2023-09-21T13:59:54,021 Created temporary directory: /tmp/pip-build-tracker-8jla3ojp 2023-09-21T13:59:54,023 Initialized build tracking at /tmp/pip-build-tracker-8jla3ojp 2023-09-21T13:59:54,023 Created build tracker: /tmp/pip-build-tracker-8jla3ojp 2023-09-21T13:59:54,023 Entered build tracker: /tmp/pip-build-tracker-8jla3ojp 2023-09-21T13:59:54,024 Created temporary directory: /tmp/pip-wheel-sfuut14s 2023-09-21T13:59:54,027 Created temporary directory: /tmp/pip-ephem-wheel-cache-mngaimb3 2023-09-21T13:59:54,051 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-21T13:59:54,055 2 location(s) to search for versions of gimmemotifs: 2023-09-21T13:59:54,055 * https://pypi.org/simple/gimmemotifs/ 2023-09-21T13:59:54,055 * https://www.piwheels.org/simple/gimmemotifs/ 2023-09-21T13:59:54,056 Fetching project page and analyzing links: https://pypi.org/simple/gimmemotifs/ 2023-09-21T13:59:54,056 Getting page https://pypi.org/simple/gimmemotifs/ 2023-09-21T13:59:54,058 Found index url https://pypi.org/simple/ 2023-09-21T13:59:54,280 Fetched page https://pypi.org/simple/gimmemotifs/ as application/vnd.pypi.simple.v1+json 2023-09-21T13:59:54,286 Found link https://files.pythonhosted.org/packages/3b/66/216440ec9d7e3c075bd26b6ab13132bcebb42fc2dd20a8886a6bec347976/gimmemotifs-0.8.9.1.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.8.9.1 2023-09-21T13:59:54,286 Found link https://files.pythonhosted.org/packages/9a/64/35a8f9fdbf3d212a5a4a797bf862df63a3b53e1858b1d18480a4f7cfe1e6/gimmemotifs-0.9.0.2.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.9.0.2 2023-09-21T13:59:54,287 Found link https://files.pythonhosted.org/packages/65/94/7402fe33e86c472e392ac203838c4e6d2c07a3dc421998d5e1c38dbcdcac/gimmemotifs-0.9.0.3.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.9.0.3 2023-09-21T13:59:54,288 Found link https://files.pythonhosted.org/packages/99/73/fc665e610b200b170a2701ecb2d298b8f51c9792e44e12b47a803ed1cf9e/gimmemotifs-0.10.0b1.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.10.0b1 2023-09-21T13:59:54,288 Found link https://files.pythonhosted.org/packages/e5/3a/cd3a48bbd49c2cdf325616da57ebe50b12135a4f60111cc4960573f29524/gimmemotifs-0.10.0b2.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.10.0b2 2023-09-21T13:59:54,289 Found link https://files.pythonhosted.org/packages/98/be/6fdb2557d262d2dfd365fa8502205c6a1f72cfa8029d0d9c3fdb9420f3ff/gimmemotifs-0.10.0b4.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.10.0b4 2023-09-21T13:59:54,289 Found link https://files.pythonhosted.org/packages/d3/83/2ffdbeb78227407f2ac3f4390f27257630709a3653a2c42926b181381f75/gimmemotifs-0.10.0b5.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.10.0b5 2023-09-21T13:59:54,290 Found link https://files.pythonhosted.org/packages/90/2c/f9493aeaaf1cf10742d7a7bf251dfbfe4a82d53f5222379b0466ac8cacfe/gimmemotifs-0.10.0b6.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.10.0b6 2023-09-21T13:59:54,291 Found link https://files.pythonhosted.org/packages/82/a3/34326512c0e9418729124bf9f5fd5da54a9792d5e99e84fe0653f3c38d2e/gimmemotifs-0.11.0b0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.11.0b0 2023-09-21T13:59:54,291 Found link https://files.pythonhosted.org/packages/6c/b7/f04441424da981f03b69c21f2aa534aa4c6cee7aaea4a5e6b1887116bb08/gimmemotifs-0.11.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.11.0 2023-09-21T13:59:54,292 Found link https://files.pythonhosted.org/packages/e9/c6/6b7e7069dbadc7d14ddab5483ef1c98e7532a3a92d66d89ef5cb59d0ac7a/gimmemotifs-0.11.1.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.11.1 2023-09-21T13:59:54,293 Found link https://files.pythonhosted.org/packages/53/5b/9251735efaf7a76ed7694c03a7a47cc21290f71d3958581a425da4682c47/gimmemotifs-0.12.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.12.0 2023-09-21T13:59:54,293 Found link https://files.pythonhosted.org/packages/66/76/ec3ff69655c4bbb8b606db6f45608125fe91e8568dd5858187f8b1b9379c/gimmemotifs-0.13.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.13.0 2023-09-21T13:59:54,294 Found link https://files.pythonhosted.org/packages/80/e9/84e4a077680c2c6e2baaca829ac660e910014c0aa57cd5dc915564a5a001/gimmemotifs-0.13.1.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.13.1 2023-09-21T13:59:54,295 Found link https://files.pythonhosted.org/packages/24/d1/8505a7798bf8e06f4a0b7a54b51bbcd9c9e5361d0dd1f3a89e78f2784c65/gimmemotifs-0.14.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.14.0 2023-09-21T13:59:54,295 Found link https://files.pythonhosted.org/packages/ef/4c/1a19f42d88f7fb47a1589a0c535a9dff9d75d1317a8a1a099ef0195348f9/gimmemotifs-0.14.2.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.14.2 2023-09-21T13:59:54,296 Found link https://files.pythonhosted.org/packages/1a/7d/113454d4ef0e960500067e0e4a0d0ed105318749c2e18f5be6542f22df48/gimmemotifs-0.14.3.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.14.3 2023-09-21T13:59:54,297 Found link https://files.pythonhosted.org/packages/f6/71/681a72802e005601ad8da3b695ada4eea8e56e8bd1f14d42d4d7248a24a4/gimmemotifs-0.14.4.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.14.4 2023-09-21T13:59:54,297 Found link https://files.pythonhosted.org/packages/5f/d9/43302fdb777ca8bad9739d81804644090b25011be4a0d2f99188a8849b40/gimmemotifs-0.15.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.15.0 2023-09-21T13:59:54,298 Found link https://files.pythonhosted.org/packages/de/a5/9a3804dda5730092769519f38a7bc736488cff60cf7c8f0f2f71eeeca3e4/gimmemotifs-0.15.2.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.15.2 2023-09-21T13:59:54,298 Found link https://files.pythonhosted.org/packages/0c/bd/11e957138342aef4b2539818d1c548fce634e7b323961cdd9beedba3879c/gimmemotifs-0.15.3.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.15.3 2023-09-21T13:59:54,299 Found link https://files.pythonhosted.org/packages/2b/71/faeeb7d734b4163500ad2e62fc131e66f912a722b7b9f6ad902f3ed62923/gimmemotifs-0.16.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.16.0 2023-09-21T13:59:54,299 Found link https://files.pythonhosted.org/packages/90/56/831b7548562dce57014d87dc9731c4b5ec0747c74ce2dd30966e2e812c5e/gimmemotifs-0.17.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.17.0 2023-09-21T13:59:54,300 Found link https://files.pythonhosted.org/packages/c5/c3/2dbd6363f025cf4b06d938479a9b35dab0ca91e59259b16e0bd6eef8bea0/gimmemotifs-0.17.2.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.17.2 2023-09-21T13:59:54,301 Found link https://files.pythonhosted.org/packages/23/b1/31f5061ff2749292af7c70ec4f1c81afd1991ea4a2cb62c4e5235d3f1f1c/gimmemotifs-0.18.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.18.0 2023-09-21T13:59:54,301 Fetching project page and analyzing links: https://www.piwheels.org/simple/gimmemotifs/ 2023-09-21T13:59:54,302 Getting page https://www.piwheels.org/simple/gimmemotifs/ 2023-09-21T13:59:54,303 Found index url https://www.piwheels.org/simple/ 2023-09-21T13:59:59,429 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLZeroReturnError(6, 'TLS/SSL connection has been closed (EOF) (_ssl.c:992)'))': /simple/gimmemotifs/ 2023-09-21T14:00:15,124 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='www.piwheels.org', port=443): Read timed out. (read timeout=15)")': /simple/gimmemotifs/ 2023-09-21T14:00:21,307 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLZeroReturnError(6, 'TLS/SSL connection has been closed (EOF) (_ssl.c:992)'))': /simple/gimmemotifs/ 2023-09-21T14:00:28,501 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLZeroReturnError(6, 'TLS/SSL connection has been closed (EOF) (_ssl.c:992)'))': /simple/gimmemotifs/ 2023-09-21T14:00:47,704 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='www.piwheels.org', port=443): Read timed out. (read timeout=15)")': /simple/gimmemotifs/ 2023-09-21T14:00:52,882 Could not fetch URL https://www.piwheels.org/simple/gimmemotifs/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/gimmemotifs/ (Caused by SSLError(SSLZeroReturnError(6, 'TLS/SSL connection has been closed (EOF) (_ssl.c:992)'))) - skipping 2023-09-21T14:00:52,890 Skipping link: not a file: https://www.piwheels.org/simple/gimmemotifs/ 2023-09-21T14:00:52,891 Skipping link: not a file: https://pypi.org/simple/gimmemotifs/ 2023-09-21T14:00:52,957 Given no hashes to check 1 links for project 'gimmemotifs': discarding no candidates 2023-09-21T14:00:52,974 Collecting gimmemotifs==0.17.2 2023-09-21T14:00:52,977 Created temporary directory: /tmp/pip-unpack-17ny4340 2023-09-21T14:00:53,750 Downloading gimmemotifs-0.17.2.tar.gz (12.2 MB) 2023-09-21T14:00:58,080 Added gimmemotifs==0.17.2 from https://files.pythonhosted.org/packages/c5/c3/2dbd6363f025cf4b06d938479a9b35dab0ca91e59259b16e0bd6eef8bea0/gimmemotifs-0.17.2.tar.gz to build tracker '/tmp/pip-build-tracker-8jla3ojp' 2023-09-21T14:00:58,083 Running setup.py (path:/tmp/pip-wheel-sfuut14s/gimmemotifs_85a4b73ce8fa4cc2bc93667a83cb8f45/setup.py) egg_info for package gimmemotifs 2023-09-21T14:00:58,084 Created temporary directory: /tmp/pip-pip-egg-info-ye1ju_x6 2023-09-21T14:00:58,084 Preparing metadata (setup.py): started 2023-09-21T14:00:58,086 Running command python setup.py egg_info 2023-09-21T14:00:59,271 running egg_info 2023-09-21T14:00:59,273 creating /tmp/pip-pip-egg-info-ye1ju_x6/gimmemotifs.egg-info 2023-09-21T14:00:59,297 writing /tmp/pip-pip-egg-info-ye1ju_x6/gimmemotifs.egg-info/PKG-INFO 2023-09-21T14:00:59,302 writing dependency_links to /tmp/pip-pip-egg-info-ye1ju_x6/gimmemotifs.egg-info/dependency_links.txt 2023-09-21T14:00:59,304 writing requirements to /tmp/pip-pip-egg-info-ye1ju_x6/gimmemotifs.egg-info/requires.txt 2023-09-21T14:00:59,306 writing top-level names to /tmp/pip-pip-egg-info-ye1ju_x6/gimmemotifs.egg-info/top_level.txt 2023-09-21T14:00:59,307 writing manifest file '/tmp/pip-pip-egg-info-ye1ju_x6/gimmemotifs.egg-info/SOURCES.txt' 2023-09-21T14:00:59,409 reading manifest file '/tmp/pip-pip-egg-info-ye1ju_x6/gimmemotifs.egg-info/SOURCES.txt' 2023-09-21T14:00:59,411 reading manifest template 'MANIFEST.in' 2023-09-21T14:00:59,413 no previously-included directories found matching 'test/' 2023-09-21T14:00:59,427 warning: no previously-included files found matching 'scripts/download_motif_databases.py' 2023-09-21T14:00:59,428 warning: no previously-included files found matching 'scripts/gimme_benchmark' 2023-09-21T14:00:59,428 adding license file 'COPYING' 2023-09-21T14:00:59,435 writing manifest file '/tmp/pip-pip-egg-info-ye1ju_x6/gimmemotifs.egg-info/SOURCES.txt' 2023-09-21T14:00:59,546 Preparing metadata (setup.py): finished with status 'done' 2023-09-21T14:00:59,550 Source in /tmp/pip-wheel-sfuut14s/gimmemotifs_85a4b73ce8fa4cc2bc93667a83cb8f45 has version 0.17.2, which satisfies requirement gimmemotifs==0.17.2 from https://files.pythonhosted.org/packages/c5/c3/2dbd6363f025cf4b06d938479a9b35dab0ca91e59259b16e0bd6eef8bea0/gimmemotifs-0.17.2.tar.gz 2023-09-21T14:00:59,551 Removed gimmemotifs==0.17.2 from https://files.pythonhosted.org/packages/c5/c3/2dbd6363f025cf4b06d938479a9b35dab0ca91e59259b16e0bd6eef8bea0/gimmemotifs-0.17.2.tar.gz from build tracker '/tmp/pip-build-tracker-8jla3ojp' 2023-09-21T14:00:59,556 Created temporary directory: /tmp/pip-unpack-audx61lq 2023-09-21T14:00:59,557 Created temporary directory: /tmp/pip-unpack-p2cvewio 2023-09-21T14:00:59,590 Building wheels for collected packages: gimmemotifs 2023-09-21T14:00:59,595 Created temporary directory: /tmp/pip-wheel-o_w9bzno 2023-09-21T14:00:59,595 Building wheel for gimmemotifs (setup.py): started 2023-09-21T14:00:59,597 Destination directory: /tmp/pip-wheel-o_w9bzno 2023-09-21T14:00:59,597 Running command python setup.py bdist_wheel 2023-09-21T14:01:00,662 running bdist_wheel 2023-09-21T14:01:00,754 running build 2023-09-21T14:01:00,754 running build_py 2023-09-21T14:01:00,755 creating build 2023-09-21T14:01:00,755 creating build/src 2023-09-21T14:01:00,757 creating build/src/HMS 2023-09-21T14:01:00,757 copying src/HMS/theta2.txt -> build/src/HMS 2023-09-21T14:01:00,759 copying src/HMS/theta0.txt -> build/src/HMS 2023-09-21T14:01:00,761 copying src/HMS/hms -> build/src/HMS 2023-09-21T14:01:00,764 copying src/HMS/theta1.txt -> build/src/HMS 2023-09-21T14:01:00,766 copying src/HMS/theta3.txt -> build/src/HMS 2023-09-21T14:01:00,768 creating build/src/BioProspector 2023-09-21T14:01:00,769 copying src/BioProspector/BioProspector.c -> build/src/BioProspector 2023-09-21T14:01:00,772 copying src/BioProspector/COPYING -> build/src/BioProspector 2023-09-21T14:01:00,774 creating build/src/ChIPMunk 2023-09-21T14:01:00,775 copying src/ChIPMunk/chipmunk.jar -> build/src/ChIPMunk 2023-09-21T14:01:00,843 copying src/ChIPMunk/ChIPMunk.sh -> build/src/ChIPMunk 2023-09-21T14:01:00,845 creating build/src/MotifSampler 2023-09-21T14:01:00,846 copying src/MotifSampler/CreateBackgroundModel_i386 -> build/src/MotifSampler 2023-09-21T14:01:00,865 copying src/MotifSampler/MotifSampler_x86_64 -> build/src/MotifSampler 2023-09-21T14:01:00,891 copying src/MotifSampler/MotifSampler_i386 -> build/src/MotifSampler 2023-09-21T14:01:00,913 copying src/MotifSampler/CreateBackgroundModel_x86_64 -> build/src/MotifSampler 2023-09-21T14:01:00,936 creating build/src/MDmodule 2023-09-21T14:01:00,937 copying src/MDmodule/MDmodule.c -> build/src/MDmodule 2023-09-21T14:01:00,940 copying src/MDmodule/COPYING -> build/src/MDmodule 2023-09-21T14:01:00,942 creating build/src/posmo 2023-09-21T14:01:00,943 copying src/posmo/posmo -> build/src/posmo 2023-09-21T14:01:00,946 copying src/posmo/clusterwd -> build/src/posmo 2023-09-21T14:01:00,949 copying src/README -> build/src 2023-09-21T14:01:00,951 creating build/src/AMD 2023-09-21T14:01:00,952 copying src/AMD/AMD.bin -> build/src/AMD 2023-09-21T14:01:00,957 creating build/src/Improbizer 2023-09-21T14:01:00,958 copying src/Improbizer/ameme_x86_64 -> build/src/Improbizer 2023-09-21T14:01:00,967 copying src/Improbizer/ameme_i386 -> build/src/Improbizer 2023-09-21T14:01:00,975 copying src/COPYING -> build/src 2023-09-21T14:01:00,977 creating build/lib.linux-armv7l-cpython-311 2023-09-21T14:01:00,978 creating build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:00,979 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-21T14:01:01,772 compiling BioProspector... ok 2023-09-21T14:01:02,557 compiling MDmodule... ok 2023-09-21T14:01:02,557 copying src/AMD/AMD.bin -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-21T14:01:02,562 copying build/src/BioProspector/BioProspector -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-21T14:01:02,566 copying build/src/MDmodule/MDmodule -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-21T14:01:02,569 copying src/posmo/posmo -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-21T14:01:02,573 copying src/posmo/clusterwd -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-21T14:01:02,577 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ChIPMunk 2023-09-21T14:01:02,578 copying build/src/ChIPMunk/chipmunk.jar -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ChIPMunk 2023-09-21T14:01:02,668 copying build/src/ChIPMunk/ChIPMunk.sh -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ChIPMunk 2023-09-21T14:01:02,670 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS 2023-09-21T14:01:02,671 copying build/src/HMS/theta2.txt -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS 2023-09-21T14:01:02,673 copying build/src/HMS/theta0.txt -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS 2023-09-21T14:01:02,675 copying build/src/HMS/hms -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS 2023-09-21T14:01:02,678 copying build/src/HMS/theta1.txt -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS 2023-09-21T14:01:02,680 copying build/src/HMS/theta3.txt -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS 2023-09-21T14:01:02,709 copying build/src/MotifSampler/MotifSampler_x86_64 -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/MotifSampler 2023-09-21T14:01:02,735 copying build/src/MotifSampler/CreateBackgroundModel_x86_64 -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/CreateBackgroundModel 2023-09-21T14:01:02,756 copying build/src/Improbizer/ameme_x86_64 -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ameme 2023-09-21T14:01:02,770 copying gimmemotifs/validation.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,772 copying gimmemotifs/preprocessing.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,774 copying gimmemotifs/scanner.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,777 copying gimmemotifs/rocmetrics.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,779 copying gimmemotifs/moap.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,782 copying gimmemotifs/orthologs.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,784 copying gimmemotifs/fasta.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,786 copying gimmemotifs/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,788 copying gimmemotifs/prediction.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,790 copying gimmemotifs/utils.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,793 copying gimmemotifs/comparison.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,796 copying gimmemotifs/maelstrom.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,799 copying gimmemotifs/cli.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,801 copying gimmemotifs/stats.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,804 copying gimmemotifs/denovo.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,806 copying gimmemotifs/_version.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,808 copying gimmemotifs/background.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,810 copying gimmemotifs/report.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,813 copying gimmemotifs/cluster.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,815 copying gimmemotifs/plot.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,818 copying gimmemotifs/rank.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,820 copying gimmemotifs/config.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:02,823 creating build/lib.linux-armv7l-cpython-311/data 2023-09-21T14:01:02,824 copying data/__init__.py -> build/lib.linux-armv7l-cpython-311/data 2023-09-21T14:01:02,827 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,827 copying gimmemotifs/tools/yamda.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,830 copying gimmemotifs/tools/posmo.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,832 copying gimmemotifs/tools/gadem.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,833 copying gimmemotifs/tools/trawler.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,835 copying gimmemotifs/tools/dinamo.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,837 copying gimmemotifs/tools/bioprospector.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,839 copying gimmemotifs/tools/prosampler.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,841 copying gimmemotifs/tools/memew.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,842 copying gimmemotifs/tools/rpmcmc.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,844 copying gimmemotifs/tools/dreme.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,846 copying gimmemotifs/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,848 copying gimmemotifs/tools/motifprogram.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,849 copying gimmemotifs/tools/meme.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,851 copying gimmemotifs/tools/motifsampler.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,853 copying gimmemotifs/tools/jaspar.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,855 copying gimmemotifs/tools/mdmodule.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,857 copying gimmemotifs/tools/improbizer.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,859 copying gimmemotifs/tools/weeder.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,860 copying gimmemotifs/tools/xxmotif.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,862 copying gimmemotifs/tools/chipmunk.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,864 copying gimmemotifs/tools/hms.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,866 copying gimmemotifs/tools/homer.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,868 copying gimmemotifs/tools/amd.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:01:02,870 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-21T14:01:02,871 copying gimmemotifs/motif/_plotting.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-21T14:01:02,873 copying gimmemotifs/motif/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-21T14:01:02,876 copying gimmemotifs/motif/_comparison.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-21T14:01:02,878 copying gimmemotifs/motif/_scanning.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-21T14:01:02,881 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/db 2023-09-21T14:01:02,883 copying gimmemotifs/db/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/db 2023-09-21T14:01:02,886 copying gimmemotifs/included_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-21T14:01:02,889 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:01:02,890 copying gimmemotifs/commands/motif2factors.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:01:02,893 copying gimmemotifs/commands/pfmscan.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:01:02,895 copying gimmemotifs/commands/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:01:02,897 copying gimmemotifs/commands/threshold.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:01:02,899 copying gimmemotifs/commands/prediction.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:01:02,902 copying gimmemotifs/commands/match.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:01:02,904 copying gimmemotifs/commands/maelstrom.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:01:02,906 copying gimmemotifs/commands/logo.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:01:02,908 copying gimmemotifs/commands/background.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:01:02,910 copying gimmemotifs/commands/diff.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:01:02,913 copying gimmemotifs/commands/location.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:01:02,915 copying gimmemotifs/commands/cluster.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:01:02,917 copying gimmemotifs/commands/motifs.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:01:02,920 running egg_info 2023-09-21T14:01:02,993 writing gimmemotifs.egg-info/PKG-INFO 2023-09-21T14:01:02,997 writing dependency_links to gimmemotifs.egg-info/dependency_links.txt 2023-09-21T14:01:03,000 writing requirements to gimmemotifs.egg-info/requires.txt 2023-09-21T14:01:03,001 writing top-level names to gimmemotifs.egg-info/top_level.txt 2023-09-21T14:01:03,032 reading manifest file 'gimmemotifs.egg-info/SOURCES.txt' 2023-09-21T14:01:03,051 reading manifest template 'MANIFEST.in' 2023-09-21T14:01:03,053 no previously-included directories found matching 'test/' 2023-09-21T14:01:03,063 warning: no previously-included files found matching 'scripts/download_motif_databases.py' 2023-09-21T14:01:03,063 warning: no previously-included files found matching 'scripts/gimme_benchmark' 2023-09-21T14:01:03,064 adding license file 'COPYING' 2023-09-21T14:01:03,073 writing manifest file 'gimmemotifs.egg-info/SOURCES.txt' 2023-09-21T14:01:03,076 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.__pycache__' is absent from the `packages` configuration. 2023-09-21T14:01:03,077 !! 2023-09-21T14:01:03,078 ******************************************************************************** 2023-09-21T14:01:03,078 ############################ 2023-09-21T14:01:03,079 # Package would be ignored # 2023-09-21T14:01:03,079 ############################ 2023-09-21T14:01:03,080 Python recognizes 'data.__pycache__' as an importable package[^1], 2023-09-21T14:01:03,080 but it is absent from setuptools' `packages` configuration. 2023-09-21T14:01:03,081 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-21T14:01:03,081 package, please make sure that 'data.__pycache__' is explicitly added 2023-09-21T14:01:03,082 to the `packages` configuration field. 2023-09-21T14:01:03,083 Alternatively, you can also rely on setuptools' discovery methods 2023-09-21T14:01:03,083 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-21T14:01:03,084 instead of `find_packages(...)`/`find:`). 2023-09-21T14:01:03,085 You can read more about "package discovery" on setuptools documentation page: 2023-09-21T14:01:03,086 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-21T14:01:03,087 If you don't want 'data.__pycache__' to be distributed and are 2023-09-21T14:01:03,087 already explicitly excluding 'data.__pycache__' via 2023-09-21T14:01:03,088 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-21T14:01:03,088 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-21T14:01:03,089 combination with a more fine grained `package-data` configuration. 2023-09-21T14:01:03,089 You can read more about "package data files" on setuptools documentation page: 2023-09-21T14:01:03,090 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-21T14:01:03,092 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-21T14:01:03,093 even if it does not contain any `.py` files. 2023-09-21T14:01:03,093 On the other hand, currently there is no concept of package data 2023-09-21T14:01:03,093 directory, all directories are treated like packages. 2023-09-21T14:01:03,094 ******************************************************************************** 2023-09-21T14:01:03,094 !! 2023-09-21T14:01:03,095 check.warn(importable) 2023-09-21T14:01:03,095 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.bg' is absent from the `packages` configuration. 2023-09-21T14:01:03,096 !! 2023-09-21T14:01:03,096 ******************************************************************************** 2023-09-21T14:01:03,097 ############################ 2023-09-21T14:01:03,097 # Package would be ignored # 2023-09-21T14:01:03,098 ############################ 2023-09-21T14:01:03,098 Python recognizes 'data.bg' as an importable package[^1], 2023-09-21T14:01:03,099 but it is absent from setuptools' `packages` configuration. 2023-09-21T14:01:03,100 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-21T14:01:03,100 package, please make sure that 'data.bg' is explicitly added 2023-09-21T14:01:03,101 to the `packages` configuration field. 2023-09-21T14:01:03,101 Alternatively, you can also rely on setuptools' discovery methods 2023-09-21T14:01:03,102 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-21T14:01:03,102 instead of `find_packages(...)`/`find:`). 2023-09-21T14:01:03,103 You can read more about "package discovery" on setuptools documentation page: 2023-09-21T14:01:03,104 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-21T14:01:03,105 If you don't want 'data.bg' to be distributed and are 2023-09-21T14:01:03,106 already explicitly excluding 'data.bg' via 2023-09-21T14:01:03,106 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-21T14:01:03,106 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-21T14:01:03,107 combination with a more fine grained `package-data` configuration. 2023-09-21T14:01:03,108 You can read more about "package data files" on setuptools documentation page: 2023-09-21T14:01:03,109 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-21T14:01:03,110 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-21T14:01:03,111 even if it does not contain any `.py` files. 2023-09-21T14:01:03,111 On the other hand, currently there is no concept of package data 2023-09-21T14:01:03,112 directory, all directories are treated like packages. 2023-09-21T14:01:03,112 ******************************************************************************** 2023-09-21T14:01:03,113 !! 2023-09-21T14:01:03,114 check.warn(importable) 2023-09-21T14:01:03,114 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.cfg' is absent from the `packages` configuration. 2023-09-21T14:01:03,115 !! 2023-09-21T14:01:03,116 ******************************************************************************** 2023-09-21T14:01:03,116 ############################ 2023-09-21T14:01:03,116 # Package would be ignored # 2023-09-21T14:01:03,117 ############################ 2023-09-21T14:01:03,117 Python recognizes 'data.cfg' as an importable package[^1], 2023-09-21T14:01:03,118 but it is absent from setuptools' `packages` configuration. 2023-09-21T14:01:03,119 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-21T14:01:03,119 package, please make sure that 'data.cfg' is explicitly added 2023-09-21T14:01:03,120 to the `packages` configuration field. 2023-09-21T14:01:03,121 Alternatively, you can also rely on setuptools' discovery methods 2023-09-21T14:01:03,122 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-21T14:01:03,122 instead of `find_packages(...)`/`find:`). 2023-09-21T14:01:03,123 You can read more about "package discovery" on setuptools documentation page: 2023-09-21T14:01:03,124 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-21T14:01:03,124 If you don't want 'data.cfg' to be distributed and are 2023-09-21T14:01:03,125 already explicitly excluding 'data.cfg' via 2023-09-21T14:01:03,125 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-21T14:01:03,126 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-21T14:01:03,126 combination with a more fine grained `package-data` configuration. 2023-09-21T14:01:03,127 You can read more about "package data files" on setuptools documentation page: 2023-09-21T14:01:03,128 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-21T14:01:03,130 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-21T14:01:03,130 even if it does not contain any `.py` files. 2023-09-21T14:01:03,131 On the other hand, currently there is no concept of package data 2023-09-21T14:01:03,131 directory, all directories are treated like packages. 2023-09-21T14:01:03,132 ******************************************************************************** 2023-09-21T14:01:03,132 !! 2023-09-21T14:01:03,133 check.warn(importable) 2023-09-21T14:01:03,133 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.examples' is absent from the `packages` configuration. 2023-09-21T14:01:03,134 !! 2023-09-21T14:01:03,135 ******************************************************************************** 2023-09-21T14:01:03,135 ############################ 2023-09-21T14:01:03,136 # Package would be ignored # 2023-09-21T14:01:03,136 ############################ 2023-09-21T14:01:03,137 Python recognizes 'data.examples' as an importable package[^1], 2023-09-21T14:01:03,137 but it is absent from setuptools' `packages` configuration. 2023-09-21T14:01:03,138 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-21T14:01:03,138 package, please make sure that 'data.examples' is explicitly added 2023-09-21T14:01:03,139 to the `packages` configuration field. 2023-09-21T14:01:03,140 Alternatively, you can also rely on setuptools' discovery methods 2023-09-21T14:01:03,140 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-21T14:01:03,141 instead of `find_packages(...)`/`find:`). 2023-09-21T14:01:03,142 You can read more about "package discovery" on setuptools documentation page: 2023-09-21T14:01:03,143 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-21T14:01:03,144 If you don't want 'data.examples' to be distributed and are 2023-09-21T14:01:03,144 already explicitly excluding 'data.examples' via 2023-09-21T14:01:03,145 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-21T14:01:03,146 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-21T14:01:03,147 combination with a more fine grained `package-data` configuration. 2023-09-21T14:01:03,148 You can read more about "package data files" on setuptools documentation page: 2023-09-21T14:01:03,149 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-21T14:01:03,150 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-21T14:01:03,151 even if it does not contain any `.py` files. 2023-09-21T14:01:03,151 On the other hand, currently there is no concept of package data 2023-09-21T14:01:03,151 directory, all directories are treated like packages. 2023-09-21T14:01:03,152 ******************************************************************************** 2023-09-21T14:01:03,153 !! 2023-09-21T14:01:03,153 check.warn(importable) 2023-09-21T14:01:03,153 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.motif_databases' is absent from the `packages` configuration. 2023-09-21T14:01:03,154 !! 2023-09-21T14:01:03,155 ******************************************************************************** 2023-09-21T14:01:03,155 ############################ 2023-09-21T14:01:03,156 # Package would be ignored # 2023-09-21T14:01:03,156 ############################ 2023-09-21T14:01:03,156 Python recognizes 'data.motif_databases' as an importable package[^1], 2023-09-21T14:01:03,157 but it is absent from setuptools' `packages` configuration. 2023-09-21T14:01:03,158 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-21T14:01:03,158 package, please make sure that 'data.motif_databases' is explicitly added 2023-09-21T14:01:03,159 to the `packages` configuration field. 2023-09-21T14:01:03,159 Alternatively, you can also rely on setuptools' discovery methods 2023-09-21T14:01:03,160 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-21T14:01:03,160 instead of `find_packages(...)`/`find:`). 2023-09-21T14:01:03,161 You can read more about "package discovery" on setuptools documentation page: 2023-09-21T14:01:03,162 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-21T14:01:03,169 If you don't want 'data.motif_databases' to be distributed and are 2023-09-21T14:01:03,170 already explicitly excluding 'data.motif_databases' via 2023-09-21T14:01:03,171 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-21T14:01:03,173 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-21T14:01:03,176 combination with a more fine grained `package-data` configuration. 2023-09-21T14:01:03,179 You can read more about "package data files" on setuptools documentation page: 2023-09-21T14:01:03,180 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-21T14:01:03,181 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-21T14:01:03,182 even if it does not contain any `.py` files. 2023-09-21T14:01:03,184 On the other hand, currently there is no concept of package data 2023-09-21T14:01:03,184 directory, all directories are treated like packages. 2023-09-21T14:01:03,185 ******************************************************************************** 2023-09-21T14:01:03,186 !! 2023-09-21T14:01:03,186 check.warn(importable) 2023-09-21T14:01:03,187 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.score_dists' is absent from the `packages` configuration. 2023-09-21T14:01:03,187 !! 2023-09-21T14:01:03,188 ******************************************************************************** 2023-09-21T14:01:03,189 ############################ 2023-09-21T14:01:03,189 # Package would be ignored # 2023-09-21T14:01:03,190 ############################ 2023-09-21T14:01:03,190 Python recognizes 'data.score_dists' as an importable package[^1], 2023-09-21T14:01:03,191 but it is absent from setuptools' `packages` configuration. 2023-09-21T14:01:03,192 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-21T14:01:03,192 package, please make sure that 'data.score_dists' is explicitly added 2023-09-21T14:01:03,193 to the `packages` configuration field. 2023-09-21T14:01:03,193 Alternatively, you can also rely on setuptools' discovery methods 2023-09-21T14:01:03,196 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-21T14:01:03,199 instead of `find_packages(...)`/`find:`). 2023-09-21T14:01:03,204 You can read more about "package discovery" on setuptools documentation page: 2023-09-21T14:01:03,205 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-21T14:01:03,214 If you don't want 'data.score_dists' to be distributed and are 2023-09-21T14:01:03,214 already explicitly excluding 'data.score_dists' via 2023-09-21T14:01:03,215 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-21T14:01:03,219 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-21T14:01:03,220 combination with a more fine grained `package-data` configuration. 2023-09-21T14:01:03,222 You can read more about "package data files" on setuptools documentation page: 2023-09-21T14:01:03,223 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-21T14:01:03,249 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-21T14:01:03,255 even if it does not contain any `.py` files. 2023-09-21T14:01:03,257 On the other hand, currently there is no concept of package data 2023-09-21T14:01:03,258 directory, all directories are treated like packages. 2023-09-21T14:01:03,258 ******************************************************************************** 2023-09-21T14:01:03,259 !! 2023-09-21T14:01:03,259 check.warn(importable) 2023-09-21T14:01:03,260 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.templates' is absent from the `packages` configuration. 2023-09-21T14:01:03,262 !! 2023-09-21T14:01:03,262 ******************************************************************************** 2023-09-21T14:01:03,263 ############################ 2023-09-21T14:01:03,264 # Package would be ignored # 2023-09-21T14:01:03,264 ############################ 2023-09-21T14:01:03,265 Python recognizes 'data.templates' as an importable package[^1], 2023-09-21T14:01:03,265 but it is absent from setuptools' `packages` configuration. 2023-09-21T14:01:03,266 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-21T14:01:03,267 package, please make sure that 'data.templates' is explicitly added 2023-09-21T14:01:03,267 to the `packages` configuration field. 2023-09-21T14:01:03,268 Alternatively, you can also rely on setuptools' discovery methods 2023-09-21T14:01:03,269 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-21T14:01:03,269 instead of `find_packages(...)`/`find:`). 2023-09-21T14:01:03,276 You can read more about "package discovery" on setuptools documentation page: 2023-09-21T14:01:03,279 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-21T14:01:03,281 If you don't want 'data.templates' to be distributed and are 2023-09-21T14:01:03,282 already explicitly excluding 'data.templates' via 2023-09-21T14:01:03,283 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-21T14:01:03,283 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-21T14:01:03,284 combination with a more fine grained `package-data` configuration. 2023-09-21T14:01:03,285 You can read more about "package data files" on setuptools documentation page: 2023-09-21T14:01:03,286 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-21T14:01:03,287 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-21T14:01:03,288 even if it does not contain any `.py` files. 2023-09-21T14:01:03,288 On the other hand, currently there is no concept of package data 2023-09-21T14:01:03,289 directory, all directories are treated like packages. 2023-09-21T14:01:03,289 ******************************************************************************** 2023-09-21T14:01:03,290 !! 2023-09-21T14:01:03,292 check.warn(importable) 2023-09-21T14:01:03,293 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.templates.sortable' is absent from the `packages` configuration. 2023-09-21T14:01:03,296 !! 2023-09-21T14:01:03,297 ******************************************************************************** 2023-09-21T14:01:03,297 ############################ 2023-09-21T14:01:03,298 # Package would be ignored # 2023-09-21T14:01:03,299 ############################ 2023-09-21T14:01:03,299 Python recognizes 'data.templates.sortable' as an importable package[^1], 2023-09-21T14:01:03,300 but it is absent from setuptools' `packages` configuration. 2023-09-21T14:01:03,301 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-21T14:01:03,302 package, please make sure that 'data.templates.sortable' is explicitly added 2023-09-21T14:01:03,303 to the `packages` configuration field. 2023-09-21T14:01:03,304 Alternatively, you can also rely on setuptools' discovery methods 2023-09-21T14:01:03,305 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-21T14:01:03,307 instead of `find_packages(...)`/`find:`). 2023-09-21T14:01:03,309 You can read more about "package discovery" on setuptools documentation page: 2023-09-21T14:01:03,310 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-21T14:01:03,311 If you don't want 'data.templates.sortable' to be distributed and are 2023-09-21T14:01:03,312 already explicitly excluding 'data.templates.sortable' via 2023-09-21T14:01:03,312 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-21T14:01:03,313 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-21T14:01:03,317 combination with a more fine grained `package-data` configuration. 2023-09-21T14:01:03,321 You can read more about "package data files" on setuptools documentation page: 2023-09-21T14:01:03,322 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-21T14:01:03,324 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-21T14:01:03,325 even if it does not contain any `.py` files. 2023-09-21T14:01:03,325 On the other hand, currently there is no concept of package data 2023-09-21T14:01:03,326 directory, all directories are treated like packages. 2023-09-21T14:01:03,327 ******************************************************************************** 2023-09-21T14:01:03,328 !! 2023-09-21T14:01:03,329 check.warn(importable) 2023-09-21T14:01:03,331 copying gimmemotifs/c_metrics.c -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:03,332 creating build/lib.linux-armv7l-cpython-311/data/__pycache__ 2023-09-21T14:01:03,333 copying data/__pycache__/__init__.cpython-310.pyc -> build/lib.linux-armv7l-cpython-311/data/__pycache__ 2023-09-21T14:01:03,333 creating build/lib.linux-armv7l-cpython-311/data/bg 2023-09-21T14:01:03,335 copying data/bg/hg18.MotifSampler.bg -> build/lib.linux-armv7l-cpython-311/data/bg 2023-09-21T14:01:03,336 copying data/bg/hg19.MotifSampler.bg -> build/lib.linux-armv7l-cpython-311/data/bg 2023-09-21T14:01:03,337 copying data/bg/hg38.MotifSampler.bg -> build/lib.linux-armv7l-cpython-311/data/bg 2023-09-21T14:01:03,337 copying data/bg/mm10.MotifSampler.bg -> build/lib.linux-armv7l-cpython-311/data/bg 2023-09-21T14:01:03,338 copying data/bg/mm9.MotifSampler.bg -> build/lib.linux-armv7l-cpython-311/data/bg 2023-09-21T14:01:03,341 copying data/bg/xenTro2.MotifSampler.bg -> build/lib.linux-armv7l-cpython-311/data/bg 2023-09-21T14:01:03,343 creating build/lib.linux-armv7l-cpython-311/data/cfg 2023-09-21T14:01:03,343 copying data/cfg/gimmemotifs.default.cfg -> build/lib.linux-armv7l-cpython-311/data/cfg 2023-09-21T14:01:03,344 creating build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:01:03,345 copying data/examples/Gm12878.CTCF.top500.w200.bed -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:01:03,345 copying data/examples/Gm12878.CTCF.top500.w200.fa -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:01:03,346 copying data/examples/MA0099.3.jaspar -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:01:03,346 copying data/examples/NRF1.bed -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:01:03,346 copying data/examples/TAp73alpha.bed -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:01:03,347 copying data/examples/TAp73alpha.fa -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:01:03,348 copying data/examples/example.pfm -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:01:03,349 copying data/examples/hg19.blood.most_variable.10k.txt -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:01:03,350 copying data/examples/hg19.blood.most_variable.1k.txt -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:01:03,350 copying data/examples/test.small.fa -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:01:03,352 creating build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,352 copying data/motif_databases/CIS-BP.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,353 copying data/motif_databases/CIS-BP.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,354 copying data/motif_databases/ENCODE.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,354 copying data/motif_databases/ENCODE.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,356 copying data/motif_databases/HOCOMOCOv10_HUMAN.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,360 copying data/motif_databases/HOCOMOCOv10_HUMAN.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,364 copying data/motif_databases/HOCOMOCOv10_MOUSE.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,364 copying data/motif_databases/HOCOMOCOv10_MOUSE.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,365 copying data/motif_databases/HOCOMOCOv11_HUMAN.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,365 copying data/motif_databases/HOCOMOCOv11_HUMAN.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,366 copying data/motif_databases/HOCOMOCOv11_MOUSE.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,366 copying data/motif_databases/HOCOMOCOv11_MOUSE.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,367 copying data/motif_databases/HOMER.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,367 copying data/motif_databases/HOMER.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,368 copying data/motif_databases/IMAGE.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,368 copying data/motif_databases/IMAGE.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,369 copying data/motif_databases/JASPAR2018.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,371 copying data/motif_databases/JASPAR2018.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,380 copying data/motif_databases/JASPAR2018_fungi.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,383 copying data/motif_databases/JASPAR2018_fungi.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,386 copying data/motif_databases/JASPAR2018_insects.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,389 copying data/motif_databases/JASPAR2018_insects.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,392 copying data/motif_databases/JASPAR2018_nematodes.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,394 copying data/motif_databases/JASPAR2018_nematodes.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,397 copying data/motif_databases/JASPAR2018_plants.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,399 copying data/motif_databases/JASPAR2018_plants.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,404 copying data/motif_databases/JASPAR2018_urochordates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,407 copying data/motif_databases/JASPAR2018_urochordates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,409 copying data/motif_databases/JASPAR2018_vertebrates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,412 copying data/motif_databases/JASPAR2018_vertebrates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,418 copying data/motif_databases/JASPAR2020.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,422 copying data/motif_databases/JASPAR2020.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,438 copying data/motif_databases/JASPAR2020_fungi.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,441 copying data/motif_databases/JASPAR2020_fungi.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,445 copying data/motif_databases/JASPAR2020_insects.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,447 copying data/motif_databases/JASPAR2020_insects.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,450 copying data/motif_databases/JASPAR2020_nematodes.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,453 copying data/motif_databases/JASPAR2020_nematodes.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,455 copying data/motif_databases/JASPAR2020_plants.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,458 copying data/motif_databases/JASPAR2020_plants.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,466 copying data/motif_databases/JASPAR2020_urochordates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,468 copying data/motif_databases/JASPAR2020_urochordates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,470 copying data/motif_databases/JASPAR2020_vertebrates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,473 copying data/motif_databases/JASPAR2020_vertebrates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,480 copying data/motif_databases/JASPAR2022.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,484 copying data/motif_databases/JASPAR2022.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,496 copying data/motif_databases/JASPAR2022_fungi.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,499 copying data/motif_databases/JASPAR2022_fungi.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,502 copying data/motif_databases/JASPAR2022_insects.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,505 copying data/motif_databases/JASPAR2022_insects.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,508 copying data/motif_databases/JASPAR2022_nematodes.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,509 copying data/motif_databases/JASPAR2022_nematodes.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,512 copying data/motif_databases/JASPAR2022_plants.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,515 copying data/motif_databases/JASPAR2022_plants.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,520 copying data/motif_databases/JASPAR2022_urochordates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,523 copying data/motif_databases/JASPAR2022_urochordates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,526 copying data/motif_databases/JASPAR2022_vertebrates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,530 copying data/motif_databases/JASPAR2022_vertebrates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,537 copying data/motif_databases/RSAT_insects.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,539 copying data/motif_databases/RSAT_insects.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,548 copying data/motif_databases/RSAT_plants.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,550 copying data/motif_databases/RSAT_plants.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,557 copying data/motif_databases/RSAT_vertebrates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,559 copying data/motif_databases/RSAT_vertebrates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,574 copying data/motif_databases/SwissRegulon.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,577 copying data/motif_databases/SwissRegulon.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,582 copying data/motif_databases/factorbook.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,585 copying data/motif_databases/factorbook.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,592 copying data/motif_databases/gimme.invertebrate.v1.0.pwm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,599 copying data/motif_databases/gimme.plant.v1.0.pwm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,603 copying data/motif_databases/gimme.vertebrate.v3.1.factor2motifs.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,607 copying data/motif_databases/gimme.vertebrate.v3.1.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,610 copying data/motif_databases/gimme.vertebrate.v3.1.pwm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,623 copying data/motif_databases/gimme.vertebrate.v5.0.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,631 copying data/motif_databases/gimme.vertebrate.v5.0.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:01:03,651 creating build/lib.linux-armv7l-cpython-311/data/score_dists 2023-09-21T14:01:03,652 copying data/score_dists/dic2_bg_mean_sd.txt -> build/lib.linux-armv7l-cpython-311/data/score_dists 2023-09-21T14:01:03,654 copying data/score_dists/dic2_mean_sd.txt -> build/lib.linux-armv7l-cpython-311/data/score_dists 2023-09-21T14:01:03,657 copying data/score_dists/total_wic_mean_score_dist.txt -> build/lib.linux-armv7l-cpython-311/data/score_dists 2023-09-21T14:01:03,659 creating build/lib.linux-armv7l-cpython-311/data/templates 2023-09-21T14:01:03,660 copying data/templates/cluster_template.jinja.html -> build/lib.linux-armv7l-cpython-311/data/templates 2023-09-21T14:01:03,662 copying data/templates/report_template.jinja.html -> build/lib.linux-armv7l-cpython-311/data/templates 2023-09-21T14:01:03,665 copying data/templates/star.png -> build/lib.linux-armv7l-cpython-311/data/templates 2023-09-21T14:01:03,667 copying data/templates/star_silver.png -> build/lib.linux-armv7l-cpython-311/data/templates 2023-09-21T14:01:03,670 copying data/templates/table.tpl -> build/lib.linux-armv7l-cpython-311/data/templates 2023-09-21T14:01:03,672 creating build/lib.linux-armv7l-cpython-311/data/templates/sortable 2023-09-21T14:01:03,673 copying data/templates/sortable/sortable-theme-slick.css -> build/lib.linux-armv7l-cpython-311/data/templates/sortable 2023-09-21T14:01:03,675 copying data/templates/sortable/sortable.min.js -> build/lib.linux-armv7l-cpython-311/data/templates/sortable 2023-09-21T14:01:03,681 UPDATING build/lib.linux-armv7l-cpython-311/gimmemotifs/_version.py 2023-09-21T14:01:03,682 set build/lib.linux-armv7l-cpython-311/gimmemotifs/_version.py to '0.17.2' 2023-09-21T14:01:03,683 running build_ext 2023-09-21T14:01:04,196 building 'gimmemotifs.c_metrics' extension 2023-09-21T14:01:04,197 creating build/temp.linux-armv7l-cpython-311 2023-09-21T14:01:04,197 creating build/temp.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:01:04,198 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c gimmemotifs/c_metrics.c -o build/temp.linux-armv7l-cpython-311/gimmemotifs/c_metrics.o 2023-09-21T14:01:04,565 gimmemotifs/c_metrics.c: In function ‘get_truncate_len’: 2023-09-21T14:01:04,566 gimmemotifs/c_metrics.c:315:5: warning: type of ‘len1’ defaults to ‘int’ [-Wimplicit-int] 2023-09-21T14:01:04,566 315 | int get_truncate_len(len1, len2, pos) { 2023-09-21T14:01:04,567 | ^~~~~~~~~~~~~~~~ 2023-09-21T14:01:04,568 gimmemotifs/c_metrics.c:315:5: warning: type of ‘len2’ defaults to ‘int’ [-Wimplicit-int] 2023-09-21T14:01:04,568 gimmemotifs/c_metrics.c:315:5: warning: type of ‘pos’ defaults to ‘int’ [-Wimplicit-int] 2023-09-21T14:01:04,574 gimmemotifs/c_metrics.c: In function ‘c_metrics_pwmscan’: 2023-09-21T14:01:04,574 gimmemotifs/c_metrics.c:564:16: warning: unused variable ‘pwm_min’ [-Wunused-variable] 2023-09-21T14:01:04,575 564 | double pwm_min = -50; 2023-09-21T14:01:04,576 | ^~~~~~~ 2023-09-21T14:01:04,576 gimmemotifs/c_metrics.c:563:13: warning: unused variable ‘c’ [-Wunused-variable] 2023-09-21T14:01:04,577 563 | int c; 2023-09-21T14:01:04,578 | ^ 2023-09-21T14:01:04,582 gimmemotifs/c_metrics.c: At top level: 2023-09-21T14:01:04,583 gimmemotifs/c_metrics.c:901:22: warning: initialization of ‘int’ from ‘void *’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-21T14:01:04,583 901 | {NULL, NULL, NULL, 0, NULL} 2023-09-21T14:01:04,583 | ^~~~ 2023-09-21T14:01:04,584 gimmemotifs/c_metrics.c:901:22: note: (near initialization for ‘CoreMethods[4].ml_flags’) 2023-09-21T14:01:04,585 gimmemotifs/c_metrics.c:901:31: warning: excess elements in struct initializer 2023-09-21T14:01:04,585 901 | {NULL, NULL, NULL, 0, NULL} 2023-09-21T14:01:04,586 | ^~~~ 2023-09-21T14:01:04,587 gimmemotifs/c_metrics.c:901:31: note: (near initialization for ‘CoreMethods[4]’) 2023-09-21T14:01:05,932 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/gimmemotifs/c_metrics.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/gimmemotifs/c_metrics.cpython-311-arm-linux-gnueabihf.so 2023-09-21T14:01:06,026 running build_scripts 2023-09-21T14:01:06,027 creating build/scripts-3.11 2023-09-21T14:01:06,028 copying and adjusting scripts/gimme -> build/scripts-3.11 2023-09-21T14:01:06,030 copying and adjusting scripts/combine_peaks -> build/scripts-3.11 2023-09-21T14:01:06,031 copying and adjusting scripts/coverage_table -> build/scripts-3.11 2023-09-21T14:01:06,032 changing mode of build/scripts-3.11/gimme from 644 to 755 2023-09-21T14:01:06,033 changing mode of build/scripts-3.11/combine_peaks from 644 to 755 2023-09-21T14:01:06,033 changing mode of build/scripts-3.11/coverage_table from 644 to 755 2023-09-21T14:01:06,057 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-21T14:01:06,058 !! 2023-09-21T14:01:06,059 ******************************************************************************** 2023-09-21T14:01:06,060 Please avoid running ``setup.py`` directly. 2023-09-21T14:01:06,060 Instead, use pypa/build, pypa/installer or other 2023-09-21T14:01:06,060 standards-based tools. 2023-09-21T14:01:06,061 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-21T14:01:06,062 ******************************************************************************** 2023-09-21T14:01:06,063 !! 2023-09-21T14:01:06,063 self.initialize_options() 2023-09-21T14:01:06,083 installing to build/bdist.linux-armv7l/wheel 2023-09-21T14:01:06,084 running install 2023-09-21T14:01:06,107 running install_lib 2023-09-21T14:01:06,131 creating build/bdist.linux-armv7l 2023-09-21T14:01:06,132 creating build/bdist.linux-armv7l/wheel 2023-09-21T14:01:06,133 creating build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,134 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/validation.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,137 creating build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,138 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/yamda.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,140 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/posmo.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,142 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/gadem.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,144 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/trawler.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,145 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/dinamo.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,147 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/bioprospector.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,149 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/prosampler.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,151 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/memew.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,153 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/rpmcmc.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,154 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/dreme.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,156 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,158 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/motifprogram.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,159 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/meme.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,161 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/motifsampler.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,163 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/jaspar.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,165 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/mdmodule.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,167 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/improbizer.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,168 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/weeder.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,170 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/xxmotif.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,172 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/chipmunk.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,174 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/hms.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,176 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/homer.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,177 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/amd.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:01:06,179 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/preprocessing.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,182 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/scanner.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,184 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/rocmetrics.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,187 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/moap.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,189 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/orthologs.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,192 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/fasta.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,194 creating build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-21T14:01:06,195 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/motif/_plotting.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-21T14:01:06,198 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/motif/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-21T14:01:06,200 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/motif/_comparison.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-21T14:01:06,203 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/motif/_scanning.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-21T14:01:06,205 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/c_metrics.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,208 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,210 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/prediction.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,212 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/utils.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,214 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/comparison.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,217 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/maelstrom.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,220 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/c_metrics.c -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,222 creating build/bdist.linux-armv7l/wheel/gimmemotifs/db 2023-09-21T14:01:06,223 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/db/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/db 2023-09-21T14:01:06,226 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/cli.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,228 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/stats.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,231 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/denovo.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,233 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/_version.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,235 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/background.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,237 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/report.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,241 creating build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:01:06,242 creating build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/HMS 2023-09-21T14:01:06,243 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS/theta2.txt -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/HMS 2023-09-21T14:01:06,245 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS/theta0.txt -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/HMS 2023-09-21T14:01:06,247 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS/hms -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/HMS 2023-09-21T14:01:06,250 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS/theta1.txt -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/HMS 2023-09-21T14:01:06,251 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS/theta3.txt -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/HMS 2023-09-21T14:01:06,253 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/BioProspector -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:01:06,257 creating build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/ChIPMunk 2023-09-21T14:01:06,258 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ChIPMunk/chipmunk.jar -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/ChIPMunk 2023-09-21T14:01:06,328 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ChIPMunk/ChIPMunk.sh -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/ChIPMunk 2023-09-21T14:01:06,330 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/MotifSampler -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:01:06,355 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/MDmodule -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:01:06,358 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:01:06,360 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/posmo -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:01:06,363 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/AMD.bin -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:01:06,368 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/CreateBackgroundModel -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:01:06,390 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ameme -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:01:06,398 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/clusterwd -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:01:06,401 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/cluster.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,404 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/plot.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,406 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/rank.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,408 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/config.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:01:06,412 creating build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:01:06,413 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/motif2factors.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:01:06,415 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/pfmscan.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:01:06,417 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:01:06,419 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/threshold.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:01:06,421 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/prediction.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:01:06,423 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/match.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:01:06,425 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/maelstrom.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:01:06,427 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/logo.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:01:06,429 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/background.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:01:06,430 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/diff.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:01:06,432 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/location.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:01:06,434 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/cluster.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:01:06,436 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/motifs.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:01:06,438 creating build/bdist.linux-armv7l/wheel/data 2023-09-21T14:01:06,441 creating build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,442 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/ENCODE.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,446 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_urochordates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,448 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_insects.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,451 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_urochordates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,453 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,455 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_nematodes.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,457 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOMER.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,459 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_fungi.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,462 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_plants.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,467 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/IMAGE.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,470 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,482 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/SwissRegulon.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,484 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/RSAT_insects.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,489 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_urochordates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,490 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOMER.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,495 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_nematodes.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,498 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_plants.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,500 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.vertebrate.v3.1.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,503 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.vertebrate.v3.1.factor2motifs.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,506 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,510 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.vertebrate.v5.0.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,525 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_vertebrates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,528 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/RSAT_vertebrates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,541 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_nematodes.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,544 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv11_HUMAN.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,546 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/factorbook.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,549 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_fungi.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,551 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_plants.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,553 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_insects.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,555 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/ENCODE.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,579 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.plant.v1.0.pwm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,583 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_insects.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,585 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv11_MOUSE.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,591 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_fungi.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,594 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_insects.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,597 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_vertebrates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,600 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,609 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_urochordates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,612 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv10_MOUSE.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,619 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/RSAT_plants.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,623 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/RSAT_insects.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,624 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/IMAGE.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,638 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv10_MOUSE.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,640 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/CIS-BP.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,697 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_vertebrates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,704 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_plants.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,709 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_insects.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,711 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_fungi.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,714 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv10_HUMAN.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,717 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_nematodes.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,719 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv10_HUMAN.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,728 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_urochordates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,729 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_urochordates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,731 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.vertebrate.v3.1.pwm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,740 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_fungi.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,744 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_nematodes.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,746 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/CIS-BP.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,761 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_vertebrates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,764 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_plants.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,767 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/SwissRegulon.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,775 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,779 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.invertebrate.v1.0.pwm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,786 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/RSAT_plants.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,788 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_nematodes.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,790 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_plants.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,797 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_fungi.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,800 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_insects.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,803 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.vertebrate.v5.0.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,814 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_vertebrates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,822 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/RSAT_vertebrates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,824 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv11_HUMAN.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,835 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv11_MOUSE.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,838 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,854 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_vertebrates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,860 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/factorbook.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:01:06,868 creating build/bdist.linux-armv7l/wheel/data/__pycache__ 2023-09-21T14:01:06,869 copying build/lib.linux-armv7l-cpython-311/data/__pycache__/__init__.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/data/__pycache__ 2023-09-21T14:01:06,871 creating build/bdist.linux-armv7l/wheel/data/cfg 2023-09-21T14:01:06,872 copying build/lib.linux-armv7l-cpython-311/data/cfg/gimmemotifs.default.cfg -> build/bdist.linux-armv7l/wheel/data/cfg 2023-09-21T14:01:06,875 copying build/lib.linux-armv7l-cpython-311/data/__init__.py -> build/bdist.linux-armv7l/wheel/data 2023-09-21T14:01:06,877 creating build/bdist.linux-armv7l/wheel/data/bg 2023-09-21T14:01:06,878 copying build/lib.linux-armv7l-cpython-311/data/bg/mm9.MotifSampler.bg -> build/bdist.linux-armv7l/wheel/data/bg 2023-09-21T14:01:06,880 copying build/lib.linux-armv7l-cpython-311/data/bg/hg19.MotifSampler.bg -> build/bdist.linux-armv7l/wheel/data/bg 2023-09-21T14:01:06,882 copying build/lib.linux-armv7l-cpython-311/data/bg/mm10.MotifSampler.bg -> build/bdist.linux-armv7l/wheel/data/bg 2023-09-21T14:01:06,885 copying build/lib.linux-armv7l-cpython-311/data/bg/hg18.MotifSampler.bg -> build/bdist.linux-armv7l/wheel/data/bg 2023-09-21T14:01:06,887 copying build/lib.linux-armv7l-cpython-311/data/bg/hg38.MotifSampler.bg -> build/bdist.linux-armv7l/wheel/data/bg 2023-09-21T14:01:06,889 copying build/lib.linux-armv7l-cpython-311/data/bg/xenTro2.MotifSampler.bg -> build/bdist.linux-armv7l/wheel/data/bg 2023-09-21T14:01:06,891 creating build/bdist.linux-armv7l/wheel/data/score_dists 2023-09-21T14:01:06,893 copying build/lib.linux-armv7l-cpython-311/data/score_dists/dic2_mean_sd.txt -> build/bdist.linux-armv7l/wheel/data/score_dists 2023-09-21T14:01:06,895 copying build/lib.linux-armv7l-cpython-311/data/score_dists/total_wic_mean_score_dist.txt -> build/bdist.linux-armv7l/wheel/data/score_dists 2023-09-21T14:01:06,898 copying build/lib.linux-armv7l-cpython-311/data/score_dists/dic2_bg_mean_sd.txt -> build/bdist.linux-armv7l/wheel/data/score_dists 2023-09-21T14:01:06,901 creating build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:01:06,902 copying build/lib.linux-armv7l-cpython-311/data/examples/test.small.fa -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:01:06,905 copying build/lib.linux-armv7l-cpython-311/data/examples/hg19.blood.most_variable.10k.txt -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:01:06,933 copying build/lib.linux-armv7l-cpython-311/data/examples/NRF1.bed -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:01:06,936 copying build/lib.linux-armv7l-cpython-311/data/examples/TAp73alpha.bed -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:01:06,939 copying build/lib.linux-armv7l-cpython-311/data/examples/Gm12878.CTCF.top500.w200.bed -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:01:06,941 copying build/lib.linux-armv7l-cpython-311/data/examples/Gm12878.CTCF.top500.w200.fa -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:01:06,945 copying build/lib.linux-armv7l-cpython-311/data/examples/TAp73alpha.fa -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:01:06,951 copying build/lib.linux-armv7l-cpython-311/data/examples/example.pfm -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:01:06,952 copying build/lib.linux-armv7l-cpython-311/data/examples/hg19.blood.most_variable.1k.txt -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:01:06,956 copying build/lib.linux-armv7l-cpython-311/data/examples/MA0099.3.jaspar -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:01:06,959 creating build/bdist.linux-armv7l/wheel/data/templates 2023-09-21T14:01:06,959 copying build/lib.linux-armv7l-cpython-311/data/templates/cluster_template.jinja.html -> build/bdist.linux-armv7l/wheel/data/templates 2023-09-21T14:01:06,962 copying build/lib.linux-armv7l-cpython-311/data/templates/report_template.jinja.html -> build/bdist.linux-armv7l/wheel/data/templates 2023-09-21T14:01:06,964 copying build/lib.linux-armv7l-cpython-311/data/templates/star_silver.png -> build/bdist.linux-armv7l/wheel/data/templates 2023-09-21T14:01:06,966 copying build/lib.linux-armv7l-cpython-311/data/templates/star.png -> build/bdist.linux-armv7l/wheel/data/templates 2023-09-21T14:01:06,968 copying build/lib.linux-armv7l-cpython-311/data/templates/table.tpl -> build/bdist.linux-armv7l/wheel/data/templates 2023-09-21T14:01:06,971 creating build/bdist.linux-armv7l/wheel/data/templates/sortable 2023-09-21T14:01:06,971 copying build/lib.linux-armv7l-cpython-311/data/templates/sortable/sortable-theme-slick.css -> build/bdist.linux-armv7l/wheel/data/templates/sortable 2023-09-21T14:01:06,973 copying build/lib.linux-armv7l-cpython-311/data/templates/sortable/sortable.min.js -> build/bdist.linux-armv7l/wheel/data/templates/sortable 2023-09-21T14:01:06,975 running install_egg_info 2023-09-21T14:01:07,005 Copying gimmemotifs.egg-info to build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.2-py3.11.egg-info 2023-09-21T14:01:07,015 running install_scripts 2023-09-21T14:01:07,016 creating build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.2.data 2023-09-21T14:01:07,016 creating build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.2.data/scripts 2023-09-21T14:01:07,017 copying build/scripts-3.11/gimme -> build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.2.data/scripts 2023-09-21T14:01:07,019 copying build/scripts-3.11/coverage_table -> build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.2.data/scripts 2023-09-21T14:01:07,021 copying build/scripts-3.11/combine_peaks -> build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.2.data/scripts 2023-09-21T14:01:07,022 changing mode of build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.2.data/scripts/gimme to 755 2023-09-21T14:01:07,023 changing mode of build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.2.data/scripts/coverage_table to 755 2023-09-21T14:01:07,023 changing mode of build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.2.data/scripts/combine_peaks to 755 2023-09-21T14:01:07,082 creating build/bdist.linux-armv7l/wheel/gimmemotifs-0.17.2.dist-info/WHEEL 2023-09-21T14:01:07,084 creating '/tmp/pip-wheel-o_w9bzno/gimmemotifs-0.17.2-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-21T14:01:07,086 adding 'data/__init__.py' 2023-09-21T14:01:07,088 adding 'data/__pycache__/__init__.cpython-310.pyc' 2023-09-21T14:01:07,090 adding 'data/bg/hg18.MotifSampler.bg' 2023-09-21T14:01:07,091 adding 'data/bg/hg19.MotifSampler.bg' 2023-09-21T14:01:07,093 adding 'data/bg/hg38.MotifSampler.bg' 2023-09-21T14:01:07,095 adding 'data/bg/mm10.MotifSampler.bg' 2023-09-21T14:01:07,096 adding 'data/bg/mm9.MotifSampler.bg' 2023-09-21T14:01:07,098 adding 'data/bg/xenTro2.MotifSampler.bg' 2023-09-21T14:01:07,100 adding 'data/cfg/gimmemotifs.default.cfg' 2023-09-21T14:01:07,103 adding 'data/examples/Gm12878.CTCF.top500.w200.bed' 2023-09-21T14:01:07,157 adding 'data/examples/Gm12878.CTCF.top500.w200.fa' 2023-09-21T14:01:07,159 adding 'data/examples/MA0099.3.jaspar' 2023-09-21T14:01:07,163 adding 'data/examples/NRF1.bed' 2023-09-21T14:01:07,168 adding 'data/examples/TAp73alpha.bed' 2023-09-21T14:01:07,279 adding 'data/examples/TAp73alpha.fa' 2023-09-21T14:01:07,282 adding 'data/examples/example.pfm' 2023-09-21T14:01:07,587 adding 'data/examples/hg19.blood.most_variable.10k.txt' 2023-09-21T14:01:07,627 adding 'data/examples/hg19.blood.most_variable.1k.txt' 2023-09-21T14:01:07,630 adding 'data/examples/test.small.fa' 2023-09-21T14:01:07,673 adding 'data/motif_databases/CIS-BP.motif2factors.txt' 2023-09-21T14:01:08,487 adding 'data/motif_databases/CIS-BP.pfm' 2023-09-21T14:01:08,527 adding 'data/motif_databases/ENCODE.motif2factors.txt' 2023-09-21T14:01:08,737 adding 'data/motif_databases/ENCODE.pfm' 2023-09-21T14:01:08,748 adding 'data/motif_databases/HOCOMOCOv10_HUMAN.motif2factors.txt' 2023-09-21T14:01:08,840 adding 'data/motif_databases/HOCOMOCOv10_HUMAN.pfm' 2023-09-21T14:01:08,846 adding 'data/motif_databases/HOCOMOCOv10_MOUSE.motif2factors.txt' 2023-09-21T14:01:08,908 adding 'data/motif_databases/HOCOMOCOv10_MOUSE.pfm' 2023-09-21T14:01:08,913 adding 'data/motif_databases/HOCOMOCOv11_HUMAN.motif2factors.txt' 2023-09-21T14:01:08,951 adding 'data/motif_databases/HOCOMOCOv11_HUMAN.pfm' 2023-09-21T14:01:08,956 adding 'data/motif_databases/HOCOMOCOv11_MOUSE.motif2factors.txt' 2023-09-21T14:01:08,986 adding 'data/motif_databases/HOCOMOCOv11_MOUSE.pfm' 2023-09-21T14:01:08,992 adding 'data/motif_databases/HOMER.motif2factors.txt' 2023-09-21T14:01:09,031 adding 'data/motif_databases/HOMER.pfm' 2023-09-21T14:01:09,038 adding 'data/motif_databases/IMAGE.motif2factors.txt' 2023-09-21T14:01:09,213 adding 'data/motif_databases/IMAGE.pfm' 2023-09-21T14:01:09,226 adding 'data/motif_databases/JASPAR2018.motif2factors.txt' 2023-09-21T14:01:09,333 adding 'data/motif_databases/JASPAR2018.pfm' 2023-09-21T14:01:09,339 adding 'data/motif_databases/JASPAR2018_fungi.motif2factors.txt' 2023-09-21T14:01:09,349 adding 'data/motif_databases/JASPAR2018_fungi.pfm' 2023-09-21T14:01:09,350 adding 'data/motif_databases/JASPAR2018_insects.motif2factors.txt' 2023-09-21T14:01:09,356 adding 'data/motif_databases/JASPAR2018_insects.pfm' 2023-09-21T14:01:09,357 adding 'data/motif_databases/JASPAR2018_nematodes.motif2factors.txt' 2023-09-21T14:01:09,359 adding 'data/motif_databases/JASPAR2018_nematodes.pfm' 2023-09-21T14:01:09,362 adding 'data/motif_databases/JASPAR2018_plants.motif2factors.txt' 2023-09-21T14:01:09,402 adding 'data/motif_databases/JASPAR2018_plants.pfm' 2023-09-21T14:01:09,405 adding 'data/motif_databases/JASPAR2018_urochordates.motif2factors.txt' 2023-09-21T14:01:09,406 adding 'data/motif_databases/JASPAR2018_urochordates.pfm' 2023-09-21T14:01:09,409 adding 'data/motif_databases/JASPAR2018_vertebrates.motif2factors.txt' 2023-09-21T14:01:09,460 adding 'data/motif_databases/JASPAR2018_vertebrates.pfm' 2023-09-21T14:01:09,472 adding 'data/motif_databases/JASPAR2020.motif2factors.txt' 2023-09-21T14:01:09,643 adding 'data/motif_databases/JASPAR2020.pfm' 2023-09-21T14:01:09,651 adding 'data/motif_databases/JASPAR2020_fungi.motif2factors.txt' 2023-09-21T14:01:09,663 adding 'data/motif_databases/JASPAR2020_fungi.pfm' 2023-09-21T14:01:09,665 adding 'data/motif_databases/JASPAR2020_insects.motif2factors.txt' 2023-09-21T14:01:09,672 adding 'data/motif_databases/JASPAR2020_insects.pfm' 2023-09-21T14:01:09,674 adding 'data/motif_databases/JASPAR2020_nematodes.motif2factors.txt' 2023-09-21T14:01:09,677 adding 'data/motif_databases/JASPAR2020_nematodes.pfm' 2023-09-21T14:01:09,680 adding 'data/motif_databases/JASPAR2020_plants.motif2factors.txt' 2023-09-21T14:01:09,734 adding 'data/motif_databases/JASPAR2020_plants.pfm' 2023-09-21T14:01:09,737 adding 'data/motif_databases/JASPAR2020_urochordates.motif2factors.txt' 2023-09-21T14:01:09,738 adding 'data/motif_databases/JASPAR2020_urochordates.pfm' 2023-09-21T14:01:09,743 adding 'data/motif_databases/JASPAR2020_vertebrates.motif2factors.txt' 2023-09-21T14:01:09,832 adding 'data/motif_databases/JASPAR2020_vertebrates.pfm' 2023-09-21T14:01:09,853 adding 'data/motif_databases/JASPAR2022.motif2factors.txt' 2023-09-21T14:01:10,038 adding 'data/motif_databases/JASPAR2022.pfm' 2023-09-21T14:01:10,045 adding 'data/motif_databases/JASPAR2022_fungi.motif2factors.txt' 2023-09-21T14:01:10,056 adding 'data/motif_databases/JASPAR2022_fungi.pfm' 2023-09-21T14:01:10,058 adding 'data/motif_databases/JASPAR2022_insects.motif2factors.txt' 2023-09-21T14:01:10,065 adding 'data/motif_databases/JASPAR2022_insects.pfm' 2023-09-21T14:01:10,066 adding 'data/motif_databases/JASPAR2022_nematodes.motif2factors.txt' 2023-09-21T14:01:10,070 adding 'data/motif_databases/JASPAR2022_nematodes.pfm' 2023-09-21T14:01:10,076 adding 'data/motif_databases/JASPAR2022_plants.motif2factors.txt' 2023-09-21T14:01:10,140 adding 'data/motif_databases/JASPAR2022_plants.pfm' 2023-09-21T14:01:10,143 adding 'data/motif_databases/JASPAR2022_urochordates.motif2factors.txt' 2023-09-21T14:01:10,158 adding 'data/motif_databases/JASPAR2022_urochordates.pfm' 2023-09-21T14:01:10,166 adding 'data/motif_databases/JASPAR2022_vertebrates.motif2factors.txt' 2023-09-21T14:01:10,247 adding 'data/motif_databases/JASPAR2022_vertebrates.pfm' 2023-09-21T14:01:10,250 adding 'data/motif_databases/RSAT_insects.motif2factors.txt' 2023-09-21T14:01:10,275 adding 'data/motif_databases/RSAT_insects.pfm' 2023-09-21T14:01:10,277 adding 'data/motif_databases/RSAT_plants.motif2factors.txt' 2023-09-21T14:01:10,308 adding 'data/motif_databases/RSAT_plants.pfm' 2023-09-21T14:01:10,310 adding 'data/motif_databases/RSAT_vertebrates.motif2factors.txt' 2023-09-21T14:01:10,519 adding 'data/motif_databases/RSAT_vertebrates.pfm' 2023-09-21T14:01:10,529 adding 'data/motif_databases/SwissRegulon.motif2factors.txt' 2023-09-21T14:01:10,591 adding 'data/motif_databases/SwissRegulon.pfm' 2023-09-21T14:01:10,595 adding 'data/motif_databases/factorbook.motif2factors.txt' 2023-09-21T14:01:10,627 adding 'data/motif_databases/factorbook.pfm' 2023-09-21T14:01:10,661 adding 'data/motif_databases/gimme.invertebrate.v1.0.pwm' 2023-09-21T14:01:10,679 adding 'data/motif_databases/gimme.plant.v1.0.pwm' 2023-09-21T14:01:10,685 adding 'data/motif_databases/gimme.vertebrate.v3.1.factor2motifs.txt' 2023-09-21T14:01:10,689 adding 'data/motif_databases/gimme.vertebrate.v3.1.motif2factors.txt' 2023-09-21T14:01:10,794 adding 'data/motif_databases/gimme.vertebrate.v3.1.pwm' 2023-09-21T14:01:10,826 adding 'data/motif_databases/gimme.vertebrate.v5.0.motif2factors.txt' 2023-09-21T14:01:10,994 adding 'data/motif_databases/gimme.vertebrate.v5.0.pfm' 2023-09-21T14:01:11,003 adding 'data/score_dists/dic2_bg_mean_sd.txt' 2023-09-21T14:01:11,005 adding 'data/score_dists/dic2_mean_sd.txt' 2023-09-21T14:01:11,006 adding 'data/score_dists/total_wic_mean_score_dist.txt' 2023-09-21T14:01:11,008 adding 'data/templates/cluster_template.jinja.html' 2023-09-21T14:01:11,010 adding 'data/templates/report_template.jinja.html' 2023-09-21T14:01:11,012 adding 'data/templates/star.png' 2023-09-21T14:01:11,014 adding 'data/templates/star_silver.png' 2023-09-21T14:01:11,016 adding 'data/templates/table.tpl' 2023-09-21T14:01:11,018 adding 'data/templates/sortable/sortable-theme-slick.css' 2023-09-21T14:01:11,019 adding 'data/templates/sortable/sortable.min.js' 2023-09-21T14:01:11,021 adding 'gimmemotifs/__init__.py' 2023-09-21T14:01:11,023 adding 'gimmemotifs/_version.py' 2023-09-21T14:01:11,025 adding 'gimmemotifs/background.py' 2023-09-21T14:01:11,028 adding 'gimmemotifs/c_metrics.c' 2023-09-21T14:01:11,038 adding 'gimmemotifs/c_metrics.cpython-311-arm-linux-gnueabihf.so' 2023-09-21T14:01:11,041 adding 'gimmemotifs/cli.py' 2023-09-21T14:01:11,044 adding 'gimmemotifs/cluster.py' 2023-09-21T14:01:11,050 adding 'gimmemotifs/comparison.py' 2023-09-21T14:01:11,052 adding 'gimmemotifs/config.py' 2023-09-21T14:01:11,055 adding 'gimmemotifs/denovo.py' 2023-09-21T14:01:11,057 adding 'gimmemotifs/fasta.py' 2023-09-21T14:01:11,061 adding 'gimmemotifs/maelstrom.py' 2023-09-21T14:01:11,063 adding 'gimmemotifs/moap.py' 2023-09-21T14:01:11,067 adding 'gimmemotifs/orthologs.py' 2023-09-21T14:01:11,069 adding 'gimmemotifs/plot.py' 2023-09-21T14:01:11,071 adding 'gimmemotifs/prediction.py' 2023-09-21T14:01:11,073 adding 'gimmemotifs/preprocessing.py' 2023-09-21T14:01:11,075 adding 'gimmemotifs/rank.py' 2023-09-21T14:01:11,079 adding 'gimmemotifs/report.py' 2023-09-21T14:01:11,081 adding 'gimmemotifs/rocmetrics.py' 2023-09-21T14:01:11,087 adding 'gimmemotifs/scanner.py' 2023-09-21T14:01:11,089 adding 'gimmemotifs/stats.py' 2023-09-21T14:01:11,093 adding 'gimmemotifs/utils.py' 2023-09-21T14:01:11,094 adding 'gimmemotifs/validation.py' 2023-09-21T14:01:11,096 adding 'gimmemotifs/commands/__init__.py' 2023-09-21T14:01:11,097 adding 'gimmemotifs/commands/background.py' 2023-09-21T14:01:11,098 adding 'gimmemotifs/commands/cluster.py' 2023-09-21T14:01:11,100 adding 'gimmemotifs/commands/diff.py' 2023-09-21T14:01:11,101 adding 'gimmemotifs/commands/location.py' 2023-09-21T14:01:11,102 adding 'gimmemotifs/commands/logo.py' 2023-09-21T14:01:11,103 adding 'gimmemotifs/commands/maelstrom.py' 2023-09-21T14:01:11,105 adding 'gimmemotifs/commands/match.py' 2023-09-21T14:01:11,106 adding 'gimmemotifs/commands/motif2factors.py' 2023-09-21T14:01:11,108 adding 'gimmemotifs/commands/motifs.py' 2023-09-21T14:01:11,109 adding 'gimmemotifs/commands/pfmscan.py' 2023-09-21T14:01:11,110 adding 'gimmemotifs/commands/prediction.py' 2023-09-21T14:01:11,112 adding 'gimmemotifs/commands/threshold.py' 2023-09-21T14:01:11,114 adding 'gimmemotifs/db/__init__.py' 2023-09-21T14:01:11,128 adding 'gimmemotifs/included_tools/AMD.bin' 2023-09-21T14:01:11,138 adding 'gimmemotifs/included_tools/BioProspector' 2023-09-21T14:01:11,394 adding 'gimmemotifs/included_tools/CreateBackgroundModel' 2023-09-21T14:01:11,414 adding 'gimmemotifs/included_tools/MDmodule' 2023-09-21T14:01:11,705 adding 'gimmemotifs/included_tools/MotifSampler' 2023-09-21T14:01:11,719 adding 'gimmemotifs/included_tools/__init__.py' 2023-09-21T14:01:11,783 adding 'gimmemotifs/included_tools/ameme' 2023-09-21T14:01:11,791 adding 'gimmemotifs/included_tools/clusterwd' 2023-09-21T14:01:11,796 adding 'gimmemotifs/included_tools/posmo' 2023-09-21T14:01:11,798 adding 'gimmemotifs/included_tools/ChIPMunk/ChIPMunk.sh' 2023-09-21T14:01:12,350 adding 'gimmemotifs/included_tools/ChIPMunk/chipmunk.jar' 2023-09-21T14:01:12,405 adding 'gimmemotifs/included_tools/HMS/hms' 2023-09-21T14:01:12,406 adding 'gimmemotifs/included_tools/HMS/theta0.txt' 2023-09-21T14:01:12,407 adding 'gimmemotifs/included_tools/HMS/theta1.txt' 2023-09-21T14:01:12,408 adding 'gimmemotifs/included_tools/HMS/theta2.txt' 2023-09-21T14:01:12,410 adding 'gimmemotifs/included_tools/HMS/theta3.txt' 2023-09-21T14:01:12,415 adding 'gimmemotifs/motif/__init__.py' 2023-09-21T14:01:12,417 adding 'gimmemotifs/motif/_comparison.py' 2023-09-21T14:01:12,419 adding 'gimmemotifs/motif/_plotting.py' 2023-09-21T14:01:12,420 adding 'gimmemotifs/motif/_scanning.py' 2023-09-21T14:01:12,422 adding 'gimmemotifs/tools/__init__.py' 2023-09-21T14:01:12,424 adding 'gimmemotifs/tools/amd.py' 2023-09-21T14:01:12,425 adding 'gimmemotifs/tools/bioprospector.py' 2023-09-21T14:01:12,426 adding 'gimmemotifs/tools/chipmunk.py' 2023-09-21T14:01:12,428 adding 'gimmemotifs/tools/dinamo.py' 2023-09-21T14:01:12,429 adding 'gimmemotifs/tools/dreme.py' 2023-09-21T14:01:12,430 adding 'gimmemotifs/tools/gadem.py' 2023-09-21T14:01:12,432 adding 'gimmemotifs/tools/hms.py' 2023-09-21T14:01:12,433 adding 'gimmemotifs/tools/homer.py' 2023-09-21T14:01:12,435 adding 'gimmemotifs/tools/improbizer.py' 2023-09-21T14:01:12,436 adding 'gimmemotifs/tools/jaspar.py' 2023-09-21T14:01:12,437 adding 'gimmemotifs/tools/mdmodule.py' 2023-09-21T14:01:12,439 adding 'gimmemotifs/tools/meme.py' 2023-09-21T14:01:12,440 adding 'gimmemotifs/tools/memew.py' 2023-09-21T14:01:12,442 adding 'gimmemotifs/tools/motifprogram.py' 2023-09-21T14:01:12,443 adding 'gimmemotifs/tools/motifsampler.py' 2023-09-21T14:01:12,445 adding 'gimmemotifs/tools/posmo.py' 2023-09-21T14:01:12,446 adding 'gimmemotifs/tools/prosampler.py' 2023-09-21T14:01:12,447 adding 'gimmemotifs/tools/rpmcmc.py' 2023-09-21T14:01:12,449 adding 'gimmemotifs/tools/trawler.py' 2023-09-21T14:01:12,450 adding 'gimmemotifs/tools/weeder.py' 2023-09-21T14:01:12,451 adding 'gimmemotifs/tools/xxmotif.py' 2023-09-21T14:01:12,453 adding 'gimmemotifs/tools/yamda.py' 2023-09-21T14:01:12,455 adding 'gimmemotifs-0.17.2.data/scripts/combine_peaks' 2023-09-21T14:01:12,456 adding 'gimmemotifs-0.17.2.data/scripts/coverage_table' 2023-09-21T14:01:12,458 adding 'gimmemotifs-0.17.2.data/scripts/gimme' 2023-09-21T14:01:12,460 adding 'gimmemotifs-0.17.2.dist-info/COPYING' 2023-09-21T14:01:12,461 adding 'gimmemotifs-0.17.2.dist-info/METADATA' 2023-09-21T14:01:12,462 adding 'gimmemotifs-0.17.2.dist-info/WHEEL' 2023-09-21T14:01:12,463 adding 'gimmemotifs-0.17.2.dist-info/top_level.txt' 2023-09-21T14:01:12,466 adding 'gimmemotifs-0.17.2.dist-info/RECORD' 2023-09-21T14:01:12,575 removing build/bdist.linux-armv7l/wheel 2023-09-21T14:01:12,772 Building wheel for gimmemotifs (setup.py): finished with status 'done' 2023-09-21T14:01:12,906 Created wheel for gimmemotifs: filename=gimmemotifs-0.17.2-cp311-cp311-linux_armv7l.whl size=11227575 sha256=8e9c3606ab2dda005608a5421a056d0eae9d0808b82b8df4e027ce9d2699ae86 2023-09-21T14:01:12,907 Stored in directory: /tmp/pip-ephem-wheel-cache-mngaimb3/wheels/34/39/b9/d0de94043db8cc58d6098d25eb5804d67fca288b1e7fb84c24 2023-09-21T14:01:12,927 Successfully built gimmemotifs 2023-09-21T14:01:13,178 Removed build tracker: '/tmp/pip-build-tracker-8jla3ojp'