2023-09-21T13:05:21,485 Created temporary directory: /tmp/pip-build-tracker-k7pm8qdx
2023-09-21T13:05:21,486 Initialized build tracking at /tmp/pip-build-tracker-k7pm8qdx
2023-09-21T13:05:21,487 Created build tracker: /tmp/pip-build-tracker-k7pm8qdx
2023-09-21T13:05:21,487 Entered build tracker: /tmp/pip-build-tracker-k7pm8qdx
2023-09-21T13:05:21,488 Created temporary directory: /tmp/pip-wheel-20yjhlnr
2023-09-21T13:05:21,491 Created temporary directory: /tmp/pip-ephem-wheel-cache-01tfumbr
2023-09-21T13:05:21,515 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-21T13:05:21,519 2 location(s) to search for versions of parmed:
2023-09-21T13:05:21,519 * https://pypi.org/simple/parmed/
2023-09-21T13:05:21,519 * https://www.piwheels.org/simple/parmed/
2023-09-21T13:05:21,520 Fetching project page and analyzing links: https://pypi.org/simple/parmed/
2023-09-21T13:05:21,520 Getting page https://pypi.org/simple/parmed/
2023-09-21T13:05:21,522 Found index url https://pypi.org/simple/
2023-09-21T13:05:21,753 Fetched page https://pypi.org/simple/parmed/ as application/vnd.pypi.simple.v1+json
2023-09-21T13:05:21,757   Found link https://files.pythonhosted.org/packages/dd/24/a0d4de0b0ff344795b09fdfcbc0bd3e7207d1554bf5fe20736a78338610d/ParmEd-2.1.10.tar.gz (from https://pypi.org/simple/parmed/), version: 2.1.10
2023-09-21T13:05:21,758   Found link https://files.pythonhosted.org/packages/66/3c/f117d1069a26fd6a8153f3061827ea8b47d4ee99beb43850a93c009d0f38/ParmEd-2.5.0.tar.gz (from https://pypi.org/simple/parmed/), version: 2.5.0
2023-09-21T13:05:21,758   Found link https://files.pythonhosted.org/packages/ee/c3/d59a85593e3bd0ad611567b131211b3d4966f49b9d1ac8ea94eea3c2e78c/ParmEd-2.5.1.tar.gz (from https://pypi.org/simple/parmed/), version: 2.5.1
2023-09-21T13:05:21,759   Found link https://files.pythonhosted.org/packages/61/3b/78c0f325c0e96bbb5caef585ddddf304bbddc91f60f2fd1c4e2de0f49fde/ParmEd-2.7.2.tar.gz (from https://pypi.org/simple/parmed/), version: 2.7.2
2023-09-21T13:05:21,760   Found link https://files.pythonhosted.org/packages/58/1a/b76c7180457602ecc6d2953b1d60e1930217038561e91eedc172eba74b61/ParmEd-2.7.3.tar.gz (from https://pypi.org/simple/parmed/), version: 2.7.3
2023-09-21T13:05:21,760   Found link https://files.pythonhosted.org/packages/6a/93/5e9fee0634f476695b405bf595577ee1e817939b5d6bf58bb55499e57cb9/ParmEd-3.0.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.0
2023-09-21T13:05:21,761   Found link https://files.pythonhosted.org/packages/8a/7a/ae87eed78118f5622c278c94560126bd7d2b849417b0e28c83b1178b2ab6/ParmEd-3.0.1.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.1
2023-09-21T13:05:21,762   Found link https://files.pythonhosted.org/packages/e0/dc/3916a326be85412af07681e151a01bfa3f2d884b97c25ff549b4a3e836a8/ParmEd-3.0.3.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.3
2023-09-21T13:05:21,763   Found link https://files.pythonhosted.org/packages/8b/3e/4f54833855ca64ad5d9667285125c7ce9ae026cb5cc6b7c3f0a643178354/ParmEd-3.1.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.1.0
2023-09-21T13:05:21,763   Found link https://files.pythonhosted.org/packages/ba/a2/d6a9135efd6b1f7d70b79019a2fb2cd1472fceed979e66deaba64e2b641c/ParmEd-3.2.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.2.0
2023-09-21T13:05:21,764   Found link https://files.pythonhosted.org/packages/24/d1/dafba1bdb2f395de37efa51355e093843bb05e7a6dfb5373403ff9af2575/ParmEd-3.4.2.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.2
2023-09-21T13:05:21,765   Found link https://files.pythonhosted.org/packages/56/75/422fa404b42999d6346545b63542d8c1e30f1cc31e5fc884bb7c9a3995c8/ParmEd-3.4.3.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.3
2023-09-21T13:05:21,766   Found link https://files.pythonhosted.org/packages/74/f2/6f19ed34378c32ac1b5304f58bc6e6086e14a725af589c7b3fa35deaff07/ParmEd-3.4.4.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.4
2023-09-21T13:05:21,767   Found link https://files.pythonhosted.org/packages/6b/b6/040189f8ecb7fc2233d408b2c575ca0a1383c2fe6945c3462015c156bae5/ParmEd-4.0.0.tar.gz (from https://pypi.org/simple/parmed/), version: 4.0.0
2023-09-21T13:05:21,768   Found link https://files.pythonhosted.org/packages/dc/85/01007d38fe0945398c5e0ec7c7ce2d9cc433289bf05e32393c8e48e71cd4/ParmEd-4.1.0.tar.gz (from https://pypi.org/simple/parmed/) (requires-python:>=3.8), version: 4.1.0
2023-09-21T13:05:21,769 Fetching project page and analyzing links: https://www.piwheels.org/simple/parmed/
2023-09-21T13:05:21,769 Getting page https://www.piwheels.org/simple/parmed/
2023-09-21T13:05:21,771 Found index url https://www.piwheels.org/simple/
2023-09-21T13:05:36,933 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='www.piwheels.org', port=443): Read timed out. (read timeout=15)")': /simple/parmed/
2023-09-21T13:05:52,634 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='www.piwheels.org', port=443): Read timed out. (read timeout=15)")': /simple/parmed/
2023-09-21T13:06:08,822 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='www.piwheels.org', port=443): Read timed out. (read timeout=15)")': /simple/parmed/
2023-09-21T13:06:16,005 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLZeroReturnError(6, 'TLS/SSL connection has been closed (EOF) (_ssl.c:992)'))': /simple/parmed/
2023-09-21T13:06:25,195 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLZeroReturnError(6, 'TLS/SSL connection has been closed (EOF) (_ssl.c:992)'))': /simple/parmed/
2023-09-21T13:06:40,395 Could not fetch URL https://www.piwheels.org/simple/parmed/: connection error: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/parmed/ (Caused by ReadTimeoutError("HTTPSConnectionPool(host='www.piwheels.org', port=443): Read timed out. (read timeout=15)")) - skipping
2023-09-21T13:06:40,402 Skipping link: not a file: https://www.piwheels.org/simple/parmed/
2023-09-21T13:06:40,403 Skipping link: not a file: https://pypi.org/simple/parmed/
2023-09-21T13:06:40,481 Given no hashes to check 1 links for project 'parmed': discarding no candidates
2023-09-21T13:06:40,499 Collecting parmed==3.4.4
2023-09-21T13:06:40,502   Created temporary directory: /tmp/pip-unpack-7cpipjge
2023-09-21T13:06:40,908   Downloading ParmEd-3.4.4.tar.gz (1.7 MB)
2023-09-21T13:06:41,893   Added parmed==3.4.4 from https://files.pythonhosted.org/packages/74/f2/6f19ed34378c32ac1b5304f58bc6e6086e14a725af589c7b3fa35deaff07/ParmEd-3.4.4.tar.gz to build tracker '/tmp/pip-build-tracker-k7pm8qdx'
2023-09-21T13:06:41,895   Running setup.py (path:/tmp/pip-wheel-20yjhlnr/parmed_902030a2615c4404ad4d741f8cec5f17/setup.py) egg_info for package parmed
2023-09-21T13:06:41,896   Created temporary directory: /tmp/pip-pip-egg-info-hfv11zqx
2023-09-21T13:06:41,896   Preparing metadata (setup.py): started
2023-09-21T13:06:41,898   Running command python setup.py egg_info
2023-09-21T13:06:43,083   running egg_info
2023-09-21T13:06:43,084   creating /tmp/pip-pip-egg-info-hfv11zqx/ParmEd.egg-info
2023-09-21T13:06:43,109   writing /tmp/pip-pip-egg-info-hfv11zqx/ParmEd.egg-info/PKG-INFO
2023-09-21T13:06:43,112   writing dependency_links to /tmp/pip-pip-egg-info-hfv11zqx/ParmEd.egg-info/dependency_links.txt
2023-09-21T13:06:43,113   writing entry points to /tmp/pip-pip-egg-info-hfv11zqx/ParmEd.egg-info/entry_points.txt
2023-09-21T13:06:43,115   writing top-level names to /tmp/pip-pip-egg-info-hfv11zqx/ParmEd.egg-info/top_level.txt
2023-09-21T13:06:43,116   writing manifest file '/tmp/pip-pip-egg-info-hfv11zqx/ParmEd.egg-info/SOURCES.txt'
2023-09-21T13:06:43,186   dependency src/CompatabilityMacros.h won't be automatically included in the manifest: the path doesn't exist
2023-09-21T13:06:43,209   reading manifest file '/tmp/pip-pip-egg-info-hfv11zqx/ParmEd.egg-info/SOURCES.txt'
2023-09-21T13:06:43,211   reading manifest template 'MANIFEST.in'
2023-09-21T13:06:43,232   writing manifest file '/tmp/pip-pip-egg-info-hfv11zqx/ParmEd.egg-info/SOURCES.txt'
2023-09-21T13:06:43,341   Preparing metadata (setup.py): finished with status 'done'
2023-09-21T13:06:43,344   Source in /tmp/pip-wheel-20yjhlnr/parmed_902030a2615c4404ad4d741f8cec5f17 has version 3.4.4, which satisfies requirement parmed==3.4.4 from https://files.pythonhosted.org/packages/74/f2/6f19ed34378c32ac1b5304f58bc6e6086e14a725af589c7b3fa35deaff07/ParmEd-3.4.4.tar.gz
2023-09-21T13:06:43,345   Removed parmed==3.4.4 from https://files.pythonhosted.org/packages/74/f2/6f19ed34378c32ac1b5304f58bc6e6086e14a725af589c7b3fa35deaff07/ParmEd-3.4.4.tar.gz from build tracker '/tmp/pip-build-tracker-k7pm8qdx'
2023-09-21T13:06:43,349 Created temporary directory: /tmp/pip-unpack-hkkngxxe
2023-09-21T13:06:43,350 Created temporary directory: /tmp/pip-unpack-j5219m81
2023-09-21T13:06:43,352 Building wheels for collected packages: parmed
2023-09-21T13:06:43,356   Created temporary directory: /tmp/pip-wheel-i9cynz1g
2023-09-21T13:06:43,357   Building wheel for parmed (setup.py): started
2023-09-21T13:06:43,358   Destination directory: /tmp/pip-wheel-i9cynz1g
2023-09-21T13:06:43,358   Running command python setup.py bdist_wheel
2023-09-21T13:06:44,389   running bdist_wheel
2023-09-21T13:06:44,486   running build
2023-09-21T13:06:44,487   running build_py
2023-09-21T13:06:44,491   creating build
2023-09-21T13:06:44,492   creating build/lib.linux-armv7l-cpython-311
2023-09-21T13:06:44,492   creating build/lib.linux-armv7l-cpython-311/parmed
2023-09-21T13:06:44,493   copying parmed/geometry.py -> build/lib.linux-armv7l-cpython-311/parmed
2023-09-21T13:06:44,496   copying parmed/symmetry.py -> build/lib.linux-armv7l-cpython-311/parmed
2023-09-21T13:06:44,498   copying parmed/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed
2023-09-21T13:06:44,499   copying parmed/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed
2023-09-21T13:06:44,502   copying parmed/_version.py -> build/lib.linux-armv7l-cpython-311/parmed
2023-09-21T13:06:44,503   copying parmed/periodic_table.py -> build/lib.linux-armv7l-cpython-311/parmed
2023-09-21T13:06:44,506   copying parmed/constants.py -> build/lib.linux-armv7l-cpython-311/parmed
2023-09-21T13:06:44,508   copying parmed/exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed
2023-09-21T13:06:44,509   copying parmed/residue.py -> build/lib.linux-armv7l-cpython-311/parmed
2023-09-21T13:06:44,512   copying parmed/vec3.py -> build/lib.linux-armv7l-cpython-311/parmed
2023-09-21T13:06:44,513   copying parmed/scripts.py -> build/lib.linux-armv7l-cpython-311/parmed
2023-09-21T13:06:44,516   copying parmed/topologyobjects.py -> build/lib.linux-armv7l-cpython-311/parmed
2023-09-21T13:06:44,521   copying parmed/structure.py -> build/lib.linux-armv7l-cpython-311/parmed
2023-09-21T13:06:44,527   creating build/lib.linux-armv7l-cpython-311/parmed/amber
2023-09-21T13:06:44,528   copying parmed/amber/mask.py -> build/lib.linux-armv7l-cpython-311/parmed/amber
2023-09-21T13:06:44,530   copying parmed/amber/_amberparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber
2023-09-21T13:06:44,534   copying parmed/amber/readparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber
2023-09-21T13:06:44,536   copying parmed/amber/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/amber
2023-09-21T13:06:44,537   copying parmed/amber/asciicrd.py -> build/lib.linux-armv7l-cpython-311/parmed/amber
2023-09-21T13:06:44,540   copying parmed/amber/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/amber
2023-09-21T13:06:44,542   copying parmed/amber/titratable_residues.py -> build/lib.linux-armv7l-cpython-311/parmed/amber
2023-09-21T13:06:44,546   copying parmed/amber/amberformat.py -> build/lib.linux-armv7l-cpython-311/parmed/amber
2023-09-21T13:06:44,548   copying parmed/amber/netcdffiles.py -> build/lib.linux-armv7l-cpython-311/parmed/amber
2023-09-21T13:06:44,550   copying parmed/amber/_chamberparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber
2023-09-21T13:06:44,553   copying parmed/amber/_tinkerparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber
2023-09-21T13:06:44,556   copying parmed/amber/offlib.py -> build/lib.linux-armv7l-cpython-311/parmed/amber
2023-09-21T13:06:44,559   creating build/lib.linux-armv7l-cpython-311/parmed/modeller
2023-09-21T13:06:44,560   copying parmed/modeller/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller
2023-09-21T13:06:44,561   copying parmed/modeller/residue.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller
2023-09-21T13:06:44,564   copying parmed/modeller/standardtemplates.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller
2023-09-21T13:06:44,566   creating build/lib.linux-armv7l-cpython-311/parmed/tinker
2023-09-21T13:06:44,567   copying parmed/tinker/parameterfile.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker
2023-09-21T13:06:44,569   copying parmed/tinker/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker
2023-09-21T13:06:44,571   copying parmed/tinker/system.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker
2023-09-21T13:06:44,573   copying parmed/tinker/tinkerfiles.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker
2023-09-21T13:06:44,575   copying parmed/tinker/topologyobjects.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker
2023-09-21T13:06:44,578   creating build/lib.linux-armv7l-cpython-311/parmed/unit
2023-09-21T13:06:44,579   copying parmed/unit/unit.py -> build/lib.linux-armv7l-cpython-311/parmed/unit
2023-09-21T13:06:44,582   copying parmed/unit/standard_dimensions.py -> build/lib.linux-armv7l-cpython-311/parmed/unit
2023-09-21T13:06:44,584   copying parmed/unit/mymatrix.py -> build/lib.linux-armv7l-cpython-311/parmed/unit
2023-09-21T13:06:44,586   copying parmed/unit/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/unit
2023-09-21T13:06:44,588   copying parmed/unit/unit_math.py -> build/lib.linux-armv7l-cpython-311/parmed/unit
2023-09-21T13:06:44,590   copying parmed/unit/constants.py -> build/lib.linux-armv7l-cpython-311/parmed/unit
2023-09-21T13:06:44,591   copying parmed/unit/unit_definitions.py -> build/lib.linux-armv7l-cpython-311/parmed/unit
2023-09-21T13:06:44,594   copying parmed/unit/quantity.py -> build/lib.linux-armv7l-cpython-311/parmed/unit
2023-09-21T13:06:44,596   copying parmed/unit/unit_operators.py -> build/lib.linux-armv7l-cpython-311/parmed/unit
2023-09-21T13:06:44,598   copying parmed/unit/baseunit.py -> build/lib.linux-armv7l-cpython-311/parmed/unit
2023-09-21T13:06:44,600   copying parmed/unit/basedimension.py -> build/lib.linux-armv7l-cpython-311/parmed/unit
2023-09-21T13:06:44,602   copying parmed/unit/prefix.py -> build/lib.linux-armv7l-cpython-311/parmed/unit
2023-09-21T13:06:44,605   creating build/lib.linux-armv7l-cpython-311/parmed/amber/mdin
2023-09-21T13:06:44,606   copying parmed/amber/mdin/mdin.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin
2023-09-21T13:06:44,608   copying parmed/amber/mdin/rism.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin
2023-09-21T13:06:44,610   copying parmed/amber/mdin/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin
2023-09-21T13:06:44,611   copying parmed/amber/mdin/pb.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin
2023-09-21T13:06:44,613   copying parmed/amber/mdin/ewald.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin
2023-09-21T13:06:44,615   copying parmed/amber/mdin/qmmm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin
2023-09-21T13:06:44,616   copying parmed/amber/mdin/cntrl.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin
2023-09-21T13:06:44,619   creating build/lib.linux-armv7l-cpython-311/parmed/charmm
2023-09-21T13:06:44,620   copying parmed/charmm/charmmcrds.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm
2023-09-21T13:06:44,622   copying parmed/charmm/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm
2023-09-21T13:06:44,624   copying parmed/charmm/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm
2023-09-21T13:06:44,627   copying parmed/charmm/psf.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm
2023-09-21T13:06:44,629   copying parmed/charmm/_charmmfile.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm
2023-09-21T13:06:44,632   creating build/lib.linux-armv7l-cpython-311/parmed/formats
2023-09-21T13:06:44,632   creating build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx
2023-09-21T13:06:44,633   copying parmed/formats/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx
2023-09-21T13:06:44,635   copying parmed/formats/pdbx/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx
2023-09-21T13:06:44,637   copying parmed/formats/pdbx/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx
2023-09-21T13:06:44,639   copying parmed/formats/pdbx/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx
2023-09-21T13:06:44,642   creating build/lib.linux-armv7l-cpython-311/parmed/rosetta
2023-09-21T13:06:44,643   copying parmed/rosetta/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/rosetta
2023-09-21T13:06:44,644   copying parmed/rosetta/pose.py -> build/lib.linux-armv7l-cpython-311/parmed/rosetta
2023-09-21T13:06:44,646   creating build/lib.linux-armv7l-cpython-311/parmed/rdkit
2023-09-21T13:06:44,648   copying parmed/rdkit/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/rdkit
2023-09-21T13:06:44,649   copying parmed/rdkit/rdkit.py -> build/lib.linux-armv7l-cpython-311/parmed/rdkit
2023-09-21T13:06:44,651   copying parmed/formats/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/formats
2023-09-21T13:06:44,653   copying parmed/formats/pqr.py -> build/lib.linux-armv7l-cpython-311/parmed/formats
2023-09-21T13:06:44,655   copying parmed/formats/sdf.py -> build/lib.linux-armv7l-cpython-311/parmed/formats
2023-09-21T13:06:44,657   copying parmed/formats/psf.py -> build/lib.linux-armv7l-cpython-311/parmed/formats
2023-09-21T13:06:44,659   copying parmed/formats/mol2.py -> build/lib.linux-armv7l-cpython-311/parmed/formats
2023-09-21T13:06:44,661   copying parmed/formats/registry.py -> build/lib.linux-armv7l-cpython-311/parmed/formats
2023-09-21T13:06:44,663   copying parmed/formats/pdb.py -> build/lib.linux-armv7l-cpython-311/parmed/formats
2023-09-21T13:06:44,667   creating build/lib.linux-armv7l-cpython-311/parmed/utils
2023-09-21T13:06:44,668   creating build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat
2023-09-21T13:06:44,669   copying parmed/utils/fortranformat/_lexer.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat
2023-09-21T13:06:44,671   copying parmed/utils/fortranformat/_output.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat
2023-09-21T13:06:44,674   copying parmed/utils/fortranformat/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat
2023-09-21T13:06:44,675   copying parmed/utils/fortranformat/FortranRecordWriter.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat
2023-09-21T13:06:44,677   copying parmed/utils/fortranformat/_input.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat
2023-09-21T13:06:44,679   copying parmed/utils/fortranformat/_parser.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat
2023-09-21T13:06:44,681   copying parmed/utils/fortranformat/_exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat
2023-09-21T13:06:44,683   copying parmed/utils/fortranformat/FortranRecordReader.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat
2023-09-21T13:06:44,685   copying parmed/utils/fortranformat/_misc.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat
2023-09-21T13:06:44,686   copying parmed/utils/fortranformat/_edit_descriptors.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat
2023-09-21T13:06:44,688   copying parmed/utils/fortranformat/config.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat
2023-09-21T13:06:44,691   creating build/lib.linux-armv7l-cpython-311/parmed/openmm
2023-09-21T13:06:44,692   copying parmed/openmm/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm
2023-09-21T13:06:44,693   copying parmed/openmm/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm
2023-09-21T13:06:44,696   copying parmed/openmm/topsystem.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm
2023-09-21T13:06:44,698   copying parmed/openmm/utils.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm
2023-09-21T13:06:44,700   copying parmed/openmm/xmlfile.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm
2023-09-21T13:06:44,702   copying parmed/openmm/reporters.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm
2023-09-21T13:06:44,705   copying parmed/utils/netcdf.py -> build/lib.linux-armv7l-cpython-311/parmed/utils
2023-09-21T13:06:44,708   copying parmed/utils/pairlist.py -> build/lib.linux-armv7l-cpython-311/parmed/utils
2023-09-21T13:06:44,709   copying parmed/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/utils
2023-09-21T13:06:44,711   copying parmed/utils/six.py -> build/lib.linux-armv7l-cpython-311/parmed/utils
2023-09-21T13:06:44,714   copying parmed/utils/pandautils.py -> build/lib.linux-armv7l-cpython-311/parmed/utils
2023-09-21T13:06:44,716   copying parmed/utils/timer.py -> build/lib.linux-armv7l-cpython-311/parmed/utils
2023-09-21T13:06:44,718   copying parmed/utils/decorators.py -> build/lib.linux-armv7l-cpython-311/parmed/utils
2023-09-21T13:06:44,720   copying parmed/utils/io.py -> build/lib.linux-armv7l-cpython-311/parmed/utils
2023-09-21T13:06:44,723   creating build/lib.linux-armv7l-cpython-311/parmed/gromacs
2023-09-21T13:06:44,724   copying parmed/gromacs/_cpp.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs
2023-09-21T13:06:44,727   copying parmed/gromacs/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs
2023-09-21T13:06:44,728   copying parmed/gromacs/_gromacsfile.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs
2023-09-21T13:06:44,730   copying parmed/gromacs/gromacsgro.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs
2023-09-21T13:06:44,733   copying parmed/gromacs/gromacstop.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs
2023-09-21T13:06:44,737   creating build/lib.linux-armv7l-cpython-311/parmed/tools
2023-09-21T13:06:44,738   copying parmed/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools
2023-09-21T13:06:44,740   copying parmed/tools/coarsegrain.py -> build/lib.linux-armv7l-cpython-311/parmed/tools
2023-09-21T13:06:44,742   copying parmed/tools/logos.py -> build/lib.linux-armv7l-cpython-311/parmed/tools
2023-09-21T13:06:44,744   copying parmed/tools/exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools
2023-09-21T13:06:44,746   copying parmed/tools/addljtype.py -> build/lib.linux-armv7l-cpython-311/parmed/tools
2023-09-21T13:06:44,748   copying parmed/tools/add1264.py -> build/lib.linux-armv7l-cpython-311/parmed/tools
2023-09-21T13:06:44,751   copying parmed/tools/parmlist.py -> build/lib.linux-armv7l-cpython-311/parmed/tools
2023-09-21T13:06:44,753   copying parmed/tools/checkvalidity.py -> build/lib.linux-armv7l-cpython-311/parmed/tools
2023-09-21T13:06:44,755   copying parmed/tools/actions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools
2023-09-21T13:06:44,760   copying parmed/tools/argumentlist.py -> build/lib.linux-armv7l-cpython-311/parmed/tools
2023-09-21T13:06:44,763   copying parmed/tools/parmed_cmd.py -> build/lib.linux-armv7l-cpython-311/parmed/tools
2023-09-21T13:06:44,765   copying parmed/tools/changeradii.py -> build/lib.linux-armv7l-cpython-311/parmed/tools
2023-09-21T13:06:44,769   creating build/lib.linux-armv7l-cpython-311/parmed/namd
2023-09-21T13:06:44,770   copying parmed/namd/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/namd
2023-09-21T13:06:44,772   copying parmed/namd/namdbinfiles.py -> build/lib.linux-armv7l-cpython-311/parmed/namd
2023-09-21T13:06:44,774   creating build/lib.linux-armv7l-cpython-311/parmed/tools/gui
2023-09-21T13:06:44,775   copying parmed/tools/gui/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui
2023-09-21T13:06:44,777   copying parmed/tools/gui/guifiletools.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui
2023-09-21T13:06:44,779   copying parmed/tools/gui/guiactions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui
2023-09-21T13:06:44,781   copying parmed/tools/gui/guitools.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui
2023-09-21T13:06:44,783   copying parmed/tools/gui/_guiactions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui
2023-09-21T13:06:44,786   copying parmed/tools/gui/_guiwidgets.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui
2023-09-21T13:06:44,788   creating build/lib.linux-armv7l-cpython-311/parmed/tools/simulations
2023-09-21T13:06:44,789   copying parmed/tools/simulations/openmm.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations
2023-09-21T13:06:44,792   copying parmed/tools/simulations/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations
2023-09-21T13:06:44,794   copying parmed/tools/simulations/sanderapi.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations
2023-09-21T13:06:44,798   creating build/lib.linux-armv7l-cpython-311/parmed/modeller/data
2023-09-21T13:06:44,799   copying parmed/modeller/data/standard_residues.lib -> build/lib.linux-armv7l-cpython-311/parmed/modeller/data
2023-09-21T13:06:44,813   UPDATING build/lib.linux-armv7l-cpython-311/parmed/_version.py
2023-09-21T13:06:44,814   set build/lib.linux-armv7l-cpython-311/parmed/_version.py to '3.4.4'
2023-09-21T13:06:44,815   running build_ext
2023-09-21T13:06:45,324   building 'parmed.amber._rdparm' extension
2023-09-21T13:06:45,324   creating build/temp.linux-armv7l-cpython-311
2023-09-21T13:06:45,325   creating build/temp.linux-armv7l-cpython-311/src
2023-09-21T13:06:45,326   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-20yjhlnr/parmed_902030a2615c4404ad4d741f8cec5f17/src -I/usr/include/python3.11 -c src/_rdparm.cpp -o build/temp.linux-armv7l-cpython-311/src/_rdparm.o
2023-09-21T13:06:51,044   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-20yjhlnr/parmed_902030a2615c4404ad4d741f8cec5f17/src -I/usr/include/python3.11 -c src/readparm.cpp -o build/temp.linux-armv7l-cpython-311/src/readparm.o
2023-09-21T13:06:54,218   In file included from /usr/include/c++/12/vector:70,
2023-09-21T13:06:54,219                    from src/readparm.h:8,
2023-09-21T13:06:54,220                    from src/readparm.cpp:10:
2023-09-21T13:06:54,220   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ParmData&}; _Tp = ParmData; _Alloc = std::allocator<ParmData>]’:
2023-09-21T13:06:54,221   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ParmData>::iterator’ changed in GCC 7.1
2023-09-21T13:06:54,222     439 |       vector<_Tp, _Alloc>::
2023-09-21T13:06:54,222         |       ^~~~~~~~~~~~~~~~~~~
2023-09-21T13:06:55,308   src/readparm.cpp: In function ‘ExitStatus readparm(const std::string&, std::vector<std::__cxx11::basic_string<char> >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’:
2023-09-21T13:06:55,309   src/readparm.cpp:143:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound 8 equals destination size [-Wstringop-truncation]
2023-09-21T13:06:55,310     143 |                     strncpy(d.c, word.c_str(), MAX_HOLLERITH_SIZE);
2023-09-21T13:06:55,310         |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-21T13:06:55,437   In file included from /usr/include/c++/12/vector:64:
2023-09-21T13:06:55,438   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator<ParmData>]’,
2023-09-21T13:06:55,439       inlined from ‘ExitStatus readparm(const std::string&, std::vector<std::__cxx11::basic_string<char> >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:128:48:
2023-09-21T13:06:55,440   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ParmData*, std::vector<ParmData> >’ changed in GCC 7.1
2023-09-21T13:06:55,440    1287 |           _M_realloc_insert(end(), __x);
2023-09-21T13:06:55,441         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-21T13:06:55,441   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator<ParmData>]’,
2023-09-21T13:06:55,442       inlined from ‘ExitStatus readparm(const std::string&, std::vector<std::__cxx11::basic_string<char> >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:135:48:
2023-09-21T13:06:55,442   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ParmData*, std::vector<ParmData> >’ changed in GCC 7.1
2023-09-21T13:06:55,443    1287 |           _M_realloc_insert(end(), __x);
2023-09-21T13:06:55,444         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-21T13:06:55,445   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator<ParmData>]’,
2023-09-21T13:06:55,446       inlined from ‘ExitStatus readparm(const std::string&, std::vector<std::__cxx11::basic_string<char> >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:144:48:
2023-09-21T13:06:55,446   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ParmData*, std::vector<ParmData> >’ changed in GCC 7.1
2023-09-21T13:06:55,447    1287 |           _M_realloc_insert(end(), __x);
2023-09-21T13:06:55,448         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-21T13:06:57,227   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/_rdparm.o build/temp.linux-armv7l-cpython-311/src/readparm.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so
2023-09-21T13:06:57,537   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-21T13:06:57,537   !!

2023-09-21T13:06:57,539           ********************************************************************************
2023-09-21T13:06:57,539           Please avoid running ``setup.py`` directly.
2023-09-21T13:06:57,540           Instead, use pypa/build, pypa/installer or other
2023-09-21T13:06:57,540           standards-based tools.

2023-09-21T13:06:57,541           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-21T13:06:57,542           ********************************************************************************

2023-09-21T13:06:57,543   !!
2023-09-21T13:06:57,543     self.initialize_options()
2023-09-21T13:06:57,565   installing to build/bdist.linux-armv7l/wheel
2023-09-21T13:06:57,566   running install
2023-09-21T13:06:57,590   running install_lib
2023-09-21T13:06:57,614   creating build/bdist.linux-armv7l
2023-09-21T13:06:57,614   creating build/bdist.linux-armv7l/wheel
2023-09-21T13:06:57,616   creating build/bdist.linux-armv7l/wheel/parmed
2023-09-21T13:06:57,618   creating build/bdist.linux-armv7l/wheel/parmed/utils
2023-09-21T13:06:57,619   copying build/lib.linux-armv7l-cpython-311/parmed/utils/netcdf.py -> build/bdist.linux-armv7l/wheel/parmed/utils
2023-09-21T13:06:57,622   copying build/lib.linux-armv7l-cpython-311/parmed/utils/pairlist.py -> build/bdist.linux-armv7l/wheel/parmed/utils
2023-09-21T13:06:57,624   copying build/lib.linux-armv7l-cpython-311/parmed/utils/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/utils
2023-09-21T13:06:57,626   copying build/lib.linux-armv7l-cpython-311/parmed/utils/six.py -> build/bdist.linux-armv7l/wheel/parmed/utils
2023-09-21T13:06:57,629   copying build/lib.linux-armv7l-cpython-311/parmed/utils/pandautils.py -> build/bdist.linux-armv7l/wheel/parmed/utils
2023-09-21T13:06:57,631   copying build/lib.linux-armv7l-cpython-311/parmed/utils/timer.py -> build/bdist.linux-armv7l/wheel/parmed/utils
2023-09-21T13:06:57,633   copying build/lib.linux-armv7l-cpython-311/parmed/utils/decorators.py -> build/bdist.linux-armv7l/wheel/parmed/utils
2023-09-21T13:06:57,635   copying build/lib.linux-armv7l-cpython-311/parmed/utils/io.py -> build/bdist.linux-armv7l/wheel/parmed/utils
2023-09-21T13:06:57,637   creating build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2023-09-21T13:06:57,638   copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_lexer.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2023-09-21T13:06:57,640   copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_output.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2023-09-21T13:06:57,643   copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2023-09-21T13:06:57,644   copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/FortranRecordWriter.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2023-09-21T13:06:57,646   copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_input.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2023-09-21T13:06:57,649   copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_parser.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2023-09-21T13:06:57,651   copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_exceptions.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2023-09-21T13:06:57,653   copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/FortranRecordReader.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2023-09-21T13:06:57,655   copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_misc.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2023-09-21T13:06:57,657   copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_edit_descriptors.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2023-09-21T13:06:57,659   copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/config.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2023-09-21T13:06:57,661   copying build/lib.linux-armv7l-cpython-311/parmed/geometry.py -> build/bdist.linux-armv7l/wheel/parmed
2023-09-21T13:06:57,663   copying build/lib.linux-armv7l-cpython-311/parmed/symmetry.py -> build/bdist.linux-armv7l/wheel/parmed
2023-09-21T13:06:57,665   copying build/lib.linux-armv7l-cpython-311/parmed/__init__.py -> build/bdist.linux-armv7l/wheel/parmed
2023-09-21T13:06:57,667   copying build/lib.linux-armv7l-cpython-311/parmed/parameters.py -> build/bdist.linux-armv7l/wheel/parmed
2023-09-21T13:06:57,670   copying build/lib.linux-armv7l-cpython-311/parmed/_version.py -> build/bdist.linux-armv7l/wheel/parmed
2023-09-21T13:06:57,672   copying build/lib.linux-armv7l-cpython-311/parmed/periodic_table.py -> build/bdist.linux-armv7l/wheel/parmed
2023-09-21T13:06:57,674   copying build/lib.linux-armv7l-cpython-311/parmed/constants.py -> build/bdist.linux-armv7l/wheel/parmed
2023-09-21T13:06:57,677   creating build/bdist.linux-armv7l/wheel/parmed/tinker
2023-09-21T13:06:57,678   copying build/lib.linux-armv7l-cpython-311/parmed/tinker/parameterfile.py -> build/bdist.linux-armv7l/wheel/parmed/tinker
2023-09-21T13:06:57,680   copying build/lib.linux-armv7l-cpython-311/parmed/tinker/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tinker
2023-09-21T13:06:57,682   copying build/lib.linux-armv7l-cpython-311/parmed/tinker/system.py -> build/bdist.linux-armv7l/wheel/parmed/tinker
2023-09-21T13:06:57,685   copying build/lib.linux-armv7l-cpython-311/parmed/tinker/tinkerfiles.py -> build/bdist.linux-armv7l/wheel/parmed/tinker
2023-09-21T13:06:57,688   copying build/lib.linux-armv7l-cpython-311/parmed/tinker/topologyobjects.py -> build/bdist.linux-armv7l/wheel/parmed/tinker
2023-09-21T13:06:57,691   creating build/bdist.linux-armv7l/wheel/parmed/modeller
2023-09-21T13:06:57,692   copying build/lib.linux-armv7l-cpython-311/parmed/modeller/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/modeller
2023-09-21T13:06:57,693   copying build/lib.linux-armv7l-cpython-311/parmed/modeller/residue.py -> build/bdist.linux-armv7l/wheel/parmed/modeller
2023-09-21T13:06:57,697   copying build/lib.linux-armv7l-cpython-311/parmed/modeller/standardtemplates.py -> build/bdist.linux-armv7l/wheel/parmed/modeller
2023-09-21T13:06:57,699   creating build/bdist.linux-armv7l/wheel/parmed/modeller/data
2023-09-21T13:06:57,700   copying build/lib.linux-armv7l-cpython-311/parmed/modeller/data/standard_residues.lib -> build/bdist.linux-armv7l/wheel/parmed/modeller/data
2023-09-21T13:06:57,706   creating build/bdist.linux-armv7l/wheel/parmed/amber
2023-09-21T13:06:57,706   copying build/lib.linux-armv7l-cpython-311/parmed/amber/mask.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2023-09-21T13:06:57,709   copying build/lib.linux-armv7l-cpython-311/parmed/amber/_amberparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2023-09-21T13:06:57,714   copying build/lib.linux-armv7l-cpython-311/parmed/amber/readparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2023-09-21T13:06:57,716   copying build/lib.linux-armv7l-cpython-311/parmed/amber/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2023-09-21T13:06:57,718   copying build/lib.linux-armv7l-cpython-311/parmed/amber/asciicrd.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2023-09-21T13:06:57,720   copying build/lib.linux-armv7l-cpython-311/parmed/amber/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2023-09-21T13:06:57,723   copying build/lib.linux-armv7l-cpython-311/parmed/amber/titratable_residues.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2023-09-21T13:06:57,727   copying build/lib.linux-armv7l-cpython-311/parmed/amber/amberformat.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2023-09-21T13:06:57,730   copying build/lib.linux-armv7l-cpython-311/parmed/amber/netcdffiles.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2023-09-21T13:06:57,733   creating build/bdist.linux-armv7l/wheel/parmed/amber/mdin
2023-09-21T13:06:57,734   copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/mdin.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin
2023-09-21T13:06:57,737   copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/rism.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin
2023-09-21T13:06:57,739   copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin
2023-09-21T13:06:57,741   copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/pb.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin
2023-09-21T13:06:57,743   copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/ewald.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin
2023-09-21T13:06:57,745   copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/qmmm.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin
2023-09-21T13:06:57,747   copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/cntrl.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin
2023-09-21T13:06:57,750   copying build/lib.linux-armv7l-cpython-311/parmed/amber/_chamberparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2023-09-21T13:06:57,753   copying build/lib.linux-armv7l-cpython-311/parmed/amber/_tinkerparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2023-09-21T13:06:57,756   copying build/lib.linux-armv7l-cpython-311/parmed/amber/offlib.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2023-09-21T13:06:57,759   copying build/lib.linux-armv7l-cpython-311/parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/parmed/amber
2023-09-21T13:06:57,775   creating build/bdist.linux-armv7l/wheel/parmed/rosetta
2023-09-21T13:06:57,776   copying build/lib.linux-armv7l-cpython-311/parmed/rosetta/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/rosetta
2023-09-21T13:06:57,778   copying build/lib.linux-armv7l-cpython-311/parmed/rosetta/pose.py -> build/bdist.linux-armv7l/wheel/parmed/rosetta
2023-09-21T13:06:57,779   copying build/lib.linux-armv7l-cpython-311/parmed/exceptions.py -> build/bdist.linux-armv7l/wheel/parmed
2023-09-21T13:06:57,781   copying build/lib.linux-armv7l-cpython-311/parmed/residue.py -> build/bdist.linux-armv7l/wheel/parmed
2023-09-21T13:06:57,784   creating build/bdist.linux-armv7l/wheel/parmed/tools
2023-09-21T13:06:57,785   creating build/bdist.linux-armv7l/wheel/parmed/tools/simulations
2023-09-21T13:06:57,786   copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/openmm.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations
2023-09-21T13:06:57,790   copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations
2023-09-21T13:06:57,791   copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/sanderapi.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations
2023-09-21T13:06:57,794   copying build/lib.linux-armv7l-cpython-311/parmed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2023-09-21T13:06:57,795   copying build/lib.linux-armv7l-cpython-311/parmed/tools/coarsegrain.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2023-09-21T13:06:57,798   copying build/lib.linux-armv7l-cpython-311/parmed/tools/logos.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2023-09-21T13:06:57,800   copying build/lib.linux-armv7l-cpython-311/parmed/tools/exceptions.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2023-09-21T13:06:57,802   copying build/lib.linux-armv7l-cpython-311/parmed/tools/addljtype.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2023-09-21T13:06:57,804   copying build/lib.linux-armv7l-cpython-311/parmed/tools/add1264.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2023-09-21T13:06:57,807   copying build/lib.linux-armv7l-cpython-311/parmed/tools/parmlist.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2023-09-21T13:06:57,809   copying build/lib.linux-armv7l-cpython-311/parmed/tools/checkvalidity.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2023-09-21T13:06:57,811   copying build/lib.linux-armv7l-cpython-311/parmed/tools/actions.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2023-09-21T13:06:57,818   copying build/lib.linux-armv7l-cpython-311/parmed/tools/argumentlist.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2023-09-21T13:06:57,820   copying build/lib.linux-armv7l-cpython-311/parmed/tools/parmed_cmd.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2023-09-21T13:06:57,823   copying build/lib.linux-armv7l-cpython-311/parmed/tools/changeradii.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2023-09-21T13:06:57,826   creating build/bdist.linux-armv7l/wheel/parmed/tools/gui
2023-09-21T13:06:57,827   copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui
2023-09-21T13:06:57,829   copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guifiletools.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui
2023-09-21T13:06:57,831   copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guiactions.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui
2023-09-21T13:06:57,833   copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guitools.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui
2023-09-21T13:06:57,835   copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/_guiactions.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui
2023-09-21T13:06:57,839   copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/_guiwidgets.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui
2023-09-21T13:06:57,842   creating build/bdist.linux-armv7l/wheel/parmed/namd
2023-09-21T13:06:57,843   copying build/lib.linux-armv7l-cpython-311/parmed/namd/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/namd
2023-09-21T13:06:57,845   copying build/lib.linux-armv7l-cpython-311/parmed/namd/namdbinfiles.py -> build/bdist.linux-armv7l/wheel/parmed/namd
2023-09-21T13:06:57,847   copying build/lib.linux-armv7l-cpython-311/parmed/vec3.py -> build/bdist.linux-armv7l/wheel/parmed
2023-09-21T13:06:57,849   creating build/bdist.linux-armv7l/wheel/parmed/gromacs
2023-09-21T13:06:57,850   copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/_cpp.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs
2023-09-21T13:06:57,853   copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs
2023-09-21T13:06:57,854   copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/_gromacsfile.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs
2023-09-21T13:06:57,856   copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/gromacsgro.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs
2023-09-21T13:06:57,859   copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/gromacstop.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs
2023-09-21T13:06:57,863   creating build/bdist.linux-armv7l/wheel/parmed/openmm
2023-09-21T13:06:57,864   copying build/lib.linux-armv7l-cpython-311/parmed/openmm/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/openmm
2023-09-21T13:06:57,866   copying build/lib.linux-armv7l-cpython-311/parmed/openmm/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/openmm
2023-09-21T13:06:57,869   copying build/lib.linux-armv7l-cpython-311/parmed/openmm/topsystem.py -> build/bdist.linux-armv7l/wheel/parmed/openmm
2023-09-21T13:06:57,871   copying build/lib.linux-armv7l-cpython-311/parmed/openmm/utils.py -> build/bdist.linux-armv7l/wheel/parmed/openmm
2023-09-21T13:06:57,873   copying build/lib.linux-armv7l-cpython-311/parmed/openmm/xmlfile.py -> build/bdist.linux-armv7l/wheel/parmed/openmm
2023-09-21T13:06:57,876   copying build/lib.linux-armv7l-cpython-311/parmed/openmm/reporters.py -> build/bdist.linux-armv7l/wheel/parmed/openmm
2023-09-21T13:06:57,879   creating build/bdist.linux-armv7l/wheel/parmed/unit
2023-09-21T13:06:57,880   copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2023-09-21T13:06:57,883   copying build/lib.linux-armv7l-cpython-311/parmed/unit/standard_dimensions.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2023-09-21T13:06:57,885   copying build/lib.linux-armv7l-cpython-311/parmed/unit/mymatrix.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2023-09-21T13:06:57,888   copying build/lib.linux-armv7l-cpython-311/parmed/unit/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2023-09-21T13:06:57,890   copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_math.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2023-09-21T13:06:57,892   copying build/lib.linux-armv7l-cpython-311/parmed/unit/constants.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2023-09-21T13:06:57,894   copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_definitions.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2023-09-21T13:06:57,897   copying build/lib.linux-armv7l-cpython-311/parmed/unit/quantity.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2023-09-21T13:06:57,903   copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_operators.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2023-09-21T13:06:57,905   copying build/lib.linux-armv7l-cpython-311/parmed/unit/baseunit.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2023-09-21T13:06:57,908   copying build/lib.linux-armv7l-cpython-311/parmed/unit/basedimension.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2023-09-21T13:06:57,910   copying build/lib.linux-armv7l-cpython-311/parmed/unit/prefix.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2023-09-21T13:06:57,912   copying build/lib.linux-armv7l-cpython-311/parmed/scripts.py -> build/bdist.linux-armv7l/wheel/parmed
2023-09-21T13:06:57,915   creating build/bdist.linux-armv7l/wheel/parmed/charmm
2023-09-21T13:06:57,916   copying build/lib.linux-armv7l-cpython-311/parmed/charmm/charmmcrds.py -> build/bdist.linux-armv7l/wheel/parmed/charmm
2023-09-21T13:06:57,918   copying build/lib.linux-armv7l-cpython-311/parmed/charmm/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/charmm
2023-09-21T13:06:57,920   copying build/lib.linux-armv7l-cpython-311/parmed/charmm/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/charmm
2023-09-21T13:06:57,924   copying build/lib.linux-armv7l-cpython-311/parmed/charmm/psf.py -> build/bdist.linux-armv7l/wheel/parmed/charmm
2023-09-21T13:06:57,926   copying build/lib.linux-armv7l-cpython-311/parmed/charmm/_charmmfile.py -> build/bdist.linux-armv7l/wheel/parmed/charmm
2023-09-21T13:06:57,929   copying build/lib.linux-armv7l-cpython-311/parmed/topologyobjects.py -> build/bdist.linux-armv7l/wheel/parmed
2023-09-21T13:06:57,936   creating build/bdist.linux-armv7l/wheel/parmed/formats
2023-09-21T13:06:57,937   copying build/lib.linux-armv7l-cpython-311/parmed/formats/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/formats
2023-09-21T13:06:57,939   copying build/lib.linux-armv7l-cpython-311/parmed/formats/pqr.py -> build/bdist.linux-armv7l/wheel/parmed/formats
2023-09-21T13:06:57,942   creating build/bdist.linux-armv7l/wheel/parmed/formats/pdbx
2023-09-21T13:06:57,943   copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx
2023-09-21T13:06:57,945   copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx
2023-09-21T13:06:57,947   copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxReader.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx
2023-09-21T13:06:57,950   copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx
2023-09-21T13:06:57,953   copying build/lib.linux-armv7l-cpython-311/parmed/formats/sdf.py -> build/bdist.linux-armv7l/wheel/parmed/formats
2023-09-21T13:06:57,955   copying build/lib.linux-armv7l-cpython-311/parmed/formats/psf.py -> build/bdist.linux-armv7l/wheel/parmed/formats
2023-09-21T13:06:57,957   copying build/lib.linux-armv7l-cpython-311/parmed/formats/mol2.py -> build/bdist.linux-armv7l/wheel/parmed/formats
2023-09-21T13:06:57,960   copying build/lib.linux-armv7l-cpython-311/parmed/formats/registry.py -> build/bdist.linux-armv7l/wheel/parmed/formats
2023-09-21T13:06:57,962   copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdb.py -> build/bdist.linux-armv7l/wheel/parmed/formats
2023-09-21T13:06:57,966   creating build/bdist.linux-armv7l/wheel/parmed/rdkit
2023-09-21T13:06:57,967   copying build/lib.linux-armv7l-cpython-311/parmed/rdkit/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/rdkit
2023-09-21T13:06:57,969   copying build/lib.linux-armv7l-cpython-311/parmed/rdkit/rdkit.py -> build/bdist.linux-armv7l/wheel/parmed/rdkit
2023-09-21T13:06:57,971   copying build/lib.linux-armv7l-cpython-311/parmed/structure.py -> build/bdist.linux-armv7l/wheel/parmed
2023-09-21T13:06:57,977   running install_egg_info
2023-09-21T13:06:58,039   running egg_info
2023-09-21T13:06:58,063   writing ParmEd.egg-info/PKG-INFO
2023-09-21T13:06:58,066   writing dependency_links to ParmEd.egg-info/dependency_links.txt
2023-09-21T13:06:58,068   writing entry points to ParmEd.egg-info/entry_points.txt
2023-09-21T13:06:58,069   writing top-level names to ParmEd.egg-info/top_level.txt
2023-09-21T13:06:58,107   dependency src/CompatabilityMacros.h won't be automatically included in the manifest: the path doesn't exist
2023-09-21T13:06:58,132   reading manifest file 'ParmEd.egg-info/SOURCES.txt'
2023-09-21T13:06:58,141   reading manifest template 'MANIFEST.in'
2023-09-21T13:06:58,163   writing manifest file 'ParmEd.egg-info/SOURCES.txt'
2023-09-21T13:06:58,165   Copying ParmEd.egg-info to build/bdist.linux-armv7l/wheel/ParmEd-3.4.4-py3.11.egg-info
2023-09-21T13:06:58,176   running install_scripts
2023-09-21T13:06:58,227   creating build/bdist.linux-armv7l/wheel/ParmEd-3.4.4.dist-info/WHEEL
2023-09-21T13:06:58,229   creating '/tmp/pip-wheel-i9cynz1g/ParmEd-3.4.4-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-21T13:06:58,233   adding 'parmed/__init__.py'
2023-09-21T13:06:58,234   adding 'parmed/_version.py'
2023-09-21T13:06:58,235   adding 'parmed/constants.py'
2023-09-21T13:06:58,237   adding 'parmed/exceptions.py'
2023-09-21T13:06:58,239   adding 'parmed/geometry.py'
2023-09-21T13:06:58,242   adding 'parmed/parameters.py'
2023-09-21T13:06:58,245   adding 'parmed/periodic_table.py'
2023-09-21T13:06:58,247   adding 'parmed/residue.py'
2023-09-21T13:06:58,249   adding 'parmed/scripts.py'
2023-09-21T13:06:58,269   adding 'parmed/structure.py'
2023-09-21T13:06:58,271   adding 'parmed/symmetry.py'
2023-09-21T13:06:58,292   adding 'parmed/topologyobjects.py'
2023-09-21T13:06:58,295   adding 'parmed/vec3.py'
2023-09-21T13:06:58,297   adding 'parmed/amber/__init__.py'
2023-09-21T13:06:58,308   adding 'parmed/amber/_amberparm.py'
2023-09-21T13:06:58,313   adding 'parmed/amber/_chamberparm.py'
2023-09-21T13:06:58,474   adding 'parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so'
2023-09-21T13:06:58,486   adding 'parmed/amber/_tinkerparm.py'
2023-09-21T13:06:58,491   adding 'parmed/amber/amberformat.py'
2023-09-21T13:06:58,494   adding 'parmed/amber/asciicrd.py'
2023-09-21T13:06:58,497   adding 'parmed/amber/mask.py'
2023-09-21T13:06:58,500   adding 'parmed/amber/netcdffiles.py'
2023-09-21T13:06:58,504   adding 'parmed/amber/offlib.py'
2023-09-21T13:06:58,507   adding 'parmed/amber/parameters.py'
2023-09-21T13:06:58,509   adding 'parmed/amber/readparm.py'
2023-09-21T13:06:58,514   adding 'parmed/amber/titratable_residues.py'
2023-09-21T13:06:58,517   adding 'parmed/amber/mdin/__init__.py'
2023-09-21T13:06:58,519   adding 'parmed/amber/mdin/cntrl.py'
2023-09-21T13:06:58,520   adding 'parmed/amber/mdin/ewald.py'
2023-09-21T13:06:58,522   adding 'parmed/amber/mdin/mdin.py'
2023-09-21T13:06:58,524   adding 'parmed/amber/mdin/pb.py'
2023-09-21T13:06:58,525   adding 'parmed/amber/mdin/qmmm.py'
2023-09-21T13:06:58,527   adding 'parmed/amber/mdin/rism.py'
2023-09-21T13:06:58,528   adding 'parmed/charmm/__init__.py'
2023-09-21T13:06:58,530   adding 'parmed/charmm/_charmmfile.py'
2023-09-21T13:06:58,532   adding 'parmed/charmm/charmmcrds.py'
2023-09-21T13:06:58,538   adding 'parmed/charmm/parameters.py'
2023-09-21T13:06:58,542   adding 'parmed/charmm/psf.py'
2023-09-21T13:06:58,544   adding 'parmed/formats/__init__.py'
2023-09-21T13:06:58,547   adding 'parmed/formats/mol2.py'
2023-09-21T13:06:58,556   adding 'parmed/formats/pdb.py'
2023-09-21T13:06:58,559   adding 'parmed/formats/pqr.py'
2023-09-21T13:06:58,561   adding 'parmed/formats/psf.py'
2023-09-21T13:06:58,563   adding 'parmed/formats/registry.py'
2023-09-21T13:06:58,564   adding 'parmed/formats/sdf.py'
2023-09-21T13:06:58,568   adding 'parmed/formats/pdbx/PdbxContainers.py'
2023-09-21T13:06:58,571   adding 'parmed/formats/pdbx/PdbxReader.py'
2023-09-21T13:06:58,572   adding 'parmed/formats/pdbx/PdbxWriter.py'
2023-09-21T13:06:58,574   adding 'parmed/formats/pdbx/__init__.py'
2023-09-21T13:06:58,575   adding 'parmed/gromacs/__init__.py'
2023-09-21T13:06:58,578   adding 'parmed/gromacs/_cpp.py'
2023-09-21T13:06:58,579   adding 'parmed/gromacs/_gromacsfile.py'
2023-09-21T13:06:58,581   adding 'parmed/gromacs/gromacsgro.py'
2023-09-21T13:06:58,592   adding 'parmed/gromacs/gromacstop.py'
2023-09-21T13:06:58,595   adding 'parmed/modeller/__init__.py'
2023-09-21T13:06:58,599   adding 'parmed/modeller/residue.py'
2023-09-21T13:06:58,600   adding 'parmed/modeller/standardtemplates.py'
2023-09-21T13:06:58,609   adding 'parmed/modeller/data/standard_residues.lib'
2023-09-21T13:06:58,612   adding 'parmed/namd/__init__.py'
2023-09-21T13:06:58,614   adding 'parmed/namd/namdbinfiles.py'
2023-09-21T13:06:58,616   adding 'parmed/openmm/__init__.py'
2023-09-21T13:06:58,622   adding 'parmed/openmm/parameters.py'
2023-09-21T13:06:58,627   adding 'parmed/openmm/reporters.py'
2023-09-21T13:06:58,630   adding 'parmed/openmm/topsystem.py'
2023-09-21T13:06:58,631   adding 'parmed/openmm/utils.py'
2023-09-21T13:06:58,633   adding 'parmed/openmm/xmlfile.py'
2023-09-21T13:06:58,634   adding 'parmed/rdkit/__init__.py'
2023-09-21T13:06:58,635   adding 'parmed/rdkit/rdkit.py'
2023-09-21T13:06:58,637   adding 'parmed/rosetta/__init__.py'
2023-09-21T13:06:58,638   adding 'parmed/rosetta/pose.py'
2023-09-21T13:06:58,640   adding 'parmed/tinker/__init__.py'
2023-09-21T13:06:58,643   adding 'parmed/tinker/parameterfile.py'
2023-09-21T13:06:58,645   adding 'parmed/tinker/system.py'
2023-09-21T13:06:58,647   adding 'parmed/tinker/tinkerfiles.py'
2023-09-21T13:06:58,649   adding 'parmed/tinker/topologyobjects.py'
2023-09-21T13:06:58,651   adding 'parmed/tools/__init__.py'
2023-09-21T13:06:58,673   adding 'parmed/tools/actions.py'
2023-09-21T13:06:58,677   adding 'parmed/tools/add1264.py'
2023-09-21T13:06:58,678   adding 'parmed/tools/addljtype.py'
2023-09-21T13:06:58,680   adding 'parmed/tools/argumentlist.py'
2023-09-21T13:06:58,684   adding 'parmed/tools/changeradii.py'
2023-09-21T13:06:58,686   adding 'parmed/tools/checkvalidity.py'
2023-09-21T13:06:58,688   adding 'parmed/tools/coarsegrain.py'
2023-09-21T13:06:58,690   adding 'parmed/tools/exceptions.py'
2023-09-21T13:06:58,692   adding 'parmed/tools/logos.py'
2023-09-21T13:06:58,695   adding 'parmed/tools/parmed_cmd.py'
2023-09-21T13:06:58,696   adding 'parmed/tools/parmlist.py'
2023-09-21T13:06:58,698   adding 'parmed/tools/gui/__init__.py'
2023-09-21T13:06:58,702   adding 'parmed/tools/gui/_guiactions.py'
2023-09-21T13:06:58,704   adding 'parmed/tools/gui/_guiwidgets.py'
2023-09-21T13:06:58,705   adding 'parmed/tools/gui/guiactions.py'
2023-09-21T13:06:58,707   adding 'parmed/tools/gui/guifiletools.py'
2023-09-21T13:06:58,708   adding 'parmed/tools/gui/guitools.py'
2023-09-21T13:06:58,710   adding 'parmed/tools/simulations/__init__.py'
2023-09-21T13:06:58,715   adding 'parmed/tools/simulations/openmm.py'
2023-09-21T13:06:58,717   adding 'parmed/tools/simulations/sanderapi.py'
2023-09-21T13:06:58,719   adding 'parmed/unit/__init__.py'
2023-09-21T13:06:58,720   adding 'parmed/unit/basedimension.py'
2023-09-21T13:06:58,722   adding 'parmed/unit/baseunit.py'
2023-09-21T13:06:58,723   adding 'parmed/unit/constants.py'
2023-09-21T13:06:58,725   adding 'parmed/unit/mymatrix.py'
2023-09-21T13:06:58,727   adding 'parmed/unit/prefix.py'
2023-09-21T13:06:58,731   adding 'parmed/unit/quantity.py'
2023-09-21T13:06:58,732   adding 'parmed/unit/standard_dimensions.py'
2023-09-21T13:06:58,735   adding 'parmed/unit/unit.py'
2023-09-21T13:06:58,738   adding 'parmed/unit/unit_definitions.py'
2023-09-21T13:06:58,739   adding 'parmed/unit/unit_math.py'
2023-09-21T13:06:58,741   adding 'parmed/unit/unit_operators.py'
2023-09-21T13:06:58,743   adding 'parmed/utils/__init__.py'
2023-09-21T13:06:58,744   adding 'parmed/utils/decorators.py'
2023-09-21T13:06:58,746   adding 'parmed/utils/io.py'
2023-09-21T13:06:58,751   adding 'parmed/utils/netcdf.py'
2023-09-21T13:06:58,752   adding 'parmed/utils/pairlist.py'
2023-09-21T13:06:58,754   adding 'parmed/utils/pandautils.py'
2023-09-21T13:06:58,758   adding 'parmed/utils/six.py'
2023-09-21T13:06:58,759   adding 'parmed/utils/timer.py'
2023-09-21T13:06:58,761   adding 'parmed/utils/fortranformat/FortranRecordReader.py'
2023-09-21T13:06:58,763   adding 'parmed/utils/fortranformat/FortranRecordWriter.py'
2023-09-21T13:06:58,764   adding 'parmed/utils/fortranformat/__init__.py'
2023-09-21T13:06:58,765   adding 'parmed/utils/fortranformat/_edit_descriptors.py'
2023-09-21T13:06:58,766   adding 'parmed/utils/fortranformat/_exceptions.py'
2023-09-21T13:06:58,769   adding 'parmed/utils/fortranformat/_input.py'
2023-09-21T13:06:58,770   adding 'parmed/utils/fortranformat/_lexer.py'
2023-09-21T13:06:58,772   adding 'parmed/utils/fortranformat/_misc.py'
2023-09-21T13:06:58,775   adding 'parmed/utils/fortranformat/_output.py'
2023-09-21T13:06:58,777   adding 'parmed/utils/fortranformat/_parser.py'
2023-09-21T13:06:58,778   adding 'parmed/utils/fortranformat/config.py'
2023-09-21T13:06:58,779   adding 'ParmEd-3.4.4.dist-info/METADATA'
2023-09-21T13:06:58,780   adding 'ParmEd-3.4.4.dist-info/WHEEL'
2023-09-21T13:06:58,781   adding 'ParmEd-3.4.4.dist-info/entry_points.txt'
2023-09-21T13:06:58,782   adding 'ParmEd-3.4.4.dist-info/top_level.txt'
2023-09-21T13:06:58,784   adding 'ParmEd-3.4.4.dist-info/RECORD'
2023-09-21T13:06:58,796   removing build/bdist.linux-armv7l/wheel
2023-09-21T13:06:58,979   Building wheel for parmed (setup.py): finished with status 'done'
2023-09-21T13:06:58,992   Created wheel for parmed: filename=ParmEd-3.4.4-cp311-cp311-linux_armv7l.whl size=882772 sha256=d06f1e10dedfc1f98e7c91cb21153dc5b871ff12b6267a7426acb47e7a96baed
2023-09-21T13:06:58,994   Stored in directory: /tmp/pip-ephem-wheel-cache-01tfumbr/wheels/ad/6f/d1/4664ebe17de70eedb0a14ae5c10668cadbc4eb60c471e3cbc9
2023-09-21T13:06:59,008 Successfully built parmed
2023-09-21T13:06:59,037 Removed build tracker: '/tmp/pip-build-tracker-k7pm8qdx'