2023-09-21T03:54:57,538 Created temporary directory: /tmp/pip-build-tracker-w736rzpf 2023-09-21T03:54:57,539 Initialized build tracking at /tmp/pip-build-tracker-w736rzpf 2023-09-21T03:54:57,540 Created build tracker: /tmp/pip-build-tracker-w736rzpf 2023-09-21T03:54:57,540 Entered build tracker: /tmp/pip-build-tracker-w736rzpf 2023-09-21T03:54:57,541 Created temporary directory: /tmp/pip-wheel-8yxsxbbu 2023-09-21T03:54:57,544 Created temporary directory: /tmp/pip-ephem-wheel-cache-r_ctuqn1 2023-09-21T03:54:57,566 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-21T03:54:57,569 2 location(s) to search for versions of glycopeptidepy: 2023-09-21T03:54:57,569 * https://pypi.org/simple/glycopeptidepy/ 2023-09-21T03:54:57,569 * https://www.piwheels.org/simple/glycopeptidepy/ 2023-09-21T03:54:57,570 Fetching project page and analyzing links: https://pypi.org/simple/glycopeptidepy/ 2023-09-21T03:54:57,571 Getting page https://pypi.org/simple/glycopeptidepy/ 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https://pypi.org/simple/glycopeptidepy/ 2023-09-21T03:54:58,272 Given no hashes to check 1 links for project 'glycopeptidepy': discarding no candidates 2023-09-21T03:54:58,290 Collecting glycopeptidepy==0.0.20 2023-09-21T03:54:58,292 Created temporary directory: /tmp/pip-unpack-hikom623 2023-09-21T03:54:58,911 Downloading glycopeptidepy-0.0.20.tar.gz (1.4 MB) 2023-09-21T03:55:04,216 Added glycopeptidepy==0.0.20 from https://files.pythonhosted.org/packages/34/d1/f331cbfa9258f696e4bd0d0f39317e31a7ac179da6e39848e7fc1f0b3863/glycopeptidepy-0.0.20.tar.gz to build tracker '/tmp/pip-build-tracker-w736rzpf' 2023-09-21T03:55:04,222 Created temporary directory: /tmp/pip-build-env-81xn5v_j 2023-09-21T03:55:04,226 Installing build dependencies: started 2023-09-21T03:55:04,228 Running command pip subprocess to install build dependencies 2023-09-21T03:55:05,464 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-21T03:55:05,984 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-21T03:55:07,678 Collecting setuptools 2023-09-21T03:55:07,679 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-21T03:55:07,685 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-21T03:55:07,888 Collecting wheel 2023-09-21T03:55:07,903 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-21T03:55:10,405 Collecting Cython 2023-09-21T03:55:10,406 Obtaining dependency information for Cython from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata 2023-09-21T03:55:10,413 Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-21T03:55:10,695 Collecting glypy 2023-09-21T03:55:10,712 Downloading https://www.piwheels.org/simple/glypy/glypy-1.0.3-cp311-cp311-linux_armv7l.whl (1.7 MB) 2023-09-21T03:55:10,973 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 6.8 MB/s eta 0:00:00 2023-09-21T03:55:11,396 Collecting hjson (from glypy) 2023-09-21T03:55:11,418 Downloading https://www.piwheels.org/simple/hjson/hjson-3.1.0-py3-none-any.whl (54 kB) 2023-09-21T03:55:11,436 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.0/54.0 kB 4.5 MB/s eta 0:00:00 2023-09-21T03:55:11,534 Collecting six (from glypy) 2023-09-21T03:55:11,549 Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB) 2023-09-21T03:55:11,580 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-21T03:55:11,616 Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB) 2023-09-21T03:55:15,187 Installing collected packages: hjson, wheel, six, setuptools, Cython, glypy 2023-09-21T03:55:15,420 Creating /tmp/pip-build-env-81xn5v_j/overlay/local/bin 2023-09-21T03:55:15,422 changing mode of /tmp/pip-build-env-81xn5v_j/overlay/local/bin/hjson to 755 2023-09-21T03:55:15,650 changing mode of /tmp/pip-build-env-81xn5v_j/overlay/local/bin/wheel to 755 2023-09-21T03:55:20,696 changing mode of /tmp/pip-build-env-81xn5v_j/overlay/local/bin/cygdb to 755 2023-09-21T03:55:20,698 changing mode of /tmp/pip-build-env-81xn5v_j/overlay/local/bin/cython to 755 2023-09-21T03:55:20,700 changing mode of /tmp/pip-build-env-81xn5v_j/overlay/local/bin/cythonize to 755 2023-09-21T03:55:22,049 Successfully installed Cython-3.0.2 glypy-1.0.3 hjson-3.1.0 setuptools-68.2.2 six-1.16.0 wheel-0.41.2 2023-09-21T03:55:22,854 Installing build dependencies: finished with status 'done' 2023-09-21T03:55:22,869 Getting requirements to build wheel: started 2023-09-21T03:55:22,870 Running command Getting requirements to build wheel 2023-09-21T03:55:27,489 /tmp/pip-build-env-81xn5v_j/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-8yxsxbbu/glycopeptidepy_fbe910e7756a49bd977827fa617df416/src/glycopeptidepy/_c/algorithm.pyx 2023-09-21T03:55:27,489 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-21T03:55:28,761 /tmp/pip-build-env-81xn5v_j/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-8yxsxbbu/glycopeptidepy_fbe910e7756a49bd977827fa617df416/src/glycopeptidepy/_c/collectiontools.pxd 2023-09-21T03:55:28,762 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-21T03:55:30,769 /tmp/pip-build-env-81xn5v_j/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-8yxsxbbu/glycopeptidepy_fbe910e7756a49bd977827fa617df416/src/glycopeptidepy/_c/count_table.pxd 2023-09-21T03:55:30,769 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-21T03:55:32,254 warning: src/glycopeptidepy/_c/count_table.pyx:15:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:32,271 warning: src/glycopeptidepy/_c/count_table.pyx:102:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:32,291 warning: src/glycopeptidepy/_c/count_table.pyx:184:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:32,293 warning: src/glycopeptidepy/_c/count_table.pyx:195:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:33,862 /tmp/pip-build-env-81xn5v_j/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-8yxsxbbu/glycopeptidepy_fbe910e7756a49bd977827fa617df416/src/glycopeptidepy/_c/parser.pxd 2023-09-21T03:55:33,863 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-21T03:55:35,737 warning: src/glycopeptidepy/_c/parser.pyx:224:23: Unreachable code 2023-09-21T03:55:36,055 /tmp/pip-build-env-81xn5v_j/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-8yxsxbbu/glycopeptidepy_fbe910e7756a49bd977827fa617df416/src/glycopeptidepy/_c/structure/base.pxd 2023-09-21T03:55:36,056 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-21T03:55:36,066 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:36,067 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:36,067 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:36,068 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:36,138 warning: src/glycopeptidepy/_c/structure/base.pyx:11:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:36,139 warning: src/glycopeptidepy/_c/structure/base.pyx:17:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:37,642 /tmp/pip-build-env-81xn5v_j/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-8yxsxbbu/glycopeptidepy_fbe910e7756a49bd977827fa617df416/src/glycopeptidepy/_c/structure/constants.pxd 2023-09-21T03:55:37,643 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-21T03:55:37,847 /tmp/pip-build-env-81xn5v_j/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-8yxsxbbu/glycopeptidepy_fbe910e7756a49bd977827fa617df416/src/glycopeptidepy/_c/structure/fragment.pxd 2023-09-21T03:55:37,847 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-21T03:55:39,423 warning: src/glycopeptidepy/_c/structure/fragment.pyx:41:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:39,424 warning: src/glycopeptidepy/_c/structure/fragment.pyx:42:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:39,829 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:39,829 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:39,830 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:39,831 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:41,536 /tmp/pip-build-env-81xn5v_j/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-8yxsxbbu/glycopeptidepy_fbe910e7756a49bd977827fa617df416/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd 2023-09-21T03:55:41,537 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-21T03:55:43,428 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:43,429 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:43,429 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:43,430 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:43,770 /tmp/pip-build-env-81xn5v_j/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-8yxsxbbu/glycopeptidepy_fbe910e7756a49bd977827fa617df416/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd 2023-09-21T03:55:43,770 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-21T03:55:45,368 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:45,369 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:45,369 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:45,370 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:47,858 /tmp/pip-build-env-81xn5v_j/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-8yxsxbbu/glycopeptidepy_fbe910e7756a49bd977827fa617df416/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd 2023-09-21T03:55:47,858 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-21T03:55:50,348 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:50,348 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:50,349 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:50,350 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:56,035 /tmp/pip-build-env-81xn5v_j/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-8yxsxbbu/glycopeptidepy_fbe910e7756a49bd977827fa617df416/src/glycopeptidepy/_c/structure/glycan.pxd 2023-09-21T03:55:56,035 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-21T03:55:56,120 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:56,121 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:56,121 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:56,122 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:57,964 /tmp/pip-build-env-81xn5v_j/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-8yxsxbbu/glycopeptidepy_fbe910e7756a49bd977827fa617df416/src/glycopeptidepy/_c/structure/modification/modification.pxd 2023-09-21T03:55:57,970 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-21T03:55:57,983 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:57,984 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:57,984 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:57,985 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:58,362 /tmp/pip-build-env-81xn5v_j/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-8yxsxbbu/glycopeptidepy_fbe910e7756a49bd977827fa617df416/src/glycopeptidepy/_c/structure/modification/rule.pxd 2023-09-21T03:55:58,362 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-21T03:55:58,420 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:58,421 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:58,422 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:58,422 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:59,122 /tmp/pip-build-env-81xn5v_j/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-8yxsxbbu/glycopeptidepy_fbe910e7756a49bd977827fa617df416/src/glycopeptidepy/_c/structure/modification/source.pxd 2023-09-21T03:55:59,123 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-21T03:55:59,184 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:59,185 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:59,186 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:55:59,186 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:56:00,099 /tmp/pip-build-env-81xn5v_j/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-8yxsxbbu/glycopeptidepy_fbe910e7756a49bd977827fa617df416/src/glycopeptidepy/_c/structure/sequence_methods.pxd 2023-09-21T03:56:00,099 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-21T03:56:00,158 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:56:00,159 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:56:00,160 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:56:00,161 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-21T03:56:02,950 Compiling src/glycopeptidepy/_c/collectiontools.pyx because it changed. 2023-09-21T03:56:02,951 Compiling src/glycopeptidepy/_c/count_table.pyx because it changed. 2023-09-21T03:56:02,951 Compiling src/glycopeptidepy/_c/parser.pyx because it changed. 2023-09-21T03:56:02,952 Compiling src/glycopeptidepy/_c/structure/base.pyx because it changed. 2023-09-21T03:56:02,952 Compiling src/glycopeptidepy/_c/structure/fragment.pyx because it changed. 2023-09-21T03:56:02,952 Compiling src/glycopeptidepy/_c/structure/constants.pyx because it changed. 2023-09-21T03:56:02,953 Compiling src/glycopeptidepy/_c/structure/glycan.pyx because it changed. 2023-09-21T03:56:02,953 Compiling src/glycopeptidepy/_c/structure/sequence_methods.pyx because it changed. 2023-09-21T03:56:02,954 Compiling src/glycopeptidepy/_c/structure/modification/rule.pyx because it changed. 2023-09-21T03:56:02,954 Compiling src/glycopeptidepy/_c/structure/modification/modification.pyx because it changed. 2023-09-21T03:56:02,955 Compiling src/glycopeptidepy/_c/structure/modification/source.pyx because it changed. 2023-09-21T03:56:02,955 Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it changed. 2023-09-21T03:56:02,956 Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it changed. 2023-09-21T03:56:02,956 Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it changed. 2023-09-21T03:56:02,957 Compiling src/glycopeptidepy/_c/algorithm.pyx because it changed. 2023-09-21T03:56:02,957 [ 1/15] Cythonizing src/glycopeptidepy/_c/algorithm.pyx 2023-09-21T03:56:02,958 [ 2/15] Cythonizing src/glycopeptidepy/_c/collectiontools.pyx 2023-09-21T03:56:02,958 [ 3/15] Cythonizing src/glycopeptidepy/_c/count_table.pyx 2023-09-21T03:56:02,958 [ 4/15] Cythonizing src/glycopeptidepy/_c/parser.pyx 2023-09-21T03:56:02,959 [ 5/15] Cythonizing src/glycopeptidepy/_c/structure/base.pyx 2023-09-21T03:56:02,960 [ 6/15] Cythonizing src/glycopeptidepy/_c/structure/constants.pyx 2023-09-21T03:56:02,960 [ 7/15] Cythonizing src/glycopeptidepy/_c/structure/fragment.pyx 2023-09-21T03:56:02,961 [ 8/15] Cythonizing src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx 2023-09-21T03:56:02,961 [ 9/15] Cythonizing src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx 2023-09-21T03:56:02,962 [10/15] Cythonizing src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx 2023-09-21T03:56:02,963 [11/15] Cythonizing src/glycopeptidepy/_c/structure/glycan.pyx 2023-09-21T03:56:02,963 [12/15] Cythonizing src/glycopeptidepy/_c/structure/modification/modification.pyx 2023-09-21T03:56:02,964 [13/15] Cythonizing src/glycopeptidepy/_c/structure/modification/rule.pyx 2023-09-21T03:56:02,965 [14/15] Cythonizing src/glycopeptidepy/_c/structure/modification/source.pyx 2023-09-21T03:56:02,965 [15/15] Cythonizing src/glycopeptidepy/_c/structure/sequence_methods.pyx 2023-09-21T03:56:03,037 running egg_info 2023-09-21T03:56:03,043 writing src/glycopeptidepy.egg-info/PKG-INFO 2023-09-21T03:56:03,047 writing dependency_links to src/glycopeptidepy.egg-info/dependency_links.txt 2023-09-21T03:56:03,049 writing requirements to src/glycopeptidepy.egg-info/requires.txt 2023-09-21T03:56:03,051 writing top-level names to src/glycopeptidepy.egg-info/top_level.txt 2023-09-21T03:56:03,095 reading manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-21T03:56:03,100 reading manifest template 'MANIFEST.in' 2023-09-21T03:56:03,268 writing manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-21T03:56:03,762 Getting requirements to build wheel: finished with status 'done' 2023-09-21T03:56:03,773 Created temporary directory: /tmp/pip-modern-metadata-hvjnlrnd 2023-09-21T03:56:03,776 Preparing metadata (pyproject.toml): started 2023-09-21T03:56:03,777 Running command Preparing metadata (pyproject.toml) 2023-09-21T03:56:06,666 running dist_info 2023-09-21T03:56:06,685 creating /tmp/pip-modern-metadata-hvjnlrnd/glycopeptidepy.egg-info 2023-09-21T03:56:06,690 writing /tmp/pip-modern-metadata-hvjnlrnd/glycopeptidepy.egg-info/PKG-INFO 2023-09-21T03:56:06,693 writing dependency_links to /tmp/pip-modern-metadata-hvjnlrnd/glycopeptidepy.egg-info/dependency_links.txt 2023-09-21T03:56:06,695 writing requirements to /tmp/pip-modern-metadata-hvjnlrnd/glycopeptidepy.egg-info/requires.txt 2023-09-21T03:56:06,696 writing top-level names to /tmp/pip-modern-metadata-hvjnlrnd/glycopeptidepy.egg-info/top_level.txt 2023-09-21T03:56:06,697 writing manifest file '/tmp/pip-modern-metadata-hvjnlrnd/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-21T03:56:06,727 reading manifest file '/tmp/pip-modern-metadata-hvjnlrnd/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-21T03:56:06,729 reading manifest template 'MANIFEST.in' 2023-09-21T03:56:06,884 writing manifest file '/tmp/pip-modern-metadata-hvjnlrnd/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-21T03:56:06,885 creating '/tmp/pip-modern-metadata-hvjnlrnd/glycopeptidepy-0.0.20.dist-info' 2023-09-21T03:56:07,109 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-21T03:56:07,114 Source in /tmp/pip-wheel-8yxsxbbu/glycopeptidepy_fbe910e7756a49bd977827fa617df416 has version 0.0.20, which satisfies requirement glycopeptidepy==0.0.20 from https://files.pythonhosted.org/packages/34/d1/f331cbfa9258f696e4bd0d0f39317e31a7ac179da6e39848e7fc1f0b3863/glycopeptidepy-0.0.20.tar.gz 2023-09-21T03:56:07,115 Removed glycopeptidepy==0.0.20 from https://files.pythonhosted.org/packages/34/d1/f331cbfa9258f696e4bd0d0f39317e31a7ac179da6e39848e7fc1f0b3863/glycopeptidepy-0.0.20.tar.gz from build tracker '/tmp/pip-build-tracker-w736rzpf' 2023-09-21T03:56:07,118 Created temporary directory: /tmp/pip-unpack-vd8nwy5u 2023-09-21T03:56:07,119 Created temporary directory: /tmp/pip-unpack-valkk57n 2023-09-21T03:56:07,128 Building wheels for collected packages: glycopeptidepy 2023-09-21T03:56:07,133 Created temporary directory: /tmp/pip-wheel-kfwuca8r 2023-09-21T03:56:07,133 Destination directory: /tmp/pip-wheel-kfwuca8r 2023-09-21T03:56:07,135 Building wheel for glycopeptidepy (pyproject.toml): started 2023-09-21T03:56:07,137 Running command Building wheel for glycopeptidepy (pyproject.toml) 2023-09-21T03:56:10,016 running bdist_wheel 2023-09-21T03:56:10,051 running build 2023-09-21T03:56:10,052 running build_py 2023-09-21T03:56:10,060 creating build 2023-09-21T03:56:10,061 creating build/lib.linux-armv7l-cpython-311 2023-09-21T03:56:10,061 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-21T03:56:10,062 copying src/glycopeptidepy/algorithm.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-21T03:56:10,065 copying src/glycopeptidepy/version.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-21T03:56:10,067 copying src/glycopeptidepy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-21T03:56:10,068 copying src/glycopeptidepy/enzyme.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-21T03:56:10,072 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-21T03:56:10,074 copying src/glycopeptidepy/io/utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-21T03:56:10,076 copying src/glycopeptidepy/io/fasta.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-21T03:56:10,078 copying src/glycopeptidepy/io/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-21T03:56:10,080 copying src/glycopeptidepy/io/annotation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-21T03:56:10,082 copying src/glycopeptidepy/io/mzid.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-21T03:56:10,084 copying src/glycopeptidepy/io/nextprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-21T03:56:10,086 copying src/glycopeptidepy/io/uniprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-21T03:56:10,089 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-21T03:56:10,090 copying src/glycopeptidepy/utils/memoize.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-21T03:56:10,092 copying src/glycopeptidepy/utils/intervals.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-21T03:56:10,094 copying src/glycopeptidepy/utils/iterators.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-21T03:56:10,096 copying src/glycopeptidepy/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-21T03:56:10,098 copying src/glycopeptidepy/utils/collectiontools.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-21T03:56:10,099 copying src/glycopeptidepy/utils/sequence_tree.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-21T03:56:10,102 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-21T03:56:10,103 copying src/glycopeptidepy/structure/parser.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-21T03:56:10,105 copying src/glycopeptidepy/structure/terminal_group.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-21T03:56:10,107 copying src/glycopeptidepy/structure/residue.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-21T03:56:10,110 copying src/glycopeptidepy/structure/composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-21T03:56:10,111 copying src/glycopeptidepy/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-21T03:56:10,113 copying src/glycopeptidepy/structure/fragment.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-21T03:56:10,115 copying src/glycopeptidepy/structure/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-21T03:56:10,117 copying src/glycopeptidepy/structure/sequence_composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-21T03:56:10,120 copying src/glycopeptidepy/structure/glycan.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-21T03:56:10,122 copying src/glycopeptidepy/structure/constants.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-21T03:56:10,124 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-21T03:56:10,125 copying src/glycopeptidepy/_c/cythonize.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-21T03:56:10,127 copying src/glycopeptidepy/_c/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-21T03:56:10,129 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-21T03:56:10,130 copying src/glycopeptidepy/test/sequence_test_suite.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-21T03:56:10,133 copying src/glycopeptidepy/test/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-21T03:56:10,135 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-21T03:56:10,136 copying src/glycopeptidepy/io/cv/term.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-21T03:56:10,138 copying src/glycopeptidepy/io/cv/peff.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-21T03:56:10,140 copying src/glycopeptidepy/io/cv/uniprot_ptm.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-21T03:56:10,142 copying src/glycopeptidepy/io/cv/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-21T03:56:10,144 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-21T03:56:10,145 copying src/glycopeptidepy/structure/sequence/implementation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-21T03:56:10,148 copying src/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-21T03:56:10,150 copying src/glycopeptidepy/structure/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-21T03:56:10,152 copying src/glycopeptidepy/structure/sequence/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-21T03:56:10,154 copying src/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-21T03:56:10,156 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-21T03:56:10,157 copying src/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-21T03:56:10,160 copying src/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-21T03:56:10,161 copying src/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-21T03:56:10,163 copying src/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-21T03:56:10,166 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-21T03:56:10,167 copying src/glycopeptidepy/structure/modification/utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-21T03:56:10,169 copying src/glycopeptidepy/structure/modification/source.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-21T03:56:10,171 copying src/glycopeptidepy/structure/modification/modification.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-21T03:56:10,173 copying src/glycopeptidepy/structure/modification/rule.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-21T03:56:10,176 copying src/glycopeptidepy/structure/modification/descriptors.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-21T03:56:10,177 copying src/glycopeptidepy/structure/modification/glycosylation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-21T03:56:10,180 copying src/glycopeptidepy/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-21T03:56:10,182 copying src/glycopeptidepy/structure/modification/target.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-21T03:56:10,185 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-21T03:56:10,186 copying src/glycopeptidepy/structure/modification/data/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-21T03:56:10,188 copying src/glycopeptidepy/structure/modification/data/unimod.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-21T03:56:10,190 copying src/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-21T03:56:10,193 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-21T03:56:10,194 copying src/glycopeptidepy/_c/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-21T03:56:10,196 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T03:56:10,197 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T03:56:10,199 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-21T03:56:10,200 copying src/glycopeptidepy/_c/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-21T03:56:10,201 running egg_info 2023-09-21T03:56:10,207 writing src/glycopeptidepy.egg-info/PKG-INFO 2023-09-21T03:56:10,209 writing dependency_links to src/glycopeptidepy.egg-info/dependency_links.txt 2023-09-21T03:56:10,211 writing requirements to src/glycopeptidepy.egg-info/requires.txt 2023-09-21T03:56:10,212 writing top-level names to src/glycopeptidepy.egg-info/top_level.txt 2023-09-21T03:56:10,230 reading manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-21T03:56:10,234 reading manifest template 'MANIFEST.in' 2023-09-21T03:56:10,395 writing manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-21T03:56:10,402 copying src/glycopeptidepy/_c/algorithm.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-21T03:56:10,420 copying src/glycopeptidepy/_c/algorithm.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-21T03:56:10,422 copying src/glycopeptidepy/_c/collectiontools.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-21T03:56:10,434 copying src/glycopeptidepy/_c/collectiontools.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-21T03:56:10,436 copying src/glycopeptidepy/_c/collectiontools.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-21T03:56:10,438 copying src/glycopeptidepy/_c/compat.h -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-21T03:56:10,440 copying src/glycopeptidepy/_c/compat.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-21T03:56:10,442 copying src/glycopeptidepy/_c/count_table.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-21T03:56:10,460 copying src/glycopeptidepy/_c/count_table.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-21T03:56:10,462 copying src/glycopeptidepy/_c/count_table.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-21T03:56:10,465 copying src/glycopeptidepy/_c/parser.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-21T03:56:10,476 copying src/glycopeptidepy/_c/parser.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-21T03:56:10,478 copying src/glycopeptidepy/_c/parser.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-21T03:56:10,481 copying src/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-21T03:56:10,484 copying src/glycopeptidepy/structure/modification/data/unimod.json -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-21T03:56:10,513 copying src/glycopeptidepy/_c/structure/base.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-21T03:56:10,532 copying src/glycopeptidepy/_c/structure/base.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-21T03:56:10,534 copying src/glycopeptidepy/_c/structure/base.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-21T03:56:10,536 copying src/glycopeptidepy/_c/structure/constants.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-21T03:56:10,544 copying src/glycopeptidepy/_c/structure/constants.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-21T03:56:10,546 copying src/glycopeptidepy/_c/structure/constants.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-21T03:56:10,548 copying src/glycopeptidepy/_c/structure/fragment.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-21T03:56:10,576 copying src/glycopeptidepy/_c/structure/fragment.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-21T03:56:10,578 copying src/glycopeptidepy/_c/structure/fragment.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-21T03:56:10,581 copying src/glycopeptidepy/_c/structure/glycan.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-21T03:56:10,600 copying src/glycopeptidepy/_c/structure/glycan.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-21T03:56:10,602 copying src/glycopeptidepy/_c/structure/glycan.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-21T03:56:10,604 copying src/glycopeptidepy/_c/structure/sequence_methods.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-21T03:56:10,622 copying src/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-21T03:56:10,625 copying src/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-21T03:56:10,629 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T03:56:10,654 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T03:56:10,662 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T03:56:10,670 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T03:56:10,699 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T03:56:10,701 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T03:56:10,705 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T03:56:10,750 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T03:56:10,752 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T03:56:10,755 copying src/glycopeptidepy/_c/structure/modification/modification.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-21T03:56:10,768 copying src/glycopeptidepy/_c/structure/modification/modification.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-21T03:56:10,770 copying src/glycopeptidepy/_c/structure/modification/modification.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-21T03:56:10,772 copying src/glycopeptidepy/_c/structure/modification/rule.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-21T03:56:10,793 copying src/glycopeptidepy/_c/structure/modification/rule.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-21T03:56:10,795 copying src/glycopeptidepy/_c/structure/modification/rule.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-21T03:56:10,798 copying src/glycopeptidepy/_c/structure/modification/source.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-21T03:56:10,814 copying src/glycopeptidepy/_c/structure/modification/source.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-21T03:56:10,816 copying src/glycopeptidepy/_c/structure/modification/source.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-21T03:56:10,819 copying src/glycopeptidepy/_c/structure/modification/target.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-21T03:56:10,831 running build_ext 2023-09-21T03:56:10,839 building 'glycopeptidepy._c.collectiontools' extension 2023-09-21T03:56:10,840 creating build/temp.linux-armv7l-cpython-311 2023-09-21T03:56:10,841 creating build/temp.linux-armv7l-cpython-311/src 2023-09-21T03:56:10,842 creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy 2023-09-21T03:56:10,843 creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c 2023-09-21T03:56:10,844 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/collectiontools.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/collectiontools.o 2023-09-21T03:56:17,660 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/collectiontools.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so 2023-09-21T03:56:17,779 building 'glycopeptidepy._c.count_table' extension 2023-09-21T03:56:17,780 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/count_table.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/count_table.o 2023-09-21T03:56:19,607 src/glycopeptidepy/_c/count_table.c:4463:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist’ defined but not used [-Wunused-function] 2023-09-21T03:56:19,607 4463 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist(size_t __pyx_v_n, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_inst) { 2023-09-21T03:56:19,608 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T03:56:19,610 src/glycopeptidepy/_c/count_table.c:4192:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get’ defined but not used [-Wunused-function] 2023-09-21T03:56:19,611 4192 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2023-09-21T03:56:19,611 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T03:56:19,614 src/glycopeptidepy/_c/count_table.c:3950:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put’ defined but not used [-Wunused-function] 2023-09-21T03:56:19,615 3950 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2023-09-21T03:56:19,615 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T03:56:34,913 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/count_table.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so 2023-09-21T03:56:35,034 building 'glycopeptidepy._c.parser' extension 2023-09-21T03:56:35,035 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/parser.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/parser.o 2023-09-21T03:56:35,398 In file included from src/glycopeptidepy/_c/parser.c:1187: 2023-09-21T03:56:35,399 src/glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2023-09-21T03:56:35,400 38 | #define PyInt_Check PyLong_Check 2023-09-21T03:56:35,400 | 2023-09-21T03:56:35,401 src/glycopeptidepy/_c/parser.c:1085: note: this is the location of the previous definition 2023-09-21T03:56:35,401 1085 | #define PyInt_Check(op) PyLong_Check(op) 2023-09-21T03:56:35,402 | 2023-09-21T03:56:35,403 src/glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2023-09-21T03:56:35,403 39 | #define PyInt_CheckExact PyLong_CheckExact 2023-09-21T03:56:35,404 | 2023-09-21T03:56:35,404 src/glycopeptidepy/_c/parser.c:1086: note: this is the location of the previous definition 2023-09-21T03:56:35,404 1086 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2023-09-21T03:56:35,405 | 2023-09-21T03:56:35,418 src/glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser__cstring_sequence_tokenizer’: 2023-09-21T03:56:35,421 src/glycopeptidepy/_c/parser.c:3603:21: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-21T03:56:35,421 3603 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2023-09-21T03:56:35,422 | ^ 2023-09-21T03:56:35,490 src/glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser_parse_simple’: 2023-09-21T03:56:35,497 src/glycopeptidepy/_c/parser.c:7712:23: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-21T03:56:35,497 7712 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2023-09-21T03:56:35,498 | ^ 2023-09-21T03:56:43,922 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/parser.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so 2023-09-21T03:56:44,082 building 'glycopeptidepy._c.structure.base' extension 2023-09-21T03:56:44,083 creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure 2023-09-21T03:56:44,083 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/base.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/base.o 2023-09-21T03:57:06,535 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/base.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so 2023-09-21T03:57:06,685 building 'glycopeptidepy._c.structure.fragment' extension 2023-09-21T03:57:06,685 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/fragment.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragment.o 2023-09-21T03:57:07,103 In file included from src/glycopeptidepy/_c/structure/fragment.c:1188: 2023-09-21T03:57:07,104 src/glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2023-09-21T03:57:07,105 38 | #define PyInt_Check PyLong_Check 2023-09-21T03:57:07,105 | 2023-09-21T03:57:07,106 src/glycopeptidepy/_c/structure/fragment.c:1085: note: this is the location of the previous definition 2023-09-21T03:57:07,107 1085 | #define PyInt_Check(op) PyLong_Check(op) 2023-09-21T03:57:07,108 | 2023-09-21T03:57:07,109 src/glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2023-09-21T03:57:07,109 39 | #define PyInt_CheckExact PyLong_CheckExact 2023-09-21T03:57:07,110 | 2023-09-21T03:57:07,110 src/glycopeptidepy/_c/structure/fragment.c:1086: note: this is the location of the previous definition 2023-09-21T03:57:07,111 1086 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2023-09-21T03:57:07,111 | 2023-09-21T03:57:07,150 src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_init_str_ints’: 2023-09-21T03:57:07,155 src/glycopeptidepy/_c/structure/fragment.c:5798:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-21T03:57:07,156 5798 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2023-09-21T03:57:07,156 | ^ 2023-09-21T03:57:07,158 src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_get_str_int’: 2023-09-21T03:57:07,163 src/glycopeptidepy/_c/structure/fragment.c:6027:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-21T03:57:07,164 6027 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2023-09-21T03:57:07,164 | ^ 2023-09-21T03:57:07,404 src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_15PeptideFragment_get_fragment_name’: 2023-09-21T03:57:07,418 src/glycopeptidepy/_c/structure/fragment.c:14261:22: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-21T03:57:07,419 14261 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-21T03:57:07,419 | ^ 2023-09-21T03:57:07,437 src/glycopeptidepy/_c/structure/fragment.c:14576:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-21T03:57:07,438 14576 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-21T03:57:07,438 | ^ 2023-09-21T03:57:07,453 src/glycopeptidepy/_c/structure/fragment.c:14749:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-21T03:57:07,454 14749 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-21T03:57:07,454 | ^ 2023-09-21T03:57:07,467 src/glycopeptidepy/_c/structure/fragment.c:14926:24: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-21T03:57:07,468 14926 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-21T03:57:07,469 | ^ 2023-09-21T03:57:46,203 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragment.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so 2023-09-21T03:57:46,415 building 'glycopeptidepy._c.structure.constants' extension 2023-09-21T03:57:46,416 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/constants.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/constants.o 2023-09-21T03:57:54,415 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/constants.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so 2023-09-21T03:57:54,525 building 'glycopeptidepy._c.structure.glycan' extension 2023-09-21T03:57:54,527 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/glycan.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/glycan.o 2023-09-21T03:58:17,616 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/glycan.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so 2023-09-21T03:58:17,748 building 'glycopeptidepy._c.structure.sequence_methods' extension 2023-09-21T03:58:17,749 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/sequence_methods.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/sequence_methods.o 2023-09-21T03:58:18,414 src/glycopeptidepy/_c/structure/sequence_methods.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_16sequence_methods_add_modification’: 2023-09-21T03:58:18,428 src/glycopeptidepy/_c/structure/sequence_methods.c:14877:36: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T03:58:18,428 14877 | __pyx_t_7 = (__pyx_v_position_ >= __pyx_t_8); 2023-09-21T03:58:18,429 | ^~ 2023-09-21T03:58:38,692 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/sequence_methods.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so 2023-09-21T03:58:38,823 building 'glycopeptidepy._c.structure.modification.rule' extension 2023-09-21T03:58:38,824 creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification 2023-09-21T03:58:38,824 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/modification/rule.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/rule.o 2023-09-21T03:58:51,698 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/rule.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so 2023-09-21T03:58:51,841 building 'glycopeptidepy._c.structure.modification.modification' extension 2023-09-21T03:58:51,842 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/modification/modification.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/modification.o 2023-09-21T03:58:59,921 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/modification.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so 2023-09-21T03:59:00,031 building 'glycopeptidepy._c.structure.modification.source' extension 2023-09-21T03:59:00,032 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/modification/source.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/source.o 2023-09-21T03:59:08,066 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/source.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so 2023-09-21T03:59:08,241 building 'glycopeptidepy._c.structure.fragmentation_strategy.base' extension 2023-09-21T03:59:08,242 creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T03:59:08,243 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.o 2023-09-21T03:59:17,601 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so 2023-09-21T03:59:17,712 building 'glycopeptidepy._c.structure.fragmentation_strategy.peptide' extension 2023-09-21T03:59:17,712 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o 2023-09-21T04:00:09,198 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so 2023-09-21T04:00:09,365 building 'glycopeptidepy._c.structure.fragmentation_strategy.glycan' extension 2023-09-21T04:00:09,366 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o 2023-09-21T04:00:10,009 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_fucosylate_extended’: 2023-09-21T04:00:10,021 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:12967:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2023-09-21T04:00:10,022 12967 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-09-21T04:00:10,023 | ^ 2023-09-21T04:00:10,033 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:12984:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2023-09-21T04:00:10,034 12984 | for (__pyx_t_9 = 1; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-09-21T04:00:10,035 | ^ 2023-09-21T04:00:10,170 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_n_glycan_stub_fragments’: 2023-09-21T04:00:10,186 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17287:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-21T04:00:10,187 17287 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-09-21T04:00:10,188 | ^ 2023-09-21T04:00:10,207 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_o_glycan_stub_fragments’: 2023-09-21T04:00:10,224 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17970:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-09-21T04:00:10,225 17970 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_15; __pyx_t_9+=1) { 2023-09-21T04:00:10,225 | ^ 2023-09-21T04:00:10,282 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_gag_linker_stub_fragments’: 2023-09-21T04:00:10,300 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:19888:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-09-21T04:00:10,301 19888 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_15; __pyx_t_9+=1) { 2023-09-21T04:00:10,302 | ^ 2023-09-21T04:00:10,354 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_mixed_stub_fragments’: 2023-09-21T04:00:10,374 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:21226:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-21T04:00:10,374 21226 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-09-21T04:00:10,375 | ^ 2023-09-21T04:00:10,395 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:21285:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-21T04:00:10,396 21285 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-09-21T04:00:10,396 | ^ 2023-09-21T04:00:10,416 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:21344:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-21T04:00:10,417 21344 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-09-21T04:00:10,417 | ^ 2023-09-21T04:00:43,006 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so 2023-09-21T04:00:43,150 building 'glycopeptidepy._c.algorithm' extension 2023-09-21T04:00:43,151 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/algorithm.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/algorithm.o 2023-09-21T04:00:58,705 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/algorithm.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so 2023-09-21T04:00:58,836 installing to build/bdist.linux-armv7l/wheel 2023-09-21T04:00:58,837 running install 2023-09-21T04:00:58,861 running install_lib 2023-09-21T04:00:58,868 creating build/bdist.linux-armv7l 2023-09-21T04:00:58,869 creating build/bdist.linux-armv7l/wheel 2023-09-21T04:00:58,870 creating build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-21T04:00:58,871 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-21T04:00:58,872 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-21T04:00:58,875 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-21T04:00:58,875 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/term.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-21T04:00:58,878 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/peff.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-21T04:00:58,880 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-21T04:00:58,882 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-21T04:00:58,883 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-21T04:00:58,886 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-21T04:00:58,888 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/annotation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-21T04:00:58,890 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/mzid.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-21T04:00:58,892 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/nextprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-21T04:00:58,894 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-21T04:00:58,896 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/algorithm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-21T04:00:58,899 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-21T04:00:58,900 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/memoize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-21T04:00:58,902 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-21T04:00:58,905 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/iterators.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-21T04:00:58,906 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-21T04:00:58,908 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/collectiontools.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-21T04:00:58,910 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/sequence_tree.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-21T04:00:58,913 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-21T04:00:58,914 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/parser.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-21T04:00:58,916 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/terminal_group.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-21T04:00:58,918 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-21T04:00:58,921 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-21T04:00:58,922 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/implementation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-21T04:00:58,924 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-21T04:00:58,926 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-21T04:00:58,928 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-21T04:00:58,931 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-21T04:00:58,933 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-21T04:00:58,935 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-21T04:00:58,936 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-21T04:00:58,939 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-21T04:00:58,942 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-21T04:00:58,943 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-21T04:00:58,946 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-21T04:00:58,948 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-21T04:00:58,950 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-21T04:00:58,954 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-21T04:00:58,956 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-21T04:00:58,959 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/constants.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-21T04:00:58,962 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-21T04:00:58,963 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-21T04:00:58,965 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/source.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-21T04:00:58,968 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-21T04:00:58,970 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/rule.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-21T04:00:58,974 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-21T04:00:58,975 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/unimod.json -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-21T04:00:59,011 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-21T04:00:59,012 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-21T04:00:59,014 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-21T04:00:59,016 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-21T04:00:59,018 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/descriptors.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-21T04:00:59,020 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/glycosylation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-21T04:00:59,023 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-21T04:00:59,025 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/target.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-21T04:00:59,027 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/version.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-21T04:00:59,029 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-21T04:00:59,032 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,033 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,045 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/compat.h -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,047 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/cythonize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,049 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,051 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,053 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,067 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,082 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,085 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,086 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,088 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,090 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,093 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,114 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,149 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,171 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,173 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,175 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,183 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,207 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,227 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,229 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,232 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,254 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,255 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,257 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,260 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T04:00:59,261 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T04:00:59,263 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T04:00:59,265 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T04:00:59,298 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T04:00:59,300 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T04:00:59,336 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T04:00:59,346 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T04:00:59,374 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T04:00:59,377 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T04:00:59,385 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T04:00:59,386 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T04:00:59,389 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T04:00:59,391 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-21T04:00:59,426 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,433 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,460 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,478 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-21T04:00:59,479 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-21T04:00:59,481 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-21T04:00:59,483 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-21T04:00:59,490 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-21T04:00:59,492 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-21T04:00:59,494 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-21T04:00:59,510 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-21T04:00:59,530 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-21T04:00:59,532 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-21T04:00:59,546 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-21T04:00:59,548 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/target.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-21T04:00:59,550 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-21T04:00:59,561 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-21T04:00:59,563 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-21T04:00:59,578 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-21T04:00:59,581 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,584 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,587 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,597 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,605 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,618 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,625 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,627 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,629 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,652 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/compat.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,654 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-21T04:00:59,656 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-21T04:00:59,657 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/sequence_test_suite.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-21T04:00:59,659 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-21T04:00:59,661 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-21T04:00:59,663 running install_egg_info 2023-09-21T04:00:59,676 Copying src/glycopeptidepy.egg-info to build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.20-py3.11.egg-info 2023-09-21T04:00:59,689 running install_scripts 2023-09-21T04:00:59,737 creating build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.20.dist-info/WHEEL 2023-09-21T04:00:59,740 creating '/tmp/pip-wheel-kfwuca8r/.tmp-4nqikz2j/glycopeptidepy-0.0.20-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-21T04:00:59,743 adding 'glycopeptidepy/__init__.py' 2023-09-21T04:00:59,745 adding 'glycopeptidepy/algorithm.py' 2023-09-21T04:00:59,747 adding 'glycopeptidepy/enzyme.py' 2023-09-21T04:00:59,748 adding 'glycopeptidepy/version.py' 2023-09-21T04:00:59,750 adding 'glycopeptidepy/_c/__init__.py' 2023-09-21T04:00:59,807 adding 'glycopeptidepy/_c/algorithm.c' 2023-09-21T04:00:59,959 adding 'glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so' 2023-09-21T04:00:59,966 adding 'glycopeptidepy/_c/algorithm.pyx' 2023-09-21T04:01:00,003 adding 'glycopeptidepy/_c/collectiontools.c' 2023-09-21T04:01:00,077 adding 'glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so' 2023-09-21T04:01:00,081 adding 'glycopeptidepy/_c/collectiontools.pxd' 2023-09-21T04:01:00,082 adding 'glycopeptidepy/_c/collectiontools.pyx' 2023-09-21T04:01:00,084 adding 'glycopeptidepy/_c/compat.h' 2023-09-21T04:01:00,086 adding 'glycopeptidepy/_c/compat.pxd' 2023-09-21T04:01:00,163 adding 'glycopeptidepy/_c/count_table.c' 2023-09-21T04:01:00,324 adding 'glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so' 2023-09-21T04:01:00,331 adding 'glycopeptidepy/_c/count_table.pxd' 2023-09-21T04:01:00,335 adding 'glycopeptidepy/_c/count_table.pyx' 2023-09-21T04:01:00,336 adding 'glycopeptidepy/_c/cythonize.py' 2023-09-21T04:01:00,379 adding 'glycopeptidepy/_c/parser.c' 2023-09-21T04:01:00,464 adding 'glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so' 2023-09-21T04:01:00,468 adding 'glycopeptidepy/_c/parser.pxd' 2023-09-21T04:01:00,470 adding 'glycopeptidepy/_c/parser.pyx' 2023-09-21T04:01:00,473 adding 'glycopeptidepy/_c/structure/__init__.py' 2023-09-21T04:01:00,548 adding 'glycopeptidepy/_c/structure/base.c' 2023-09-21T04:01:00,759 adding 'glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so' 2023-09-21T04:01:00,768 adding 'glycopeptidepy/_c/structure/base.pxd' 2023-09-21T04:01:00,770 adding 'glycopeptidepy/_c/structure/base.pyx' 2023-09-21T04:01:00,803 adding 'glycopeptidepy/_c/structure/constants.c' 2023-09-21T04:01:00,873 adding 'glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so' 2023-09-21T04:01:00,877 adding 'glycopeptidepy/_c/structure/constants.pxd' 2023-09-21T04:01:00,878 adding 'glycopeptidepy/_c/structure/constants.pyx' 2023-09-21T04:01:00,990 adding 'glycopeptidepy/_c/structure/fragment.c' 2023-09-21T04:01:01,304 adding 'glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so' 2023-09-21T04:01:01,318 adding 'glycopeptidepy/_c/structure/fragment.pxd' 2023-09-21T04:01:01,321 adding 'glycopeptidepy/_c/structure/fragment.pyx' 2023-09-21T04:01:01,396 adding 'glycopeptidepy/_c/structure/glycan.c' 2023-09-21T04:01:01,616 adding 'glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so' 2023-09-21T04:01:01,625 adding 'glycopeptidepy/_c/structure/glycan.pxd' 2023-09-21T04:01:01,627 adding 'glycopeptidepy/_c/structure/glycan.pyx' 2023-09-21T04:01:01,701 adding 'glycopeptidepy/_c/structure/sequence_methods.c' 2023-09-21T04:01:01,896 adding 'glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so' 2023-09-21T04:01:01,904 adding 'glycopeptidepy/_c/structure/sequence_methods.pxd' 2023-09-21T04:01:01,907 adding 'glycopeptidepy/_c/structure/sequence_methods.pyx' 2023-09-21T04:01:01,909 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py' 2023-09-21T04:01:01,952 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.c' 2023-09-21T04:01:02,040 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so' 2023-09-21T04:01:02,044 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd' 2023-09-21T04:01:02,046 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx' 2023-09-21T04:01:02,153 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c' 2023-09-21T04:01:02,449 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so' 2023-09-21T04:01:02,462 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd' 2023-09-21T04:01:02,466 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx' 2023-09-21T04:01:02,616 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c' 2023-09-21T04:01:03,029 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so' 2023-09-21T04:01:03,045 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd' 2023-09-21T04:01:03,048 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx' 2023-09-21T04:01:03,050 adding 'glycopeptidepy/_c/structure/modification/__init__.py' 2023-09-21T04:01:03,090 adding 'glycopeptidepy/_c/structure/modification/modification.c' 2023-09-21T04:01:03,179 adding 'glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so' 2023-09-21T04:01:03,186 adding 'glycopeptidepy/_c/structure/modification/modification.pxd' 2023-09-21T04:01:03,188 adding 'glycopeptidepy/_c/structure/modification/modification.pyx' 2023-09-21T04:01:03,240 adding 'glycopeptidepy/_c/structure/modification/rule.c' 2023-09-21T04:01:03,375 adding 'glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so' 2023-09-21T04:01:03,381 adding 'glycopeptidepy/_c/structure/modification/rule.pxd' 2023-09-21T04:01:03,383 adding 'glycopeptidepy/_c/structure/modification/rule.pyx' 2023-09-21T04:01:03,424 adding 'glycopeptidepy/_c/structure/modification/source.c' 2023-09-21T04:01:03,511 adding 'glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so' 2023-09-21T04:01:03,516 adding 'glycopeptidepy/_c/structure/modification/source.pxd' 2023-09-21T04:01:03,517 adding 'glycopeptidepy/_c/structure/modification/source.pyx' 2023-09-21T04:01:03,518 adding 'glycopeptidepy/_c/structure/modification/target.pyx' 2023-09-21T04:01:03,520 adding 'glycopeptidepy/io/__init__.py' 2023-09-21T04:01:03,522 adding 'glycopeptidepy/io/annotation.py' 2023-09-21T04:01:03,526 adding 'glycopeptidepy/io/fasta.py' 2023-09-21T04:01:03,527 adding 'glycopeptidepy/io/mzid.py' 2023-09-21T04:01:03,529 adding 'glycopeptidepy/io/nextprot.py' 2023-09-21T04:01:03,531 adding 'glycopeptidepy/io/uniprot.py' 2023-09-21T04:01:03,533 adding 'glycopeptidepy/io/utils.py' 2023-09-21T04:01:03,535 adding 'glycopeptidepy/io/cv/__init__.py' 2023-09-21T04:01:03,537 adding 'glycopeptidepy/io/cv/peff.py' 2023-09-21T04:01:03,538 adding 'glycopeptidepy/io/cv/term.py' 2023-09-21T04:01:03,540 adding 'glycopeptidepy/io/cv/uniprot_ptm.py' 2023-09-21T04:01:03,542 adding 'glycopeptidepy/structure/__init__.py' 2023-09-21T04:01:03,543 adding 'glycopeptidepy/structure/base.py' 2023-09-21T04:01:03,544 adding 'glycopeptidepy/structure/composition.py' 2023-09-21T04:01:03,545 adding 'glycopeptidepy/structure/constants.py' 2023-09-21T04:01:03,548 adding 'glycopeptidepy/structure/fragment.py' 2023-09-21T04:01:03,550 adding 'glycopeptidepy/structure/glycan.py' 2023-09-21T04:01:03,552 adding 'glycopeptidepy/structure/parser.py' 2023-09-21T04:01:03,554 adding 'glycopeptidepy/structure/residue.py' 2023-09-21T04:01:03,556 adding 'glycopeptidepy/structure/sequence_composition.py' 2023-09-21T04:01:03,557 adding 'glycopeptidepy/structure/terminal_group.py' 2023-09-21T04:01:03,559 adding 'glycopeptidepy/structure/fragmentation_strategy/__init__.py' 2023-09-21T04:01:03,561 adding 'glycopeptidepy/structure/fragmentation_strategy/base.py' 2023-09-21T04:01:03,565 adding 'glycopeptidepy/structure/fragmentation_strategy/glycan.py' 2023-09-21T04:01:03,568 adding 'glycopeptidepy/structure/fragmentation_strategy/peptide.py' 2023-09-21T04:01:03,570 adding 'glycopeptidepy/structure/modification/__init__.py' 2023-09-21T04:01:03,572 adding 'glycopeptidepy/structure/modification/descriptors.py' 2023-09-21T04:01:03,574 adding 'glycopeptidepy/structure/modification/glycosylation.py' 2023-09-21T04:01:03,575 adding 'glycopeptidepy/structure/modification/modification.py' 2023-09-21T04:01:03,579 adding 'glycopeptidepy/structure/modification/rule.py' 2023-09-21T04:01:03,581 adding 'glycopeptidepy/structure/modification/source.py' 2023-09-21T04:01:03,583 adding 'glycopeptidepy/structure/modification/target.py' 2023-09-21T04:01:03,584 adding 'glycopeptidepy/structure/modification/utils.py' 2023-09-21T04:01:03,586 adding 'glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv' 2023-09-21T04:01:03,587 adding 'glycopeptidepy/structure/modification/data/__init__.py' 2023-09-21T04:01:03,588 adding 'glycopeptidepy/structure/modification/data/patch_unimod.py' 2023-09-21T04:01:03,653 adding 'glycopeptidepy/structure/modification/data/unimod.json' 2023-09-21T04:01:03,670 adding 'glycopeptidepy/structure/modification/data/unimod.py' 2023-09-21T04:01:03,672 adding 'glycopeptidepy/structure/sequence/__init__.py' 2023-09-21T04:01:03,674 adding 'glycopeptidepy/structure/sequence/base.py' 2023-09-21T04:01:03,675 adding 'glycopeptidepy/structure/sequence/glycosylated_sequence.py' 2023-09-21T04:01:03,677 adding 'glycopeptidepy/structure/sequence/implementation.py' 2023-09-21T04:01:03,679 adding 'glycopeptidepy/structure/sequence/mutable_sequence.py' 2023-09-21T04:01:03,680 adding 'glycopeptidepy/test/__init__.py' 2023-09-21T04:01:03,682 adding 'glycopeptidepy/test/sequence_test_suite.py' 2023-09-21T04:01:03,684 adding 'glycopeptidepy/utils/__init__.py' 2023-09-21T04:01:03,685 adding 'glycopeptidepy/utils/collectiontools.py' 2023-09-21T04:01:03,687 adding 'glycopeptidepy/utils/intervals.py' 2023-09-21T04:01:03,689 adding 'glycopeptidepy/utils/iterators.py' 2023-09-21T04:01:03,690 adding 'glycopeptidepy/utils/memoize.py' 2023-09-21T04:01:03,691 adding 'glycopeptidepy/utils/sequence_tree.py' 2023-09-21T04:01:03,694 adding 'glycopeptidepy-0.0.20.dist-info/METADATA' 2023-09-21T04:01:03,694 adding 'glycopeptidepy-0.0.20.dist-info/WHEEL' 2023-09-21T04:01:03,695 adding 'glycopeptidepy-0.0.20.dist-info/top_level.txt' 2023-09-21T04:01:03,698 adding 'glycopeptidepy-0.0.20.dist-info/RECORD' 2023-09-21T04:01:03,771 removing build/bdist.linux-armv7l/wheel 2023-09-21T04:01:03,969 Building wheel for glycopeptidepy (pyproject.toml): finished with status 'done' 2023-09-21T04:01:04,127 Created wheel for glycopeptidepy: filename=glycopeptidepy-0.0.20-cp311-cp311-linux_armv7l.whl size=6677371 sha256=7be8316f9d039cc40411fa95c1eace0b91ea64b65c9248176c461502b36564b5 2023-09-21T04:01:04,128 Stored in directory: /tmp/pip-ephem-wheel-cache-r_ctuqn1/wheels/b2/66/2e/39c23b2c6f9d0026913f80e1305b9980b0a4c45a613f76c92f 2023-09-21T04:01:04,143 Successfully built glycopeptidepy 2023-09-21T04:01:04,322 Removed build tracker: '/tmp/pip-build-tracker-w736rzpf'