2023-09-21T14:01:31,670 Created temporary directory: /tmp/pip-build-tracker-cz3s_ctr 2023-09-21T14:01:31,671 Initialized build tracking at /tmp/pip-build-tracker-cz3s_ctr 2023-09-21T14:01:31,671 Created build tracker: /tmp/pip-build-tracker-cz3s_ctr 2023-09-21T14:01:31,672 Entered build tracker: /tmp/pip-build-tracker-cz3s_ctr 2023-09-21T14:01:31,673 Created temporary directory: /tmp/pip-wheel-0f3zj9in 2023-09-21T14:01:31,676 Created temporary directory: /tmp/pip-ephem-wheel-cache-odx905m4 2023-09-21T14:01:31,700 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-21T14:01:31,704 2 location(s) to search for versions of gimmemotifs: 2023-09-21T14:01:31,704 * https://pypi.org/simple/gimmemotifs/ 2023-09-21T14:01:31,704 * https://www.piwheels.org/simple/gimmemotifs/ 2023-09-21T14:01:31,705 Fetching project page and analyzing links: https://pypi.org/simple/gimmemotifs/ 2023-09-21T14:01:31,705 Getting page https://pypi.org/simple/gimmemotifs/ 2023-09-21T14:01:31,707 Found index url https://pypi.org/simple/ 2023-09-21T14:01:31,845 Fetched page https://pypi.org/simple/gimmemotifs/ as application/vnd.pypi.simple.v1+json 2023-09-21T14:01:31,850 Found link https://files.pythonhosted.org/packages/3b/66/216440ec9d7e3c075bd26b6ab13132bcebb42fc2dd20a8886a6bec347976/gimmemotifs-0.8.9.1.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.8.9.1 2023-09-21T14:01:31,851 Found link https://files.pythonhosted.org/packages/9a/64/35a8f9fdbf3d212a5a4a797bf862df63a3b53e1858b1d18480a4f7cfe1e6/gimmemotifs-0.9.0.2.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.9.0.2 2023-09-21T14:01:31,852 Found link https://files.pythonhosted.org/packages/65/94/7402fe33e86c472e392ac203838c4e6d2c07a3dc421998d5e1c38dbcdcac/gimmemotifs-0.9.0.3.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.9.0.3 2023-09-21T14:01:31,852 Found link https://files.pythonhosted.org/packages/99/73/fc665e610b200b170a2701ecb2d298b8f51c9792e44e12b47a803ed1cf9e/gimmemotifs-0.10.0b1.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.10.0b1 2023-09-21T14:01:31,853 Found link https://files.pythonhosted.org/packages/e5/3a/cd3a48bbd49c2cdf325616da57ebe50b12135a4f60111cc4960573f29524/gimmemotifs-0.10.0b2.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.10.0b2 2023-09-21T14:01:31,853 Found link https://files.pythonhosted.org/packages/98/be/6fdb2557d262d2dfd365fa8502205c6a1f72cfa8029d0d9c3fdb9420f3ff/gimmemotifs-0.10.0b4.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.10.0b4 2023-09-21T14:01:31,854 Found link https://files.pythonhosted.org/packages/d3/83/2ffdbeb78227407f2ac3f4390f27257630709a3653a2c42926b181381f75/gimmemotifs-0.10.0b5.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.10.0b5 2023-09-21T14:01:31,855 Found link https://files.pythonhosted.org/packages/90/2c/f9493aeaaf1cf10742d7a7bf251dfbfe4a82d53f5222379b0466ac8cacfe/gimmemotifs-0.10.0b6.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.10.0b6 2023-09-21T14:01:31,856 Found link https://files.pythonhosted.org/packages/82/a3/34326512c0e9418729124bf9f5fd5da54a9792d5e99e84fe0653f3c38d2e/gimmemotifs-0.11.0b0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.11.0b0 2023-09-21T14:01:31,856 Found link https://files.pythonhosted.org/packages/6c/b7/f04441424da981f03b69c21f2aa534aa4c6cee7aaea4a5e6b1887116bb08/gimmemotifs-0.11.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.11.0 2023-09-21T14:01:31,857 Found link https://files.pythonhosted.org/packages/e9/c6/6b7e7069dbadc7d14ddab5483ef1c98e7532a3a92d66d89ef5cb59d0ac7a/gimmemotifs-0.11.1.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.11.1 2023-09-21T14:01:31,858 Found link https://files.pythonhosted.org/packages/53/5b/9251735efaf7a76ed7694c03a7a47cc21290f71d3958581a425da4682c47/gimmemotifs-0.12.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.12.0 2023-09-21T14:01:31,858 Found link https://files.pythonhosted.org/packages/66/76/ec3ff69655c4bbb8b606db6f45608125fe91e8568dd5858187f8b1b9379c/gimmemotifs-0.13.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.13.0 2023-09-21T14:01:31,859 Found link https://files.pythonhosted.org/packages/80/e9/84e4a077680c2c6e2baaca829ac660e910014c0aa57cd5dc915564a5a001/gimmemotifs-0.13.1.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.13.1 2023-09-21T14:01:31,860 Found link https://files.pythonhosted.org/packages/24/d1/8505a7798bf8e06f4a0b7a54b51bbcd9c9e5361d0dd1f3a89e78f2784c65/gimmemotifs-0.14.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.14.0 2023-09-21T14:01:31,860 Found link https://files.pythonhosted.org/packages/ef/4c/1a19f42d88f7fb47a1589a0c535a9dff9d75d1317a8a1a099ef0195348f9/gimmemotifs-0.14.2.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.14.2 2023-09-21T14:01:31,861 Found link https://files.pythonhosted.org/packages/1a/7d/113454d4ef0e960500067e0e4a0d0ed105318749c2e18f5be6542f22df48/gimmemotifs-0.14.3.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.14.3 2023-09-21T14:01:31,862 Found link https://files.pythonhosted.org/packages/f6/71/681a72802e005601ad8da3b695ada4eea8e56e8bd1f14d42d4d7248a24a4/gimmemotifs-0.14.4.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.14.4 2023-09-21T14:01:31,862 Found link https://files.pythonhosted.org/packages/5f/d9/43302fdb777ca8bad9739d81804644090b25011be4a0d2f99188a8849b40/gimmemotifs-0.15.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.15.0 2023-09-21T14:01:31,863 Found link https://files.pythonhosted.org/packages/de/a5/9a3804dda5730092769519f38a7bc736488cff60cf7c8f0f2f71eeeca3e4/gimmemotifs-0.15.2.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.15.2 2023-09-21T14:01:31,863 Found link https://files.pythonhosted.org/packages/0c/bd/11e957138342aef4b2539818d1c548fce634e7b323961cdd9beedba3879c/gimmemotifs-0.15.3.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.15.3 2023-09-21T14:01:31,864 Found link https://files.pythonhosted.org/packages/2b/71/faeeb7d734b4163500ad2e62fc131e66f912a722b7b9f6ad902f3ed62923/gimmemotifs-0.16.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.16.0 2023-09-21T14:01:31,865 Found link https://files.pythonhosted.org/packages/90/56/831b7548562dce57014d87dc9731c4b5ec0747c74ce2dd30966e2e812c5e/gimmemotifs-0.17.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.17.0 2023-09-21T14:01:31,865 Found link https://files.pythonhosted.org/packages/c5/c3/2dbd6363f025cf4b06d938479a9b35dab0ca91e59259b16e0bd6eef8bea0/gimmemotifs-0.17.2.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.17.2 2023-09-21T14:01:31,866 Found link https://files.pythonhosted.org/packages/23/b1/31f5061ff2749292af7c70ec4f1c81afd1991ea4a2cb62c4e5235d3f1f1c/gimmemotifs-0.18.0.tar.gz (from https://pypi.org/simple/gimmemotifs/), version: 0.18.0 2023-09-21T14:01:31,866 Fetching project page and analyzing links: https://www.piwheels.org/simple/gimmemotifs/ 2023-09-21T14:01:31,867 Getting page https://www.piwheels.org/simple/gimmemotifs/ 2023-09-21T14:01:31,868 Found index url https://www.piwheels.org/simple/ 2023-09-21T14:01:47,006 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='www.piwheels.org', port=443): Read timed out. (read timeout=15)")': /simple/gimmemotifs/ 2023-09-21T14:01:52,678 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLZeroReturnError(6, 'TLS/SSL connection has been closed (EOF) (_ssl.c:992)'))': /simple/gimmemotifs/ 2023-09-21T14:01:58,858 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLZeroReturnError(6, 'TLS/SSL connection has been closed (EOF) (_ssl.c:992)'))': /simple/gimmemotifs/ 2023-09-21T14:02:16,058 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='www.piwheels.org', port=443): Read timed out. (read timeout=15)")': /simple/gimmemotifs/ 2023-09-21T14:02:35,261 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='www.piwheels.org', port=443): Read timed out. (read timeout=15)")': /simple/gimmemotifs/ 2023-09-21T14:02:50,444 Could not fetch URL https://www.piwheels.org/simple/gimmemotifs/: connection error: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/gimmemotifs/ (Caused by ReadTimeoutError("HTTPSConnectionPool(host='www.piwheels.org', port=443): Read timed out. (read timeout=15)")) - skipping 2023-09-21T14:02:50,451 Skipping link: not a file: https://www.piwheels.org/simple/gimmemotifs/ 2023-09-21T14:02:50,452 Skipping link: not a file: https://pypi.org/simple/gimmemotifs/ 2023-09-21T14:02:50,519 Given no hashes to check 1 links for project 'gimmemotifs': discarding no candidates 2023-09-21T14:02:50,548 Collecting gimmemotifs==0.18.0 2023-09-21T14:02:50,551 Created temporary directory: /tmp/pip-unpack-55aq0wkn 2023-09-21T14:02:51,021 Downloading gimmemotifs-0.18.0.tar.gz (12.2 MB) 2023-09-21T14:02:54,343 Added gimmemotifs==0.18.0 from https://files.pythonhosted.org/packages/23/b1/31f5061ff2749292af7c70ec4f1c81afd1991ea4a2cb62c4e5235d3f1f1c/gimmemotifs-0.18.0.tar.gz to build tracker '/tmp/pip-build-tracker-cz3s_ctr' 2023-09-21T14:02:54,345 Running setup.py (path:/tmp/pip-wheel-0f3zj9in/gimmemotifs_4a4be1b2a39b4ec49c77231ab32c56b2/setup.py) egg_info for package gimmemotifs 2023-09-21T14:02:54,346 Created temporary directory: /tmp/pip-pip-egg-info-1hokjpp2 2023-09-21T14:02:54,347 Preparing metadata (setup.py): started 2023-09-21T14:02:54,348 Running command python setup.py egg_info 2023-09-21T14:02:55,580 running egg_info 2023-09-21T14:02:55,582 creating /tmp/pip-pip-egg-info-1hokjpp2/gimmemotifs.egg-info 2023-09-21T14:02:55,605 writing /tmp/pip-pip-egg-info-1hokjpp2/gimmemotifs.egg-info/PKG-INFO 2023-09-21T14:02:55,609 writing dependency_links to /tmp/pip-pip-egg-info-1hokjpp2/gimmemotifs.egg-info/dependency_links.txt 2023-09-21T14:02:55,612 writing requirements to /tmp/pip-pip-egg-info-1hokjpp2/gimmemotifs.egg-info/requires.txt 2023-09-21T14:02:55,613 writing top-level names to /tmp/pip-pip-egg-info-1hokjpp2/gimmemotifs.egg-info/top_level.txt 2023-09-21T14:02:55,614 writing manifest file '/tmp/pip-pip-egg-info-1hokjpp2/gimmemotifs.egg-info/SOURCES.txt' 2023-09-21T14:02:55,719 reading manifest file '/tmp/pip-pip-egg-info-1hokjpp2/gimmemotifs.egg-info/SOURCES.txt' 2023-09-21T14:02:55,720 reading manifest template 'MANIFEST.in' 2023-09-21T14:02:55,722 no previously-included directories found matching 'test/' 2023-09-21T14:02:55,737 warning: no previously-included files found matching 'scripts/download_motif_databases.py' 2023-09-21T14:02:55,738 warning: no previously-included files found matching 'scripts/gimme_benchmark' 2023-09-21T14:02:55,738 adding license file 'COPYING' 2023-09-21T14:02:55,746 writing manifest file '/tmp/pip-pip-egg-info-1hokjpp2/gimmemotifs.egg-info/SOURCES.txt' 2023-09-21T14:02:55,857 Preparing metadata (setup.py): finished with status 'done' 2023-09-21T14:02:55,861 Source in /tmp/pip-wheel-0f3zj9in/gimmemotifs_4a4be1b2a39b4ec49c77231ab32c56b2 has version 0.18.0, which satisfies requirement gimmemotifs==0.18.0 from https://files.pythonhosted.org/packages/23/b1/31f5061ff2749292af7c70ec4f1c81afd1991ea4a2cb62c4e5235d3f1f1c/gimmemotifs-0.18.0.tar.gz 2023-09-21T14:02:55,862 Removed gimmemotifs==0.18.0 from https://files.pythonhosted.org/packages/23/b1/31f5061ff2749292af7c70ec4f1c81afd1991ea4a2cb62c4e5235d3f1f1c/gimmemotifs-0.18.0.tar.gz from build tracker '/tmp/pip-build-tracker-cz3s_ctr' 2023-09-21T14:02:55,867 Created temporary directory: /tmp/pip-unpack-i4izx0d8 2023-09-21T14:02:55,868 Created temporary directory: /tmp/pip-unpack-h1_8ctx4 2023-09-21T14:02:55,905 Building wheels for collected packages: gimmemotifs 2023-09-21T14:02:55,909 Created temporary directory: /tmp/pip-wheel-pujip_xz 2023-09-21T14:02:55,910 Building wheel for gimmemotifs (setup.py): started 2023-09-21T14:02:55,912 Destination directory: /tmp/pip-wheel-pujip_xz 2023-09-21T14:02:55,912 Running command python setup.py bdist_wheel 2023-09-21T14:02:56,985 running bdist_wheel 2023-09-21T14:02:57,079 running build 2023-09-21T14:02:57,079 running build_py 2023-09-21T14:02:57,080 creating build 2023-09-21T14:02:57,081 creating build/src 2023-09-21T14:02:57,082 copying src/README -> build/src 2023-09-21T14:02:57,083 copying src/COPYING -> build/src 2023-09-21T14:02:57,085 creating build/src/HMS 2023-09-21T14:02:57,086 copying src/HMS/theta0.txt -> build/src/HMS 2023-09-21T14:02:57,088 copying src/HMS/theta1.txt -> build/src/HMS 2023-09-21T14:02:57,090 copying src/HMS/theta2.txt -> build/src/HMS 2023-09-21T14:02:57,091 copying src/HMS/theta3.txt -> build/src/HMS 2023-09-21T14:02:57,093 copying src/HMS/hms -> build/src/HMS 2023-09-21T14:02:57,097 creating build/src/MDmodule 2023-09-21T14:02:57,098 copying src/MDmodule/MDmodule.c -> build/src/MDmodule 2023-09-21T14:02:57,101 copying src/MDmodule/COPYING -> build/src/MDmodule 2023-09-21T14:02:57,103 creating build/src/AMD 2023-09-21T14:02:57,104 copying src/AMD/AMD.bin -> build/src/AMD 2023-09-21T14:02:57,108 creating build/src/posmo 2023-09-21T14:02:57,108 copying src/posmo/clusterwd -> build/src/posmo 2023-09-21T14:02:57,111 copying src/posmo/posmo -> build/src/posmo 2023-09-21T14:02:57,114 creating build/src/Improbizer 2023-09-21T14:02:57,115 copying src/Improbizer/ameme_x86_64 -> build/src/Improbizer 2023-09-21T14:02:57,123 copying src/Improbizer/ameme_i386 -> build/src/Improbizer 2023-09-21T14:02:57,131 creating build/src/MotifSampler 2023-09-21T14:02:57,132 copying src/MotifSampler/MotifSampler_x86_64 -> build/src/MotifSampler 2023-09-21T14:02:57,159 copying src/MotifSampler/MotifSampler_i386 -> build/src/MotifSampler 2023-09-21T14:02:57,189 copying src/MotifSampler/CreateBackgroundModel_x86_64 -> build/src/MotifSampler 2023-09-21T14:02:57,222 copying src/MotifSampler/CreateBackgroundModel_i386 -> build/src/MotifSampler 2023-09-21T14:02:57,241 creating build/src/ChIPMunk 2023-09-21T14:02:57,242 copying src/ChIPMunk/ChIPMunk.sh -> build/src/ChIPMunk 2023-09-21T14:02:57,244 copying src/ChIPMunk/chipmunk.jar -> build/src/ChIPMunk 2023-09-21T14:02:57,326 creating build/src/BioProspector 2023-09-21T14:02:57,328 copying src/BioProspector/COPYING -> build/src/BioProspector 2023-09-21T14:02:57,330 copying src/BioProspector/BioProspector.c -> build/src/BioProspector 2023-09-21T14:02:57,333 creating build/lib.linux-armv7l-cpython-311 2023-09-21T14:02:57,334 creating build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:02:57,335 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-21T14:02:58,133 compiling BioProspector... ok 2023-09-21T14:02:58,916 compiling MDmodule... ok 2023-09-21T14:02:58,917 copying src/AMD/AMD.bin -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-21T14:02:58,921 copying build/src/BioProspector/BioProspector -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-21T14:02:58,925 copying build/src/MDmodule/MDmodule -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-21T14:02:58,928 copying src/posmo/posmo -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-21T14:02:58,935 copying src/posmo/clusterwd -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-21T14:02:58,938 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ChIPMunk 2023-09-21T14:02:58,939 copying build/src/ChIPMunk/ChIPMunk.sh -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ChIPMunk 2023-09-21T14:02:58,941 copying build/src/ChIPMunk/chipmunk.jar -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ChIPMunk 2023-09-21T14:02:59,014 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS 2023-09-21T14:02:59,015 copying build/src/HMS/theta0.txt -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS 2023-09-21T14:02:59,017 copying build/src/HMS/theta1.txt -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS 2023-09-21T14:02:59,019 copying build/src/HMS/theta2.txt -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS 2023-09-21T14:02:59,020 copying build/src/HMS/theta3.txt -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS 2023-09-21T14:02:59,022 copying build/src/HMS/hms -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS 2023-09-21T14:02:59,042 copying build/src/MotifSampler/MotifSampler_x86_64 -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/MotifSampler 2023-09-21T14:02:59,078 copying build/src/MotifSampler/CreateBackgroundModel_x86_64 -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/CreateBackgroundModel 2023-09-21T14:02:59,102 copying build/src/Improbizer/ameme_x86_64 -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ameme 2023-09-21T14:02:59,115 copying gimmemotifs/stats.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:02:59,117 copying gimmemotifs/preprocessing.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:02:59,120 copying gimmemotifs/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:02:59,121 copying gimmemotifs/report.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:02:59,124 copying gimmemotifs/_version.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:02:59,125 copying gimmemotifs/utils.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:02:59,128 copying gimmemotifs/rocmetrics.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:02:59,130 copying gimmemotifs/plot.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:02:59,133 copying gimmemotifs/comparison.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:02:59,136 copying gimmemotifs/cli.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:02:59,138 copying gimmemotifs/orthologs.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:02:59,141 copying gimmemotifs/fasta.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:02:59,143 copying gimmemotifs/config.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:02:59,145 copying gimmemotifs/background.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:02:59,148 creating build/lib.linux-armv7l-cpython-311/data 2023-09-21T14:02:59,149 copying data/__init__.py -> build/lib.linux-armv7l-cpython-311/data 2023-09-21T14:02:59,151 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/maelstrom 2023-09-21T14:02:59,152 copying gimmemotifs/maelstrom/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/maelstrom 2023-09-21T14:02:59,154 copying gimmemotifs/maelstrom/moap.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/maelstrom 2023-09-21T14:02:59,157 copying gimmemotifs/maelstrom/rank.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/maelstrom 2023-09-21T14:02:59,160 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,161 copying gimmemotifs/tools/meme.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,163 copying gimmemotifs/tools/chipmunk.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,165 copying gimmemotifs/tools/memew.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,167 copying gimmemotifs/tools/dreme.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,169 copying gimmemotifs/tools/dinamo.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,171 copying gimmemotifs/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,173 copying gimmemotifs/tools/yamda.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,174 copying gimmemotifs/tools/bioprospector.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,176 copying gimmemotifs/tools/mdmodule.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,178 copying gimmemotifs/tools/motifsampler.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,180 copying gimmemotifs/tools/gadem.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,182 copying gimmemotifs/tools/rpmcmc.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,184 copying gimmemotifs/tools/posmo.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,186 copying gimmemotifs/tools/hms.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,188 copying gimmemotifs/tools/trawler.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,189 copying gimmemotifs/tools/motifprogram.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,191 copying gimmemotifs/tools/improbizer.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,193 copying gimmemotifs/tools/prosampler.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,195 copying gimmemotifs/tools/homer.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,197 copying gimmemotifs/tools/xxmotif.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,199 copying gimmemotifs/tools/jaspar.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,201 copying gimmemotifs/tools/weeder.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,203 copying gimmemotifs/tools/amd.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/tools 2023-09-21T14:02:59,205 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-21T14:02:59,206 copying gimmemotifs/motif/base.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-21T14:02:59,209 copying gimmemotifs/motif/validation.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-21T14:02:59,211 copying gimmemotifs/motif/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-21T14:02:59,213 copying gimmemotifs/motif/_scanning.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-21T14:02:59,216 copying gimmemotifs/motif/cluster.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-21T14:02:59,218 copying gimmemotifs/motif/_comparison.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-21T14:02:59,221 copying gimmemotifs/motif/_plotting.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-21T14:02:59,223 copying gimmemotifs/motif/prediction.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-21T14:02:59,225 copying gimmemotifs/motif/read.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-21T14:02:59,228 copying gimmemotifs/motif/denovo.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/motif 2023-09-21T14:02:59,231 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:02:59,232 copying gimmemotifs/commands/motifs.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:02:59,235 copying gimmemotifs/commands/maelstrom.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:02:59,236 copying gimmemotifs/commands/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:02:59,238 copying gimmemotifs/commands/match.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:02:59,240 copying gimmemotifs/commands/cluster.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:02:59,242 copying gimmemotifs/commands/motif2factors.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:02:59,244 copying gimmemotifs/commands/threshold.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:02:59,246 copying gimmemotifs/commands/logo.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:02:59,248 copying gimmemotifs/commands/prediction.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:02:59,250 copying gimmemotifs/commands/pfmscan.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:02:59,252 copying gimmemotifs/commands/background.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:02:59,253 copying gimmemotifs/commands/location.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:02:59,255 copying gimmemotifs/commands/diff.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/commands 2023-09-21T14:02:59,258 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/db 2023-09-21T14:02:59,258 copying gimmemotifs/db/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/db 2023-09-21T14:02:59,262 creating build/lib.linux-armv7l-cpython-311/gimmemotifs/scanner 2023-09-21T14:02:59,263 copying gimmemotifs/scanner/base.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/scanner 2023-09-21T14:02:59,265 copying gimmemotifs/scanner/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/scanner 2023-09-21T14:02:59,268 copying gimmemotifs/scanner/utils.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/scanner 2023-09-21T14:02:59,270 copying gimmemotifs/included_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools 2023-09-21T14:02:59,271 running egg_info 2023-09-21T14:02:59,327 writing gimmemotifs.egg-info/PKG-INFO 2023-09-21T14:02:59,332 writing dependency_links to gimmemotifs.egg-info/dependency_links.txt 2023-09-21T14:02:59,334 writing requirements to gimmemotifs.egg-info/requires.txt 2023-09-21T14:02:59,336 writing top-level names to gimmemotifs.egg-info/top_level.txt 2023-09-21T14:02:59,367 reading manifest file 'gimmemotifs.egg-info/SOURCES.txt' 2023-09-21T14:02:59,386 reading manifest template 'MANIFEST.in' 2023-09-21T14:02:59,388 no previously-included directories found matching 'test/' 2023-09-21T14:02:59,397 warning: no previously-included files found matching 'scripts/download_motif_databases.py' 2023-09-21T14:02:59,398 warning: no previously-included files found matching 'scripts/gimme_benchmark' 2023-09-21T14:02:59,398 adding license file 'COPYING' 2023-09-21T14:02:59,408 writing manifest file 'gimmemotifs.egg-info/SOURCES.txt' 2023-09-21T14:02:59,410 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.__pycache__' is absent from the `packages` configuration. 2023-09-21T14:02:59,411 !! 2023-09-21T14:02:59,412 ******************************************************************************** 2023-09-21T14:02:59,413 ############################ 2023-09-21T14:02:59,413 # Package would be ignored # 2023-09-21T14:02:59,414 ############################ 2023-09-21T14:02:59,414 Python recognizes 'data.__pycache__' as an importable package[^1], 2023-09-21T14:02:59,414 but it is absent from setuptools' `packages` configuration. 2023-09-21T14:02:59,415 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-21T14:02:59,416 package, please make sure that 'data.__pycache__' is explicitly added 2023-09-21T14:02:59,417 to the `packages` configuration field. 2023-09-21T14:02:59,418 Alternatively, you can also rely on setuptools' discovery methods 2023-09-21T14:02:59,418 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-21T14:02:59,419 instead of `find_packages(...)`/`find:`). 2023-09-21T14:02:59,420 You can read more about "package discovery" on setuptools documentation page: 2023-09-21T14:02:59,421 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-21T14:02:59,422 If you don't want 'data.__pycache__' to be distributed and are 2023-09-21T14:02:59,422 already explicitly excluding 'data.__pycache__' via 2023-09-21T14:02:59,423 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-21T14:02:59,423 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-21T14:02:59,424 combination with a more fine grained `package-data` configuration. 2023-09-21T14:02:59,424 You can read more about "package data files" on setuptools documentation page: 2023-09-21T14:02:59,425 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-21T14:02:59,427 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-21T14:02:59,427 even if it does not contain any `.py` files. 2023-09-21T14:02:59,428 On the other hand, currently there is no concept of package data 2023-09-21T14:02:59,428 directory, all directories are treated like packages. 2023-09-21T14:02:59,429 ******************************************************************************** 2023-09-21T14:02:59,430 !! 2023-09-21T14:02:59,430 check.warn(importable) 2023-09-21T14:02:59,431 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.bg' is absent from the `packages` configuration. 2023-09-21T14:02:59,431 !! 2023-09-21T14:02:59,432 ******************************************************************************** 2023-09-21T14:02:59,433 ############################ 2023-09-21T14:02:59,433 # Package would be ignored # 2023-09-21T14:02:59,434 ############################ 2023-09-21T14:02:59,434 Python recognizes 'data.bg' as an importable package[^1], 2023-09-21T14:02:59,435 but it is absent from setuptools' `packages` configuration. 2023-09-21T14:02:59,436 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-21T14:02:59,436 package, please make sure that 'data.bg' is explicitly added 2023-09-21T14:02:59,437 to the `packages` configuration field. 2023-09-21T14:02:59,438 Alternatively, you can also rely on setuptools' discovery methods 2023-09-21T14:02:59,438 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-21T14:02:59,439 instead of `find_packages(...)`/`find:`). 2023-09-21T14:02:59,440 You can read more about "package discovery" on setuptools documentation page: 2023-09-21T14:02:59,441 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-21T14:02:59,442 If you don't want 'data.bg' to be distributed and are 2023-09-21T14:02:59,442 already explicitly excluding 'data.bg' via 2023-09-21T14:02:59,443 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-21T14:02:59,443 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-21T14:02:59,444 combination with a more fine grained `package-data` configuration. 2023-09-21T14:02:59,445 You can read more about "package data files" on setuptools documentation page: 2023-09-21T14:02:59,446 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-21T14:02:59,447 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-21T14:02:59,448 even if it does not contain any `.py` files. 2023-09-21T14:02:59,448 On the other hand, currently there is no concept of package data 2023-09-21T14:02:59,449 directory, all directories are treated like packages. 2023-09-21T14:02:59,449 ******************************************************************************** 2023-09-21T14:02:59,450 !! 2023-09-21T14:02:59,451 check.warn(importable) 2023-09-21T14:02:59,451 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.cfg' is absent from the `packages` configuration. 2023-09-21T14:02:59,452 !! 2023-09-21T14:02:59,452 ******************************************************************************** 2023-09-21T14:02:59,453 ############################ 2023-09-21T14:02:59,453 # Package would be ignored # 2023-09-21T14:02:59,454 ############################ 2023-09-21T14:02:59,454 Python recognizes 'data.cfg' as an importable package[^1], 2023-09-21T14:02:59,454 but it is absent from setuptools' `packages` configuration. 2023-09-21T14:02:59,455 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-21T14:02:59,456 package, please make sure that 'data.cfg' is explicitly added 2023-09-21T14:02:59,456 to the `packages` configuration field. 2023-09-21T14:02:59,457 Alternatively, you can also rely on setuptools' discovery methods 2023-09-21T14:02:59,458 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-21T14:02:59,458 instead of `find_packages(...)`/`find:`). 2023-09-21T14:02:59,459 You can read more about "package discovery" on setuptools documentation page: 2023-09-21T14:02:59,460 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-21T14:02:59,461 If you don't want 'data.cfg' to be distributed and are 2023-09-21T14:02:59,461 already explicitly excluding 'data.cfg' via 2023-09-21T14:02:59,462 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-21T14:02:59,462 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-21T14:02:59,463 combination with a more fine grained `package-data` configuration. 2023-09-21T14:02:59,464 You can read more about "package data files" on setuptools documentation page: 2023-09-21T14:02:59,465 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-21T14:02:59,466 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-21T14:02:59,467 even if it does not contain any `.py` files. 2023-09-21T14:02:59,467 On the other hand, currently there is no concept of package data 2023-09-21T14:02:59,468 directory, all directories are treated like packages. 2023-09-21T14:02:59,468 ******************************************************************************** 2023-09-21T14:02:59,469 !! 2023-09-21T14:02:59,470 check.warn(importable) 2023-09-21T14:02:59,470 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.examples' is absent from the `packages` configuration. 2023-09-21T14:02:59,471 !! 2023-09-21T14:02:59,473 ******************************************************************************** 2023-09-21T14:02:59,474 ############################ 2023-09-21T14:02:59,474 # Package would be ignored # 2023-09-21T14:02:59,475 ############################ 2023-09-21T14:02:59,475 Python recognizes 'data.examples' as an importable package[^1], 2023-09-21T14:02:59,476 but it is absent from setuptools' `packages` configuration. 2023-09-21T14:02:59,477 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-21T14:02:59,477 package, please make sure that 'data.examples' is explicitly added 2023-09-21T14:02:59,478 to the `packages` configuration field. 2023-09-21T14:02:59,479 Alternatively, you can also rely on setuptools' discovery methods 2023-09-21T14:02:59,479 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-21T14:02:59,480 instead of `find_packages(...)`/`find:`). 2023-09-21T14:02:59,481 You can read more about "package discovery" on setuptools documentation page: 2023-09-21T14:02:59,482 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-21T14:02:59,483 If you don't want 'data.examples' to be distributed and are 2023-09-21T14:02:59,483 already explicitly excluding 'data.examples' via 2023-09-21T14:02:59,484 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-21T14:02:59,484 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-21T14:02:59,485 combination with a more fine grained `package-data` configuration. 2023-09-21T14:02:59,485 You can read more about "package data files" on setuptools documentation page: 2023-09-21T14:02:59,486 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-21T14:02:59,488 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-21T14:02:59,488 even if it does not contain any `.py` files. 2023-09-21T14:02:59,492 On the other hand, currently there is no concept of package data 2023-09-21T14:02:59,497 directory, all directories are treated like packages. 2023-09-21T14:02:59,502 ******************************************************************************** 2023-09-21T14:02:59,503 !! 2023-09-21T14:02:59,504 check.warn(importable) 2023-09-21T14:02:59,504 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.motif_databases' is absent from the `packages` configuration. 2023-09-21T14:02:59,505 !! 2023-09-21T14:02:59,506 ******************************************************************************** 2023-09-21T14:02:59,506 ############################ 2023-09-21T14:02:59,509 # Package would be ignored # 2023-09-21T14:02:59,509 ############################ 2023-09-21T14:02:59,510 Python recognizes 'data.motif_databases' as an importable package[^1], 2023-09-21T14:02:59,510 but it is absent from setuptools' `packages` configuration. 2023-09-21T14:02:59,512 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-21T14:02:59,512 package, please make sure that 'data.motif_databases' is explicitly added 2023-09-21T14:02:59,513 to the `packages` configuration field. 2023-09-21T14:02:59,513 Alternatively, you can also rely on setuptools' discovery methods 2023-09-21T14:02:59,514 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-21T14:02:59,515 instead of `find_packages(...)`/`find:`). 2023-09-21T14:02:59,516 You can read more about "package discovery" on setuptools documentation page: 2023-09-21T14:02:59,517 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-21T14:02:59,518 If you don't want 'data.motif_databases' to be distributed and are 2023-09-21T14:02:59,519 already explicitly excluding 'data.motif_databases' via 2023-09-21T14:02:59,523 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-21T14:02:59,529 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-21T14:02:59,530 combination with a more fine grained `package-data` configuration. 2023-09-21T14:02:59,537 You can read more about "package data files" on setuptools documentation page: 2023-09-21T14:02:59,538 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-21T14:02:59,540 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-21T14:02:59,541 even if it does not contain any `.py` files. 2023-09-21T14:02:59,542 On the other hand, currently there is no concept of package data 2023-09-21T14:02:59,542 directory, all directories are treated like packages. 2023-09-21T14:02:59,543 ******************************************************************************** 2023-09-21T14:02:59,545 !! 2023-09-21T14:02:59,545 check.warn(importable) 2023-09-21T14:02:59,546 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.score_dists' is absent from the `packages` configuration. 2023-09-21T14:02:59,546 !! 2023-09-21T14:02:59,547 ******************************************************************************** 2023-09-21T14:02:59,548 ############################ 2023-09-21T14:02:59,549 # Package would be ignored # 2023-09-21T14:02:59,550 ############################ 2023-09-21T14:02:59,551 Python recognizes 'data.score_dists' as an importable package[^1], 2023-09-21T14:02:59,551 but it is absent from setuptools' `packages` configuration. 2023-09-21T14:02:59,552 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-21T14:02:59,553 package, please make sure that 'data.score_dists' is explicitly added 2023-09-21T14:02:59,553 to the `packages` configuration field. 2023-09-21T14:02:59,554 Alternatively, you can also rely on setuptools' discovery methods 2023-09-21T14:02:59,555 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-21T14:02:59,555 instead of `find_packages(...)`/`find:`). 2023-09-21T14:02:59,557 You can read more about "package discovery" on setuptools documentation page: 2023-09-21T14:02:59,558 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-21T14:02:59,559 If you don't want 'data.score_dists' to be distributed and are 2023-09-21T14:02:59,559 already explicitly excluding 'data.score_dists' via 2023-09-21T14:02:59,560 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-21T14:02:59,560 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-21T14:02:59,561 combination with a more fine grained `package-data` configuration. 2023-09-21T14:02:59,562 You can read more about "package data files" on setuptools documentation page: 2023-09-21T14:02:59,563 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-21T14:02:59,565 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-21T14:02:59,565 even if it does not contain any `.py` files. 2023-09-21T14:02:59,566 On the other hand, currently there is no concept of package data 2023-09-21T14:02:59,578 directory, all directories are treated like packages. 2023-09-21T14:02:59,586 ******************************************************************************** 2023-09-21T14:02:59,602 !! 2023-09-21T14:02:59,603 check.warn(importable) 2023-09-21T14:02:59,604 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.templates' is absent from the `packages` configuration. 2023-09-21T14:02:59,604 !! 2023-09-21T14:02:59,605 ******************************************************************************** 2023-09-21T14:02:59,606 ############################ 2023-09-21T14:02:59,607 # Package would be ignored # 2023-09-21T14:02:59,608 ############################ 2023-09-21T14:02:59,608 Python recognizes 'data.templates' as an importable package[^1], 2023-09-21T14:02:59,609 but it is absent from setuptools' `packages` configuration. 2023-09-21T14:02:59,610 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-21T14:02:59,610 package, please make sure that 'data.templates' is explicitly added 2023-09-21T14:02:59,611 to the `packages` configuration field. 2023-09-21T14:02:59,612 Alternatively, you can also rely on setuptools' discovery methods 2023-09-21T14:02:59,613 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-21T14:02:59,614 instead of `find_packages(...)`/`find:`). 2023-09-21T14:02:59,615 You can read more about "package discovery" on setuptools documentation page: 2023-09-21T14:02:59,620 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-21T14:02:59,626 If you don't want 'data.templates' to be distributed and are 2023-09-21T14:02:59,627 already explicitly excluding 'data.templates' via 2023-09-21T14:02:59,628 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-21T14:02:59,628 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-21T14:02:59,629 combination with a more fine grained `package-data` configuration. 2023-09-21T14:02:59,630 You can read more about "package data files" on setuptools documentation page: 2023-09-21T14:02:59,631 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-21T14:02:59,633 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-21T14:02:59,633 even if it does not contain any `.py` files. 2023-09-21T14:02:59,634 On the other hand, currently there is no concept of package data 2023-09-21T14:02:59,634 directory, all directories are treated like packages. 2023-09-21T14:02:59,635 ******************************************************************************** 2023-09-21T14:02:59,636 !! 2023-09-21T14:02:59,639 check.warn(importable) 2023-09-21T14:02:59,641 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'data.templates.sortable' is absent from the `packages` configuration. 2023-09-21T14:02:59,641 !! 2023-09-21T14:02:59,643 ******************************************************************************** 2023-09-21T14:02:59,643 ############################ 2023-09-21T14:02:59,644 # Package would be ignored # 2023-09-21T14:02:59,644 ############################ 2023-09-21T14:02:59,645 Python recognizes 'data.templates.sortable' as an importable package[^1], 2023-09-21T14:02:59,645 but it is absent from setuptools' `packages` configuration. 2023-09-21T14:02:59,646 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-21T14:02:59,647 package, please make sure that 'data.templates.sortable' is explicitly added 2023-09-21T14:02:59,647 to the `packages` configuration field. 2023-09-21T14:02:59,649 Alternatively, you can also rely on setuptools' discovery methods 2023-09-21T14:02:59,650 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-21T14:02:59,652 instead of `find_packages(...)`/`find:`). 2023-09-21T14:02:59,653 You can read more about "package discovery" on setuptools documentation page: 2023-09-21T14:02:59,654 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-21T14:02:59,655 If you don't want 'data.templates.sortable' to be distributed and are 2023-09-21T14:02:59,656 already explicitly excluding 'data.templates.sortable' via 2023-09-21T14:02:59,656 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-21T14:02:59,657 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-21T14:02:59,658 combination with a more fine grained `package-data` configuration. 2023-09-21T14:02:59,659 You can read more about "package data files" on setuptools documentation page: 2023-09-21T14:02:59,660 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-21T14:02:59,662 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-21T14:02:59,662 even if it does not contain any `.py` files. 2023-09-21T14:02:59,664 On the other hand, currently there is no concept of package data 2023-09-21T14:02:59,665 directory, all directories are treated like packages. 2023-09-21T14:02:59,666 ******************************************************************************** 2023-09-21T14:02:59,667 !! 2023-09-21T14:02:59,669 check.warn(importable) 2023-09-21T14:02:59,671 copying gimmemotifs/c_metrics.c -> build/lib.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:02:59,672 creating build/lib.linux-armv7l-cpython-311/data/__pycache__ 2023-09-21T14:02:59,672 copying data/__pycache__/__init__.cpython-310.pyc -> build/lib.linux-armv7l-cpython-311/data/__pycache__ 2023-09-21T14:02:59,673 creating build/lib.linux-armv7l-cpython-311/data/bg 2023-09-21T14:02:59,673 copying data/bg/hg18.MotifSampler.bg -> build/lib.linux-armv7l-cpython-311/data/bg 2023-09-21T14:02:59,674 copying data/bg/hg19.MotifSampler.bg -> build/lib.linux-armv7l-cpython-311/data/bg 2023-09-21T14:02:59,674 copying data/bg/hg38.MotifSampler.bg -> build/lib.linux-armv7l-cpython-311/data/bg 2023-09-21T14:02:59,675 copying data/bg/mm10.MotifSampler.bg -> build/lib.linux-armv7l-cpython-311/data/bg 2023-09-21T14:02:59,675 copying data/bg/mm9.MotifSampler.bg -> build/lib.linux-armv7l-cpython-311/data/bg 2023-09-21T14:02:59,676 copying data/bg/xenTro2.MotifSampler.bg -> build/lib.linux-armv7l-cpython-311/data/bg 2023-09-21T14:02:59,676 creating build/lib.linux-armv7l-cpython-311/data/cfg 2023-09-21T14:02:59,677 copying data/cfg/gimmemotifs.default.cfg -> build/lib.linux-armv7l-cpython-311/data/cfg 2023-09-21T14:02:59,677 creating build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:02:59,678 copying data/examples/Gm12878.CTCF.top500.w200.bed -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:02:59,678 copying data/examples/Gm12878.CTCF.top500.w200.fa -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:02:59,679 copying data/examples/MA0099.3.jaspar -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:02:59,682 copying data/examples/NRF1.bed -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:02:59,683 copying data/examples/TAp73alpha.bed -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:02:59,683 copying data/examples/TAp73alpha.fa -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:02:59,684 copying data/examples/example.pfm -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:02:59,684 copying data/examples/hg19.blood.most_variable.10k.txt -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:02:59,684 copying data/examples/hg19.blood.most_variable.1k.txt -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:02:59,685 copying data/examples/test.small.fa -> build/lib.linux-armv7l-cpython-311/data/examples 2023-09-21T14:02:59,685 creating build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,686 copying data/motif_databases/CIS-BP.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,687 copying data/motif_databases/CIS-BP.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,687 copying data/motif_databases/ENCODE.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,688 copying data/motif_databases/ENCODE.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,688 copying data/motif_databases/HOCOMOCOv10_HUMAN.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,689 copying data/motif_databases/HOCOMOCOv10_HUMAN.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,689 copying data/motif_databases/HOCOMOCOv10_MOUSE.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,690 copying data/motif_databases/HOCOMOCOv10_MOUSE.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,691 copying data/motif_databases/HOCOMOCOv11_HUMAN.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,692 copying data/motif_databases/HOCOMOCOv11_HUMAN.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,693 copying data/motif_databases/HOCOMOCOv11_MOUSE.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,693 copying data/motif_databases/HOCOMOCOv11_MOUSE.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,694 copying data/motif_databases/HOMER.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,694 copying data/motif_databases/HOMER.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,694 copying data/motif_databases/IMAGE.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,698 copying data/motif_databases/IMAGE.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,711 copying data/motif_databases/JASPAR2018.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,714 copying data/motif_databases/JASPAR2018.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,724 copying data/motif_databases/JASPAR2018_fungi.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,726 copying data/motif_databases/JASPAR2018_fungi.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,729 copying data/motif_databases/JASPAR2018_insects.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,732 copying data/motif_databases/JASPAR2018_insects.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,735 copying data/motif_databases/JASPAR2018_nematodes.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,737 copying data/motif_databases/JASPAR2018_nematodes.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,739 copying data/motif_databases/JASPAR2018_plants.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,742 copying data/motif_databases/JASPAR2018_plants.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,747 copying data/motif_databases/JASPAR2018_urochordates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,749 copying data/motif_databases/JASPAR2018_urochordates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,751 copying data/motif_databases/JASPAR2018_vertebrates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,754 copying data/motif_databases/JASPAR2018_vertebrates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,759 copying data/motif_databases/JASPAR2020.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,763 copying data/motif_databases/JASPAR2020.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,776 copying data/motif_databases/JASPAR2020_fungi.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,779 copying data/motif_databases/JASPAR2020_fungi.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,783 copying data/motif_databases/JASPAR2020_insects.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,785 copying data/motif_databases/JASPAR2020_insects.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,788 copying data/motif_databases/JASPAR2020_nematodes.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,790 copying data/motif_databases/JASPAR2020_nematodes.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,792 copying data/motif_databases/JASPAR2020_plants.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,795 copying data/motif_databases/JASPAR2020_plants.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,803 copying data/motif_databases/JASPAR2020_urochordates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,805 copying data/motif_databases/JASPAR2020_urochordates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,806 copying data/motif_databases/JASPAR2020_vertebrates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,809 copying data/motif_databases/JASPAR2020_vertebrates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,818 copying data/motif_databases/JASPAR2022.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,823 copying data/motif_databases/JASPAR2022.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,837 copying data/motif_databases/JASPAR2022_fungi.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,839 copying data/motif_databases/JASPAR2022_fungi.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,842 copying data/motif_databases/JASPAR2022_insects.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,845 copying data/motif_databases/JASPAR2022_insects.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,848 copying data/motif_databases/JASPAR2022_nematodes.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,850 copying data/motif_databases/JASPAR2022_nematodes.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,852 copying data/motif_databases/JASPAR2022_plants.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,855 copying data/motif_databases/JASPAR2022_plants.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,860 copying data/motif_databases/JASPAR2022_urochordates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,863 copying data/motif_databases/JASPAR2022_urochordates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,866 copying data/motif_databases/JASPAR2022_vertebrates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,869 copying data/motif_databases/JASPAR2022_vertebrates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,876 copying data/motif_databases/RSAT_insects.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,878 copying data/motif_databases/RSAT_insects.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,882 copying data/motif_databases/RSAT_plants.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,884 copying data/motif_databases/RSAT_plants.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,891 copying data/motif_databases/RSAT_vertebrates.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,893 copying data/motif_databases/RSAT_vertebrates.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,908 copying data/motif_databases/SwissRegulon.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,910 copying data/motif_databases/SwissRegulon.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,917 copying data/motif_databases/factorbook.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,919 copying data/motif_databases/factorbook.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,925 copying data/motif_databases/gimme.invertebrate.v1.0.pwm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,933 copying data/motif_databases/gimme.plant.v1.0.pwm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,937 copying data/motif_databases/gimme.vertebrate.v3.1.factor2motifs.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,941 copying data/motif_databases/gimme.vertebrate.v3.1.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,944 copying data/motif_databases/gimme.vertebrate.v3.1.pwm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,958 copying data/motif_databases/gimme.vertebrate.v5.0.motif2factors.txt -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,968 copying data/motif_databases/gimme.vertebrate.v5.0.pfm -> build/lib.linux-armv7l-cpython-311/data/motif_databases 2023-09-21T14:02:59,986 creating build/lib.linux-armv7l-cpython-311/data/score_dists 2023-09-21T14:02:59,987 copying data/score_dists/dic2_bg_mean_sd.txt -> build/lib.linux-armv7l-cpython-311/data/score_dists 2023-09-21T14:02:59,990 copying data/score_dists/dic2_mean_sd.txt -> build/lib.linux-armv7l-cpython-311/data/score_dists 2023-09-21T14:02:59,992 copying data/score_dists/total_wic_mean_score_dist.txt -> build/lib.linux-armv7l-cpython-311/data/score_dists 2023-09-21T14:02:59,995 creating build/lib.linux-armv7l-cpython-311/data/templates 2023-09-21T14:02:59,996 copying data/templates/cluster_template.jinja.html -> build/lib.linux-armv7l-cpython-311/data/templates 2023-09-21T14:02:59,999 copying data/templates/report_template.jinja.html -> build/lib.linux-armv7l-cpython-311/data/templates 2023-09-21T14:03:00,001 copying data/templates/star.png -> build/lib.linux-armv7l-cpython-311/data/templates 2023-09-21T14:03:00,004 copying data/templates/star_silver.png -> build/lib.linux-armv7l-cpython-311/data/templates 2023-09-21T14:03:00,007 copying data/templates/table.tpl -> build/lib.linux-armv7l-cpython-311/data/templates 2023-09-21T14:03:00,009 creating build/lib.linux-armv7l-cpython-311/data/templates/sortable 2023-09-21T14:03:00,011 copying data/templates/sortable/sortable-theme-slick.css -> build/lib.linux-armv7l-cpython-311/data/templates/sortable 2023-09-21T14:03:00,013 copying data/templates/sortable/sortable.min.js -> build/lib.linux-armv7l-cpython-311/data/templates/sortable 2023-09-21T14:03:00,020 UPDATING build/lib.linux-armv7l-cpython-311/gimmemotifs/_version.py 2023-09-21T14:03:00,022 set build/lib.linux-armv7l-cpython-311/gimmemotifs/_version.py to '0.18.0' 2023-09-21T14:03:00,022 running build_ext 2023-09-21T14:03:00,534 building 'gimmemotifs.c_metrics' extension 2023-09-21T14:03:00,535 creating build/temp.linux-armv7l-cpython-311 2023-09-21T14:03:00,536 creating build/temp.linux-armv7l-cpython-311/gimmemotifs 2023-09-21T14:03:00,537 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c gimmemotifs/c_metrics.c -o build/temp.linux-armv7l-cpython-311/gimmemotifs/c_metrics.o 2023-09-21T14:03:00,896 gimmemotifs/c_metrics.c: In function ‘get_truncate_len’: 2023-09-21T14:03:00,897 gimmemotifs/c_metrics.c:315:5: warning: type of ‘len1’ defaults to ‘int’ [-Wimplicit-int] 2023-09-21T14:03:00,897 315 | int get_truncate_len(len1, len2, pos) { 2023-09-21T14:03:00,898 | ^~~~~~~~~~~~~~~~ 2023-09-21T14:03:00,899 gimmemotifs/c_metrics.c:315:5: warning: type of ‘len2’ defaults to ‘int’ [-Wimplicit-int] 2023-09-21T14:03:00,900 gimmemotifs/c_metrics.c:315:5: warning: type of ‘pos’ defaults to ‘int’ [-Wimplicit-int] 2023-09-21T14:03:00,904 gimmemotifs/c_metrics.c: In function ‘c_metrics_pwmscan’: 2023-09-21T14:03:00,905 gimmemotifs/c_metrics.c:564:16: warning: unused variable ‘pwm_min’ [-Wunused-variable] 2023-09-21T14:03:00,906 564 | double pwm_min = -50; 2023-09-21T14:03:00,906 | ^~~~~~~ 2023-09-21T14:03:00,907 gimmemotifs/c_metrics.c:563:13: warning: unused variable ‘c’ [-Wunused-variable] 2023-09-21T14:03:00,907 563 | int c; 2023-09-21T14:03:00,908 | ^ 2023-09-21T14:03:00,910 gimmemotifs/c_metrics.c: At top level: 2023-09-21T14:03:00,911 gimmemotifs/c_metrics.c:901:22: warning: initialization of ‘int’ from ‘void *’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-21T14:03:00,911 901 | {NULL, NULL, NULL, 0, NULL} 2023-09-21T14:03:00,912 | ^~~~ 2023-09-21T14:03:00,912 gimmemotifs/c_metrics.c:901:22: note: (near initialization for ‘CoreMethods[4].ml_flags’) 2023-09-21T14:03:00,913 gimmemotifs/c_metrics.c:901:31: warning: excess elements in struct initializer 2023-09-21T14:03:00,914 901 | {NULL, NULL, NULL, 0, NULL} 2023-09-21T14:03:00,916 | ^~~~ 2023-09-21T14:03:00,916 gimmemotifs/c_metrics.c:901:31: note: (near initialization for ‘CoreMethods[4]’) 2023-09-21T14:03:02,257 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/gimmemotifs/c_metrics.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/gimmemotifs/c_metrics.cpython-311-arm-linux-gnueabihf.so 2023-09-21T14:03:02,348 running build_scripts 2023-09-21T14:03:02,349 creating build/scripts-3.11 2023-09-21T14:03:02,350 copying and adjusting scripts/gimme -> build/scripts-3.11 2023-09-21T14:03:02,352 copying and adjusting scripts/combine_peaks -> build/scripts-3.11 2023-09-21T14:03:02,353 copying and adjusting scripts/coverage_table -> build/scripts-3.11 2023-09-21T14:03:02,354 changing mode of build/scripts-3.11/gimme from 644 to 755 2023-09-21T14:03:02,355 changing mode of build/scripts-3.11/combine_peaks from 644 to 755 2023-09-21T14:03:02,355 changing mode of build/scripts-3.11/coverage_table from 644 to 755 2023-09-21T14:03:02,379 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-21T14:03:02,380 !! 2023-09-21T14:03:02,381 ******************************************************************************** 2023-09-21T14:03:02,382 Please avoid running ``setup.py`` directly. 2023-09-21T14:03:02,382 Instead, use pypa/build, pypa/installer or other 2023-09-21T14:03:02,383 standards-based tools. 2023-09-21T14:03:02,384 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-21T14:03:02,384 ******************************************************************************** 2023-09-21T14:03:02,386 !! 2023-09-21T14:03:02,386 self.initialize_options() 2023-09-21T14:03:02,405 installing to build/bdist.linux-armv7l/wheel 2023-09-21T14:03:02,406 running install 2023-09-21T14:03:02,429 running install_lib 2023-09-21T14:03:02,454 creating build/bdist.linux-armv7l 2023-09-21T14:03:02,454 creating build/bdist.linux-armv7l/wheel 2023-09-21T14:03:02,456 creating build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:03:02,457 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/stats.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:03:02,460 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/preprocessing.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:03:02,462 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:03:02,464 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/report.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:03:02,467 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/c_metrics.c -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:03:02,469 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/_version.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:03:02,471 creating build/bdist.linux-armv7l/wheel/gimmemotifs/maelstrom 2023-09-21T14:03:02,472 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/maelstrom/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/maelstrom 2023-09-21T14:03:02,475 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/maelstrom/moap.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/maelstrom 2023-09-21T14:03:02,477 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/maelstrom/rank.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/maelstrom 2023-09-21T14:03:02,479 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/utils.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:03:02,482 creating build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,483 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/meme.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,485 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/chipmunk.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,487 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/memew.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,489 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/dreme.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,490 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/dinamo.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,492 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,494 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/yamda.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,496 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/bioprospector.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,497 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/mdmodule.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,499 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/motifsampler.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,501 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/gadem.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,503 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/rpmcmc.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,505 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/posmo.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,507 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/hms.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,509 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/trawler.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,510 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/motifprogram.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,512 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/improbizer.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,514 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/prosampler.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,516 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/homer.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,518 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/xxmotif.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,520 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/jaspar.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,522 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/weeder.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,523 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/tools/amd.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/tools 2023-09-21T14:03:02,525 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/c_metrics.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:03:02,529 creating build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-21T14:03:02,530 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/motif/base.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-21T14:03:02,532 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/motif/validation.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-21T14:03:02,534 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/motif/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-21T14:03:02,536 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/motif/_scanning.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-21T14:03:02,538 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/motif/cluster.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-21T14:03:02,540 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/motif/_comparison.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-21T14:03:02,542 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/motif/_plotting.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-21T14:03:02,544 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/motif/prediction.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-21T14:03:02,547 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/motif/read.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-21T14:03:02,549 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/motif/denovo.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/motif 2023-09-21T14:03:02,552 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/rocmetrics.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:03:02,555 creating build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:03:02,555 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/motifs.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:03:02,558 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/maelstrom.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:03:02,560 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:03:02,562 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/match.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:03:02,564 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/cluster.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:03:02,565 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/motif2factors.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:03:02,567 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/threshold.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:03:02,569 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/logo.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:03:02,570 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/prediction.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:03:02,572 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/pfmscan.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:03:02,574 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/background.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:03:02,576 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/location.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:03:02,577 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/commands/diff.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/commands 2023-09-21T14:03:02,579 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/plot.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:03:02,581 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/comparison.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:03:02,584 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/cli.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:03:02,587 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/orthologs.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:03:02,589 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/fasta.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:03:02,592 creating build/bdist.linux-armv7l/wheel/gimmemotifs/db 2023-09-21T14:03:02,593 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/db/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/db 2023-09-21T14:03:02,595 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/config.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:03:02,598 creating build/bdist.linux-armv7l/wheel/gimmemotifs/scanner 2023-09-21T14:03:02,599 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/scanner/base.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/scanner 2023-09-21T14:03:02,602 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/scanner/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/scanner 2023-09-21T14:03:02,604 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/scanner/utils.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/scanner 2023-09-21T14:03:02,606 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/background.py -> build/bdist.linux-armv7l/wheel/gimmemotifs 2023-09-21T14:03:02,609 creating build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:03:02,610 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/__init__.py -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:03:02,611 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/CreateBackgroundModel -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:03:02,643 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ameme -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:03:02,652 creating build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/HMS 2023-09-21T14:03:02,653 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS/theta0.txt -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/HMS 2023-09-21T14:03:02,655 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS/theta1.txt -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/HMS 2023-09-21T14:03:02,657 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS/theta2.txt -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/HMS 2023-09-21T14:03:02,658 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS/theta3.txt -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/HMS 2023-09-21T14:03:02,660 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/HMS/hms -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/HMS 2023-09-21T14:03:02,664 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/clusterwd -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:03:02,666 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/AMD.bin -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:03:02,670 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/MDmodule -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:03:02,673 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/posmo -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:03:02,676 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/MotifSampler -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:03:02,702 creating build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/ChIPMunk 2023-09-21T14:03:02,703 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ChIPMunk/ChIPMunk.sh -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/ChIPMunk 2023-09-21T14:03:02,705 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/ChIPMunk/chipmunk.jar -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools/ChIPMunk 2023-09-21T14:03:02,777 copying build/lib.linux-armv7l-cpython-311/gimmemotifs/included_tools/BioProspector -> build/bdist.linux-armv7l/wheel/gimmemotifs/included_tools 2023-09-21T14:03:02,781 creating build/bdist.linux-armv7l/wheel/data 2023-09-21T14:03:02,782 creating build/bdist.linux-armv7l/wheel/data/templates 2023-09-21T14:03:02,783 copying build/lib.linux-armv7l-cpython-311/data/templates/table.tpl -> build/bdist.linux-armv7l/wheel/data/templates 2023-09-21T14:03:02,786 copying build/lib.linux-armv7l-cpython-311/data/templates/report_template.jinja.html -> build/bdist.linux-armv7l/wheel/data/templates 2023-09-21T14:03:02,788 copying build/lib.linux-armv7l-cpython-311/data/templates/star_silver.png -> build/bdist.linux-armv7l/wheel/data/templates 2023-09-21T14:03:02,791 creating build/bdist.linux-armv7l/wheel/data/templates/sortable 2023-09-21T14:03:02,792 copying build/lib.linux-armv7l-cpython-311/data/templates/sortable/sortable.min.js -> build/bdist.linux-armv7l/wheel/data/templates/sortable 2023-09-21T14:03:02,794 copying build/lib.linux-armv7l-cpython-311/data/templates/sortable/sortable-theme-slick.css -> build/bdist.linux-armv7l/wheel/data/templates/sortable 2023-09-21T14:03:02,796 copying build/lib.linux-armv7l-cpython-311/data/templates/cluster_template.jinja.html -> build/bdist.linux-armv7l/wheel/data/templates 2023-09-21T14:03:02,799 copying build/lib.linux-armv7l-cpython-311/data/templates/star.png -> build/bdist.linux-armv7l/wheel/data/templates 2023-09-21T14:03:02,802 creating build/bdist.linux-armv7l/wheel/data/__pycache__ 2023-09-21T14:03:02,803 copying build/lib.linux-armv7l-cpython-311/data/__pycache__/__init__.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/data/__pycache__ 2023-09-21T14:03:02,805 copying build/lib.linux-armv7l-cpython-311/data/__init__.py -> build/bdist.linux-armv7l/wheel/data 2023-09-21T14:03:02,807 creating build/bdist.linux-armv7l/wheel/data/cfg 2023-09-21T14:03:02,808 copying build/lib.linux-armv7l-cpython-311/data/cfg/gimmemotifs.default.cfg -> build/bdist.linux-armv7l/wheel/data/cfg 2023-09-21T14:03:02,811 creating build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:03:02,812 copying build/lib.linux-armv7l-cpython-311/data/examples/Gm12878.CTCF.top500.w200.fa -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:03:02,816 copying build/lib.linux-armv7l-cpython-311/data/examples/NRF1.bed -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:03:02,820 copying build/lib.linux-armv7l-cpython-311/data/examples/hg19.blood.most_variable.10k.txt -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:03:02,844 copying build/lib.linux-armv7l-cpython-311/data/examples/Gm12878.CTCF.top500.w200.bed -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:03:02,847 copying build/lib.linux-armv7l-cpython-311/data/examples/example.pfm -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:03:02,849 copying build/lib.linux-armv7l-cpython-311/data/examples/hg19.blood.most_variable.1k.txt -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:03:02,854 copying build/lib.linux-armv7l-cpython-311/data/examples/TAp73alpha.fa -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:03:02,860 copying build/lib.linux-armv7l-cpython-311/data/examples/test.small.fa -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:03:02,862 copying build/lib.linux-armv7l-cpython-311/data/examples/MA0099.3.jaspar -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:03:02,864 copying build/lib.linux-armv7l-cpython-311/data/examples/TAp73alpha.bed -> build/bdist.linux-armv7l/wheel/data/examples 2023-09-21T14:03:02,868 creating build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,869 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_fungi.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,872 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_vertebrates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,880 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_vertebrates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,883 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/RSAT_plants.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,887 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_fungi.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,889 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,898 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv10_HUMAN.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,907 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/factorbook.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,910 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_plants.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,912 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,916 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_nematodes.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,918 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_vertebrates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,923 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/RSAT_vertebrates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,925 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_insects.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,927 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_plants.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,935 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv10_HUMAN.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,937 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOMER.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,941 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_vertebrates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,943 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,960 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/SwissRegulon.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,963 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_fungi.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,965 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_plants.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,973 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_plants.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,976 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv11_HUMAN.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,988 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/SwissRegulon.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,994 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_insects.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,996 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_fungi.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:02,999 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_insects.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,001 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_nematodes.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,004 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/factorbook.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,009 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_urochordates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,011 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_fungi.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,013 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,016 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.vertebrate.v3.1.pwm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,028 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv10_MOUSE.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,034 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_nematodes.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,037 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_insects.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,039 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_fungi.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,043 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.vertebrate.v5.0.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,057 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_urochordates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,059 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_vertebrates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,062 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,065 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_plants.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,071 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/RSAT_insects.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,073 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/IMAGE.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,087 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_insects.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,089 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_plants.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,091 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.vertebrate.v3.1.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,094 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/IMAGE.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,097 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/RSAT_plants.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,098 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/CIS-BP.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,171 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_nematodes.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,173 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv11_MOUSE.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,176 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.vertebrate.v5.0.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,186 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/RSAT_insects.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,193 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/RSAT_vertebrates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,218 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_vertebrates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,224 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/ENCODE.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,242 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2018_urochordates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,243 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_urochordates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,246 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv11_HUMAN.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,248 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/CIS-BP.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,262 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv10_MOUSE.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,265 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_urochordates.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,268 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_nematodes.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,270 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_insects.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,273 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2022_nematodes.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,276 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,290 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.invertebrate.v1.0.pwm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,296 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/JASPAR2020_urochordates.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,298 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOMER.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,302 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/HOCOMOCOv11_MOUSE.pfm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,309 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.plant.v1.0.pwm -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,313 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/gimme.vertebrate.v3.1.factor2motifs.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,316 copying build/lib.linux-armv7l-cpython-311/data/motif_databases/ENCODE.motif2factors.txt -> build/bdist.linux-armv7l/wheel/data/motif_databases 2023-09-21T14:03:03,321 creating build/bdist.linux-armv7l/wheel/data/score_dists 2023-09-21T14:03:03,322 copying build/lib.linux-armv7l-cpython-311/data/score_dists/dic2_mean_sd.txt -> build/bdist.linux-armv7l/wheel/data/score_dists 2023-09-21T14:03:03,324 copying build/lib.linux-armv7l-cpython-311/data/score_dists/dic2_bg_mean_sd.txt -> build/bdist.linux-armv7l/wheel/data/score_dists 2023-09-21T14:03:03,327 copying build/lib.linux-armv7l-cpython-311/data/score_dists/total_wic_mean_score_dist.txt -> build/bdist.linux-armv7l/wheel/data/score_dists 2023-09-21T14:03:03,329 creating build/bdist.linux-armv7l/wheel/data/bg 2023-09-21T14:03:03,330 copying build/lib.linux-armv7l-cpython-311/data/bg/hg18.MotifSampler.bg -> build/bdist.linux-armv7l/wheel/data/bg 2023-09-21T14:03:03,332 copying build/lib.linux-armv7l-cpython-311/data/bg/mm10.MotifSampler.bg -> build/bdist.linux-armv7l/wheel/data/bg 2023-09-21T14:03:03,334 copying build/lib.linux-armv7l-cpython-311/data/bg/xenTro2.MotifSampler.bg -> build/bdist.linux-armv7l/wheel/data/bg 2023-09-21T14:03:03,336 copying build/lib.linux-armv7l-cpython-311/data/bg/hg38.MotifSampler.bg -> build/bdist.linux-armv7l/wheel/data/bg 2023-09-21T14:03:03,337 copying build/lib.linux-armv7l-cpython-311/data/bg/mm9.MotifSampler.bg -> build/bdist.linux-armv7l/wheel/data/bg 2023-09-21T14:03:03,339 copying build/lib.linux-armv7l-cpython-311/data/bg/hg19.MotifSampler.bg -> build/bdist.linux-armv7l/wheel/data/bg 2023-09-21T14:03:03,341 running install_egg_info 2023-09-21T14:03:03,372 Copying gimmemotifs.egg-info to build/bdist.linux-armv7l/wheel/gimmemotifs-0.18.0-py3.11.egg-info 2023-09-21T14:03:03,383 running install_scripts 2023-09-21T14:03:03,384 creating build/bdist.linux-armv7l/wheel/gimmemotifs-0.18.0.data 2023-09-21T14:03:03,385 creating build/bdist.linux-armv7l/wheel/gimmemotifs-0.18.0.data/scripts 2023-09-21T14:03:03,386 copying build/scripts-3.11/gimme -> build/bdist.linux-armv7l/wheel/gimmemotifs-0.18.0.data/scripts 2023-09-21T14:03:03,388 copying build/scripts-3.11/coverage_table -> build/bdist.linux-armv7l/wheel/gimmemotifs-0.18.0.data/scripts 2023-09-21T14:03:03,389 copying build/scripts-3.11/combine_peaks -> build/bdist.linux-armv7l/wheel/gimmemotifs-0.18.0.data/scripts 2023-09-21T14:03:03,391 changing mode of build/bdist.linux-armv7l/wheel/gimmemotifs-0.18.0.data/scripts/gimme to 755 2023-09-21T14:03:03,392 changing mode of build/bdist.linux-armv7l/wheel/gimmemotifs-0.18.0.data/scripts/coverage_table to 755 2023-09-21T14:03:03,392 changing mode of build/bdist.linux-armv7l/wheel/gimmemotifs-0.18.0.data/scripts/combine_peaks to 755 2023-09-21T14:03:03,455 creating build/bdist.linux-armv7l/wheel/gimmemotifs-0.18.0.dist-info/WHEEL 2023-09-21T14:03:03,458 creating '/tmp/pip-wheel-pujip_xz/gimmemotifs-0.18.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-21T14:03:03,461 adding 'data/__init__.py' 2023-09-21T14:03:03,463 adding 'data/__pycache__/__init__.cpython-310.pyc' 2023-09-21T14:03:03,465 adding 'data/bg/hg18.MotifSampler.bg' 2023-09-21T14:03:03,467 adding 'data/bg/hg19.MotifSampler.bg' 2023-09-21T14:03:03,468 adding 'data/bg/hg38.MotifSampler.bg' 2023-09-21T14:03:03,470 adding 'data/bg/mm10.MotifSampler.bg' 2023-09-21T14:03:03,471 adding 'data/bg/mm9.MotifSampler.bg' 2023-09-21T14:03:03,473 adding 'data/bg/xenTro2.MotifSampler.bg' 2023-09-21T14:03:03,474 adding 'data/cfg/gimmemotifs.default.cfg' 2023-09-21T14:03:03,477 adding 'data/examples/Gm12878.CTCF.top500.w200.bed' 2023-09-21T14:03:03,532 adding 'data/examples/Gm12878.CTCF.top500.w200.fa' 2023-09-21T14:03:03,534 adding 'data/examples/MA0099.3.jaspar' 2023-09-21T14:03:03,538 adding 'data/examples/NRF1.bed' 2023-09-21T14:03:03,543 adding 'data/examples/TAp73alpha.bed' 2023-09-21T14:03:03,651 adding 'data/examples/TAp73alpha.fa' 2023-09-21T14:03:03,654 adding 'data/examples/example.pfm' 2023-09-21T14:03:03,952 adding 'data/examples/hg19.blood.most_variable.10k.txt' 2023-09-21T14:03:03,992 adding 'data/examples/hg19.blood.most_variable.1k.txt' 2023-09-21T14:03:03,994 adding 'data/examples/test.small.fa' 2023-09-21T14:03:04,037 adding 'data/motif_databases/CIS-BP.motif2factors.txt' 2023-09-21T14:03:04,829 adding 'data/motif_databases/CIS-BP.pfm' 2023-09-21T14:03:04,869 adding 'data/motif_databases/ENCODE.motif2factors.txt' 2023-09-21T14:03:05,074 adding 'data/motif_databases/ENCODE.pfm' 2023-09-21T14:03:05,086 adding 'data/motif_databases/HOCOMOCOv10_HUMAN.motif2factors.txt' 2023-09-21T14:03:05,178 adding 'data/motif_databases/HOCOMOCOv10_HUMAN.pfm' 2023-09-21T14:03:05,184 adding 'data/motif_databases/HOCOMOCOv10_MOUSE.motif2factors.txt' 2023-09-21T14:03:05,246 adding 'data/motif_databases/HOCOMOCOv10_MOUSE.pfm' 2023-09-21T14:03:05,251 adding 'data/motif_databases/HOCOMOCOv11_HUMAN.motif2factors.txt' 2023-09-21T14:03:05,289 adding 'data/motif_databases/HOCOMOCOv11_HUMAN.pfm' 2023-09-21T14:03:05,294 adding 'data/motif_databases/HOCOMOCOv11_MOUSE.motif2factors.txt' 2023-09-21T14:03:05,325 adding 'data/motif_databases/HOCOMOCOv11_MOUSE.pfm' 2023-09-21T14:03:05,331 adding 'data/motif_databases/HOMER.motif2factors.txt' 2023-09-21T14:03:05,370 adding 'data/motif_databases/HOMER.pfm' 2023-09-21T14:03:05,377 adding 'data/motif_databases/IMAGE.motif2factors.txt' 2023-09-21T14:03:05,546 adding 'data/motif_databases/IMAGE.pfm' 2023-09-21T14:03:05,560 adding 'data/motif_databases/JASPAR2018.motif2factors.txt' 2023-09-21T14:03:05,667 adding 'data/motif_databases/JASPAR2018.pfm' 2023-09-21T14:03:05,673 adding 'data/motif_databases/JASPAR2018_fungi.motif2factors.txt' 2023-09-21T14:03:05,683 adding 'data/motif_databases/JASPAR2018_fungi.pfm' 2023-09-21T14:03:05,685 adding 'data/motif_databases/JASPAR2018_insects.motif2factors.txt' 2023-09-21T14:03:05,690 adding 'data/motif_databases/JASPAR2018_insects.pfm' 2023-09-21T14:03:05,692 adding 'data/motif_databases/JASPAR2018_nematodes.motif2factors.txt' 2023-09-21T14:03:05,694 adding 'data/motif_databases/JASPAR2018_nematodes.pfm' 2023-09-21T14:03:05,697 adding 'data/motif_databases/JASPAR2018_plants.motif2factors.txt' 2023-09-21T14:03:05,737 adding 'data/motif_databases/JASPAR2018_plants.pfm' 2023-09-21T14:03:05,740 adding 'data/motif_databases/JASPAR2018_urochordates.motif2factors.txt' 2023-09-21T14:03:05,741 adding 'data/motif_databases/JASPAR2018_urochordates.pfm' 2023-09-21T14:03:05,744 adding 'data/motif_databases/JASPAR2018_vertebrates.motif2factors.txt' 2023-09-21T14:03:05,794 adding 'data/motif_databases/JASPAR2018_vertebrates.pfm' 2023-09-21T14:03:05,807 adding 'data/motif_databases/JASPAR2020.motif2factors.txt' 2023-09-21T14:03:05,972 adding 'data/motif_databases/JASPAR2020.pfm' 2023-09-21T14:03:05,980 adding 'data/motif_databases/JASPAR2020_fungi.motif2factors.txt' 2023-09-21T14:03:05,993 adding 'data/motif_databases/JASPAR2020_fungi.pfm' 2023-09-21T14:03:05,995 adding 'data/motif_databases/JASPAR2020_insects.motif2factors.txt' 2023-09-21T14:03:06,001 adding 'data/motif_databases/JASPAR2020_insects.pfm' 2023-09-21T14:03:06,003 adding 'data/motif_databases/JASPAR2020_nematodes.motif2factors.txt' 2023-09-21T14:03:06,006 adding 'data/motif_databases/JASPAR2020_nematodes.pfm' 2023-09-21T14:03:06,010 adding 'data/motif_databases/JASPAR2020_plants.motif2factors.txt' 2023-09-21T14:03:06,063 adding 'data/motif_databases/JASPAR2020_plants.pfm' 2023-09-21T14:03:06,066 adding 'data/motif_databases/JASPAR2020_urochordates.motif2factors.txt' 2023-09-21T14:03:06,067 adding 'data/motif_databases/JASPAR2020_urochordates.pfm' 2023-09-21T14:03:06,072 adding 'data/motif_databases/JASPAR2020_vertebrates.motif2factors.txt' 2023-09-21T14:03:06,161 adding 'data/motif_databases/JASPAR2020_vertebrates.pfm' 2023-09-21T14:03:06,182 adding 'data/motif_databases/JASPAR2022.motif2factors.txt' 2023-09-21T14:03:06,372 adding 'data/motif_databases/JASPAR2022.pfm' 2023-09-21T14:03:06,379 adding 'data/motif_databases/JASPAR2022_fungi.motif2factors.txt' 2023-09-21T14:03:06,389 adding 'data/motif_databases/JASPAR2022_fungi.pfm' 2023-09-21T14:03:06,391 adding 'data/motif_databases/JASPAR2022_insects.motif2factors.txt' 2023-09-21T14:03:06,398 adding 'data/motif_databases/JASPAR2022_insects.pfm' 2023-09-21T14:03:06,400 adding 'data/motif_databases/JASPAR2022_nematodes.motif2factors.txt' 2023-09-21T14:03:06,403 adding 'data/motif_databases/JASPAR2022_nematodes.pfm' 2023-09-21T14:03:06,409 adding 'data/motif_databases/JASPAR2022_plants.motif2factors.txt' 2023-09-21T14:03:06,471 adding 'data/motif_databases/JASPAR2022_plants.pfm' 2023-09-21T14:03:06,475 adding 'data/motif_databases/JASPAR2022_urochordates.motif2factors.txt' 2023-09-21T14:03:06,488 adding 'data/motif_databases/JASPAR2022_urochordates.pfm' 2023-09-21T14:03:06,496 adding 'data/motif_databases/JASPAR2022_vertebrates.motif2factors.txt' 2023-09-21T14:03:06,577 adding 'data/motif_databases/JASPAR2022_vertebrates.pfm' 2023-09-21T14:03:06,580 adding 'data/motif_databases/RSAT_insects.motif2factors.txt' 2023-09-21T14:03:06,605 adding 'data/motif_databases/RSAT_insects.pfm' 2023-09-21T14:03:06,608 adding 'data/motif_databases/RSAT_plants.motif2factors.txt' 2023-09-21T14:03:06,639 adding 'data/motif_databases/RSAT_plants.pfm' 2023-09-21T14:03:06,641 adding 'data/motif_databases/RSAT_vertebrates.motif2factors.txt' 2023-09-21T14:03:06,843 adding 'data/motif_databases/RSAT_vertebrates.pfm' 2023-09-21T14:03:06,853 adding 'data/motif_databases/SwissRegulon.motif2factors.txt' 2023-09-21T14:03:06,915 adding 'data/motif_databases/SwissRegulon.pfm' 2023-09-21T14:03:06,919 adding 'data/motif_databases/factorbook.motif2factors.txt' 2023-09-21T14:03:06,951 adding 'data/motif_databases/factorbook.pfm' 2023-09-21T14:03:06,985 adding 'data/motif_databases/gimme.invertebrate.v1.0.pwm' 2023-09-21T14:03:07,004 adding 'data/motif_databases/gimme.plant.v1.0.pwm' 2023-09-21T14:03:07,009 adding 'data/motif_databases/gimme.vertebrate.v3.1.factor2motifs.txt' 2023-09-21T14:03:07,013 adding 'data/motif_databases/gimme.vertebrate.v3.1.motif2factors.txt' 2023-09-21T14:03:07,118 adding 'data/motif_databases/gimme.vertebrate.v3.1.pwm' 2023-09-21T14:03:07,150 adding 'data/motif_databases/gimme.vertebrate.v5.0.motif2factors.txt' 2023-09-21T14:03:07,313 adding 'data/motif_databases/gimme.vertebrate.v5.0.pfm' 2023-09-21T14:03:07,322 adding 'data/score_dists/dic2_bg_mean_sd.txt' 2023-09-21T14:03:07,324 adding 'data/score_dists/dic2_mean_sd.txt' 2023-09-21T14:03:07,326 adding 'data/score_dists/total_wic_mean_score_dist.txt' 2023-09-21T14:03:07,328 adding 'data/templates/cluster_template.jinja.html' 2023-09-21T14:03:07,329 adding 'data/templates/report_template.jinja.html' 2023-09-21T14:03:07,331 adding 'data/templates/star.png' 2023-09-21T14:03:07,333 adding 'data/templates/star_silver.png' 2023-09-21T14:03:07,334 adding 'data/templates/table.tpl' 2023-09-21T14:03:07,336 adding 'data/templates/sortable/sortable-theme-slick.css' 2023-09-21T14:03:07,337 adding 'data/templates/sortable/sortable.min.js' 2023-09-21T14:03:07,339 adding 'gimmemotifs/__init__.py' 2023-09-21T14:03:07,340 adding 'gimmemotifs/_version.py' 2023-09-21T14:03:07,343 adding 'gimmemotifs/background.py' 2023-09-21T14:03:07,345 adding 'gimmemotifs/c_metrics.c' 2023-09-21T14:03:07,355 adding 'gimmemotifs/c_metrics.cpython-311-arm-linux-gnueabihf.so' 2023-09-21T14:03:07,358 adding 'gimmemotifs/cli.py' 2023-09-21T14:03:07,364 adding 'gimmemotifs/comparison.py' 2023-09-21T14:03:07,366 adding 'gimmemotifs/config.py' 2023-09-21T14:03:07,368 adding 'gimmemotifs/fasta.py' 2023-09-21T14:03:07,371 adding 'gimmemotifs/orthologs.py' 2023-09-21T14:03:07,373 adding 'gimmemotifs/plot.py' 2023-09-21T14:03:07,375 adding 'gimmemotifs/preprocessing.py' 2023-09-21T14:03:07,379 adding 'gimmemotifs/report.py' 2023-09-21T14:03:07,381 adding 'gimmemotifs/rocmetrics.py' 2023-09-21T14:03:07,383 adding 'gimmemotifs/stats.py' 2023-09-21T14:03:07,386 adding 'gimmemotifs/utils.py' 2023-09-21T14:03:07,388 adding 'gimmemotifs/commands/__init__.py' 2023-09-21T14:03:07,389 adding 'gimmemotifs/commands/background.py' 2023-09-21T14:03:07,390 adding 'gimmemotifs/commands/cluster.py' 2023-09-21T14:03:07,391 adding 'gimmemotifs/commands/diff.py' 2023-09-21T14:03:07,393 adding 'gimmemotifs/commands/location.py' 2023-09-21T14:03:07,394 adding 'gimmemotifs/commands/logo.py' 2023-09-21T14:03:07,395 adding 'gimmemotifs/commands/maelstrom.py' 2023-09-21T14:03:07,396 adding 'gimmemotifs/commands/match.py' 2023-09-21T14:03:07,398 adding 'gimmemotifs/commands/motif2factors.py' 2023-09-21T14:03:07,399 adding 'gimmemotifs/commands/motifs.py' 2023-09-21T14:03:07,401 adding 'gimmemotifs/commands/pfmscan.py' 2023-09-21T14:03:07,402 adding 'gimmemotifs/commands/prediction.py' 2023-09-21T14:03:07,403 adding 'gimmemotifs/commands/threshold.py' 2023-09-21T14:03:07,406 adding 'gimmemotifs/db/__init__.py' 2023-09-21T14:03:07,420 adding 'gimmemotifs/included_tools/AMD.bin' 2023-09-21T14:03:07,431 adding 'gimmemotifs/included_tools/BioProspector' 2023-09-21T14:03:07,678 adding 'gimmemotifs/included_tools/CreateBackgroundModel' 2023-09-21T14:03:07,699 adding 'gimmemotifs/included_tools/MDmodule' 2023-09-21T14:03:07,980 adding 'gimmemotifs/included_tools/MotifSampler' 2023-09-21T14:03:07,994 adding 'gimmemotifs/included_tools/__init__.py' 2023-09-21T14:03:08,059 adding 'gimmemotifs/included_tools/ameme' 2023-09-21T14:03:08,067 adding 'gimmemotifs/included_tools/clusterwd' 2023-09-21T14:03:08,072 adding 'gimmemotifs/included_tools/posmo' 2023-09-21T14:03:08,074 adding 'gimmemotifs/included_tools/ChIPMunk/ChIPMunk.sh' 2023-09-21T14:03:08,626 adding 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2023-09-21T14:03:08,711 adding 'gimmemotifs/motif/denovo.py' 2023-09-21T14:03:08,713 adding 'gimmemotifs/motif/prediction.py' 2023-09-21T14:03:08,715 adding 'gimmemotifs/motif/read.py' 2023-09-21T14:03:08,716 adding 'gimmemotifs/motif/validation.py' 2023-09-21T14:03:08,718 adding 'gimmemotifs/scanner/__init__.py' 2023-09-21T14:03:08,721 adding 'gimmemotifs/scanner/base.py' 2023-09-21T14:03:08,723 adding 'gimmemotifs/scanner/utils.py' 2023-09-21T14:03:08,725 adding 'gimmemotifs/tools/__init__.py' 2023-09-21T14:03:08,726 adding 'gimmemotifs/tools/amd.py' 2023-09-21T14:03:08,728 adding 'gimmemotifs/tools/bioprospector.py' 2023-09-21T14:03:08,729 adding 'gimmemotifs/tools/chipmunk.py' 2023-09-21T14:03:08,730 adding 'gimmemotifs/tools/dinamo.py' 2023-09-21T14:03:08,732 adding 'gimmemotifs/tools/dreme.py' 2023-09-21T14:03:08,733 adding 'gimmemotifs/tools/gadem.py' 2023-09-21T14:03:08,734 adding 'gimmemotifs/tools/hms.py' 2023-09-21T14:03:08,736 adding 'gimmemotifs/tools/homer.py' 2023-09-21T14:03:08,737 adding 'gimmemotifs/tools/improbizer.py' 2023-09-21T14:03:08,738 adding 'gimmemotifs/tools/jaspar.py' 2023-09-21T14:03:08,740 adding 'gimmemotifs/tools/mdmodule.py' 2023-09-21T14:03:08,741 adding 'gimmemotifs/tools/meme.py' 2023-09-21T14:03:08,742 adding 'gimmemotifs/tools/memew.py' 2023-09-21T14:03:08,744 adding 'gimmemotifs/tools/motifprogram.py' 2023-09-21T14:03:08,745 adding 'gimmemotifs/tools/motifsampler.py' 2023-09-21T14:03:08,747 adding 'gimmemotifs/tools/posmo.py' 2023-09-21T14:03:08,748 adding 'gimmemotifs/tools/prosampler.py' 2023-09-21T14:03:08,749 adding 'gimmemotifs/tools/rpmcmc.py' 2023-09-21T14:03:08,750 adding 'gimmemotifs/tools/trawler.py' 2023-09-21T14:03:08,752 adding 'gimmemotifs/tools/weeder.py' 2023-09-21T14:03:08,753 adding 'gimmemotifs/tools/xxmotif.py' 2023-09-21T14:03:08,754 adding 'gimmemotifs/tools/yamda.py' 2023-09-21T14:03:08,756 adding 'gimmemotifs-0.18.0.data/scripts/combine_peaks' 2023-09-21T14:03:08,758 adding 'gimmemotifs-0.18.0.data/scripts/coverage_table' 2023-09-21T14:03:08,759 adding 'gimmemotifs-0.18.0.data/scripts/gimme' 2023-09-21T14:03:08,761 adding 'gimmemotifs-0.18.0.dist-info/COPYING' 2023-09-21T14:03:08,762 adding 'gimmemotifs-0.18.0.dist-info/METADATA' 2023-09-21T14:03:08,763 adding 'gimmemotifs-0.18.0.dist-info/WHEEL' 2023-09-21T14:03:08,764 adding 'gimmemotifs-0.18.0.dist-info/top_level.txt' 2023-09-21T14:03:08,767 adding 'gimmemotifs-0.18.0.dist-info/RECORD' 2023-09-21T14:03:08,884 removing build/bdist.linux-armv7l/wheel 2023-09-21T14:03:09,091 Building wheel for gimmemotifs (setup.py): finished with status 'done' 2023-09-21T14:03:09,224 Created wheel for gimmemotifs: filename=gimmemotifs-0.18.0-cp311-cp311-linux_armv7l.whl size=11228778 sha256=7f07c39e0ed77634a729f3bfac9e4b3c6ef658209ac16b450ddb82ad3506dfa9 2023-09-21T14:03:09,226 Stored in directory: /tmp/pip-ephem-wheel-cache-odx905m4/wheels/d2/e0/bd/236585a8aaad86d1d25432e4ff6eaf69f5225fbdcb6be1352f 2023-09-21T14:03:09,246 Successfully built gimmemotifs 2023-09-21T14:03:09,518 Removed build tracker: '/tmp/pip-build-tracker-cz3s_ctr'