2023-09-20T17:28:59,219 Created temporary directory: /tmp/pip-build-tracker-mzeadb43 2023-09-20T17:28:59,220 Initialized build tracking at /tmp/pip-build-tracker-mzeadb43 2023-09-20T17:28:59,221 Created build tracker: /tmp/pip-build-tracker-mzeadb43 2023-09-20T17:28:59,221 Entered build tracker: /tmp/pip-build-tracker-mzeadb43 2023-09-20T17:28:59,222 Created temporary directory: /tmp/pip-wheel-o7lsm4bm 2023-09-20T17:28:59,225 Created temporary directory: /tmp/pip-ephem-wheel-cache-hmvzu3uq 2023-09-20T17:28:59,247 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-20T17:28:59,250 2 location(s) to search for versions of whatshap: 2023-09-20T17:28:59,250 * https://pypi.org/simple/whatshap/ 2023-09-20T17:28:59,250 * https://www.piwheels.org/simple/whatshap/ 2023-09-20T17:28:59,251 Fetching project page and analyzing links: https://pypi.org/simple/whatshap/ 2023-09-20T17:28:59,252 Getting page https://pypi.org/simple/whatshap/ 2023-09-20T17:28:59,253 Found index url https://pypi.org/simple/ 2023-09-20T17:28:59,477 Fetched page https://pypi.org/simple/whatshap/ as application/vnd.pypi.simple.v1+json 2023-09-20T17:28:59,489 Found link https://files.pythonhosted.org/packages/35/95/43ff2304cd59ade39e64aadaeaec48e8c12bbe6262bcbbbd7b7d89487757/whatshap-0.9.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.9 2023-09-20T17:28:59,490 Found link https://files.pythonhosted.org/packages/f0/4b/f2b882803ac66b969414d8427ee8b4ca2c29b17cfead0fd85f349dc66983/whatshap-0.10.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.10 2023-09-20T17:28:59,490 Found link https://files.pythonhosted.org/packages/fc/dc/30559c28fb54985773fb242f5768fc206e054e44e45962a32cf4fd29a794/whatshap-0.11.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.11 2023-09-20T17:28:59,491 Found link https://files.pythonhosted.org/packages/01/84/31a5ea338647d0256a4a5c57e98d7a563f387e6a47f1e26299b89e3f2da1/whatshap-0.12.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.12 2023-09-20T17:28:59,491 Found link https://files.pythonhosted.org/packages/e2/f3/c71cb4bc3ba3b1234ee0c5fe729c60440164e07437695ca09c61750e0e11/whatshap-0.13.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.13 2023-09-20T17:28:59,492 Found link https://files.pythonhosted.org/packages/cd/d3/a63285d15b0da196a259197e46d9f61a852d1b3c94800f4a82ca4e31e307/whatshap-0.14.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.14 2023-09-20T17:28:59,493 Found link https://files.pythonhosted.org/packages/ec/d4/d6c19b716926895ee3def919ab23194212172ed5cf89ccb91c2949fb258d/whatshap-0.14.1.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.14.1 2023-09-20T17:28:59,494 Found link https://files.pythonhosted.org/packages/ca/13/6454e5e8f6c858a203378b3e22f13518f092ba85aa6d7a9a9796d22c28e0/whatshap-0.15.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.15 2023-09-20T17:28:59,495 Found link https://files.pythonhosted.org/packages/3d/cb/55730a8713ecba10f6d987dbd935ba31ded92f9af1ddd250896f3c1cfc3b/whatshap-0.16.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.16 2023-09-20T17:28:59,495 Found link https://files.pythonhosted.org/packages/79/11/79da12b8c23f43b00fab8a6206f75cc1cc8c1902ff30eca53c17abe2f633/whatshap-0.17.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.17 2023-09-20T17:28:59,496 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/97/19/5758de9357d2639e81f774dffd5227278df2df7f56e81f080098f00c8d5a/whatshap-0.18-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2023-09-20T17:28:59,497 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/d0/72/94dc654f66164a351a1a9540e28b4bdf34a81046fbf26b5955725bea2f64/whatshap-0.18-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2023-09-20T17:28:59,497 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/0a/50/c9c89e7f3a59251a91e618165ccc2586b626643a4c59dfd8d1b32f9b6bbb/whatshap-0.18-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2023-09-20T17:28:59,498 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/32/77/e9e6f3e15a89ea87b0a3ed50e99af2a375a897707eb8b4c81209af918ff0/whatshap-0.18-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2023-09-20T17:28:59,499 Found link https://files.pythonhosted.org/packages/f0/e4/4392c2f1320ea8d4b79a76e3a6dcb9bd7bf6ed70e11499c9acf2db2d42ef/whatshap-0.18.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4), version: 0.18 2023-09-20T17:28:59,500 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/0f/f5/78e5fa758144941f08b1de923889c7123e4d20368837904fc004592b6ec9/whatshap-1.0-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-09-20T17:28:59,500 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/42/cb/53a1a2a160846a225c6184da26e8f6d6577f5af378e3a90aab728bb5b504/whatshap-1.0-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-09-20T17:28:59,501 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/63/91/5aaa2ec02a362e784d7be43f43b1e243fa9153ef5d9ab3ada91759638444/whatshap-1.0-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-09-20T17:28:59,502 Found link https://files.pythonhosted.org/packages/c0/c8/98036e04fb95249128d6b49ca61691e1d8eea484dd94611f90efb5857174/whatshap-1.0.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.0 2023-09-20T17:28:59,502 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/8a/fb/dfaa97a9ec1fe333dcd730498376d33bc21de017760b633d8dd84f9cd9f6/whatshap-1.1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-09-20T17:28:59,503 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/37/4e/a06bd339ea7179e750d49fec27caba7a6b364f608b5126105770333a6dfa/whatshap-1.1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-09-20T17:28:59,503 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/2b/61/3000e39650a20faf011d74e41c3a6e3eea11195b1dad6cc8398665539363/whatshap-1.1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-09-20T17:28:59,504 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/37/1a/f9708037de73715099098762c13e8e0681129041d41fb0ab508004ed2aa7/whatshap-1.1-cp39-cp39-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-09-20T17:28:59,505 Found link https://files.pythonhosted.org/packages/94/69/20b124a032b37c73ac56708744cbf2542cbc3e31390f261853ca5a6f62fe/whatshap-1.1.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.1 2023-09-20T17:28:59,506 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/ce/5e/0c32569323ea5e7c036cd9344aa669d92e4a30bbcd4a00dda5483dad67a4/whatshap-1.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-09-20T17:28:59,507 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/c0/b0/0055bf0099361e24f02851b3df68d75e1165a7e13d8b6c4a5bbf1215f924/whatshap-1.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-09-20T17:28:59,507 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/43/09/3fe5c7130f5356b2b7b911539b52c090e2ee6532c14fc3f29fdbf6c2b569/whatshap-1.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-09-20T17:28:59,508 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/d1/af/55a5fe140b3a0491c7a19b961b8b6275573194827fb52c17908b2e2699b5/whatshap-1.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-09-20T17:28:59,509 Found link https://files.pythonhosted.org/packages/24/ba/a6b7ded0e342f0cdeb268e0e92b1c0812ca9c0804e11efc8c4e7e5cb6be9/whatshap-1.2.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.2 2023-09-20T17:28:59,509 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/19/36/1423d4adb6f4d7e58f5fdf8c59aaa8b5cec9d73bb5b2450f17f4089e8438/whatshap-1.2.1-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-09-20T17:28:59,510 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/3f/9c/52ce1b726a9b98f628c468b30877edc720c6c8022ae0d13fee6088f894b6/whatshap-1.2.1-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-09-20T17:28:59,510 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/22/c1/d7295d4b3732dc286990b85348401b3bf932bdcb196162f14100472683f3/whatshap-1.2.1-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-09-20T17:28:59,511 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/ff/36/181d416f2c1557879d2647e73964bd0d5d2fd3b79376ec3463435d2363ba/whatshap-1.2.1-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-09-20T17:28:59,512 Found link https://files.pythonhosted.org/packages/e1/e3/84376a94a15622efc336fe72ffb37d448b91abfe5fa21421684495e30eb9/whatshap-1.2.1.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.2.1 2023-09-20T17:28:59,513 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/34/c8/7365412dc082fc9b1a0415cde547086f44e0196148ec60ffdd49afc8ecf5/whatshap-1.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-09-20T17:28:59,513 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/76/52/dca5eac4abe3642ccf23b7dbbf4283589e4065c13f5bd9240e84c3227b4e/whatshap-1.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-09-20T17:28:59,514 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/08/df/825622346a1833f3b1fc5b89f613b711eb1003cb2a04986ad3016b22bae3/whatshap-1.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-09-20T17:28:59,514 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/36/4a/c1dc0eb7ebde0b5e5ad75d202f1c994399ca25bab7a31fe56da18185865f/whatshap-1.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-09-20T17:28:59,515 Found link https://files.pythonhosted.org/packages/14/ad/1e00006ef2a451b8487b267a6e6261472c3730ee9fbf9bf88ab3e33cdb3e/whatshap-1.3.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.3 2023-09-20T17:28:59,516 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/60/13/79e33b73a1b737584ad7e23c662a1b621c417813d0d8d81936fe0fe6608f/whatshap-1.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-09-20T17:28:59,516 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/5c/c5/96fe2f18f74aee649db37a25a583d01219c01dfae7b33af7df36f5eee414/whatshap-1.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-09-20T17:28:59,517 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/16/12/069f3e690d0af16ee52c63dcad13bfb35b8fbd9b03f56ea8682a8ed47bf6/whatshap-1.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-09-20T17:28:59,518 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/25/cf/3c12968b3e30141df2e518fe234bf38341db7474df5f890bd1c67664541f/whatshap-1.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-09-20T17:28:59,519 Found link https://files.pythonhosted.org/packages/15/1e/1b29e356fc0b8a1fbbffe808c02a67eae8ebd922a78567aa5eb867b47070/whatshap-1.4.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 1.4 2023-09-20T17:28:59,519 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/b6/5b/6e5b19bbab49bf45651cdf2eac3fe33a06d7959f65cfeba15dd08bae35e9/whatshap-1.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-09-20T17:28:59,520 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/14/cf/91e8519226ffc8d3459582832b7d0cdf4fda7b4c324deecfadce3f55be55/whatshap-1.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-09-20T17:28:59,520 Skipping link: No binaries permitted for whatshap: 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https://files.pythonhosted.org/packages/f8/76/4a671a933194f2ccbf2fc70513516312fae6054fbdbe69b250919082fa4c/whatshap-1.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-09-20T17:28:59,523 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/3f/86/778bbef5c06bdf48c738fdcd64c0a947398d78a168d1dfc949fc7665afa2/whatshap-1.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-09-20T17:28:59,524 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/9d/60/749fe7dcbb28f21abc3190a171443c8f78d7a20a1a1dfac592966fb55dc4/whatshap-1.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-09-20T17:28:59,524 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/cd/76/28f1ce30b1cf0a26eae2a508d057b78425595104780955b36e938ac7fcbe/whatshap-1.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-09-20T17:28:59,525 Found link https://files.pythonhosted.org/packages/e8/90/09feab715cafd8ca8bb664dc9dee9058a4db861adf50e0c1a4ebc86b07cc/whatshap-1.6.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 1.6 2023-09-20T17:28:59,526 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/63/0a/21389d1b959cd489c4a0abf1343e9bcff61d45af7de9470ffa350d2eeb4d/whatshap-1.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-09-20T17:28:59,527 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/e0/a3/dff518edaec7aa8efd2c7f1df8a494b7c4a0b49f7e6350c13228dee97351/whatshap-1.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-09-20T17:28:59,527 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/c1/34/785976fd423c187d90e2be419af906a366c038a57503e2e4fb6599aca868/whatshap-1.7-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-09-20T17:28:59,527 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/e1/81/8eaf7be1255b732643ce82307a72b015230b14842a15fc83b17bd264282d/whatshap-1.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-09-20T17:28:59,528 Found link https://files.pythonhosted.org/packages/1f/44/d11315edea202d6399af062186a30ba12a17c489115f56ed417e25921453/whatshap-1.7.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 1.7 2023-09-20T17:28:59,529 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/e2/4e/b4bf39415abe9944df3062b4e9c1c8ce901cae6ba1b3780d0a3c23c3e146/whatshap-2.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-09-20T17:28:59,529 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/28/4c/c2a9597d07eadbcf8427ec843cc784f572603292ee9bbb339fd79cea5075/whatshap-2.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-09-20T17:28:59,530 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/fa/f1/45172b5e64640fa04cdc3af57fc9848cf5d94d163dee6646a9aae67dfccb/whatshap-2.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-09-20T17:28:59,530 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/48/aa/31e1727bb7f7f770df8192d2aa096d988d0a4345e3842c89c32badedd7a9/whatshap-2.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-09-20T17:28:59,531 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/8e/5d/9af0551ffaa026d33b612a1bdfccdeabc4b93fd0af6313b57671aea0648a/whatshap-2.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-09-20T17:28:59,532 Found link https://files.pythonhosted.org/packages/c3/10/b53674fa02c1d5b23887f5a6b0fbf6936ce35dcd08f65e994c18601b20cb/whatshap-2.0.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 2.0 2023-09-20T17:28:59,533 Fetching project page and analyzing links: https://www.piwheels.org/simple/whatshap/ 2023-09-20T17:28:59,533 Getting page https://www.piwheels.org/simple/whatshap/ 2023-09-20T17:28:59,535 Found index url https://www.piwheels.org/simple/ 2023-09-20T17:28:59,816 Fetched page https://www.piwheels.org/simple/whatshap/ as text/html 2023-09-20T17:28:59,829 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp37-cp37m-linux_armv7l.whl#sha256=b81040280694883d7079a4b3e449bba14fc4d30f293e9a1d76a1e0578ac01cba (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2023-09-20T17:28:59,831 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp37-cp37m-linux_armv6l.whl#sha256=b81040280694883d7079a4b3e449bba14fc4d30f293e9a1d76a1e0578ac01cba (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2023-09-20T17:28:59,834 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp34-cp34m-linux_armv6l.whl#sha256=226c2159db0239fcad3b0d9731ae11ad7f161e18a0f51b5d76fbb7aa02bc5b12 (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2023-09-20T17:28:59,835 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp34-cp34m-linux_armv7l.whl#sha256=226c2159db0239fcad3b0d9731ae11ad7f161e18a0f51b5d76fbb7aa02bc5b12 (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2023-09-20T17:28:59,837 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp35-cp35m-linux_armv6l.whl#sha256=a01e2ba831e1062cac18678005ed864422821a147a90381d1d561db6daaa240b (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2023-09-20T17:28:59,839 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp35-cp35m-linux_armv7l.whl#sha256=a01e2ba831e1062cac18678005ed864422821a147a90381d1d561db6daaa240b (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2023-09-20T17:28:59,840 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp37-cp37m-linux_armv6l.whl#sha256=a52131a2cecf121ac6b1d8a2f3d6b6f81722f159121dddb88c43589f05db1c48 (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,842 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp37-cp37m-linux_armv7l.whl#sha256=a52131a2cecf121ac6b1d8a2f3d6b6f81722f159121dddb88c43589f05db1c48 (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,843 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp35-cp35m-linux_armv6l.whl#sha256=bcc411757fef61409f32f77b8b87266850cb245c80f7e55030a701e7e8f9aaf2 (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,843 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp35-cp35m-linux_armv7l.whl#sha256=bcc411757fef61409f32f77b8b87266850cb245c80f7e55030a701e7e8f9aaf2 (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,844 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp34-cp34m-linux_armv7l.whl#sha256=57ed4c07b260ca5103118fe34d7875af69bcda84b3267f3c8a96147f5475b355 (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,844 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp34-cp34m-linux_armv6l.whl#sha256=57ed4c07b260ca5103118fe34d7875af69bcda84b3267f3c8a96147f5475b355 (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,845 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp34-cp34m-linux_armv7l.whl#sha256=f220db8040faaacd90867ade6d504314e1412588bf15490cd43486b80012a5cb (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,845 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp34-cp34m-linux_armv6l.whl#sha256=f220db8040faaacd90867ade6d504314e1412588bf15490cd43486b80012a5cb (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,846 Skipping link: No binaries permitted for whatshap: 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https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,849 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp35-cp35m-linux_armv6l.whl#sha256=11a60ad9e4b9824b86108d6157dbb52400aaa31d739e08a8ccefaac8f79e4d3c (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,850 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp35-cp35m-linux_armv7l.whl#sha256=11a60ad9e4b9824b86108d6157dbb52400aaa31d739e08a8ccefaac8f79e4d3c (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,850 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp34-cp34m-linux_armv7l.whl#sha256=8a603d7a9a636e78f0f8297e9ad41b9b829dc8bb2bed01428406d595852b7bb8 (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,851 Skipping link: No binaries permitted for whatshap: 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(from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,854 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp35-cp35m-linux_armv7l.whl#sha256=d814d13967bc9b15f994573546cdeed83bac50694e44fb4105c3ae83bbfd97b7 (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,855 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp35-cp35m-linux_armv6l.whl#sha256=e0ac1dca2abae0b88b1fa764b4d4ca853bb6bc4b02de20b09e8d51448b20aafc (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,856 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp35-cp35m-linux_armv7l.whl#sha256=e0ac1dca2abae0b88b1fa764b4d4ca853bb6bc4b02de20b09e8d51448b20aafc (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,856 Skipping link: No binaries permitted for whatshap: 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https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,859 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp34-cp34m-linux_armv6l.whl#sha256=856ee3772161445e2245334076268dca61b504968b90dab43b07943ed6ddeebd (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,860 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp34-cp34m-linux_armv7l.whl#sha256=856ee3772161445e2245334076268dca61b504968b90dab43b07943ed6ddeebd (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,860 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp35-cp35m-linux_armv6l.whl#sha256=77398db6e7b93ab468c1a87e64d128696987ae7573bf6bb87d6d4ad6853c68cd (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,861 Skipping link: No binaries permitted for whatshap: 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https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,863 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp34-cp34m-linux_armv7l.whl#sha256=528f0411be5d1bd6559dd1531b52beb67ca918a09fd418fd2921199f88ff71ef (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,864 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp35-cp35m-linux_armv6l.whl#sha256=48a0027e08f6762e26e61673a253a95ecda25e8f32a31a8cbd3655365c25c051 (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,865 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp35-cp35m-linux_armv7l.whl#sha256=48a0027e08f6762e26e61673a253a95ecda25e8f32a31a8cbd3655365c25c051 (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,865 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.10-cp34-cp34m-linux_armv6l.whl#sha256=4833edfe84ef3c9eeb5c68262dad5be3a637379d59eae98ed10774ee66a5a925 (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,866 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.10-cp34-cp34m-linux_armv7l.whl#sha256=4833edfe84ef3c9eeb5c68262dad5be3a637379d59eae98ed10774ee66a5a925 (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,867 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp34-cp34m-linux_armv6l.whl#sha256=78adbda77e2ec4fe0f66ea86826ad8d025f743ba6bbf39d050783ec1cb07c83a (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,867 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp34-cp34m-linux_armv7l.whl#sha256=78adbda77e2ec4fe0f66ea86826ad8d025f743ba6bbf39d050783ec1cb07c83a (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,868 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp35-cp35m-linux_armv7l.whl#sha256=d3ebf8ce2fc15a5397ece9beb236c6e54c2653d414d727f48aae8e025b674a14 (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,869 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp35-cp35m-linux_armv6l.whl#sha256=d3ebf8ce2fc15a5397ece9beb236c6e54c2653d414d727f48aae8e025b674a14 (from https://www.piwheels.org/simple/whatshap/) 2023-09-20T17:28:59,870 Skipping link: not a file: https://www.piwheels.org/simple/whatshap/ 2023-09-20T17:28:59,870 Skipping link: not a file: https://pypi.org/simple/whatshap/ 2023-09-20T17:28:59,900 Given no hashes to check 1 links for project 'whatshap': discarding no candidates 2023-09-20T17:28:59,926 Collecting whatshap==1.7 2023-09-20T17:28:59,929 Created temporary directory: /tmp/pip-unpack-7ey3uwn8 2023-09-20T17:29:00,162 Downloading whatshap-1.7.tar.gz (5.4 MB) 2023-09-20T17:29:02,639 Added whatshap==1.7 from https://files.pythonhosted.org/packages/1f/44/d11315edea202d6399af062186a30ba12a17c489115f56ed417e25921453/whatshap-1.7.tar.gz to build tracker '/tmp/pip-build-tracker-mzeadb43' 2023-09-20T17:29:02,645 Created temporary directory: /tmp/pip-build-env-i6w7aimg 2023-09-20T17:29:02,650 Installing build dependencies: started 2023-09-20T17:29:02,651 Running command pip subprocess to install build dependencies 2023-09-20T17:29:03,827 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-20T17:29:04,305 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-20T17:29:05,966 Collecting setuptools>=60 2023-09-20T17:29:05,967 Obtaining dependency information for setuptools>=60 from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-20T17:29:05,973 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-20T17:29:06,264 Collecting setuptools_scm 2023-09-20T17:29:06,265 Obtaining dependency information for setuptools_scm from https://files.pythonhosted.org/packages/d4/73/ccf02298d1982cd27c30b3ada350d9952800a38b45bb0cbdb7c7b0110edc/setuptools_scm-8.0.1-py3-none-any.whl.metadata 2023-09-20T17:29:06,273 Using cached setuptools_scm-8.0.1-py3-none-any.whl.metadata (6.1 kB) 2023-09-20T17:29:07,763 Collecting cython~=0.29.20 2023-09-20T17:29:07,763 Obtaining dependency information for cython~=0.29.20 from https://files.pythonhosted.org/packages/3f/d6/9eed523aeaca42acbaa3e6d3850edae780dc7f8da9df1bf6a2ceb851839c/Cython-0.29.36-py2.py3-none-any.whl.metadata 2023-09-20T17:29:07,769 Using cached Cython-0.29.36-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-20T17:29:08,125 Collecting packaging>=20 (from setuptools_scm) 2023-09-20T17:29:08,143 Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB) 2023-09-20T17:29:08,180 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-20T17:29:08,202 Using cached setuptools_scm-8.0.1-py3-none-any.whl (40 kB) 2023-09-20T17:29:08,223 Using cached Cython-0.29.36-py2.py3-none-any.whl (988 kB) 2023-09-20T17:29:10,741 Installing collected packages: setuptools, packaging, cython, setuptools_scm 2023-09-20T17:29:15,578 Creating /tmp/pip-build-env-i6w7aimg/overlay/local/bin 2023-09-20T17:29:15,580 changing mode of /tmp/pip-build-env-i6w7aimg/overlay/local/bin/cygdb to 755 2023-09-20T17:29:15,582 changing mode of /tmp/pip-build-env-i6w7aimg/overlay/local/bin/cython to 755 2023-09-20T17:29:15,584 changing mode of /tmp/pip-build-env-i6w7aimg/overlay/local/bin/cythonize to 755 2023-09-20T17:29:15,798 Successfully installed cython-0.29.36 packaging-23.1 setuptools-68.2.2 setuptools_scm-8.0.1 2023-09-20T17:29:16,397 Installing build dependencies: finished with status 'done' 2023-09-20T17:29:16,400 Getting requirements to build wheel: started 2023-09-20T17:29:16,401 Running command Getting requirements to build wheel 2023-09-20T17:29:26,067 warning: whatshap/priorityqueue.pyx:201:7: Unreachable code 2023-09-20T17:29:27,855 Compiling whatshap/core.pyx because it depends on /tmp/pip-build-env-i6w7aimg/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd. 2023-09-20T17:29:27,855 Compiling whatshap/polyphase/solver.pyx because it depends on /tmp/pip-build-env-i6w7aimg/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd. 2023-09-20T17:29:27,856 Compiling whatshap/readselect.pyx because it depends on /tmp/pip-build-env-i6w7aimg/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd. 2023-09-20T17:29:27,857 Compiling whatshap/priorityqueue.pyx because it depends on /tmp/pip-build-env-i6w7aimg/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd. 2023-09-20T17:29:27,857 Compiling whatshap/align.pyx because it depends on /tmp/pip-build-env-i6w7aimg/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/__init__.pxd. 2023-09-20T17:29:27,858 [1/5] Cythonizing whatshap/align.pyx 2023-09-20T17:29:27,858 [2/5] Cythonizing whatshap/core.pyx 2023-09-20T17:29:27,859 [3/5] Cythonizing whatshap/polyphase/solver.pyx 2023-09-20T17:29:27,859 [4/5] Cythonizing whatshap/priorityqueue.pyx 2023-09-20T17:29:27,860 [5/5] Cythonizing whatshap/readselect.pyx 2023-09-20T17:29:27,962 ERROR setuptools_scm._integration.setuptools pyproject.toml does not contain a tool.setuptools_scm section 2023-09-20T17:29:27,962 Traceback (most recent call last): 2023-09-20T17:29:27,963 File "/tmp/pip-build-env-i6w7aimg/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/pyproject_reading.py", line 53, in read_pyproject 2023-09-20T17:29:27,963 section = defn.get("tool", {})[tool_name] 2023-09-20T17:29:27,964 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 2023-09-20T17:29:27,965 KeyError: 'setuptools_scm' 2023-09-20T17:29:27,966 The above exception was the direct cause of the following exception: 2023-09-20T17:29:27,967 Traceback (most recent call last): 2023-09-20T17:29:27,967 File "/tmp/pip-build-env-i6w7aimg/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/setuptools.py", line 121, in infer_version 2023-09-20T17:29:27,968 config = _config.Configuration.from_file(dist_name=dist_name) 2023-09-20T17:29:27,969 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-20T17:29:27,969 File "/tmp/pip-build-env-i6w7aimg/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_config.py", line 128, in from_file 2023-09-20T17:29:27,970 pyproject_data = _read_pyproject(name, _load_toml=_load_toml) 2023-09-20T17:29:27,970 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-20T17:29:27,971 File "/tmp/pip-build-env-i6w7aimg/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/pyproject_reading.py", line 55, in read_pyproject 2023-09-20T17:29:27,972 raise LookupError(f"{name} does not contain a tool.{tool_name} section") from e 2023-09-20T17:29:27,972 LookupError: pyproject.toml does not contain a tool.setuptools_scm section 2023-09-20T17:29:28,051 running egg_info 2023-09-20T17:29:28,057 writing whatshap.egg-info/PKG-INFO 2023-09-20T17:29:28,063 writing dependency_links to whatshap.egg-info/dependency_links.txt 2023-09-20T17:29:28,065 writing entry points to whatshap.egg-info/entry_points.txt 2023-09-20T17:29:28,068 writing requirements to whatshap.egg-info/requires.txt 2023-09-20T17:29:28,069 writing top-level names to whatshap.egg-info/top_level.txt 2023-09-20T17:29:28,121 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-09-20T17:29:28,124 reading manifest file 'whatshap.egg-info/SOURCES.txt' 2023-09-20T17:29:28,163 reading manifest template 'MANIFEST.in' 2023-09-20T17:29:28,173 adding license file 'LICENSE' 2023-09-20T17:29:28,188 writing manifest file 'whatshap.egg-info/SOURCES.txt' 2023-09-20T17:29:29,061 Getting requirements to build wheel: finished with status 'done' 2023-09-20T17:29:29,073 Installing backend dependencies: started 2023-09-20T17:29:29,074 Running command pip subprocess to install backend dependencies 2023-09-20T17:29:30,210 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-20T17:29:30,901 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-20T17:29:31,498 Collecting wheel 2023-09-20T17:29:31,516 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-20T17:29:33,725 Installing collected packages: wheel 2023-09-20T17:29:33,960 Creating /tmp/pip-build-env-i6w7aimg/normal/local/bin 2023-09-20T17:29:33,962 changing mode of /tmp/pip-build-env-i6w7aimg/normal/local/bin/wheel to 755 2023-09-20T17:29:33,974 Successfully installed wheel-0.41.2 2023-09-20T17:29:34,447 Installing backend dependencies: finished with status 'done' 2023-09-20T17:29:34,449 Created temporary directory: /tmp/pip-modern-metadata-1372i8zo 2023-09-20T17:29:34,451 Preparing metadata (pyproject.toml): started 2023-09-20T17:29:34,452 Running command Preparing metadata (pyproject.toml) 2023-09-20T17:29:35,651 ERROR setuptools_scm._integration.setuptools pyproject.toml does not contain a tool.setuptools_scm section 2023-09-20T17:29:35,651 Traceback (most recent call last): 2023-09-20T17:29:35,652 File "/tmp/pip-build-env-i6w7aimg/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/pyproject_reading.py", line 53, in read_pyproject 2023-09-20T17:29:35,652 section = defn.get("tool", {})[tool_name] 2023-09-20T17:29:35,653 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 2023-09-20T17:29:35,653 KeyError: 'setuptools_scm' 2023-09-20T17:29:35,654 The above exception was the direct cause of the following exception: 2023-09-20T17:29:35,656 Traceback (most recent call last): 2023-09-20T17:29:35,657 File "/tmp/pip-build-env-i6w7aimg/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/setuptools.py", line 121, in infer_version 2023-09-20T17:29:35,658 config = _config.Configuration.from_file(dist_name=dist_name) 2023-09-20T17:29:35,659 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-20T17:29:35,660 File "/tmp/pip-build-env-i6w7aimg/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_config.py", line 128, in from_file 2023-09-20T17:29:35,660 pyproject_data = _read_pyproject(name, _load_toml=_load_toml) 2023-09-20T17:29:35,661 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-20T17:29:35,661 File "/tmp/pip-build-env-i6w7aimg/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/pyproject_reading.py", line 55, in read_pyproject 2023-09-20T17:29:35,662 raise LookupError(f"{name} does not contain a tool.{tool_name} section") from e 2023-09-20T17:29:35,663 LookupError: pyproject.toml does not contain a tool.setuptools_scm section 2023-09-20T17:29:35,740 running dist_info 2023-09-20T17:29:35,760 creating /tmp/pip-modern-metadata-1372i8zo/whatshap.egg-info 2023-09-20T17:29:35,765 writing /tmp/pip-modern-metadata-1372i8zo/whatshap.egg-info/PKG-INFO 2023-09-20T17:29:35,771 writing dependency_links to /tmp/pip-modern-metadata-1372i8zo/whatshap.egg-info/dependency_links.txt 2023-09-20T17:29:35,774 writing entry points to /tmp/pip-modern-metadata-1372i8zo/whatshap.egg-info/entry_points.txt 2023-09-20T17:29:35,777 writing requirements to /tmp/pip-modern-metadata-1372i8zo/whatshap.egg-info/requires.txt 2023-09-20T17:29:35,778 writing top-level names to /tmp/pip-modern-metadata-1372i8zo/whatshap.egg-info/top_level.txt 2023-09-20T17:29:35,780 writing manifest file '/tmp/pip-modern-metadata-1372i8zo/whatshap.egg-info/SOURCES.txt' 2023-09-20T17:29:35,841 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-09-20T17:29:35,844 reading manifest file '/tmp/pip-modern-metadata-1372i8zo/whatshap.egg-info/SOURCES.txt' 2023-09-20T17:29:35,847 reading manifest template 'MANIFEST.in' 2023-09-20T17:29:35,864 adding license file 'LICENSE' 2023-09-20T17:29:35,871 writing manifest file '/tmp/pip-modern-metadata-1372i8zo/whatshap.egg-info/SOURCES.txt' 2023-09-20T17:29:35,872 creating '/tmp/pip-modern-metadata-1372i8zo/whatshap-1.7.dist-info' 2023-09-20T17:29:36,100 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-20T17:29:36,105 Source in /tmp/pip-wheel-o7lsm4bm/whatshap_fd0717541ea9404cbf376bedd1fc9d1c has version 1.7, which satisfies requirement whatshap==1.7 from https://files.pythonhosted.org/packages/1f/44/d11315edea202d6399af062186a30ba12a17c489115f56ed417e25921453/whatshap-1.7.tar.gz 2023-09-20T17:29:36,106 Removed whatshap==1.7 from https://files.pythonhosted.org/packages/1f/44/d11315edea202d6399af062186a30ba12a17c489115f56ed417e25921453/whatshap-1.7.tar.gz from build tracker '/tmp/pip-build-tracker-mzeadb43' 2023-09-20T17:29:36,111 Created temporary directory: /tmp/pip-unpack-j5wjf9gw 2023-09-20T17:29:36,112 Created temporary directory: /tmp/pip-unpack-2gax666g 2023-09-20T17:29:36,143 Building wheels for collected packages: whatshap 2023-09-20T17:29:36,147 Created temporary directory: /tmp/pip-wheel-e1y7q13l 2023-09-20T17:29:36,147 Destination directory: /tmp/pip-wheel-e1y7q13l 2023-09-20T17:29:36,150 Building wheel for whatshap (pyproject.toml): started 2023-09-20T17:29:36,151 Running command Building wheel for whatshap (pyproject.toml) 2023-09-20T17:29:37,286 ERROR setuptools_scm._integration.setuptools pyproject.toml does not contain a tool.setuptools_scm section 2023-09-20T17:29:37,286 Traceback (most recent call last): 2023-09-20T17:29:37,287 File "/tmp/pip-build-env-i6w7aimg/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/pyproject_reading.py", line 53, in read_pyproject 2023-09-20T17:29:37,287 section = defn.get("tool", {})[tool_name] 2023-09-20T17:29:37,288 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 2023-09-20T17:29:37,289 KeyError: 'setuptools_scm' 2023-09-20T17:29:37,290 The above exception was the direct cause of the following exception: 2023-09-20T17:29:37,292 Traceback (most recent call last): 2023-09-20T17:29:37,293 File "/tmp/pip-build-env-i6w7aimg/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/setuptools.py", line 121, in infer_version 2023-09-20T17:29:37,293 config = _config.Configuration.from_file(dist_name=dist_name) 2023-09-20T17:29:37,294 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-20T17:29:37,294 File "/tmp/pip-build-env-i6w7aimg/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_config.py", line 128, in from_file 2023-09-20T17:29:37,295 pyproject_data = _read_pyproject(name, _load_toml=_load_toml) 2023-09-20T17:29:37,296 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-20T17:29:37,296 File "/tmp/pip-build-env-i6w7aimg/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/pyproject_reading.py", line 55, in read_pyproject 2023-09-20T17:29:37,297 raise LookupError(f"{name} does not contain a tool.{tool_name} section") from e 2023-09-20T17:29:37,297 LookupError: pyproject.toml does not contain a tool.setuptools_scm section 2023-09-20T17:29:37,411 running bdist_wheel 2023-09-20T17:29:37,445 running build 2023-09-20T17:29:37,445 running build_py 2023-09-20T17:29:37,454 creating build 2023-09-20T17:29:37,455 creating build/lib.linux-armv7l-cpython-311 2023-09-20T17:29:37,455 creating build/lib.linux-armv7l-cpython-311/whatshap 2023-09-20T17:29:37,457 copying whatshap/verification.py -> build/lib.linux-armv7l-cpython-311/whatshap 2023-09-20T17:29:37,459 copying whatshap/args.py -> build/lib.linux-armv7l-cpython-311/whatshap 2023-09-20T17:29:37,460 copying whatshap/bam.py -> build/lib.linux-armv7l-cpython-311/whatshap 2023-09-20T17:29:37,462 copying whatshap/__init__.py -> build/lib.linux-armv7l-cpython-311/whatshap 2023-09-20T17:29:37,464 copying whatshap/pedigree.py -> build/lib.linux-armv7l-cpython-311/whatshap 2023-09-20T17:29:37,466 copying whatshap/__main__.py -> build/lib.linux-armv7l-cpython-311/whatshap 2023-09-20T17:29:37,467 copying whatshap/_version.py -> build/lib.linux-armv7l-cpython-311/whatshap 2023-09-20T17:29:37,469 copying whatshap/testhelpers.py -> build/lib.linux-armv7l-cpython-311/whatshap 2023-09-20T17:29:37,471 copying whatshap/variant.py -> build/lib.linux-armv7l-cpython-311/whatshap 2023-09-20T17:29:37,472 copying whatshap/utils.py -> build/lib.linux-armv7l-cpython-311/whatshap 2023-09-20T17:29:37,474 copying whatshap/vcf.py -> build/lib.linux-armv7l-cpython-311/whatshap 2023-09-20T17:29:37,477 copying whatshap/timer.py -> build/lib.linux-armv7l-cpython-311/whatshap 2023-09-20T17:29:37,479 copying whatshap/graph.py -> build/lib.linux-armv7l-cpython-311/whatshap 2023-09-20T17:29:37,480 copying whatshap/variants.py -> build/lib.linux-armv7l-cpython-311/whatshap 2023-09-20T17:29:37,483 copying whatshap/coverage.py -> build/lib.linux-armv7l-cpython-311/whatshap 2023-09-20T17:29:37,485 copying whatshap/merge.py -> build/lib.linux-armv7l-cpython-311/whatshap 2023-09-20T17:29:37,488 creating build/lib.linux-armv7l-cpython-311/whatshap/cli 2023-09-20T17:29:37,489 copying whatshap/cli/hapcut2vcf.py -> build/lib.linux-armv7l-cpython-311/whatshap/cli 2023-09-20T17:29:37,491 copying whatshap/cli/stats.py -> build/lib.linux-armv7l-cpython-311/whatshap/cli 2023-09-20T17:29:37,494 copying whatshap/cli/__init__.py -> build/lib.linux-armv7l-cpython-311/whatshap/cli 2023-09-20T17:29:37,496 copying whatshap/cli/find_snv_candidates.py -> build/lib.linux-armv7l-cpython-311/whatshap/cli 2023-09-20T17:29:37,498 copying whatshap/cli/genotype.py -> build/lib.linux-armv7l-cpython-311/whatshap/cli 2023-09-20T17:29:37,500 copying whatshap/cli/polyphasegenetic.py -> build/lib.linux-armv7l-cpython-311/whatshap/cli 2023-09-20T17:29:37,503 copying whatshap/cli/haplotag.py -> build/lib.linux-armv7l-cpython-311/whatshap/cli 2023-09-20T17:29:37,505 copying whatshap/cli/split.py -> build/lib.linux-armv7l-cpython-311/whatshap/cli 2023-09-20T17:29:37,508 copying whatshap/cli/polyphase.py -> build/lib.linux-armv7l-cpython-311/whatshap/cli 2023-09-20T17:29:37,510 copying whatshap/cli/unphase.py -> build/lib.linux-armv7l-cpython-311/whatshap/cli 2023-09-20T17:29:37,511 copying whatshap/cli/compare.py -> build/lib.linux-armv7l-cpython-311/whatshap/cli 2023-09-20T17:29:37,514 copying whatshap/cli/phase.py -> build/lib.linux-armv7l-cpython-311/whatshap/cli 2023-09-20T17:29:37,518 creating build/lib.linux-armv7l-cpython-311/whatshap/polyphase 2023-09-20T17:29:37,519 copying whatshap/polyphase/variantselection.py -> build/lib.linux-armv7l-cpython-311/whatshap/polyphase 2023-09-20T17:29:37,521 copying whatshap/polyphase/algorithm.py -> build/lib.linux-armv7l-cpython-311/whatshap/polyphase 2023-09-20T17:29:37,523 copying whatshap/polyphase/__init__.py -> build/lib.linux-armv7l-cpython-311/whatshap/polyphase 2023-09-20T17:29:37,525 copying whatshap/polyphase/threading.py -> build/lib.linux-armv7l-cpython-311/whatshap/polyphase 2023-09-20T17:29:37,527 copying whatshap/polyphase/offspringscoring.py -> build/lib.linux-armv7l-cpython-311/whatshap/polyphase 2023-09-20T17:29:37,530 copying whatshap/polyphase/clusterarrangement.py -> build/lib.linux-armv7l-cpython-311/whatshap/polyphase 2023-09-20T17:29:37,531 copying whatshap/polyphase/reorder.py -> build/lib.linux-armv7l-cpython-311/whatshap/polyphase 2023-09-20T17:29:37,533 copying whatshap/polyphase/plots.py -> build/lib.linux-armv7l-cpython-311/whatshap/polyphase 2023-09-20T17:29:37,539 running build_ext 2023-09-20T17:29:37,544 building 'whatshap.core' extension 2023-09-20T17:29:37,545 creating build/temp.linux-armv7l-cpython-311 2023-09-20T17:29:37,545 creating build/temp.linux-armv7l-cpython-311/src 2023-09-20T17:29:37,547 creating build/temp.linux-armv7l-cpython-311/src/hapchat 2023-09-20T17:29:37,548 creating build/temp.linux-armv7l-cpython-311/whatshap 2023-09-20T17:29:37,548 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/backwardcolumniterator.cpp -o build/temp.linux-armv7l-cpython-311/src/backwardcolumniterator.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:29:39,406 In file included from /usr/include/c++/12/cassert:44, 2023-09-20T17:29:39,407 from src/backwardcolumniterator.cpp:1: 2023-09-20T17:29:39,408 src/backwardcolumniterator.cpp: In member function ‘void BackwardColumnIterator::jump_to_column(int)’: 2023-09-20T17:29:39,408 src/backwardcolumniterator.cpp:121:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-20T17:29:39,409 121 | assert(k < positions->size()); 2023-09-20T17:29:39,409 | ~~^~~~~~~~~~~~~~~~~~~ 2023-09-20T17:29:39,410 src/backwardcolumniterator.cpp:140:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-20T17:29:39,411 140 | assert(active_entry < read->getVariantCount()); 2023-09-20T17:29:39,411 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T17:29:41,185 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/binomial.cpp -o build/temp.linux-armv7l-cpython-311/src/binomial.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:29:41,507 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/columnindexingiterator.cpp -o build/temp.linux-armv7l-cpython-311/src/columnindexingiterator.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:29:42,782 src/columnindexingiterator.cpp: In member function ‘unsigned int ColumnIndexingIterator::index_forward_projection(unsigned int)’: 2023-09-20T17:29:42,782 src/columnindexingiterator.cpp:90:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-20T17:29:42,783 90 | for(int j=0; j< parent->read_ids.size(); ++j) { 2023-09-20T17:29:42,784 | ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T17:29:42,784 src/columnindexingiterator.cpp:92:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-20T17:29:42,785 92 | if(m != -1) { 2023-09-20T17:29:42,785 | ~~^~~~~ 2023-09-20T17:29:42,786 src/columnindexingiterator.cpp:89:22: warning: unused variable ‘s’ [-Wunused-variable] 2023-09-20T17:29:42,787 89 | unsigned int s = 1; 2023-09-20T17:29:42,787 | ^ 2023-09-20T17:29:43,099 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/columnindexingscheme.cpp -o build/temp.linux-armv7l-cpython-311/src/columnindexingscheme.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:29:44,364 src/columnindexingscheme.cpp: In constructor ‘ColumnIndexingScheme::ColumnIndexingScheme(const ColumnIndexingScheme*, const std::vector&)’: 2023-09-20T17:29:44,365 src/columnindexingscheme.cpp:22:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-20T17:29:44,366 22 | while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-20T17:29:44,367 22 | while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-20T17:29:44,371 71 | while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-20T17:29:44,373 71 | while ((iread_ids.size()) && (j > ColumnIterator::get_next()’: 2023-09-20T17:29:46,752 src/columniterator.cpp:105:54: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-20T17:29:46,753 105 | assert(list_it->active_entry < read->getVariantCount()); 2023-09-20T17:29:46,754 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T17:29:46,769 src/columniterator.cpp: In member function ‘void ColumnIterator::jump_to_column(size_t)’: 2023-09-20T17:29:46,770 src/columniterator.cpp:161:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-20T17:29:46,771 161 | assert(active_entry < read->getVariantCount()); 2023-09-20T17:29:46,771 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T17:29:48,608 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/entry.cpp -o build/temp.linux-armv7l-cpython-311/src/entry.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:29:49,751 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/genotype.cpp -o build/temp.linux-armv7l-cpython-311/src/genotype.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:29:52,365 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/genotypecolumncostcomputer.cpp -o build/temp.linux-armv7l-cpython-311/src/genotypecolumncostcomputer.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:29:55,618 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/genotypedistribution.cpp -o build/temp.linux-armv7l-cpython-311/src/genotypedistribution.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:29:56,995 src/genotypedistribution.cpp: In member function ‘double GenotypeDistribution::errorProbability() const’: 2023-09-20T17:29:56,995 src/genotypedistribution.cpp:55:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-20T17:29:56,996 55 | if (i == best_index) continue; 2023-09-20T17:29:56,997 | ~~^~~~~~~~~~~~~ 2023-09-20T17:29:57,549 In file included from /usr/include/c++/12/vector:70, 2023-09-20T17:29:57,550 from src/genotypedistribution.h:4, 2023-09-20T17:29:57,551 from src/genotypedistribution.cpp:5: 2023-09-20T17:29:57,552 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-20T17:29:57,553 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T17:29:57,553 439 | vector<_Tp, _Alloc>:: 2023-09-20T17:29:57,554 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T17:29:57,588 In file included from /usr/include/c++/12/vector:64: 2023-09-20T17:29:57,589 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T17:29:57,589 inlined from ‘GenotypeDistribution::GenotypeDistribution(double, double, double)’ at src/genotypedistribution.cpp:10:24: 2023-09-20T17:29:57,590 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T17:29:57,591 1287 | _M_realloc_insert(end(), __x); 2023-09-20T17:29:57,591 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T17:29:57,592 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T17:29:57,593 inlined from ‘GenotypeDistribution::GenotypeDistribution(double, double, double)’ at src/genotypedistribution.cpp:11:24: 2023-09-20T17:29:57,594 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T17:29:57,594 1287 | _M_realloc_insert(end(), __x); 2023-09-20T17:29:57,595 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T17:29:57,596 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-20T17:29:57,597 inlined from ‘GenotypeDistribution::GenotypeDistribution(double, double, double)’ at src/genotypedistribution.cpp:12:24: 2023-09-20T17:29:57,598 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T17:29:57,599 1287 | _M_realloc_insert(end(), __x); 2023-09-20T17:29:57,599 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T17:29:57,756 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/genotypedptable.cpp -o build/temp.linux-armv7l-cpython-311/src/genotypedptable.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:30:00,252 In file included from src/genotypedptable.cpp:11: 2023-09-20T17:30:00,253 src/genotypedptable.h: In member function ‘void GenotypeDPTable::genotype_likelihood_t::divide_likelihoods_by(long double&)’: 2023-09-20T17:30:00,254 src/genotypedptable.h:38:95: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = divides; _Tp = long double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-20T17:30:00,254 38 | std::transform(likelihoods.begin(), likelihoods.end(), likelihoods.begin(), std::bind2nd(std::divides(), val)); 2023-09-20T17:30:00,255 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T17:30:00,255 In file included from /usr/include/c++/12/bits/stl_function.h:1438, 2023-09-20T17:30:00,256 from /usr/include/c++/12/string:48, 2023-09-20T17:30:00,257 from /usr/include/c++/12/stdexcept:39, 2023-09-20T17:30:00,258 from src/genotypedptable.cpp:1: 2023-09-20T17:30:00,258 /usr/include/c++/12/backward/binders.h:172:5: note: declared here 2023-09-20T17:30:00,259 172 | bind2nd(const _Operation& __fn, const _Tp& __x) 2023-09-20T17:30:00,260 | ^~~~~~~ 2023-09-20T17:30:00,280 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::clear_forward_table()’: 2023-09-20T17:30:00,280 src/genotypedptable.cpp:61:12: warning: unused variable ‘column_count’ [-Wunused-variable] 2023-09-20T17:30:00,281 61 | size_t column_count = input_column_iterator.get_column_count(); 2023-09-20T17:30:00,282 | ^~~~~~~~~~~~ 2023-09-20T17:30:00,328 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_index()’: 2023-09-20T17:30:00,329 src/genotypedptable.cpp:91:18: warning: unused variable ‘transmission_configurations’ [-Wunused-variable] 2023-09-20T17:30:00,329 91 | unsigned int transmission_configurations = pow(4, pedigree->triple_count()); 2023-09-20T17:30:00,330 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T17:30:00,333 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_backward_prob()’: 2023-09-20T17:30:00,334 src/genotypedptable.cpp:152:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-20T17:30:00,334 152 | if ((k>1) && (column_index < column_count-1) && (((column_index+1)%k) != 0)) { 2023-09-20T17:30:00,335 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2023-09-20T17:30:00,337 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_forward_prob()’: 2023-09-20T17:30:00,338 src/genotypedptable.cpp:178:12: warning: unused variable ‘k’ [-Wunused-variable] 2023-09-20T17:30:00,339 178 | size_t k = (size_t)sqrt(input_column_iterator.get_column_count()); 2023-09-20T17:30:00,340 | ^ 2023-09-20T17:30:00,509 In file included from src/genotypedptable.h:15: 2023-09-20T17:30:00,510 src/vector2d.h: In instantiation of ‘void Vector2D::divide_entries_by(T) [with T = long double]’: 2023-09-20T17:30:00,510 src/genotypedptable.cpp:290:53: required from here 2023-09-20T17:30:00,511 src/vector2d.h:40:28: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = divides; _Tp = long double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-20T17:30:00,512 40 | std::bind2nd(std::divides(),val)); 2023-09-20T17:30:00,513 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T17:30:00,513 /usr/include/c++/12/backward/binders.h:172:5: note: declared here 2023-09-20T17:30:00,514 172 | bind2nd(const _Operation& __fn, const _Tp& __x) 2023-09-20T17:30:00,514 | ^~~~~~~ 2023-09-20T17:30:04,709 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/genotyper.cpp -o build/temp.linux-armv7l-cpython-311/src/genotyper.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:30:10,050 In file included from /usr/include/c++/12/vector:70, 2023-09-20T17:30:10,050 from src/columniterator.h:4, 2023-09-20T17:30:10,051 from src/genotyper.cpp:6: 2023-09-20T17:30:10,051 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Genotype&}; _Tp = Genotype; _Alloc = std::allocator]’: 2023-09-20T17:30:10,052 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T17:30:10,052 439 | vector<_Tp, _Alloc>:: 2023-09-20T17:30:10,053 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T17:30:10,279 In file included from /usr/include/c++/12/vector:64: 2023-09-20T17:30:10,280 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Genotype; _Alloc = std::allocator]’, 2023-09-20T17:30:10,281 inlined from ‘void compute_genotypes(const ReadSet&, std::vector*, std::vector*, std::vector*)’ at src/genotyper.cpp:48:23: 2023-09-20T17:30:10,281 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T17:30:10,282 1287 | _M_realloc_insert(end(), __x); 2023-09-20T17:30:10,283 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-20T17:30:10,617 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/graycodes.cpp -o build/temp.linux-armv7l-cpython-311/src/graycodes.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:30:11,798 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/hapchat/balancedcombinations.cpp -o build/temp.linux-armv7l-cpython-311/src/hapchat/balancedcombinations.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:30:16,142 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/hapchat/basictypes.cpp -o build/temp.linux-armv7l-cpython-311/src/hapchat/basictypes.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:30:18,578 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/hapchat/binomialcoefficient.cpp -o build/temp.linux-armv7l-cpython-311/src/hapchat/binomialcoefficient.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:30:21,480 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/hapchat/hapchatcolumniterator.cpp -o build/temp.linux-armv7l-cpython-311/src/hapchat/hapchatcolumniterator.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:30:24,080 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/hapchat/hapchatcore.cpp -o build/temp.linux-armv7l-cpython-311/src/hapchat/hapchatcore.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:30:26,727 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::run_core()’: 2023-09-20T17:30:26,728 src/hapchat/hapchatcore.cpp:145:11: warning: variable ‘counter_columns’ set but not used [-Wunused-but-set-variable] 2023-09-20T17:30:26,729 145 | Counter counter_columns; 2023-09-20T17:30:26,730 | ^~~~~~~~~~~~~~~ 2023-09-20T17:30:26,745 src/hapchat/hapchatcore.cpp: In member function ‘bool HapChatCore::check_end(HapChatColumnIterator, const std::vector >&, const Pointer&, const bool&)’: 2023-09-20T17:30:26,745 src/hapchat/hapchatcore.cpp:208:74: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-20T17:30:26,746 208 | return (!re_run && (hap.is_ended() && (input[pointer][0].get_read_id() == -1))); 2023-09-20T17:30:26,747 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-09-20T17:30:26,898 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::dp(const constants_t&, std::vector&, std::vector&, Counter&, Cost&, Counter&, Counter&, Counter&, Counter&, HapChatColumnIterator)’: 2023-09-20T17:30:26,899 src/hapchat/hapchatcore.cpp:939:15: warning: unused variable ‘old_k’ [-Wunused-variable] 2023-09-20T17:30:26,900 939 | int old_k = k_j[input_pointer]; 2023-09-20T17:30:26,900 | ^~~~~ 2023-09-20T17:30:26,919 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::intersect(const Column&, const Column&, const Pointer&, std::vector >&, std::vector >&, std::vector >&, std::vector&, const bool&)’: 2023-09-20T17:30:26,920 src/hapchat/hapchatcore.cpp:1114:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-20T17:30:26,921 1114 | (colJ[j].get_read_id() != -1) && 2023-09-20T17:30:26,922 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-09-20T17:30:26,922 src/hapchat/hapchatcore.cpp:1115:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-20T17:30:26,923 1115 | (colQ[i].get_read_id() != -1)) { 2023-09-20T17:30:26,924 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-09-20T17:30:26,925 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::represent_column(const Column&, BitColumn&, Counter&, BitColumn&, Counter&)’: 2023-09-20T17:30:26,925 src/hapchat/hapchatcore.cpp:1159:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-20T17:30:26,926 1159 | while(cov < column.size() && column[cov].get_read_id() != -1) { 2023-09-20T17:30:26,927 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-09-20T17:30:26,930 src/hapchat/hapchatcore.cpp: In member function ‘int HapChatCore::compute_active_common(const Column&, const Column&, unsigned int&)’: 2023-09-20T17:30:26,931 src/hapchat/hapchatcore.cpp:1294:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-20T17:30:26,931 1294 | (colJ[j].get_read_id() != -1) && 2023-09-20T17:30:26,932 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-09-20T17:30:26,934 src/hapchat/hapchatcore.cpp:1295:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-20T17:30:26,935 1295 | (colQ[i].get_read_id() != -1)) { 2023-09-20T17:30:26,935 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-09-20T17:30:26,936 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::insert_col_and_update(std::vector >&, std::vector&, std::vector&, std::vector&, const Pointer&, const Column&, std::vector&, const Counter&)’: 2023-09-20T17:30:26,937 src/hapchat/hapchatcore.cpp:1350:67: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-20T17:30:26,937 1350 | if(i < input[pointer].size() && input[pointer][i].get_read_id() != -1) 2023-09-20T17:30:26,938 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-09-20T17:30:28,045 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/indexset.cpp -o build/temp.linux-armv7l-cpython-311/src/indexset.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:30:29,852 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/multinomial.cpp -o build/temp.linux-armv7l-cpython-311/src/multinomial.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:30:31,213 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/pedigree.cpp -o build/temp.linux-armv7l-cpython-311/src/pedigree.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:30:32,837 In file included from /usr/include/c++/12/cassert:44, 2023-09-20T17:30:32,837 from src/pedigree.cpp:4: 2023-09-20T17:30:32,838 src/pedigree.cpp: In member function ‘void Pedigree::addIndividual(unsigned int, std::vector, std::vector)’: 2023-09-20T17:30:32,839 src/pedigree.cpp:32:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-20T17:30:32,839 32 | assert(genotypes.size() == variant_count); 2023-09-20T17:30:32,840 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2023-09-20T17:30:32,841 src/pedigree.cpp:33:44: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-20T17:30:32,841 33 | assert(genotype_likelihoods.size() == variant_count); 2023-09-20T17:30:32,842 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2023-09-20T17:30:32,859 src/pedigree.cpp: In member function ‘const Genotype* Pedigree::get_genotype_by_id(unsigned int, unsigned int) const’: 2023-09-20T17:30:32,860 src/pedigree.cpp:70:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2023-09-20T17:30:32,860 70 | assert(variant_index < variant_count); 2023-09-20T17:30:32,861 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-20T17:30:32,862 src/pedigree.cpp: In member function ‘const PhredGenotypeLikelihoods* Pedigree::get_genotype_likelihoods_by_id(unsigned int, unsigned int) const’: 2023-09-20T17:30:32,863 src/pedigree.cpp:81:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2023-09-20T17:30:32,864 81 | assert(variant_index < variant_count); 2023-09-20T17:30:32,865 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-20T17:30:32,873 src/pedigree.cpp: In member function ‘std::string Pedigree::toString() const’: 2023-09-20T17:30:32,873 src/pedigree.cpp:112:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2023-09-20T17:30:32,874 112 | for (size_t j=0; j&, size_t, const std::vector&, const Pedigree*, const PedigreePartitions&, bool)’: 2023-09-20T17:30:37,419 src/pedigreecolumncostcomputer.cpp:25:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-20T17:30:37,420 25 | for (unsigned int i = 0; i < (1< PedigreeColumnCostComputer::get_alleles()’: 2023-09-20T17:30:37,461 src/pedigreecolumncostcomputer.cpp:119:22: warning: unused variable ‘second_best_cost’ [-Wunused-variable] 2023-09-20T17:30:37,461 119 | unsigned int second_best_cost = numeric_limits < unsigned int >::max(); 2023-09-20T17:30:37,462 | ^~~~~~~~~~~~~~~~ 2023-09-20T17:30:38,695 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/pedigreedptable.cpp -o build/temp.linux-armv7l-cpython-311/src/pedigreedptable.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:30:45,659 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/pedigreepartitions.cpp -o build/temp.linux-armv7l-cpython-311/src/pedigreepartitions.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:30:47,806 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/phredgenotypelikelihoods.cpp -o build/temp.linux-armv7l-cpython-311/src/phredgenotypelikelihoods.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:30:49,616 In file included from /usr/include/c++/12/vector:70, 2023-09-20T17:30:49,617 from src/genotype.h:4, 2023-09-20T17:30:49,618 from src/phredgenotypelikelihoods.h:5, 2023-09-20T17:30:49,618 from src/phredgenotypelikelihoods.cpp:4: 2023-09-20T17:30:49,619 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Genotype}; _Tp = Genotype; _Alloc = std::allocator]’: 2023-09-20T17:30:49,619 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-20T17:30:49,620 439 | vector<_Tp, _Alloc>:: 2023-09-20T17:30:49,621 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T17:30:49,651 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Genotype}; _Tp = Genotype; _Alloc = std::allocator]’, 2023-09-20T17:30:49,652 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Genotype; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-20T17:30:49,652 inlined from ‘void PhredGenotypeLikelihoods::get_genotypes(std::vector&) const’ at src/phredgenotypelikelihoods.cpp:53:22: 2023-09-20T17:30:49,653 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-20T17:30:49,654 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T17:30:49,654 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T17:30:49,810 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/read.cpp -o build/temp.linux-armv7l-cpython-311/src/read.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:30:53,209 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/readset.cpp -o build/temp.linux-armv7l-cpython-311/src/readset.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:30:58,249 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c src/transitionprobabilitycomputer.cpp -o build/temp.linux-armv7l-cpython-311/src/transitionprobabilitycomputer.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:31:01,188 In file included from /usr/include/c++/12/vector:70, 2023-09-20T17:31:01,189 from src/vector2d.h:5, 2023-09-20T17:31:01,190 from src/transitionprobabilitycomputer.h:5, 2023-09-20T17:31:01,191 from src/transitionprobabilitycomputer.cpp:1: 2023-09-20T17:31:01,191 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long double}; _Tp = long double; _Alloc = std::allocator]’: 2023-09-20T17:31:01,192 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-20T17:31:01,192 439 | vector<_Tp, _Alloc>:: 2023-09-20T17:31:01,193 | ^~~~~~~~~~~~~~~~~~~ 2023-09-20T17:31:01,784 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long double}; _Tp = long double; _Alloc = std::allocator]’, 2023-09-20T17:31:01,785 inlined from ‘TransitionProbabilityComputer::TransitionProbabilityComputer(size_t, unsigned int, const Pedigree*, const std::vector&)’ at src/transitionprobabilitycomputer.cpp:25:29: 2023-09-20T17:31:01,785 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-20T17:31:01,786 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-20T17:31:01,787 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T17:31:02,632 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.11 -c whatshap/core.cpp -o build/temp.linux-armv7l-cpython-311/whatshap/core.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-09-20T17:31:06,829 In file included from whatshap/core.cpp:845: 2023-09-20T17:31:06,829 src/genotypedptable.h: In member function ‘void GenotypeDPTable::genotype_likelihood_t::divide_likelihoods_by(long double&)’: 2023-09-20T17:31:06,829 src/genotypedptable.h:38:95: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = divides; _Tp = long double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2023-09-20T17:31:06,830 38 | std::transform(likelihoods.begin(), likelihoods.end(), likelihoods.begin(), std::bind2nd(std::divides(), val)); 2023-09-20T17:31:06,830 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-20T17:31:06,831 In file included from /usr/include/c++/12/bits/stl_function.h:1438, 2023-09-20T17:31:06,832 from /usr/include/c++/12/string:48, 2023-09-20T17:31:06,832 from whatshap/core.cpp:818: 2023-09-20T17:31:06,833 /usr/include/c++/12/backward/binders.h:172:5: note: declared here 2023-09-20T17:31:06,833 172 | bind2nd(const _Operation& __fn, const _Tp& __x) 2023-09-20T17:31:06,834 | ^~~~~~~ 2023-09-20T17:31:07,194 In file included from whatshap/core.cpp:849: 2023-09-20T17:31:07,195 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::run_core()’: 2023-09-20T17:31:07,196 src/hapchat/hapchatcore.cpp:145:11: warning: variable ‘counter_columns’ set but not used [-Wunused-but-set-variable] 2023-09-20T17:31:07,196 145 | Counter counter_columns; 2023-09-20T17:31:07,197 | ^~~~~~~~~~~~~~~ 2023-09-20T17:31:07,206 src/hapchat/hapchatcore.cpp: In member function ‘bool HapChatCore::check_end(HapChatColumnIterator, const std::vector >&, const Pointer&, const bool&)’: 2023-09-20T17:31:07,207 src/hapchat/hapchatcore.cpp:208:74: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-20T17:31:07,207 208 | return (!re_run && (hap.is_ended() && (input[pointer][0].get_read_id() == -1))); 2023-09-20T17:31:07,208 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-09-20T17:31:07,365 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::dp(const constants_t&, std::vector&, std::vector&, Counter&, Cost&, Counter&, Counter&, Counter&, Counter&, HapChatColumnIterator)’: 2023-09-20T17:31:07,365 src/hapchat/hapchatcore.cpp:939:15: warning: unused variable ‘old_k’ [-Wunused-variable] 2023-09-20T17:31:07,366 939 | int old_k = k_j[input_pointer]; 2023-09-20T17:31:07,367 | ^~~~~ 2023-09-20T17:31:07,385 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::intersect(const Column&, const Column&, const Pointer&, std::vector >&, std::vector >&, std::vector >&, std::vector&, const bool&)’: 2023-09-20T17:31:07,386 src/hapchat/hapchatcore.cpp:1114:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-20T17:31:07,387 1114 | (colJ[j].get_read_id() != -1) && 2023-09-20T17:31:07,387 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-09-20T17:31:07,388 src/hapchat/hapchatcore.cpp:1115:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-20T17:31:07,389 1115 | (colQ[i].get_read_id() != -1)) { 2023-09-20T17:31:07,389 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-09-20T17:31:07,390 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::represent_column(const Column&, BitColumn&, Counter&, BitColumn&, Counter&)’: 2023-09-20T17:31:07,391 src/hapchat/hapchatcore.cpp:1159:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-20T17:31:07,392 1159 | while(cov < column.size() && column[cov].get_read_id() != -1) { 2023-09-20T17:31:07,392 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-09-20T17:31:07,396 src/hapchat/hapchatcore.cpp: In member function ‘int HapChatCore::compute_active_common(const Column&, const Column&, unsigned int&)’: 2023-09-20T17:31:07,397 src/hapchat/hapchatcore.cpp:1294:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-20T17:31:07,397 1294 | (colJ[j].get_read_id() != -1) && 2023-09-20T17:31:07,398 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-09-20T17:31:07,399 src/hapchat/hapchatcore.cpp:1295:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-20T17:31:07,399 1295 | (colQ[i].get_read_id() != -1)) { 2023-09-20T17:31:07,400 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-09-20T17:31:07,402 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::insert_col_and_update(std::vector >&, std::vector&, std::vector&, std::vector&, const Pointer&, const Column&, std::vector&, const Counter&)’: 2023-09-20T17:31:07,402 src/hapchat/hapchatcore.cpp:1350:67: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-20T17:31:07,403 1350 | if(i < input[pointer].size() && input[pointer][i].get_read_id() != -1) 2023-09-20T17:31:07,403 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-09-20T17:31:07,554 In file included from src/polyphase/haplothreader.h:4, 2023-09-20T17:31:07,555 from whatshap/core.cpp:855: 2023-09-20T17:31:07,556 src/polyphase/tuple.h: At global scope: 2023-09-20T17:31:07,556 src/polyphase/tuple.h:26:50: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-09-20T17:31:07,557 26 | 31UL << 20, 31UL << 25, 31UL << 30, 31UL << 35, 2023-09-20T17:31:07,558 | ~~~~~^~~~~ 2023-09-20T17:31:07,558 src/polyphase/tuple.h:27:14: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-09-20T17:31:07,559 27 | 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2023-09-20T17:31:07,559 | ~~~~~^~~~~ 2023-09-20T17:31:07,560 src/polyphase/tuple.h:27:26: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-09-20T17:31:07,561 27 | 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2023-09-20T17:31:07,561 | ~~~~~^~~~~ 2023-09-20T17:31:07,562 src/polyphase/tuple.h:27:38: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-09-20T17:31:07,563 27 | 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2023-09-20T17:31:07,563 | ~~~~~^~~~~ 2023-09-20T17:31:07,564 src/polyphase/tuple.h:27:50: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-09-20T17:31:07,564 27 | 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2023-09-20T17:31:07,565 | ~~~~~^~~~~ 2023-09-20T17:31:07,566 src/polyphase/tuple.h:26:50: error: right operand of shift expression ‘(31 << 35)’ is greater than or equal to the precision 32 of the left operand [-fpermissive] 2023-09-20T17:31:07,566 26 | 31UL << 20, 31UL << 25, 31UL << 30, 31UL << 35, 2023-09-20T17:31:07,567 | ~~~~~^~~~~ 2023-09-20T17:31:07,598 In file included from whatshap/core.cpp:856: 2023-09-20T17:31:07,598 src/polyphase/switchflipcalculator.h:31:14: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-09-20T17:31:07,599 31 | 15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44, 2023-09-20T17:31:07,600 | ~~~~~^~~~~ 2023-09-20T17:31:07,600 src/polyphase/switchflipcalculator.h:31:26: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-09-20T17:31:07,601 31 | 15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44, 2023-09-20T17:31:07,601 | ~~~~~^~~~~ 2023-09-20T17:31:07,602 src/polyphase/switchflipcalculator.h:31:38: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-09-20T17:31:07,602 31 | 15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44, 2023-09-20T17:31:07,603 | ~~~~~^~~~~ 2023-09-20T17:31:07,603 src/polyphase/switchflipcalculator.h:31:50: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-09-20T17:31:07,604 31 | 15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44, 2023-09-20T17:31:07,604 | ~~~~~^~~~~ 2023-09-20T17:31:07,605 src/polyphase/switchflipcalculator.h:32:14: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-09-20T17:31:07,605 32 | 15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60 2023-09-20T17:31:07,606 | ~~~~~^~~~~ 2023-09-20T17:31:07,606 src/polyphase/switchflipcalculator.h:32:26: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-09-20T17:31:07,607 32 | 15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60 2023-09-20T17:31:07,607 | ~~~~~^~~~~ 2023-09-20T17:31:07,608 src/polyphase/switchflipcalculator.h:32:38: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-09-20T17:31:07,609 32 | 15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60 2023-09-20T17:31:07,609 | ~~~~~^~~~~ 2023-09-20T17:31:07,610 src/polyphase/switchflipcalculator.h:32:50: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-09-20T17:31:07,611 32 | 15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60 2023-09-20T17:31:07,611 | ~~~~~^~~~~ 2023-09-20T17:31:07,612 src/polyphase/switchflipcalculator.h:31:14: error: right operand of shift expression ‘(15 << 32)’ is greater than or equal to the precision 32 of the left operand [-fpermissive] 2023-09-20T17:31:07,613 31 | 15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44, 2023-09-20T17:31:07,613 | ~~~~~^~~~~ 2023-09-20T17:31:07,955 whatshap/core.cpp: In function ‘PyObject* __pyx_pf_8whatshap_4core_15PedigreeDPTable_4get_super_reads(__pyx_obj_8whatshap_4core_PedigreeDPTable*)’: 2023-09-20T17:31:07,956 whatshap/core.cpp:8979:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-09-20T17:31:07,957 8979 | for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) { 2023-09-20T17:31:07,957 | ~~~~~~~~~~^~~~~~~~~~~ 2023-09-20T17:31:08,269 whatshap/core.cpp: In function ‘PyObject* __pyx_pf_8whatshap_4core_11HapChatCore_6get_super_reads(__pyx_obj_8whatshap_4core_HapChatCore*)’: 2023-09-20T17:31:08,270 whatshap/core.cpp:15212:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-20T17:31:08,271 15212 | for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { 2023-09-20T17:31:08,271 | ~~~~~~~~~~^~~~~~~~~~~ 2023-09-20T17:31:10,516 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-20T17:31:10,661 ERROR: [present-rich] Building wheel for whatshap (pyproject.toml) exited with 1 2023-09-20T17:31:10,675 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmp7vrs93qh[/] 2023-09-20T17:31:10,675 [bold magenta]cwd[/]: /tmp/pip-wheel-o7lsm4bm/whatshap_fd0717541ea9404cbf376bedd1fc9d1c 2023-09-20T17:31:10,676 Building wheel for whatshap (pyproject.toml): finished with status 'error' 2023-09-20T17:31:10,678 ERROR: Failed building wheel for whatshap 2023-09-20T17:31:10,680 Failed to build whatshap 2023-09-20T17:31:10,682 ERROR: Failed to build one or more wheels 2023-09-20T17:31:10,683 Exception information: 2023-09-20T17:31:10,683 Traceback (most recent call last): 2023-09-20T17:31:10,683 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-20T17:31:10,683 status = run_func(*args) 2023-09-20T17:31:10,683 ^^^^^^^^^^^^^^^ 2023-09-20T17:31:10,683 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-20T17:31:10,683 return func(self, options, args) 2023-09-20T17:31:10,683 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-20T17:31:10,683 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-20T17:31:10,683 raise CommandError("Failed to build one or more wheels") 2023-09-20T17:31:10,683 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-20T17:31:10,687 Removed build tracker: '/tmp/pip-build-tracker-mzeadb43'