2023-09-21T08:06:58,138 Created temporary directory: /tmp/pip-build-tracker-bchp2f6s
2023-09-21T08:06:58,139 Initialized build tracking at /tmp/pip-build-tracker-bchp2f6s
2023-09-21T08:06:58,139 Created build tracker: /tmp/pip-build-tracker-bchp2f6s
2023-09-21T08:06:58,140 Entered build tracker: /tmp/pip-build-tracker-bchp2f6s
2023-09-21T08:06:58,141 Created temporary directory: /tmp/pip-wheel-l26ioz8q
2023-09-21T08:06:58,144 Created temporary directory: /tmp/pip-ephem-wheel-cache-dxmxx6r2
2023-09-21T08:06:58,166 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-21T08:06:58,170 2 location(s) to search for versions of scipion-em-tomo3d:
2023-09-21T08:06:58,170 * https://pypi.org/simple/scipion-em-tomo3d/
2023-09-21T08:06:58,170 * https://www.piwheels.org/simple/scipion-em-tomo3d/
2023-09-21T08:06:58,171 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-tomo3d/
2023-09-21T08:06:58,172 Getting page https://pypi.org/simple/scipion-em-tomo3d/
2023-09-21T08:06:58,174 Found index url https://pypi.org/simple/
2023-09-21T08:06:58,392 Fetched page https://pypi.org/simple/scipion-em-tomo3d/ as application/vnd.pypi.simple.v1+json
2023-09-21T08:06:58,394   Found link https://files.pythonhosted.org/packages/6e/7e/a68dc39919161191c35e9bcec3475f69740f49f8f8138499ccfddf0f5f0b/scipion-em-tomo3d-3.1.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.0
2023-09-21T08:06:58,395   Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/cb/5b/aac5f9a318fe6bbb63e6ca8afd02528b2982f008a87129feefed6409bc31/scipion_em_tomo3d-3.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/)
2023-09-21T08:06:58,395   Found link https://files.pythonhosted.org/packages/9d/4e/4ed2583cdc9b328f31ce35dac04e8dcf3a7e6c4c28cb5a2b8e3d0de28f66/scipion-em-tomo3d-3.1.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.1
2023-09-21T08:06:58,396   Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/f8/4c/c4fe28e7ecff9521fe708df2b9de13ca97d1d03104a77a16b1240fdef7c1/scipion_em_tomo3d-3.1.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/)
2023-09-21T08:06:58,397 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-tomo3d/
2023-09-21T08:06:58,397 Getting page https://www.piwheels.org/simple/scipion-em-tomo3d/
2023-09-21T08:06:58,399 Found index url https://www.piwheels.org/simple/
2023-09-21T08:06:58,834 Fetched page https://www.piwheels.org/simple/scipion-em-tomo3d/ as text/html
2023-09-21T08:06:58,837 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-tomo3d/
2023-09-21T08:06:58,838 Skipping link: not a file: https://pypi.org/simple/scipion-em-tomo3d/
2023-09-21T08:06:58,883 Given no hashes to check 1 links for project 'scipion-em-tomo3d': discarding no candidates
2023-09-21T08:06:58,922 Collecting scipion-em-tomo3d==3.1.0
2023-09-21T08:06:58,925   Created temporary directory: /tmp/pip-unpack-c9m92by6
2023-09-21T08:06:59,144   Downloading scipion-em-tomo3d-3.1.0.tar.gz (27 kB)
2023-09-21T08:06:59,213   Added scipion-em-tomo3d==3.1.0 from https://files.pythonhosted.org/packages/6e/7e/a68dc39919161191c35e9bcec3475f69740f49f8f8138499ccfddf0f5f0b/scipion-em-tomo3d-3.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-bchp2f6s'
2023-09-21T08:06:59,214   Running setup.py (path:/tmp/pip-wheel-l26ioz8q/scipion-em-tomo3d_f5540e0ee2f54f5d9c17ae68ce33dc93/setup.py) egg_info for package scipion-em-tomo3d
2023-09-21T08:06:59,215   Created temporary directory: /tmp/pip-pip-egg-info-k1xytxnc
2023-09-21T08:06:59,216   Preparing metadata (setup.py): started
2023-09-21T08:06:59,217   Running command python setup.py egg_info
2023-09-21T08:06:59,632   Traceback (most recent call last):
2023-09-21T08:06:59,632     File "<string>", line 2, in <module>
2023-09-21T08:06:59,633     File "<pip-setuptools-caller>", line 34, in <module>
2023-09-21T08:06:59,634     File "/tmp/pip-wheel-l26ioz8q/scipion-em-tomo3d_f5540e0ee2f54f5d9c17ae68ce33dc93/setup.py", line 13, in <module>
2023-09-21T08:06:59,635       from tomo3d import __version__
2023-09-21T08:06:59,636     File "/tmp/pip-wheel-l26ioz8q/scipion-em-tomo3d_f5540e0ee2f54f5d9c17ae68ce33dc93/tomo3d/__init__.py", line 31, in <module>
2023-09-21T08:06:59,637       import pwem
2023-09-21T08:06:59,638   ModuleNotFoundError: No module named 'pwem'
2023-09-21T08:06:59,702   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-09-21T08:06:59,715   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-09-21T08:06:59,715   exec(compile('"'"''"'"''"'"'
2023-09-21T08:06:59,715   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-21T08:06:59,715   #
2023-09-21T08:06:59,715   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-21T08:06:59,715   #   import from `distutils.core` to work with newer packaging standards.
2023-09-21T08:06:59,715   # - It provides a clear error message when setuptools is not installed.
2023-09-21T08:06:59,715   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-21T08:06:59,715   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-21T08:06:59,715   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-21T08:06:59,715   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-21T08:06:59,715   import os, sys, tokenize
2023-09-21T08:06:59,715   
2023-09-21T08:06:59,715   try:
2023-09-21T08:06:59,715       import setuptools
2023-09-21T08:06:59,715   except ImportError as error:
2023-09-21T08:06:59,715       print(
2023-09-21T08:06:59,715           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-21T08:06:59,715           "the build environment.",
2023-09-21T08:06:59,715           file=sys.stderr,
2023-09-21T08:06:59,715       )
2023-09-21T08:06:59,715       sys.exit(1)
2023-09-21T08:06:59,715   
2023-09-21T08:06:59,715   __file__ = %r
2023-09-21T08:06:59,715   sys.argv[0] = __file__
2023-09-21T08:06:59,715   
2023-09-21T08:06:59,715   if os.path.exists(__file__):
2023-09-21T08:06:59,715       filename = __file__
2023-09-21T08:06:59,715       with tokenize.open(__file__) as f:
2023-09-21T08:06:59,715           setup_py_code = f.read()
2023-09-21T08:06:59,715   else:
2023-09-21T08:06:59,715       filename = "<auto-generated setuptools caller>"
2023-09-21T08:06:59,715       setup_py_code = "from setuptools import setup; setup()"
2023-09-21T08:06:59,715   
2023-09-21T08:06:59,715   exec(compile(setup_py_code, filename, "exec"))
2023-09-21T08:06:59,715   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-l26ioz8q/scipion-em-tomo3d_f5540e0ee2f54f5d9c17ae68ce33dc93/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-k1xytxnc[/]
2023-09-21T08:06:59,716   [bold magenta]cwd[/]: /tmp/pip-wheel-l26ioz8q/scipion-em-tomo3d_f5540e0ee2f54f5d9c17ae68ce33dc93/
2023-09-21T08:06:59,716   Preparing metadata (setup.py): finished with status 'error'
2023-09-21T08:06:59,718 ERROR: [present-rich] metadata generation failed
2023-09-21T08:06:59,723 Exception information:
2023-09-21T08:06:59,723 Traceback (most recent call last):
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-09-21T08:06:59,723     call_subprocess(
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-09-21T08:06:59,723     raise error
2023-09-21T08:06:59,723 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-09-21T08:06:59,723 
2023-09-21T08:06:59,723 The above exception was the direct cause of the following exception:
2023-09-21T08:06:59,723 
2023-09-21T08:06:59,723 Traceback (most recent call last):
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-21T08:06:59,723     status = run_func(*args)
2023-09-21T08:06:59,723              ^^^^^^^^^^^^^^^
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-21T08:06:59,723     return func(self, options, args)
2023-09-21T08:06:59,723            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2023-09-21T08:06:59,723     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-09-21T08:06:59,723                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-09-21T08:06:59,723     result = self._result = resolver.resolve(
2023-09-21T08:06:59,723                             ^^^^^^^^^^^^^^^^^
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2023-09-21T08:06:59,723     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-09-21T08:06:59,723             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2023-09-21T08:06:59,723     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2023-09-21T08:06:59,723     if not criterion.candidates:
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2023-09-21T08:06:59,723     return bool(self._sequence)
2023-09-21T08:06:59,723            ^^^^^^^^^^^^^^^^^^^^
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-09-21T08:06:59,723     return any(self)
2023-09-21T08:06:59,723            ^^^^^^^^^
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-09-21T08:06:59,723     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-09-21T08:06:59,723            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-09-21T08:06:59,723     candidate = func()
2023-09-21T08:06:59,723                 ^^^^^^
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-09-21T08:06:59,723     self._link_candidate_cache[link] = LinkCandidate(
2023-09-21T08:06:59,723                                        ^^^^^^^^^^^^^^
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
2023-09-21T08:06:59,723     super().__init__(
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
2023-09-21T08:06:59,723     self.dist = self._prepare()
2023-09-21T08:06:59,723                 ^^^^^^^^^^^^^^^
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
2023-09-21T08:06:59,723     dist = self._prepare_distribution()
2023-09-21T08:06:59,723            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
2023-09-21T08:06:59,723     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-09-21T08:06:59,723            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement
2023-09-21T08:06:59,723     return self._prepare_linked_requirement(req, parallel_builds)
2023-09-21T08:06:59,723            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement
2023-09-21T08:06:59,723     dist = _get_prepared_distribution(
2023-09-21T08:06:59,723            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-09-21T08:06:59,723     abstract_dist.prepare_distribution_metadata(
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-09-21T08:06:59,723     self.req.prepare_metadata()
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata
2023-09-21T08:06:59,723     self.metadata_directory = generate_metadata_legacy(
2023-09-21T08:06:59,723                               ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-21T08:06:59,723   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-09-21T08:06:59,723     raise MetadataGenerationFailed(package_details=details) from error
2023-09-21T08:06:59,723 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-09-21T08:06:59,736 Removed scipion-em-tomo3d==3.1.0 from https://files.pythonhosted.org/packages/6e/7e/a68dc39919161191c35e9bcec3475f69740f49f8f8138499ccfddf0f5f0b/scipion-em-tomo3d-3.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-bchp2f6s'
2023-09-21T08:06:59,737 Removed build tracker: '/tmp/pip-build-tracker-bchp2f6s'