from /usr/include/c++/12/ostream:38, 2023-09-20T04:01:51,142 from /usr/include/c++/12/iostream:39, 2023-09-20T04:01:51,143 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/conformer.cpp:29: 2023-09-20T04:01:51,144 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:51,145 131 | struct binary_function 2023-09-20T04:01:51,147 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:52,052 [118/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o 2023-09-20T04:01:52,053 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:52,054 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/opconfab.cpp:23: 2023-09-20T04:01:52,055 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:52,056 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:52,057 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:52,058 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:52,059 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:01:52,060 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:01:52,061 from /usr/include/c++/12/ios:42, 2023-09-20T04:01:52,062 from /usr/include/c++/12/ostream:38, 2023-09-20T04:01:52,063 from /usr/include/c++/12/iostream:39, 2023-09-20T04:01:52,064 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/opconfab.cpp:22: 2023-09-20T04:01:52,065 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:52,066 131 | struct binary_function 2023-09-20T04:01:52,067 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:54,992 [119/533] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o 2023-09-20T04:01:54,993 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/chargemodel.h:24, 2023-09-20T04:01:54,994 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/eem.cpp:24: 2023-09-20T04:01:54,995 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:54,996 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:54,997 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:54,998 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:54,999 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/eem.cpp:19: 2023-09-20T04:01:54,999 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:55,000 131 | struct binary_function 2023-09-20T04:01:55,001 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:55,002 In file included from /usr/include/c++/12/vector:70, 2023-09-20T04:01:55,003 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/eem.cpp:20: 2023-09-20T04:01:55,004 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::EEMParameter&}; _Tp = OpenBabel::EEMParameter; _Alloc = std::allocator]’: 2023-09-20T04:01:55,005 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:55,006 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:01:55,007 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:55,008 In file included from /usr/include/c++/12/vector:64: 2023-09-20T04:01:55,009 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::EEMParameter; _Alloc = std::allocator]’, 2023-09-20T04:01:55,011 inlined from ‘void OpenBabel::EEMCharges::_loadParameters()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/eem.cpp:114:28: 2023-09-20T04:01:55,012 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:55,014 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:55,015 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:56,524 [120/533] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o 2023-09-20T04:01:56,525 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/chargemodel.h:24, 2023-09-20T04:01:56,526 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/none.cpp:21: 2023-09-20T04:01:56,527 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:56,528 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:56,529 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:56,531 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:56,532 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/dlhandler.h:24, 2023-09-20T04:01:56,533 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:23: 2023-09-20T04:01:56,534 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:56,535 131 | struct binary_function 2023-09-20T04:01:56,536 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:57,331 [121/533] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o 2023-09-20T04:01:57,332 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:01:57,333 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/opalign.cpp:20: 2023-09-20T04:01:57,334 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:57,335 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:57,336 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:57,337 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:57,338 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:01:57,339 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:01:57,340 from /usr/include/c++/12/ios:42, 2023-09-20T04:01:57,340 from /usr/include/c++/12/ostream:38, 2023-09-20T04:01:57,341 from /usr/include/c++/12/iostream:39, 2023-09-20T04:01:57,342 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/opalign.cpp:19: 2023-09-20T04:01:57,343 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:57,344 131 | struct binary_function 2023-09-20T04:01:57,345 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:57,346 In file included from /usr/include/c++/12/vector:70, 2023-09-20T04:01:57,347 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/dlhandler.h:25, 2023-09-20T04:01:57,348 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:23: 2023-09-20T04:01:57,349 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2023-09-20T04:01:57,350 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:57,351 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:01:57,352 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:57,353 In file included from /usr/include/c++/12/vector:64: 2023-09-20T04:01:57,354 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:01:57,355 inlined from ‘virtual bool OpenBabel::OpAlign::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/opalign.cpp:172:28: 2023-09-20T04:01:57,356 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:57,357 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:57,358 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:57,359 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator]’, 2023-09-20T04:01:57,360 inlined from ‘virtual bool OpenBabel::OpAlign::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/opalign.cpp:217:20: 2023-09-20T04:01:57,361 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:57,362 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:01:57,363 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:01:58,143 [122/533] Linking CXX shared module lib/plugin_ops.so 2023-09-20T04:01:59,343 [123/533] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o 2023-09-20T04:01:59,344 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/chargemodel.h:24, 2023-09-20T04:01:59,345 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/mmff94.cpp:20: 2023-09-20T04:01:59,346 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:01:59,347 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:01:59,348 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:59,349 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:01:59,350 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/dlhandler.h:24, 2023-09-20T04:01:59,351 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:23: 2023-09-20T04:01:59,352 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:01:59,353 131 | struct binary_function 2023-09-20T04:01:59,354 | ^~~~~~~~~~~~~~~ 2023-09-20T04:01:59,355 In file included from /usr/include/c++/12/vector:70, 2023-09-20T04:01:59,356 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/dlhandler.h:25: 2023-09-20T04:01:59,357 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T04:01:59,358 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:01:59,360 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:01:59,361 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:59,362 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:59,363 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:59,364 inlined from ‘virtual bool OpenBabel::MMFF94Charges::ComputeCharges(OpenBabel::OBMol&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/mmff94.cpp:72:33: 2023-09-20T04:01:59,365 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:59,366 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:59,367 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:01:59,368 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:01:59,369 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:01:59,370 inlined from ‘virtual bool OpenBabel::MMFF94Charges::ComputeCharges(OpenBabel::OBMol&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/mmff94.cpp:73:32: 2023-09-20T04:01:59,371 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:01:59,372 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:01:59,373 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:02:02,351 [124/533] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o 2023-09-20T04:02:02,352 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/chargemodel.h:24, 2023-09-20T04:02:02,353 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/fromfile.cpp:21: 2023-09-20T04:02:02,354 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:02:02,355 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:02:02,356 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:02,357 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:02:02,358 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/dlhandler.h:24, 2023-09-20T04:02:02,359 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:23: 2023-09-20T04:02:02,360 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:02:02,361 131 | struct binary_function 2023-09-20T04:02:02,362 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:02,363 In file included from /usr/include/c++/12/map:60, 2023-09-20T04:02:02,364 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:27: 2023-09-20T04:02:02,365 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2023-09-20T04:02:02,366 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2023-09-20T04:02:02,368 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2023-09-20T04:02:02,369 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:02:02,370 In file included from /usr/include/c++/12/map:61: 2023-09-20T04:02:02,371 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]’, 2023-09-20T04:02:02,371 inlined from ‘virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/fromfile.cpp:118:32: 2023-09-20T04:02:02,372 /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2023-09-20T04:02:02,373 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2023-09-20T04:02:02,374 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:02:02,375 531 | std::forward_as_tuple(std::move(__k)), 2023-09-20T04:02:02,376 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:02:02,377 532 | std::tuple<>()); 2023-09-20T04:02:02,378 | ~~~~~~~~~~~~~~~ 2023-09-20T04:02:02,379 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]’, 2023-09-20T04:02:02,380 inlined from ‘virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/fromfile.cpp:126:32: 2023-09-20T04:02:02,381 /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2023-09-20T04:02:02,382 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2023-09-20T04:02:02,386 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:02:02,387 531 | std::forward_as_tuple(std::move(__k)), 2023-09-20T04:02:02,388 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:02:02,389 532 | std::tuple<>()); 2023-09-20T04:02:02,390 | ~~~~~~~~~~~~~~~ 2023-09-20T04:02:02,391 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]’, 2023-09-20T04:02:02,394 inlined from ‘virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/fromfile.cpp:134:32: 2023-09-20T04:02:02,395 /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2023-09-20T04:02:02,397 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2023-09-20T04:02:02,398 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:02:02,399 531 | std::forward_as_tuple(std::move(__k)), 2023-09-20T04:02:02,399 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:02:02,406 532 | std::tuple<>()); 2023-09-20T04:02:02,407 | ~~~~~~~~~~~~~~~ 2023-09-20T04:02:15,863 [125/533] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o 2023-09-20T04:02:15,864 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T04:02:15,865 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T04:02:15,866 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obmolecformat.h:36, 2023-09-20T04:02:15,867 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/formats/mol2format.cpp:17: 2023-09-20T04:02:15,868 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:02:15,869 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:02:15,870 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:15,871 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:02:15,872 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:02:15,873 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:02:15,874 from /usr/include/c++/12/ios:42, 2023-09-20T04:02:15,874 from /usr/include/c++/12/ostream:38, 2023-09-20T04:02:15,876 from /usr/include/c++/12/iostream:39, 2023-09-20T04:02:15,877 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:24: 2023-09-20T04:02:15,878 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:02:15,879 131 | struct binary_function 2023-09-20T04:02:15,880 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:21,127 [126/533] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o 2023-09-20T04:02:21,128 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T04:02:21,129 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T04:02:21,129 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obmolecformat.h:36, 2023-09-20T04:02:21,131 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/formats/pdbformat.cpp:17: 2023-09-20T04:02:21,132 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:02:21,133 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:02:21,134 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:21,134 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:02:21,135 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:02:21,136 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:02:21,137 from /usr/include/c++/12/ios:42, 2023-09-20T04:02:21,138 from /usr/include/c++/12/ostream:38, 2023-09-20T04:02:21,139 from /usr/include/c++/12/iostream:39, 2023-09-20T04:02:21,139 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:24: 2023-09-20T04:02:21,140 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:02:21,141 131 | struct binary_function 2023-09-20T04:02:21,142 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:23,683 [127/533] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o 2023-09-20T04:02:31,393 [128/533] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o 2023-09-20T04:02:31,394 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:25, 2023-09-20T04:02:31,395 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/unique.cpp:19: 2023-09-20T04:02:31,396 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:02:31,397 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:02:31,398 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:31,400 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:02:31,401 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/op.h:23: 2023-09-20T04:02:31,402 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:02:31,403 131 | struct binary_function 2023-09-20T04:02:31,405 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:31,406 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/ops/unique.cpp:23: 2023-09-20T04:02:31,407 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/inchiformat.h:134:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:02:31,408 134 | : public std::binary_function 2023-09-20T04:02:31,409 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:31,410 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:02:31,411 131 | struct binary_function 2023-09-20T04:02:31,412 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:32,321 [129/533] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o 2023-09-20T04:02:32,322 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T04:02:32,323 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T04:02:32,324 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obmolecformat.h:36, 2023-09-20T04:02:32,326 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/formats/mdlformat.cpp:35: 2023-09-20T04:02:32,327 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:02:32,327 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:02:32,328 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:32,329 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-20T04:02:32,330 from /usr/include/c++/12/vector:66, 2023-09-20T04:02:32,331 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/formats/mdlformat.cpp:26: 2023-09-20T04:02:32,332 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:02:32,333 131 | struct binary_function 2023-09-20T04:02:32,334 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:35,486 [130/533] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o 2023-09-20T04:02:35,487 FAILED: src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o 2023-09-20T04:02:35,488 /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -Dasciiformat_EXPORTS -I/tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/build/temp.linux-armv7l-cpython-311_OpenBabel/include -I/tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/data -I/tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include -I/usr/include/eigen3 -I/tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/external/rapidjson-1.1.0/include -I/usr/include/cairo -I/tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/inchi -I/usr/include/libxml2 -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -MF src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o.d -o src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/depict/asciipainter.cpp 2023-09-20T04:02:35,489 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/depict/asciipainter.cpp:18: 2023-09-20T04:02:35,490 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obutil.h: In member function ‘void OpenBabel::OBStopwatch::Start()’: 2023-09-20T04:02:35,491 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obutil.h:65:14: error: ‘clock’ was not declared in this scope 2023-09-20T04:02:35,492 65 | start= clock(); 2023-09-20T04:02:35,493 | ^~~~~ 2023-09-20T04:02:35,494 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obutil.h:40:1: note: ‘clock’ is defined in header ‘’; did you forget to ‘#include ’? 2023-09-20T04:02:35,495 39 | #include 2023-09-20T04:02:35,496 +++ |+#include 2023-09-20T04:02:35,497 40 | 2023-09-20T04:02:35,498 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obutil.h: In member function ‘double OpenBabel::OBStopwatch::Lap()’: 2023-09-20T04:02:35,499 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obutil.h:70:13: error: ‘clock’ was not declared in this scope 2023-09-20T04:02:35,500 70 | stop= clock(); 2023-09-20T04:02:35,501 | ^~~~~ 2023-09-20T04:02:35,502 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obutil.h:70:13: note: ‘clock’ is defined in header ‘’; did you forget to ‘#include ’? 2023-09-20T04:02:35,503 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obutil.h:71:40: error: ‘CLOCKS_PER_SEC’ was not declared in this scope 2023-09-20T04:02:35,504 71 | return((stop - start) / (double) CLOCKS_PER_SEC); 2023-09-20T04:02:35,505 | ^~~~~~~~~~~~~~ 2023-09-20T04:02:35,506 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obutil.h:71:40: note: the macro ‘CLOCKS_PER_SEC’ had not yet been defined 2023-09-20T04:02:35,507 In file included from /usr/include/time.h:33, 2023-09-20T04:02:35,507 from /usr/include/pthread.h:23, 2023-09-20T04:02:35,508 from /usr/include/arm-linux-gnueabihf/c++/12/bits/gthr-default.h:35, 2023-09-20T04:02:35,509 from /usr/include/arm-linux-gnueabihf/c++/12/bits/gthr.h:148, 2023-09-20T04:02:35,510 from /usr/include/c++/12/ext/atomicity.h:35, 2023-09-20T04:02:35,511 from /usr/include/c++/12/bits/ios_base.h:39, 2023-09-20T04:02:35,512 from /usr/include/c++/12/ios:42, 2023-09-20T04:02:35,513 from /usr/include/c++/12/istream:38, 2023-09-20T04:02:35,525 from /usr/include/c++/12/sstream:38, 2023-09-20T04:02:35,526 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/depict/painter.h:25, 2023-09-20T04:02:35,528 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/depict/asciipainter.h:21, 2023-09-20T04:02:35,529 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/depict/asciipainter.cpp:19: 2023-09-20T04:02:35,530 /usr/include/arm-linux-gnueabihf/bits/time.h:34: note: it was later defined here 2023-09-20T04:02:35,531 34 | #define CLOCKS_PER_SEC ((__clock_t) 1000000) 2023-09-20T04:02:35,532 | 2023-09-20T04:02:39,183 [131/533] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o 2023-09-20T04:02:39,184 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T04:02:39,185 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T04:02:39,186 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obmolecformat.h:36, 2023-09-20T04:02:39,187 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/formats/asciiformat.cpp:19: 2023-09-20T04:02:39,189 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:02:39,190 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:02:39,191 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:39,192 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:02:39,193 from /usr/include/c++/12/bits/locale_classes.h:40, 2023-09-20T04:02:39,194 from /usr/include/c++/12/bits/ios_base.h:41, 2023-09-20T04:02:39,195 from /usr/include/c++/12/ios:42, 2023-09-20T04:02:39,196 from /usr/include/c++/12/ostream:38, 2023-09-20T04:02:39,197 from /usr/include/c++/12/iostream:39, 2023-09-20T04:02:39,199 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:24: 2023-09-20T04:02:39,200 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:02:39,201 131 | struct binary_function 2023-09-20T04:02:39,202 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:39,364 [132/533] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o 2023-09-20T04:02:39,365 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/format.h:22, 2023-09-20T04:02:39,366 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/obconversion.h:37, 2023-09-20T04:02:39,367 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/formats/inchiformat.cpp:23: 2023-09-20T04:02:39,368 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:02:39,369 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:02:39,370 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:39,371 In file included from /usr/include/c++/12/bits/refwrap.h:39, 2023-09-20T04:02:39,372 from /usr/include/c++/12/vector:66, 2023-09-20T04:02:39,373 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/mol.h:44, 2023-09-20T04:02:39,374 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/formats/inchiformat.cpp:19: 2023-09-20T04:02:39,375 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:02:39,376 131 | struct binary_function 2023-09-20T04:02:39,377 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:39,378 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/formats/inchiformat.cpp:32: 2023-09-20T04:02:39,379 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/inchiformat.h:134:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:02:39,381 134 | : public std::binary_function 2023-09-20T04:02:39,382 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:39,383 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:02:39,384 131 | struct binary_function 2023-09-20T04:02:39,385 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:40,337 [133/533] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o 2023-09-20T04:02:40,338 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/chargemodel.h:24, 2023-09-20T04:02:40,339 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/eqeq.h:22, 2023-09-20T04:02:40,339 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/eqeq.cpp:21: 2023-09-20T04:02:40,340 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:02:40,341 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:02:40,342 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:40,343 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:02:40,344 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/dlhandler.h:24, 2023-09-20T04:02:40,345 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:23: 2023-09-20T04:02:40,345 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:02:40,346 131 | struct binary_function 2023-09-20T04:02:40,347 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:40,347 In file included from /usr/include/c++/12/vector:70, 2023-09-20T04:02:40,348 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/dlhandler.h:25: 2023-09-20T04:02:40,349 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T04:02:40,349 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:02:40,350 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:02:40,351 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:02:40,351 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:02:40,352 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:02:40,353 inlined from ‘virtual bool OpenBabel::EQEqCharges::ComputeCharges(OpenBabel::OBMol&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/eqeq.cpp:200:33: 2023-09-20T04:02:40,354 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:02:40,354 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:02:40,355 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:02:40,356 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:02:40,357 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:02:40,358 inlined from ‘virtual bool OpenBabel::EQEqCharges::ComputeCharges(OpenBabel::OBMol&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/eqeq.cpp:201:32: 2023-09-20T04:02:40,359 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:02:40,359 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:02:40,360 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:02:59,584 [134/533] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o 2023-09-20T04:02:59,585 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/chargemodel.h:24, 2023-09-20T04:02:59,585 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/qeq.h:22, 2023-09-20T04:02:59,586 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/qeq.cpp:21: 2023-09-20T04:02:59,587 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:02:59,588 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:02:59,588 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:59,589 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:02:59,589 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/dlhandler.h:24, 2023-09-20T04:02:59,590 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:23: 2023-09-20T04:02:59,590 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:02:59,591 131 | struct binary_function 2023-09-20T04:02:59,591 | ^~~~~~~~~~~~~~~ 2023-09-20T04:02:59,592 In file included from /usr/include/c++/12/vector:70, 2023-09-20T04:02:59,592 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/dlhandler.h:25: 2023-09-20T04:02:59,592 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2023-09-20T04:02:59,593 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-20T04:02:59,593 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:02:59,594 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:02:59,595 In file included from /usr/include/c++/12/vector:64: 2023-09-20T04:02:59,595 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2023-09-20T04:02:59,596 inlined from ‘void OpenBabel::QEqCharges::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/qeq.cpp:155:28: 2023-09-20T04:02:59,597 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:02:59,597 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:02:59,598 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:02:59,599 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T04:02:59,599 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:02:59,600 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:02:59,600 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:02:59,601 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T04:02:59,601 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:02:59,602 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:02:59,602 inlined from ‘virtual bool OpenBabel::QEqCharges::ComputeCharges(OpenBabel::OBMol&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/qeq.cpp:291:35: 2023-09-20T04:02:59,603 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:02:59,604 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:02:59,604 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:02:59,605 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:02:59,605 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:02:59,606 inlined from ‘virtual bool OpenBabel::QEqCharges::ComputeCharges(OpenBabel::OBMol&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/qeq.cpp:292:34: 2023-09-20T04:02:59,606 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:02:59,607 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:02:59,607 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:03:00,914 [135/533] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o 2023-09-20T04:03:00,915 In file included from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/chargemodel.h:24, 2023-09-20T04:03:00,916 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/qtpie.h:22, 2023-09-20T04:03:00,917 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/qtpie.cpp:21: 2023-09-20T04:03:00,918 /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 2023-09-20T04:03:00,919 41 | struct OBERROR CharPtrLess : public std::binary_function 2023-09-20T04:03:00,920 | ^~~~~~~~~~~~~~~ 2023-09-20T04:03:00,921 In file included from /usr/include/c++/12/string:48, 2023-09-20T04:03:00,922 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/dlhandler.h:24, 2023-09-20T04:03:00,923 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/plugin.h:23: 2023-09-20T04:03:00,924 /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 2023-09-20T04:03:00,925 131 | struct binary_function 2023-09-20T04:03:00,925 | ^~~~~~~~~~~~~~~ 2023-09-20T04:03:00,926 In file included from /usr/include/c++/12/vector:70, 2023-09-20T04:03:00,927 from /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/include/openbabel/dlhandler.h:25: 2023-09-20T04:03:00,927 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2023-09-20T04:03:00,928 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-20T04:03:00,929 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:03:00,930 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:03:00,931 In file included from /usr/include/c++/12/vector:64: 2023-09-20T04:03:00,932 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2023-09-20T04:03:00,934 inlined from ‘void OpenBabel::QTPIECharges::ParseParamFile()’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/qtpie.cpp:147:28: 2023-09-20T04:03:00,935 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2023-09-20T04:03:00,935 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:03:00,936 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:03:00,936 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T04:03:00,937 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:03:00,938 439 | vector<_Tp, _Alloc>:: 2023-09-20T04:03:00,939 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T04:03:00,939 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T04:03:00,940 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T04:03:00,941 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:03:00,942 inlined from ‘virtual bool OpenBabel::QTPIECharges::ComputeCharges(OpenBabel::OBMol&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/qtpie.cpp:336:35: 2023-09-20T04:03:00,942 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:03:00,943 1287 | _M_realloc_insert(end(), __x); 2023-09-20T04:03:00,944 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T04:03:00,945 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-20T04:03:00,946 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T04:03:00,947 inlined from ‘virtual bool OpenBabel::QTPIECharges::ComputeCharges(OpenBabel::OBMol&)’ at /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source/src/charges/qtpie.cpp:337:34: 2023-09-20T04:03:00,948 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T04:03:00,948 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T04:03:00,949 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T04:03:00,950 ninja: build stopped: subcommand failed. 2023-09-20T04:03:00,961 ==> Configuring: 2023-09-20T04:03:00,962 $ cmake -S /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/source -B /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/build/temp.linux-armv7l-cpython-311_OpenBabel -GNinja -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX:PATH=/tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/build/lib.linux-armv7l-cpython-311/openbabel -DCMAKE_MAKE_PROGRAM=/tmp/pip-build-env-x360gvss/overlay/local/bin/ninja -DPYTHON_EXECUTABLE=/usr/bin/python3 -DCMAKE_BUILD_TYPE=Release -DWITH_INCHI=ON -DPYTHON_BINDINGS=ON -DRUN_SWIG=ON -DPYTHON_INCLUDE_PATH=/usr/include/python3.11 -DPYTHON_INCLUDE_DIR=/usr/include/python3.11 -DBUILD_BY_PIP=ON 2023-09-20T04:03:00,964 ==> Building: 2023-09-20T04:03:00,964 $ cmake --build /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/build/temp.linux-armv7l-cpython-311_OpenBabel --config Release 2023-09-20T04:03:00,966 ==> Installing: 2023-09-20T04:03:00,966 $ cmake --install /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/build/temp.linux-armv7l-cpython-311_OpenBabel 2023-09-20T04:03:00,967 Traceback (most recent call last): 2023-09-20T04:03:00,968 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in 2023-09-20T04:03:00,968 main() 2023-09-20T04:03:00,969 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main 2023-09-20T04:03:00,969 json_out['return_val'] = hook(**hook_input['kwargs']) 2023-09-20T04:03:00,970 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-20T04:03:00,970 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 251, in build_wheel 2023-09-20T04:03:00,977 return _build_backend().build_wheel(wheel_directory, config_settings, 2023-09-20T04:03:00,978 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-20T04:03:00,979 File "/tmp/pip-build-env-x360gvss/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 434, in build_wheel 2023-09-20T04:03:00,979 return self._build_with_temp_dir( 2023-09-20T04:03:00,980 ^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-20T04:03:00,980 File "/tmp/pip-build-env-x360gvss/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 419, in _build_with_temp_dir 2023-09-20T04:03:00,981 self.run_setup() 2023-09-20T04:03:00,982 File "/tmp/pip-build-env-x360gvss/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 341, in run_setup 2023-09-20T04:03:00,982 exec(code, locals()) 2023-09-20T04:03:00,983 File "", line 16, in 2023-09-20T04:03:00,983 File "/tmp/pip-build-env-x360gvss/overlay/local/lib/python3.11/dist-packages/setuptools/__init__.py", line 103, in setup 2023-09-20T04:03:00,984 return distutils.core.setup(**attrs) 2023-09-20T04:03:00,985 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-20T04:03:00,985 File "/tmp/pip-build-env-x360gvss/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 185, in setup 2023-09-20T04:03:00,986 return run_commands(dist) 2023-09-20T04:03:00,987 ^^^^^^^^^^^^^^^^^^ 2023-09-20T04:03:00,987 File "/tmp/pip-build-env-x360gvss/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 201, in run_commands 2023-09-20T04:03:00,988 dist.run_commands() 2023-09-20T04:03:00,989 File "/tmp/pip-build-env-x360gvss/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 969, in run_commands 2023-09-20T04:03:00,990 self.run_command(cmd) 2023-09-20T04:03:00,991 File "/tmp/pip-build-env-x360gvss/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py", line 989, in run_command 2023-09-20T04:03:00,992 super().run_command(command) 2023-09-20T04:03:00,993 File "/tmp/pip-build-env-x360gvss/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command 2023-09-20T04:03:00,993 cmd_obj.run() 2023-09-20T04:03:00,994 File "/tmp/pip-build-env-x360gvss/overlay/local/lib/python3.11/dist-packages/wheel/bdist_wheel.py", line 364, in run 2023-09-20T04:03:00,995 self.run_command("build") 2023-09-20T04:03:00,996 File "/tmp/pip-build-env-x360gvss/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 318, in run_command 2023-09-20T04:03:00,997 self.distribution.run_command(command) 2023-09-20T04:03:00,998 File "/tmp/pip-build-env-x360gvss/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py", line 989, in run_command 2023-09-20T04:03:00,999 super().run_command(command) 2023-09-20T04:03:01,000 File "/tmp/pip-build-env-x360gvss/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command 2023-09-20T04:03:01,001 cmd_obj.run() 2023-09-20T04:03:01,002 File "/tmp/pip-build-env-x360gvss/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/command/build.py", line 131, in run 2023-09-20T04:03:01,003 self.run_command(cmd_name) 2023-09-20T04:03:01,003 File "/tmp/pip-build-env-x360gvss/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 318, in run_command 2023-09-20T04:03:01,004 self.distribution.run_command(command) 2023-09-20T04:03:01,005 File "/tmp/pip-build-env-x360gvss/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py", line 989, in run_command 2023-09-20T04:03:01,006 super().run_command(command) 2023-09-20T04:03:01,007 File "/tmp/pip-build-env-x360gvss/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command 2023-09-20T04:03:01,008 cmd_obj.run() 2023-09-20T04:03:01,009 File "/tmp/pip-build-env-x360gvss/overlay/local/lib/python3.11/dist-packages/cmake_build_extension/build_extension.py", line 113, in run 2023-09-20T04:03:01,009 self.build_extension(ext) 2023-09-20T04:03:01,010 File "/tmp/pip-build-env-x360gvss/overlay/local/lib/python3.11/dist-packages/cmake_build_extension/build_extension.py", line 230, in build_extension 2023-09-20T04:03:01,011 subprocess.check_call(build_command) 2023-09-20T04:03:01,012 File "/usr/lib/python3.11/subprocess.py", line 413, in check_call 2023-09-20T04:03:01,014 raise CalledProcessError(retcode, cmd) 2023-09-20T04:03:01,015 subprocess.CalledProcessError: Command '['cmake', '--build', '/tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651/build/temp.linux-armv7l-cpython-311_OpenBabel', '--config', 'Release']' returned non-zero exit status 1. 2023-09-20T04:03:01,158 ERROR: [present-rich] Building wheel for openbabel-wheel (pyproject.toml) exited with 1 2023-09-20T04:03:01,171 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmphwyijfrt[/] 2023-09-20T04:03:01,171 [bold magenta]cwd[/]: /tmp/pip-wheel-0gwi7bwb/openbabel-wheel_753e7771ca6b46e5a3ddbd81e2712651 2023-09-20T04:03:01,172 Building wheel for openbabel-wheel (pyproject.toml): finished with status 'error' 2023-09-20T04:03:01,175 ERROR: Failed building wheel for openbabel-wheel 2023-09-20T04:03:01,177 Failed to build openbabel-wheel 2023-09-20T04:03:01,178 ERROR: Failed to build one or more wheels 2023-09-20T04:03:01,180 Exception information: 2023-09-20T04:03:01,180 Traceback (most recent call last): 2023-09-20T04:03:01,180 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-20T04:03:01,180 status = run_func(*args) 2023-09-20T04:03:01,180 ^^^^^^^^^^^^^^^ 2023-09-20T04:03:01,180 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-20T04:03:01,180 return func(self, options, args) 2023-09-20T04:03:01,180 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-20T04:03:01,180 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-20T04:03:01,180 raise CommandError("Failed to build one or more wheels") 2023-09-20T04:03:01,180 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-20T04:03:01,184 Removed build tracker: '/tmp/pip-build-tracker-7lqluh_a'