2023-09-21T19:17:58,025 Created temporary directory: /tmp/pip-build-tracker-b_r52lec 2023-09-21T19:17:58,026 Initialized build tracking at /tmp/pip-build-tracker-b_r52lec 2023-09-21T19:17:58,027 Created build tracker: /tmp/pip-build-tracker-b_r52lec 2023-09-21T19:17:58,027 Entered build tracker: /tmp/pip-build-tracker-b_r52lec 2023-09-21T19:17:58,028 Created temporary directory: /tmp/pip-wheel-_wk3uyyb 2023-09-21T19:17:58,031 Created temporary directory: /tmp/pip-ephem-wheel-cache-5lwlxn83 2023-09-21T19:17:58,053 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-21T19:17:58,057 2 location(s) to search for versions of pgenlib: 2023-09-21T19:17:58,057 * https://pypi.org/simple/pgenlib/ 2023-09-21T19:17:58,057 * https://www.piwheels.org/simple/pgenlib/ 2023-09-21T19:17:58,058 Fetching project page and analyzing links: https://pypi.org/simple/pgenlib/ 2023-09-21T19:17:58,058 Getting page https://pypi.org/simple/pgenlib/ 2023-09-21T19:17:58,060 Found index url https://pypi.org/simple/ 2023-09-21T19:17:58,277 Fetched page https://pypi.org/simple/pgenlib/ as application/vnd.pypi.simple.v1+json 2023-09-21T19:17:58,287 Found link https://files.pythonhosted.org/packages/d9/cc/f3bbaa8da897e9a04e1a885183a0c533ba563bb3a1dbfba6680704473336/Pgenlib-0.81.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.1 2023-09-21T19:17:58,288 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/22/06/d83bcf26ea2212baccc88b3771c78dce0eff643a1293aa3f8993c242fe02/Pgenlib-0.81.2-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,289 Found link https://files.pythonhosted.org/packages/6d/f7/c286a64ec213ea42bfa67b20ce1271b0b8699ac3880854657f8ed1620759/Pgenlib-0.81.2.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.2 2023-09-21T19:17:58,290 Found link https://files.pythonhosted.org/packages/38/09/74ec09b0c9ddde6a3562898507b99b47adde5350248f2899b59edcc082b0/Pgenlib-0.81.3.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.3 2023-09-21T19:17:58,291 Found link https://files.pythonhosted.org/packages/29/d3/311512e956d1bc898cd6020e15691e2778e1bf3a1c2e01eadbb6031d8bd5/Pgenlib-0.82.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.82.0 2023-09-21T19:17:58,291 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/2b/91/1d7b72b61c624763fc29c3e54df394bc611080a3dc2176af2332257e8fac/Pgenlib-0.82.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,292 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/30/d1/166d130225f03033df8ca688ef54dca200fb3de3419f0edc914afd21a3a7/Pgenlib-0.82.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,293 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/be/d5/85dc2412def8644cccfafe6722e7d1c5411c9725366156eef4aec843ba95/Pgenlib-0.82.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,293 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/a1/74/ade2137ac2eee449bfa959f5808cc6d1bdc6cec4cd9b4fabcd416246a889/Pgenlib-0.82.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,294 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/9a/65/79600073fc41faaa2b008b1bedf9233125aeaad404a973e563810268a626/Pgenlib-0.82.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,294 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/29/20/876e704d95b3ca26e7a554532385d52f2133cd99d2f132a29fb16062cb4d/Pgenlib-0.82.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,295 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b5/32/8dbf9cb1a3a3a6950deab99e0515a753273396ef1770b5d2491e1f8eaba9/Pgenlib-0.82.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,296 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/fc/24/2e6994141f63fd6c129b0bd0bbc9ef8df91e98b171a5ae0a5aeb7a01532c/Pgenlib-0.82.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,296 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/54/8e/3a2eef4571d6d2c8604a3810c3e092c9e145839934dde6c91ecf4be63be8/Pgenlib-0.82.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,297 Found link https://files.pythonhosted.org/packages/9b/d1/73c8eb879691b5ef443cf3c26e801590a7eac657264f80538c7541266fa8/Pgenlib-0.82.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.82.1 2023-09-21T19:17:58,298 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/95/0a/86ce9fc2291a83b63817ac43b8f2924af9c02746b4f20c44142ce9f8a4ce/Pgenlib-0.83.0-cp310-cp310-macosx_13_0_arm64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,298 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/54/73/924728769d9bd1e738190588c1ac1c2fc53d65641565c013ac1d79fe8403/Pgenlib-0.83.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,299 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/3b/22/29e510423558b22e98374496ef7c8b178c5f4d47f6e9c1fe4999c6ee8761/Pgenlib-0.83.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,299 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/7c/a9/5987776baf730f0f8e8b44b7c358f8b2b44cb24f9fa938b9f6dcb8724f69/Pgenlib-0.83.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,300 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/88/64/2df132fbea4b3aad80aab161c90e9f24e5d494917605b1f01f522950d07e/Pgenlib-0.83.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,300 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/02/4e/df2808d3f87f77419e0abb68544f0f220c261a7eed6433c7150eff1fec49/Pgenlib-0.83.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,301 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/c1/14/00aaf84a05ae9b25f51af36f285614e42c557860051fe16ef0860b03b3c6/Pgenlib-0.83.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,301 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b7/a8/832b27db6e563e46c40e59714a0adf09959d67d964feb5ef84b51f89a0b9/Pgenlib-0.83.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,302 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/5b/ba/ba9401daf559588f84aa8ff82b55ce1aac6339a69028a3b14748af74539f/Pgenlib-0.83.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,302 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b6/d7/6cf098fd410209d749e41610daeb12b440ea603a45f787a49474461c6043/Pgenlib-0.83.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,304 Found link https://files.pythonhosted.org/packages/b5/f4/6cd16a7f543438c5910cec68bd5d49d231152753f3f53f4dda1322305522/Pgenlib-0.83.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.83.0 2023-09-21T19:17:58,304 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/16/24/5e5f3f751fc014e67c567073089e5ff22887c890ddcb33b2eee234b2ff66/Pgenlib-0.90.0-cp310-cp310-macosx_13_0_arm64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,305 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/43/45/b23b200529cc05e27de60c6623e3c272f3babacd46ba7ca04f8ba8cee212/Pgenlib-0.90.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,305 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/95/af/14f03aa5e6568810347aef280eb57b82a5a45e03f33c9653d56685a5157c/Pgenlib-0.90.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,306 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/59/d6/7157c61da0ebb0d2f05ba178ef1c57e567054192e47153ea29952de377c9/Pgenlib-0.90.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,306 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/4b/62/3d03109e3a79b4981cde01c00f7d63b2f850599d3b4c06125e0561b0dbd7/Pgenlib-0.90.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,307 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/7f/75/03cbd46f9f1cb21c22745c4548f85b5e548b1e5a5cbb4d69064f111c3f77/Pgenlib-0.90.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,307 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/da/25/eef614e9ea13964aed3aa93211d44fc0a53591fe59901def7f0842c26259/Pgenlib-0.90.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,307 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/f3/b0/01e1c04e3fe156252d1ebb82f362da5642a128d72c5a67c481b26986d450/Pgenlib-0.90.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,308 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/05/cc/185166c604f18f1d60291fd0d407d6c02b26e712af8e39bfaabfe9be57ce/Pgenlib-0.90.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,308 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/45/60/dd584321eedc419f7b1aee92fc15110070714ca949ee012bf5dddffec6cf/Pgenlib-0.90.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,309 Found link https://files.pythonhosted.org/packages/dc/26/3150424408411a6f326db5b2f61a5accf900dfe3d287f4452e73d62b0b01/Pgenlib-0.90.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.90.0 2023-09-21T19:17:58,310 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/0a/24/eb4944605bf1ad5142466d268aac02ca2c1e57242511578ae521c3427e77/Pgenlib-0.90.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,311 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/47/c5/b8acab2c2db8acbf153d4e1284236838d31c0f17df797f04f15686e5f15d/Pgenlib-0.90.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,311 Skipping link: No binaries permitted for pgenlib: 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https://files.pythonhosted.org/packages/b7/6d/db7f7f9acb0dd3c0a39055738727a047371595a3c79f13c29e77b633eb72/Pgenlib-0.90.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,313 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/e3/84/c69234c8f522d7d67459ad1288fb516a39f588dcab297b29a619ee3f340b/Pgenlib-0.90.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,314 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/82/44/df286e42696ea0bf1f817e5a7a924f268ee25d4644c654f4b89f14375705/Pgenlib-0.90.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,314 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/c3/c3/30647c9cbafe729c786891bb3c873535bf8d667fb6b218642ada95738517/Pgenlib-0.90.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,315 Found link https://files.pythonhosted.org/packages/75/02/d5151e065fd355fc365adf472017db0f25f199f5a550df1d4bb9808ba67d/Pgenlib-0.90.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.90.1 2023-09-21T19:17:58,316 Fetching project page and analyzing links: https://www.piwheels.org/simple/pgenlib/ 2023-09-21T19:17:58,317 Getting page https://www.piwheels.org/simple/pgenlib/ 2023-09-21T19:17:58,318 Found index url https://www.piwheels.org/simple/ 2023-09-21T19:17:58,489 Fetched page https://www.piwheels.org/simple/pgenlib/ as text/html 2023-09-21T19:17:58,494 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.1-cp39-cp39-linux_armv7l.whl#sha256=e603ad759fc12e178a3c2d3fb74b25cbb9d9ffcaf1d24dfac70f02101dab2684 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,495 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.1-cp39-cp39-linux_armv6l.whl#sha256=e603ad759fc12e178a3c2d3fb74b25cbb9d9ffcaf1d24dfac70f02101dab2684 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,496 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.0-cp39-cp39-linux_armv7l.whl#sha256=3893959a4ddc9a66babc9c59a168b24d56baa0b009e29e55873dd5640e4607fd (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,496 Skipping link: No binaries permitted for pgenlib: 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https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.1-cp39-cp39-linux_armv7l.whl#sha256=7f2cd443fbc7956edef6af632c8b31dc2b48cd9cca92bacece82495cdff52291 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,498 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.1-cp39-cp39-linux_armv6l.whl#sha256=7f2cd443fbc7956edef6af632c8b31dc2b48cd9cca92bacece82495cdff52291 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,499 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.0-cp39-cp39-linux_armv7l.whl#sha256=b38d7233c5515f730969499da3b95e95f64109573755cdda562026109c999c33 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,499 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.0-cp39-cp39-linux_armv6l.whl#sha256=b38d7233c5515f730969499da3b95e95f64109573755cdda562026109c999c33 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,499 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp39-cp39-linux_armv7l.whl#sha256=5a7e6ce67f2000041a2e5d373924f58245f07fb04f09b9c5740c8554ff44d333 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,500 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp39-cp39-linux_armv6l.whl#sha256=5a7e6ce67f2000041a2e5d373924f58245f07fb04f09b9c5740c8554ff44d333 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,501 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.2-cp39-cp39-linux_armv7l.whl#sha256=2e0ad339664cbc60a4ae0b3a935afcf56d3e1a344387d8327ae50b03dce0d852 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,501 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.2-cp39-cp39-linux_armv6l.whl#sha256=2e0ad339664cbc60a4ae0b3a935afcf56d3e1a344387d8327ae50b03dce0d852 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,502 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.1-cp39-cp39-linux_armv7l.whl#sha256=7fe4ecefc0464d30dc029a926937523d919f28fa0320e6522fa229764a168909 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,502 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.1-cp39-cp39-linux_armv6l.whl#sha256=7fe4ecefc0464d30dc029a926937523d919f28fa0320e6522fa229764a168909 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-21T19:17:58,503 Skipping link: not a file: https://www.piwheels.org/simple/pgenlib/ 2023-09-21T19:17:58,503 Skipping link: not a file: https://pypi.org/simple/pgenlib/ 2023-09-21T19:17:58,522 Given no hashes to check 1 links for project 'pgenlib': discarding no candidates 2023-09-21T19:17:58,540 Collecting pgenlib==0.81.3 2023-09-21T19:17:58,543 Created temporary directory: /tmp/pip-unpack-ybh4i326 2023-09-21T19:17:59,040 Downloading Pgenlib-0.81.3.tar.gz (386 kB) 2023-09-21T19:17:59,279 Added pgenlib==0.81.3 from https://files.pythonhosted.org/packages/38/09/74ec09b0c9ddde6a3562898507b99b47adde5350248f2899b59edcc082b0/Pgenlib-0.81.3.tar.gz to build tracker '/tmp/pip-build-tracker-b_r52lec' 2023-09-21T19:17:59,285 Created temporary directory: /tmp/pip-build-env-k1r_wq_1 2023-09-21T19:17:59,289 Installing build dependencies: started 2023-09-21T19:17:59,291 Running command pip subprocess to install build dependencies 2023-09-21T19:18:00,569 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-21T19:18:01,100 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-21T19:18:02,698 Collecting setuptools 2023-09-21T19:18:02,699 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-21T19:18:02,705 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-21T19:18:02,924 Collecting wheel 2023-09-21T19:18:02,941 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-21T19:18:03,055 Collecting oldest-supported-numpy>=2022.8.16 2023-09-21T19:18:03,072 Using cached https://www.piwheels.org/simple/oldest-supported-numpy/oldest_supported_numpy-2023.8.3-py3-none-any.whl (4.8 kB) 2023-09-21T19:18:04,444 Collecting Cython>=0.29.21 2023-09-21T19:18:04,445 Obtaining dependency information for Cython>=0.29.21 from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata 2023-09-21T19:18:04,450 Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-21T19:18:05,483 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-21T19:18:05,490 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-21T19:18:05,497 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-21T19:18:05,504 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-21T19:18:05,511 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-21T19:18:05,881 Collecting numpy==1.23.2 (from oldest-supported-numpy>=2022.8.16) 2023-09-21T19:18:06,741 Using cached https://www.piwheels.org/simple/numpy/numpy-1.23.2-cp311-cp311-linux_armv7l.whl (12.4 MB) 2023-09-21T19:18:07,131 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-21T19:18:07,171 Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB) 2023-09-21T19:18:09,812 Installing collected packages: wheel, setuptools, numpy, Cython, oldest-supported-numpy 2023-09-21T19:18:10,041 Creating /tmp/pip-build-env-k1r_wq_1/overlay/local/bin 2023-09-21T19:18:10,043 changing mode of /tmp/pip-build-env-k1r_wq_1/overlay/local/bin/wheel to 755 2023-09-21T19:18:21,967 changing mode of /tmp/pip-build-env-k1r_wq_1/overlay/local/bin/f2py to 755 2023-09-21T19:18:21,969 changing mode of /tmp/pip-build-env-k1r_wq_1/overlay/local/bin/f2py3 to 755 2023-09-21T19:18:21,971 changing mode of /tmp/pip-build-env-k1r_wq_1/overlay/local/bin/f2py3.11 to 755 2023-09-21T19:18:24,723 changing mode of /tmp/pip-build-env-k1r_wq_1/overlay/local/bin/cygdb to 755 2023-09-21T19:18:24,725 changing mode of /tmp/pip-build-env-k1r_wq_1/overlay/local/bin/cython to 755 2023-09-21T19:18:24,728 changing mode of /tmp/pip-build-env-k1r_wq_1/overlay/local/bin/cythonize to 755 2023-09-21T19:18:24,781 Successfully installed Cython-3.0.2 numpy-1.23.2 oldest-supported-numpy-2023.8.3 setuptools-68.2.2 wheel-0.41.2 2023-09-21T19:18:25,446 Installing build dependencies: finished with status 'done' 2023-09-21T19:18:25,450 Getting requirements to build wheel: started 2023-09-21T19:18:25,451 Running command Getting requirements to build wheel 2023-09-21T19:18:33,229 Compiling src/pgenlib/pgenlib.pyx because it changed. 2023-09-21T19:18:33,230 [1/1] Cythonizing src/pgenlib/pgenlib.pyx 2023-09-21T19:18:33,297 running egg_info 2023-09-21T19:18:33,305 writing src/Pgenlib.egg-info/PKG-INFO 2023-09-21T19:18:33,309 writing dependency_links to src/Pgenlib.egg-info/dependency_links.txt 2023-09-21T19:18:33,311 writing top-level names to src/Pgenlib.egg-info/top_level.txt 2023-09-21T19:18:33,332 dependency /tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-21T19:18:33,332 dependency /tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-21T19:18:33,333 dependency /tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-21T19:18:33,334 dependency /tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-21T19:18:33,334 dependency /tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-21T19:18:33,342 reading manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-09-21T19:18:33,345 reading manifest template 'MANIFEST.in' 2023-09-21T19:18:33,348 adding license file 'LICENSE' 2023-09-21T19:18:33,351 writing manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-09-21T19:18:33,750 Getting requirements to build wheel: finished with status 'done' 2023-09-21T19:18:33,759 Created temporary directory: /tmp/pip-modern-metadata-bn09_oih 2023-09-21T19:18:33,761 Preparing metadata (pyproject.toml): started 2023-09-21T19:18:33,763 Running command Preparing metadata (pyproject.toml) 2023-09-21T19:18:35,234 running dist_info 2023-09-21T19:18:35,255 creating /tmp/pip-modern-metadata-bn09_oih/Pgenlib.egg-info 2023-09-21T19:18:35,260 writing /tmp/pip-modern-metadata-bn09_oih/Pgenlib.egg-info/PKG-INFO 2023-09-21T19:18:35,263 writing dependency_links to /tmp/pip-modern-metadata-bn09_oih/Pgenlib.egg-info/dependency_links.txt 2023-09-21T19:18:35,265 writing top-level names to /tmp/pip-modern-metadata-bn09_oih/Pgenlib.egg-info/top_level.txt 2023-09-21T19:18:35,266 writing manifest file '/tmp/pip-modern-metadata-bn09_oih/Pgenlib.egg-info/SOURCES.txt' 2023-09-21T19:18:35,284 dependency /tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-21T19:18:35,284 dependency /tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-21T19:18:35,285 dependency /tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-21T19:18:35,285 dependency /tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-21T19:18:35,286 dependency /tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-21T19:18:35,290 reading manifest file '/tmp/pip-modern-metadata-bn09_oih/Pgenlib.egg-info/SOURCES.txt' 2023-09-21T19:18:35,292 reading manifest template 'MANIFEST.in' 2023-09-21T19:18:35,294 adding license file 'LICENSE' 2023-09-21T19:18:35,296 writing manifest file '/tmp/pip-modern-metadata-bn09_oih/Pgenlib.egg-info/SOURCES.txt' 2023-09-21T19:18:35,297 creating '/tmp/pip-modern-metadata-bn09_oih/Pgenlib-0.81.3.dist-info' 2023-09-21T19:18:35,521 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-21T19:18:35,526 Source in /tmp/pip-wheel-_wk3uyyb/pgenlib_73d31135bcb646cd858e34b73ac916dc has version 0.81.3, which satisfies requirement pgenlib==0.81.3 from https://files.pythonhosted.org/packages/38/09/74ec09b0c9ddde6a3562898507b99b47adde5350248f2899b59edcc082b0/Pgenlib-0.81.3.tar.gz 2023-09-21T19:18:35,526 Removed pgenlib==0.81.3 from https://files.pythonhosted.org/packages/38/09/74ec09b0c9ddde6a3562898507b99b47adde5350248f2899b59edcc082b0/Pgenlib-0.81.3.tar.gz from build tracker '/tmp/pip-build-tracker-b_r52lec' 2023-09-21T19:18:35,531 Created temporary directory: /tmp/pip-unpack-ofonxkg9 2023-09-21T19:18:35,532 Created temporary directory: /tmp/pip-unpack-lkht1yw2 2023-09-21T19:18:35,535 Building wheels for collected packages: pgenlib 2023-09-21T19:18:35,539 Created temporary directory: /tmp/pip-wheel-zftun507 2023-09-21T19:18:35,540 Destination directory: /tmp/pip-wheel-zftun507 2023-09-21T19:18:35,542 Building wheel for pgenlib (pyproject.toml): started 2023-09-21T19:18:35,544 Running command Building wheel for pgenlib (pyproject.toml) 2023-09-21T19:18:37,203 running bdist_wheel 2023-09-21T19:18:37,247 running build 2023-09-21T19:18:37,248 running build_ext 2023-09-21T19:18:37,254 building 'pgenlib' extension 2023-09-21T19:18:37,254 creating build 2023-09-21T19:18:37,255 creating build/temp.linux-armv7l-cpython-311 2023-09-21T19:18:37,255 creating build/temp.linux-armv7l-cpython-311/src 2023-09-21T19:18:37,256 creating build/temp.linux-armv7l-cpython-311/src/pgenlib 2023-09-21T19:18:37,257 creating build/temp.linux-armv7l-cpython-311/src/plink2 2023-09-21T19:18:37,258 creating build/temp.linux-armv7l-cpython-311/src/plink2/include 2023-09-21T19:18:37,259 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/pgenlib/pgenlib.cpp -o build/temp.linux-armv7l-cpython-311/src/pgenlib/pgenlib.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-21T19:18:37,532 In file included from /tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-21T19:18:37,533 from /tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-21T19:18:37,534 from /tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-21T19:18:37,534 from src/pgenlib/pgenlib.cpp:1208: 2023-09-21T19:18:37,535 /tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-21T19:18:37,535 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-21T19:18:37,536 | ^~~~~~~ 2023-09-21T19:18:37,592 src/pgenlib/pgenlib.cpp:1459: warning: "likely" redefined 2023-09-21T19:18:37,593 1459 | #define likely(x) __builtin_expect(!!(x), 1) 2023-09-21T19:18:37,593 | 2023-09-21T19:18:37,594 In file included from src/pgenlib/../plink2/include/plink2_bits.h:23, 2023-09-21T19:18:37,594 from src/pgenlib/../plink2/include/pgenlib_misc.h:77, 2023-09-21T19:18:37,595 from src/pgenlib/../plink2/pgenlib_ffi_support.h:20, 2023-09-21T19:18:37,595 from src/pgenlib/pgenlib.cpp:1213: 2023-09-21T19:18:37,596 src/pgenlib/../plink2/include/plink2_base.h:252: note: this is the location of the previous definition 2023-09-21T19:18:37,596 252 | # define likely(expr) __builtin_expect(!!(expr), 1) 2023-09-21T19:18:37,597 | 2023-09-21T19:18:37,597 src/pgenlib/pgenlib.cpp:1460: warning: "unlikely" redefined 2023-09-21T19:18:37,598 1460 | #define unlikely(x) __builtin_expect(!!(x), 0) 2023-09-21T19:18:37,598 | 2023-09-21T19:18:37,599 src/pgenlib/../plink2/include/plink2_base.h:253: note: this is the location of the previous definition 2023-09-21T19:18:37,599 253 | # define unlikely(expr) __builtin_expect(!!(expr), 0) 2023-09-21T19:18:37,600 | 2023-09-21T19:18:38,793 src/pgenlib/pgenlib.cpp: In function ‘int __pyx_pw_7pgenlib_10PgenReader_1__cinit__(PyObject*, PyObject*, PyObject*)’: 2023-09-21T19:18:38,793 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,794 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,795 | ^ 2023-09-21T19:18:38,796 src/pgenlib/pgenlib.cpp:6973:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,796 6973 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,797 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,798 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,798 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,799 | ^ 2023-09-21T19:18:38,799 src/pgenlib/pgenlib.cpp:6975:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,800 6975 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,801 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,802 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,803 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,803 | ^ 2023-09-21T19:18:38,804 src/pgenlib/pgenlib.cpp:6977:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,805 6977 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,806 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,807 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,808 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,809 | ^ 2023-09-21T19:18:38,810 src/pgenlib/pgenlib.cpp:6979:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,811 6979 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,811 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,812 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,812 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,813 | ^ 2023-09-21T19:18:38,813 src/pgenlib/pgenlib.cpp:6992:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,814 6992 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,815 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,815 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,816 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,816 | ^ 2023-09-21T19:18:38,817 src/pgenlib/pgenlib.cpp:6999:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,817 6999 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,818 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,819 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,819 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,820 | ^ 2023-09-21T19:18:38,820 src/pgenlib/pgenlib.cpp:7006:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,821 7006 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,822 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,823 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,823 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,824 | ^ 2023-09-21T19:18:38,825 src/pgenlib/pgenlib.cpp:7021:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,826 7021 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,826 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,827 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,827 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,828 | ^ 2023-09-21T19:18:38,829 src/pgenlib/pgenlib.cpp:7023:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,830 7023 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,830 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,831 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,832 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,833 | ^ 2023-09-21T19:18:38,833 src/pgenlib/pgenlib.cpp:7025:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,834 7025 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,835 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,882 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read*)’: 2023-09-21T19:18:38,883 src/pgenlib/pgenlib.cpp:9090:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:38,884 9090 | __pyx_t_8 = ((__pyx_t_10[0]) < __pyx_v_subset_size); 2023-09-21T19:18:38,885 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,905 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_11read(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:38,906 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,907 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,907 | ^ 2023-09-21T19:18:38,908 src/pgenlib/pgenlib.cpp:9446:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,908 9446 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,909 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,909 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,910 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,911 | ^ 2023-09-21T19:18:38,912 src/pgenlib/pgenlib.cpp:9448:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,913 9448 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,914 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,915 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,916 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,918 | ^ 2023-09-21T19:18:38,919 src/pgenlib/pgenlib.cpp:9450:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,920 9450 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,922 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,923 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,924 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,926 | ^ 2023-09-21T19:18:38,927 src/pgenlib/pgenlib.cpp:9463:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,928 9463 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,929 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,931 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,932 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,933 | ^ 2023-09-21T19:18:38,934 src/pgenlib/pgenlib.cpp:9473:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,935 9473 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,936 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,937 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,938 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,940 | ^ 2023-09-21T19:18:38,941 src/pgenlib/pgenlib.cpp:9488:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,942 9488 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,943 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,943 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages*)’: 2023-09-21T19:18:38,944 src/pgenlib/pgenlib.cpp:9781:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:38,945 9781 | __pyx_t_8 = ((__pyx_t_10[0]) < __pyx_v_subset_size); 2023-09-21T19:18:38,945 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,962 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_13read_dosages(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:38,963 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,963 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,964 | ^ 2023-09-21T19:18:38,964 src/pgenlib/pgenlib.cpp:10077:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,965 10077 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,965 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,966 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,967 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,968 | ^ 2023-09-21T19:18:38,968 src/pgenlib/pgenlib.cpp:10079:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,969 10079 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,970 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,971 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,972 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,973 | ^ 2023-09-21T19:18:38,974 src/pgenlib/pgenlib.cpp:10081:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,975 10081 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,976 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,977 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,978 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,979 | ^ 2023-09-21T19:18:38,980 src/pgenlib/pgenlib.cpp:10094:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,981 10094 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,982 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,982 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,983 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,984 | ^ 2023-09-21T19:18:38,985 src/pgenlib/pgenlib.cpp:10104:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,985 10104 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,986 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,988 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:38,989 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:38,990 | ^ 2023-09-21T19:18:38,991 src/pgenlib/pgenlib.cpp:10119:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:38,993 10119 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:38,994 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:38,995 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int)’: 2023-09-21T19:18:38,997 src/pgenlib/pgenlib.cpp:10379:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:38,998 10379 | __pyx_t_7 = ((__pyx_t_9[0]) < __pyx_v_subset_size); 2023-09-21T19:18:38,999 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,008 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_15read_alleles(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:39,009 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,010 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,011 | ^ 2023-09-21T19:18:39,011 src/pgenlib/pgenlib.cpp:10594:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,012 10594 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,014 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,015 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,015 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,017 | ^ 2023-09-21T19:18:39,063 src/pgenlib/pgenlib.cpp:10596:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,063 10596 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,064 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,065 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,065 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,066 | ^ 2023-09-21T19:18:39,067 src/pgenlib/pgenlib.cpp:10609:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,067 10609 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,068 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,068 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, PyArrayObject*, int)’: 2023-09-21T19:18:39,069 src/pgenlib/pgenlib.cpp:10907:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,070 10907 | __pyx_t_7 = ((__pyx_t_9[0]) < (2 * __pyx_v_subset_size)); 2023-09-21T19:18:39,070 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,071 src/pgenlib/pgenlib.cpp:10965:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,072 10965 | __pyx_t_7 = ((__pyx_t_9[0]) < __pyx_v_subset_size); 2023-09-21T19:18:39,072 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,073 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_17read_alleles_and_phasepresent(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:39,074 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,074 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,075 | ^ 2023-09-21T19:18:39,075 src/pgenlib/pgenlib.cpp:11202:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,076 11202 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,076 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,077 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,078 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,078 | ^ 2023-09-21T19:18:39,079 src/pgenlib/pgenlib.cpp:11204:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,079 11204 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,080 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,080 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,081 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,081 | ^ 2023-09-21T19:18:39,082 src/pgenlib/pgenlib.cpp:11206:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,083 11206 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,083 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,084 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,084 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,085 | ^ 2023-09-21T19:18:39,085 src/pgenlib/pgenlib.cpp:11219:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,086 11219 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,087 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,087 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,088 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,088 | ^ 2023-09-21T19:18:39,089 src/pgenlib/pgenlib.cpp:11229:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,090 11229 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,090 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,091 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal8(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal8*)’: 2023-09-21T19:18:39,092 src/pgenlib/pgenlib.cpp:11508:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,092 11508 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,093 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,094 src/pgenlib/pgenlib.cpp:11566:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,094 11566 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2023-09-21T19:18:39,095 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,102 src/pgenlib/pgenlib.cpp:11793:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,103 11793 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_subset_size); 2023-09-21T19:18:39,104 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,108 src/pgenlib/pgenlib.cpp:11851:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,109 11851 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,109 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,128 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal32(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal32*)’: 2023-09-21T19:18:39,129 src/pgenlib/pgenlib.cpp:12453:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,129 12453 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,130 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,134 src/pgenlib/pgenlib.cpp:12511:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,135 12511 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2023-09-21T19:18:39,135 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,147 src/pgenlib/pgenlib.cpp:12738:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,148 12738 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_subset_size); 2023-09-21T19:18:39,149 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,153 src/pgenlib/pgenlib.cpp:12796:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,154 12796 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,155 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,175 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal64(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal64*)’: 2023-09-21T19:18:39,176 src/pgenlib/pgenlib.cpp:13398:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,177 13398 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,177 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,181 src/pgenlib/pgenlib.cpp:13456:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,182 13456 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2023-09-21T19:18:39,183 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,194 src/pgenlib/pgenlib.cpp:13683:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,195 13683 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_subset_size); 2023-09-21T19:18:39,196 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,200 src/pgenlib/pgenlib.cpp:13741:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,201 13741 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,202 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,245 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_19read_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:39,245 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,246 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,246 | ^ 2023-09-21T19:18:39,247 src/pgenlib/pgenlib.cpp:14590:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,247 14590 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,248 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,248 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,249 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,249 | ^ 2023-09-21T19:18:39,250 src/pgenlib/pgenlib.cpp:14592:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,250 14592 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,251 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,251 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,252 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,252 | ^ 2023-09-21T19:18:39,253 src/pgenlib/pgenlib.cpp:14594:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,253 14594 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,254 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,254 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,255 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,255 | ^ 2023-09-21T19:18:39,256 src/pgenlib/pgenlib.cpp:14596:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,256 14596 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,257 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,258 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,258 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,259 | ^ 2023-09-21T19:18:39,260 src/pgenlib/pgenlib.cpp:14598:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,260 14598 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,261 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,262 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,262 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,263 | ^ 2023-09-21T19:18:39,264 src/pgenlib/pgenlib.cpp:14611:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,264 14611 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,265 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,266 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,266 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,267 | ^ 2023-09-21T19:18:39,268 src/pgenlib/pgenlib.cpp:14621:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,268 14621 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,269 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,269 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,270 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,270 | ^ 2023-09-21T19:18:39,271 src/pgenlib/pgenlib.cpp:14631:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,271 14631 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,272 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,272 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,273 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,273 | ^ 2023-09-21T19:18:39,274 src/pgenlib/pgenlib.cpp:14638:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,274 14638 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,275 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,276 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,277 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,277 | ^ 2023-09-21T19:18:39,278 src/pgenlib/pgenlib.cpp:14653:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,278 14653 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,279 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,279 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,280 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,281 | ^ 2023-09-21T19:18:39,281 src/pgenlib/pgenlib.cpp:14655:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,282 14655 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,283 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,291 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal8(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal8*)’: 2023-09-21T19:18:39,292 src/pgenlib/pgenlib.cpp:14923:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,293 14923 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,294 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,297 src/pgenlib/pgenlib.cpp:14981:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,298 14981 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_subset_size); 2023-09-21T19:18:39,299 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,312 src/pgenlib/pgenlib.cpp:15224:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,313 15224 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_subset_size); 2023-09-21T19:18:39,313 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,324 src/pgenlib/pgenlib.cpp:15282:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,325 15282 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,325 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,351 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal32(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal32*)’: 2023-09-21T19:18:39,352 src/pgenlib/pgenlib.cpp:15981:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,352 15981 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,353 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,357 src/pgenlib/pgenlib.cpp:16039:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,357 16039 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_subset_size); 2023-09-21T19:18:39,358 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,370 src/pgenlib/pgenlib.cpp:16282:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,371 16282 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_subset_size); 2023-09-21T19:18:39,371 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,376 src/pgenlib/pgenlib.cpp:16340:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,376 16340 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,377 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,402 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal64(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal64*)’: 2023-09-21T19:18:39,403 src/pgenlib/pgenlib.cpp:17039:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,404 17039 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,404 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,408 src/pgenlib/pgenlib.cpp:17097:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,409 17097 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_subset_size); 2023-09-21T19:18:39,409 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,422 src/pgenlib/pgenlib.cpp:17340:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,422 17340 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_subset_size); 2023-09-21T19:18:39,423 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,428 src/pgenlib/pgenlib.cpp:17398:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,428 17398 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,429 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,471 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_21read_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:39,472 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,472 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,472 | ^ 2023-09-21T19:18:39,473 src/pgenlib/pgenlib.cpp:18274:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,473 18274 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,474 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,474 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,475 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,475 | ^ 2023-09-21T19:18:39,476 src/pgenlib/pgenlib.cpp:18276:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,476 18276 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,476 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,477 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,478 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,478 | ^ 2023-09-21T19:18:39,479 src/pgenlib/pgenlib.cpp:18278:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,479 18278 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,480 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,480 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,481 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,481 | ^ 2023-09-21T19:18:39,482 src/pgenlib/pgenlib.cpp:18280:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,483 18280 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,483 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,485 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,485 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,486 | ^ 2023-09-21T19:18:39,486 src/pgenlib/pgenlib.cpp:18293:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,487 18293 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,487 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,489 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,489 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,490 | ^ 2023-09-21T19:18:39,491 src/pgenlib/pgenlib.cpp:18303:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,491 18303 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,492 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,493 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,493 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,494 | ^ 2023-09-21T19:18:39,495 src/pgenlib/pgenlib.cpp:18310:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,495 18310 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,496 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,498 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,498 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,498 | ^ 2023-09-21T19:18:39,499 src/pgenlib/pgenlib.cpp:18325:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,499 18325 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,500 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,501 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,501 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,502 | ^ 2023-09-21T19:18:39,502 src/pgenlib/pgenlib.cpp:18327:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,503 18327 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,503 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,522 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_range(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_range*)’: 2023-09-21T19:18:39,523 src/pgenlib/pgenlib.cpp:18750:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,523 18750 | __pyx_t_9 = ((__pyx_t_14[0]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,524 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,528 src/pgenlib/pgenlib.cpp:18808:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,529 18808 | __pyx_t_9 = ((__pyx_t_14[1]) < (2 * __pyx_v_subset_size)); 2023-09-21T19:18:39,529 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,543 src/pgenlib/pgenlib.cpp:19047:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,543 19047 | __pyx_t_9 = ((__pyx_t_14[0]) < (2 * __pyx_v_subset_size)); 2023-09-21T19:18:39,544 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,549 src/pgenlib/pgenlib.cpp:19105:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,549 19105 | __pyx_t_9 = ((__pyx_t_14[1]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,550 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,575 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_23read_alleles_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:39,576 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,576 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,577 | ^ 2023-09-21T19:18:39,578 src/pgenlib/pgenlib.cpp:19771:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,578 19771 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,579 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,580 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,580 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,581 | ^ 2023-09-21T19:18:39,582 src/pgenlib/pgenlib.cpp:19773:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,582 19773 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,583 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,583 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,584 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,585 | ^ 2023-09-21T19:18:39,585 src/pgenlib/pgenlib.cpp:19775:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,586 19775 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,586 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,587 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,588 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,588 | ^ 2023-09-21T19:18:39,589 src/pgenlib/pgenlib.cpp:19777:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,590 19777 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,590 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,591 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,591 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,592 | ^ 2023-09-21T19:18:39,593 src/pgenlib/pgenlib.cpp:19790:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,593 19790 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,594 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,595 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,595 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,596 | ^ 2023-09-21T19:18:39,596 src/pgenlib/pgenlib.cpp:19800:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,597 19800 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,597 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,598 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,599 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,599 | ^ 2023-09-21T19:18:39,600 src/pgenlib/pgenlib.cpp:19810:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,600 19810 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,601 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,602 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,602 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,603 | ^ 2023-09-21T19:18:39,604 src/pgenlib/pgenlib.cpp:19825:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,604 19825 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,605 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,619 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_list(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_list*)’: 2023-09-21T19:18:39,620 src/pgenlib/pgenlib.cpp:20202:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,620 20202 | __pyx_t_12 = ((__pyx_t_11[0]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,621 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,625 src/pgenlib/pgenlib.cpp:20260:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,625 20260 | __pyx_t_12 = ((__pyx_t_11[1]) < (2 * __pyx_v_subset_size)); 2023-09-21T19:18:39,626 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,639 src/pgenlib/pgenlib.cpp:20503:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,640 20503 | __pyx_t_12 = ((__pyx_t_11[0]) < (2 * __pyx_v_subset_size)); 2023-09-21T19:18:39,640 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,645 src/pgenlib/pgenlib.cpp:20561:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,646 20561 | __pyx_t_12 = ((__pyx_t_11[1]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,646 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,674 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_25read_alleles_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:39,675 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,676 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,676 | ^ 2023-09-21T19:18:39,677 src/pgenlib/pgenlib.cpp:21268:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,677 21268 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,678 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,679 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,679 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,680 | ^ 2023-09-21T19:18:39,680 src/pgenlib/pgenlib.cpp:21270:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,681 21270 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,681 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,682 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,683 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,683 | ^ 2023-09-21T19:18:39,684 src/pgenlib/pgenlib.cpp:21272:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,684 21272 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,685 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,686 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,687 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,687 | ^ 2023-09-21T19:18:39,688 src/pgenlib/pgenlib.cpp:21285:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,688 21285 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,689 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,691 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,691 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,692 | ^ 2023-09-21T19:18:39,692 src/pgenlib/pgenlib.cpp:21295:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,693 21295 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,693 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,696 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,696 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,697 | ^ 2023-09-21T19:18:39,698 src/pgenlib/pgenlib.cpp:21310:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,698 21310 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,699 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,718 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent_range(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_and_phasepresent_range*)’: 2023-09-21T19:18:39,719 src/pgenlib/pgenlib.cpp:21723:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,720 21723 | __pyx_t_9 = ((__pyx_t_14[0]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,720 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,724 src/pgenlib/pgenlib.cpp:21781:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,725 21781 | __pyx_t_9 = ((__pyx_t_14[0]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,726 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,731 src/pgenlib/pgenlib.cpp:21839:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,731 21839 | __pyx_t_9 = ((__pyx_t_14[1]) < (2 * __pyx_v_subset_size)); 2023-09-21T19:18:39,732 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,736 src/pgenlib/pgenlib.cpp:21897:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,737 21897 | __pyx_t_9 = ((__pyx_t_14[1]) < __pyx_v_subset_size); 2023-09-21T19:18:39,737 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,763 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_27read_alleles_and_phasepresent_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:39,763 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,764 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,764 | ^ 2023-09-21T19:18:39,765 src/pgenlib/pgenlib.cpp:22189:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,766 22189 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,766 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,767 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,768 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,768 | ^ 2023-09-21T19:18:39,769 src/pgenlib/pgenlib.cpp:22191:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,769 22191 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,770 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,770 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,771 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,771 | ^ 2023-09-21T19:18:39,772 src/pgenlib/pgenlib.cpp:22193:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,772 22193 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,772 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,774 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,774 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,775 | ^ 2023-09-21T19:18:39,775 src/pgenlib/pgenlib.cpp:22195:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,776 22195 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,776 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,778 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,778 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,779 | ^ 2023-09-21T19:18:39,779 src/pgenlib/pgenlib.cpp:22197:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,780 22197 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,781 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,782 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,783 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,784 | ^ 2023-09-21T19:18:39,784 src/pgenlib/pgenlib.cpp:22210:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,785 22210 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,785 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,787 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,788 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,788 | ^ 2023-09-21T19:18:39,789 src/pgenlib/pgenlib.cpp:22220:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,790 22220 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,790 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,792 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,793 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,793 | ^ 2023-09-21T19:18:39,794 src/pgenlib/pgenlib.cpp:22230:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,795 22230 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,795 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,797 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,798 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,798 | ^ 2023-09-21T19:18:39,799 src/pgenlib/pgenlib.cpp:22240:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,799 22240 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,800 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,802 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,803 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,803 | ^ 2023-09-21T19:18:39,804 src/pgenlib/pgenlib.cpp:22255:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,804 22255 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,805 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,823 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent_list(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_and_phasepresent_list*)’: 2023-09-21T19:18:39,824 src/pgenlib/pgenlib.cpp:22632:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,824 22632 | __pyx_t_12 = ((__pyx_t_11[0]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,825 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,829 src/pgenlib/pgenlib.cpp:22690:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,830 22690 | __pyx_t_12 = ((__pyx_t_11[0]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:39,830 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,835 src/pgenlib/pgenlib.cpp:22748:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,836 22748 | __pyx_t_12 = ((__pyx_t_11[1]) < (2 * __pyx_v_subset_size)); 2023-09-21T19:18:39,837 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,841 src/pgenlib/pgenlib.cpp:22806:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:39,842 22806 | __pyx_t_12 = ((__pyx_t_11[1]) < __pyx_v_subset_size); 2023-09-21T19:18:39,843 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,867 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_29read_alleles_and_phasepresent_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:39,867 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,868 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,869 | ^ 2023-09-21T19:18:39,869 src/pgenlib/pgenlib.cpp:23157:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,870 23157 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,871 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,871 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,872 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,872 | ^ 2023-09-21T19:18:39,873 src/pgenlib/pgenlib.cpp:23159:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,874 23159 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,875 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,875 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,876 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,876 | ^ 2023-09-21T19:18:39,877 src/pgenlib/pgenlib.cpp:23161:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,877 23161 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,878 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,879 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,879 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,880 | ^ 2023-09-21T19:18:39,880 src/pgenlib/pgenlib.cpp:23163:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,881 23163 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,881 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,884 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,884 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,885 | ^ 2023-09-21T19:18:39,885 src/pgenlib/pgenlib.cpp:23176:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,886 23176 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,887 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,889 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,889 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,890 | ^ 2023-09-21T19:18:39,891 src/pgenlib/pgenlib.cpp:23186:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,891 23186 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,892 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,894 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,894 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,895 | ^ 2023-09-21T19:18:39,896 src/pgenlib/pgenlib.cpp:23196:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,896 23196 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,897 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,899 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,899 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,900 | ^ 2023-09-21T19:18:39,901 src/pgenlib/pgenlib.cpp:23211:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,901 23211 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,902 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,952 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_31read_dosages_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:39,952 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,953 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,954 | ^ 2023-09-21T19:18:39,954 src/pgenlib/pgenlib.cpp:24311:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,955 24311 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,955 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,956 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,956 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,957 | ^ 2023-09-21T19:18:39,957 src/pgenlib/pgenlib.cpp:24313:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,958 24313 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,958 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,960 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,960 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,961 | ^ 2023-09-21T19:18:39,961 src/pgenlib/pgenlib.cpp:24315:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,962 24315 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,962 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,963 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,964 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,965 | ^ 2023-09-21T19:18:39,965 src/pgenlib/pgenlib.cpp:24317:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,965 24317 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,966 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,967 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,968 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,969 | ^ 2023-09-21T19:18:39,969 src/pgenlib/pgenlib.cpp:24319:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,970 24319 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,970 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,972 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,973 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,974 | ^ 2023-09-21T19:18:39,974 src/pgenlib/pgenlib.cpp:24332:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,975 24332 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,975 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,977 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,978 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,979 | ^ 2023-09-21T19:18:39,979 src/pgenlib/pgenlib.cpp:24342:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,980 24342 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,980 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,982 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,983 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,983 | ^ 2023-09-21T19:18:39,984 src/pgenlib/pgenlib.cpp:24352:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,985 24352 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,985 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,987 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,987 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,988 | ^ 2023-09-21T19:18:39,989 src/pgenlib/pgenlib.cpp:24359:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,989 24359 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,990 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,992 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,993 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,993 | ^ 2023-09-21T19:18:39,994 src/pgenlib/pgenlib.cpp:24374:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,994 24374 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,995 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:39,996 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:39,997 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:39,998 | ^ 2023-09-21T19:18:39,998 src/pgenlib/pgenlib.cpp:24376:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:39,999 24376 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:39,999 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,009 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages_list_internal32(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages_list_internal32*)’: 2023-09-21T19:18:40,009 src/pgenlib/pgenlib.cpp:24646:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:40,010 24646 | __pyx_t_7 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:40,010 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,015 src/pgenlib/pgenlib.cpp:24704:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:40,015 24704 | __pyx_t_7 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2023-09-21T19:18:40,016 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,037 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages_list_internal64(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages_list_internal64*)’: 2023-09-21T19:18:40,038 src/pgenlib/pgenlib.cpp:25169:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:40,039 25169 | __pyx_t_7 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2023-09-21T19:18:40,039 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,043 src/pgenlib/pgenlib.cpp:25227:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-21T19:18:40,044 25227 | __pyx_t_7 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2023-09-21T19:18:40,045 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,081 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_33read_dosages_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:40,082 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,083 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,083 | ^ 2023-09-21T19:18:40,083 src/pgenlib/pgenlib.cpp:25821:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,084 25821 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,084 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,085 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,086 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,087 | ^ 2023-09-21T19:18:40,087 src/pgenlib/pgenlib.cpp:25823:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,088 25823 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,088 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,090 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,090 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,091 | ^ 2023-09-21T19:18:40,091 src/pgenlib/pgenlib.cpp:25825:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,092 25825 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,092 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,094 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,094 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,095 | ^ 2023-09-21T19:18:40,095 src/pgenlib/pgenlib.cpp:25827:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,096 25827 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,096 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,098 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,099 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,100 | ^ 2023-09-21T19:18:40,100 src/pgenlib/pgenlib.cpp:25840:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,101 25840 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,101 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,103 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,104 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,104 | ^ 2023-09-21T19:18:40,105 src/pgenlib/pgenlib.cpp:25850:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,106 25850 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,106 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,108 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,108 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,109 | ^ 2023-09-21T19:18:40,110 src/pgenlib/pgenlib.cpp:25857:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,110 25857 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,111 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,113 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,114 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,114 | ^ 2023-09-21T19:18:40,115 src/pgenlib/pgenlib.cpp:25872:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,115 25872 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,116 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,117 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,118 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,118 | ^ 2023-09-21T19:18:40,119 src/pgenlib/pgenlib.cpp:25874:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,119 25874 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,120 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,143 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_35count(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:40,144 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,144 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,145 | ^ 2023-09-21T19:18:40,145 src/pgenlib/pgenlib.cpp:26336:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,146 26336 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,146 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,147 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,148 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,148 | ^ 2023-09-21T19:18:40,149 src/pgenlib/pgenlib.cpp:26338:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,149 26338 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,150 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,151 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,152 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,153 | ^ 2023-09-21T19:18:40,153 src/pgenlib/pgenlib.cpp:26340:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,154 26340 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,154 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,156 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,157 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,157 | ^ 2023-09-21T19:18:40,158 src/pgenlib/pgenlib.cpp:26353:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,158 26353 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,159 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,161 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,162 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,162 | ^ 2023-09-21T19:18:40,163 src/pgenlib/pgenlib.cpp:26363:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,163 26363 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,164 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,166 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,167 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,168 | ^ 2023-09-21T19:18:40,168 src/pgenlib/pgenlib.cpp:26378:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,169 26378 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,169 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,185 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_37change_sample_subset(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:40,186 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,187 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,187 | ^ 2023-09-21T19:18:40,188 src/pgenlib/pgenlib.cpp:26696:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,188 26696 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,189 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,191 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,192 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,192 | ^ 2023-09-21T19:18:40,193 src/pgenlib/pgenlib.cpp:26716:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,194 26716 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,194 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,216 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_41__exit__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:40,217 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,218 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,218 | ^ 2023-09-21T19:18:40,219 src/pgenlib/pgenlib.cpp:27352:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,219 27352 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,220 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,221 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,221 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,222 | ^ 2023-09-21T19:18:40,222 src/pgenlib/pgenlib.cpp:27354:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,223 27354 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,223 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,225 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,226 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,226 | ^ 2023-09-21T19:18:40,227 src/pgenlib/pgenlib.cpp:27356:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,227 27356 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,228 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,230 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,231 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,231 | ^ 2023-09-21T19:18:40,232 src/pgenlib/pgenlib.cpp:27369:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,232 27369 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,233 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,235 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,236 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,237 | ^ 2023-09-21T19:18:40,237 src/pgenlib/pgenlib.cpp:27379:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,238 27379 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,238 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,249 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_47__setstate_cython__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:40,250 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,250 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,251 | ^ 2023-09-21T19:18:40,252 src/pgenlib/pgenlib.cpp:27787:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,252 27787 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,253 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,262 src/pgenlib/pgenlib.cpp: In function ‘int __pyx_pw_7pgenlib_10PgenWriter_1__cinit__(PyObject*, PyObject*, PyObject*)’: 2023-09-21T19:18:40,262 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,263 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,264 | ^ 2023-09-21T19:18:40,264 src/pgenlib/pgenlib.cpp:27989:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,265 27989 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,266 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,267 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,267 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,268 | ^ 2023-09-21T19:18:40,268 src/pgenlib/pgenlib.cpp:27991:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,269 27991 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,269 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,271 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,272 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,272 | ^ 2023-09-21T19:18:40,273 src/pgenlib/pgenlib.cpp:27993:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,274 27993 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,274 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,276 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,276 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,277 | ^ 2023-09-21T19:18:40,278 src/pgenlib/pgenlib.cpp:27995:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,278 27995 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,279 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,280 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,281 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,281 | ^ 2023-09-21T19:18:40,282 src/pgenlib/pgenlib.cpp:27997:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,282 27997 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,283 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,285 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,286 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,286 | ^ 2023-09-21T19:18:40,286 src/pgenlib/pgenlib.cpp:27999:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,287 27999 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,287 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,289 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,290 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,291 | ^ 2023-09-21T19:18:40,291 src/pgenlib/pgenlib.cpp:28001:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,292 28001 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,292 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,294 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,295 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,296 | ^ 2023-09-21T19:18:40,296 src/pgenlib/pgenlib.cpp:28003:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,297 28003 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,297 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,299 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,300 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,301 | ^ 2023-09-21T19:18:40,301 src/pgenlib/pgenlib.cpp:28016:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,302 28016 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,302 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,304 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,305 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,306 | ^ 2023-09-21T19:18:40,306 src/pgenlib/pgenlib.cpp:28026:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,307 28026 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,307 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,309 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,310 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,311 | ^ 2023-09-21T19:18:40,312 src/pgenlib/pgenlib.cpp:28036:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,312 28036 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,313 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,315 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,315 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,316 | ^ 2023-09-21T19:18:40,316 src/pgenlib/pgenlib.cpp:28046:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,317 28046 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,317 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,319 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,320 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,321 | ^ 2023-09-21T19:18:40,321 src/pgenlib/pgenlib.cpp:28053:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,322 28053 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,322 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,324 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,325 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,325 | ^ 2023-09-21T19:18:40,326 src/pgenlib/pgenlib.cpp:28060:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,327 28060 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,327 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,329 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,330 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,330 | ^ 2023-09-21T19:18:40,331 src/pgenlib/pgenlib.cpp:28067:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,332 28067 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,332 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,335 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,336 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,336 | ^ 2023-09-21T19:18:40,337 src/pgenlib/pgenlib.cpp:28082:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,337 28082 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,338 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,339 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,340 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,341 | ^ 2023-09-21T19:18:40,341 src/pgenlib/pgenlib.cpp:28084:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,342 28084 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,342 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,344 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,344 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,345 | ^ 2023-09-21T19:18:40,345 src/pgenlib/pgenlib.cpp:28086:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,346 28086 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,346 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,348 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,349 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,349 | ^ 2023-09-21T19:18:40,350 src/pgenlib/pgenlib.cpp:28088:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,350 28088 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,351 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,399 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_5append_biallelic(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:40,400 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,401 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,401 | ^ 2023-09-21T19:18:40,402 src/pgenlib/pgenlib.cpp:29321:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,403 29321 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,403 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,427 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_7append_alleles(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:40,428 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,428 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,429 | ^ 2023-09-21T19:18:40,429 src/pgenlib/pgenlib.cpp:29786:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,430 29786 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,431 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,431 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,432 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,433 | ^ 2023-09-21T19:18:40,434 src/pgenlib/pgenlib.cpp:29788:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,434 29788 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,435 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,437 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,438 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,438 | ^ 2023-09-21T19:18:40,439 src/pgenlib/pgenlib.cpp:29801:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,439 29801 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,440 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,443 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,443 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,444 | ^ 2023-09-21T19:18:40,445 src/pgenlib/pgenlib.cpp:29816:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,446 29816 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,446 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,472 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_9append_partially_phased(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:40,473 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,473 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,474 | ^ 2023-09-21T19:18:40,474 src/pgenlib/pgenlib.cpp:30275:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,475 30275 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,475 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,476 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,477 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,477 | ^ 2023-09-21T19:18:40,478 src/pgenlib/pgenlib.cpp:30277:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,478 30277 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,479 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,482 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,482 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,483 | ^ 2023-09-21T19:18:40,483 src/pgenlib/pgenlib.cpp:30290:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,484 30290 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,485 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,522 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_11append_dosages(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:40,523 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,523 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,524 | ^ 2023-09-21T19:18:40,524 src/pgenlib/pgenlib.cpp:31058:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,525 31058 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,526 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,545 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_13append_biallelic_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:40,546 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,546 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,547 | ^ 2023-09-21T19:18:40,548 src/pgenlib/pgenlib.cpp:31438:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,548 31438 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,549 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,576 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_15append_alleles_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:40,576 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,577 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,577 | ^ 2023-09-21T19:18:40,578 src/pgenlib/pgenlib.cpp:32010:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,579 32010 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,580 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,580 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,581 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,582 | ^ 2023-09-21T19:18:40,582 src/pgenlib/pgenlib.cpp:32012:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,583 32012 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,583 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,586 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,586 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,587 | ^ 2023-09-21T19:18:40,588 src/pgenlib/pgenlib.cpp:32025:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,588 32025 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,589 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,592 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,593 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,593 | ^ 2023-09-21T19:18:40,594 src/pgenlib/pgenlib.cpp:32040:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,594 32040 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,595 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,620 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_17append_partially_phased_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:40,621 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,622 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,622 | ^ 2023-09-21T19:18:40,623 src/pgenlib/pgenlib.cpp:32533:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,623 32533 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,624 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,625 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,626 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,626 | ^ 2023-09-21T19:18:40,627 src/pgenlib/pgenlib.cpp:32535:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,627 32535 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,628 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,631 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,632 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,632 | ^ 2023-09-21T19:18:40,633 src/pgenlib/pgenlib.cpp:32548:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,634 32548 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,634 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,675 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_19append_dosages_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:40,675 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,676 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,677 | ^ 2023-09-21T19:18:40,677 src/pgenlib/pgenlib.cpp:33380:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,678 33380 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,679 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,705 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_23__exit__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:40,706 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,706 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,707 | ^ 2023-09-21T19:18:40,707 src/pgenlib/pgenlib.cpp:33967:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,707 33967 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,708 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,710 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,711 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,711 | ^ 2023-09-21T19:18:40,712 src/pgenlib/pgenlib.cpp:33969:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,712 33969 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,713 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,715 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,716 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,716 | ^ 2023-09-21T19:18:40,717 src/pgenlib/pgenlib.cpp:33971:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,718 33971 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,718 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,721 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,722 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,723 | ^ 2023-09-21T19:18:40,723 src/pgenlib/pgenlib.cpp:33984:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,724 33984 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,725 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,727 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,728 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,729 | ^ 2023-09-21T19:18:40,729 src/pgenlib/pgenlib.cpp:33994:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,730 33994 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,730 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,742 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_29__setstate_cython__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-21T19:18:40,742 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,743 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,744 | ^ 2023-09-21T19:18:40,744 src/pgenlib/pgenlib.cpp:34366:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,745 34366 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,746 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,914 src/pgenlib/pgenlib.cpp: In function ‘const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context*, const char*)’: 2023-09-21T19:18:40,915 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,916 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,916 | ^ 2023-09-21T19:18:40,917 src/pgenlib/pgenlib.cpp:37835:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,917 37835 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,917 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,921 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,921 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,922 | ^ 2023-09-21T19:18:40,922 src/pgenlib/pgenlib.cpp:37848:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,923 37848 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,924 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,988 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __Pyx_PyInt_MultiplyObjC(PyObject*, PyObject*, long int, int, int)’: 2023-09-21T19:18:40,989 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,989 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,990 | ^ 2023-09-21T19:18:40,991 src/pgenlib/pgenlib.cpp:39092:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,991 39092 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,992 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:40,994 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:40,995 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:40,995 | ^ 2023-09-21T19:18:40,996 src/pgenlib/pgenlib.cpp:39103:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:40,997 39103 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:40,997 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:41,001 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:41,001 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:41,002 | ^ 2023-09-21T19:18:41,002 src/pgenlib/pgenlib.cpp:39114:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:41,003 39114 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:41,003 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:41,007 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:41,008 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:41,008 | ^ 2023-09-21T19:18:41,009 src/pgenlib/pgenlib.cpp:39125:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:41,010 39125 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:41,010 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:41,014 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:41,015 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:41,015 | ^ 2023-09-21T19:18:41,016 src/pgenlib/pgenlib.cpp:39136:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:41,017 39136 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:41,017 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:18:41,020 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-21T19:18:41,021 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-21T19:18:41,022 | ^ 2023-09-21T19:18:41,022 src/pgenlib/pgenlib.cpp:39147:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-21T19:18:41,023 39147 | CYTHON_FALLTHROUGH; 2023-09-21T19:18:41,023 | ^~~~~~~~~~~~~~~~~~ 2023-09-21T19:19:28,757 At global scope: 2023-09-21T19:19:28,758 cc1plus: note: unrecognized command-line option ‘-Wno-macro-redefined’ may have been intended to silence earlier diagnostics 2023-09-21T19:19:31,354 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/plink2/include/pgenlib_misc.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_misc.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-21T19:19:35,084 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/plink2/include/pgenlib_read.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_read.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-21T19:19:50,981 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/plink2/include/pgenlib_write.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_write.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-21T19:19:54,841 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/plink2/include/plink2_base.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_base.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-21T19:19:55,268 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/plink2/include/plink2_bits.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_bits.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-21T19:19:57,443 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/plink2/pgenlib_ffi_support.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/pgenlib_ffi_support.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-21T19:19:58,692 creating build/lib.linux-armv7l-cpython-311 2023-09-21T19:19:58,693 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/pgenlib/pgenlib.o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_misc.o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_read.o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_write.o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_base.o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_bits.o build/temp.linux-armv7l-cpython-311/src/plink2/pgenlib_ffi_support.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pgenlib.cpython-311-arm-linux-gnueabihf.so -std=c++98 2023-09-21T19:19:58,996 installing to build/bdist.linux-armv7l/wheel 2023-09-21T19:19:58,997 running install 2023-09-21T19:19:59,020 running install_lib 2023-09-21T19:19:59,028 creating build/bdist.linux-armv7l 2023-09-21T19:19:59,028 creating build/bdist.linux-armv7l/wheel 2023-09-21T19:19:59,030 copying build/lib.linux-armv7l-cpython-311/pgenlib.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-09-21T19:19:59,088 running install_egg_info 2023-09-21T19:19:59,101 running egg_info 2023-09-21T19:19:59,106 writing src/Pgenlib.egg-info/PKG-INFO 2023-09-21T19:19:59,108 writing dependency_links to src/Pgenlib.egg-info/dependency_links.txt 2023-09-21T19:19:59,110 writing top-level names to src/Pgenlib.egg-info/top_level.txt 2023-09-21T19:19:59,113 dependency /tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-21T19:19:59,114 dependency /tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-21T19:19:59,115 dependency /tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-21T19:19:59,115 dependency /tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-21T19:19:59,116 dependency /tmp/pip-build-env-k1r_wq_1/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-21T19:19:59,121 reading manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-09-21T19:19:59,124 reading manifest template 'MANIFEST.in' 2023-09-21T19:19:59,126 adding license file 'LICENSE' 2023-09-21T19:19:59,129 writing manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-09-21T19:19:59,131 Copying src/Pgenlib.egg-info to build/bdist.linux-armv7l/wheel/Pgenlib-0.81.3-py3.11.egg-info 2023-09-21T19:19:59,139 running install_scripts 2023-09-21T19:19:59,184 creating build/bdist.linux-armv7l/wheel/Pgenlib-0.81.3.dist-info/WHEEL 2023-09-21T19:19:59,187 creating '/tmp/pip-wheel-zftun507/.tmp-oec42_2i/Pgenlib-0.81.3-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-21T19:19:59,845 adding 'pgenlib.cpython-311-arm-linux-gnueabihf.so' 2023-09-21T19:19:59,875 adding 'Pgenlib-0.81.3.dist-info/LICENSE' 2023-09-21T19:19:59,877 adding 'Pgenlib-0.81.3.dist-info/METADATA' 2023-09-21T19:19:59,878 adding 'Pgenlib-0.81.3.dist-info/WHEEL' 2023-09-21T19:19:59,879 adding 'Pgenlib-0.81.3.dist-info/top_level.txt' 2023-09-21T19:19:59,881 adding 'Pgenlib-0.81.3.dist-info/RECORD' 2023-09-21T19:19:59,900 removing build/bdist.linux-armv7l/wheel 2023-09-21T19:20:00,068 Building wheel for pgenlib (pyproject.toml): finished with status 'done' 2023-09-21T19:20:00,103 Created wheel for pgenlib: filename=Pgenlib-0.81.3-cp311-cp311-linux_armv7l.whl size=1390542 sha256=d35941b198cb411716265233328d85e638faae97f31afeff3c50b56f287d8a88 2023-09-21T19:20:00,104 Stored in directory: /tmp/pip-ephem-wheel-cache-5lwlxn83/wheels/ce/ae/6a/7cc7db80568ec6785b1533abc07ad81c8b54483695c9c91f7b 2023-09-21T19:20:00,114 Successfully built pgenlib 2023-09-21T19:20:00,151 Removed build tracker: '/tmp/pip-build-tracker-b_r52lec'