2023-09-21T22:16:27,111 Created temporary directory: /tmp/pip-build-tracker-lvgw_3jv
2023-09-21T22:16:27,112 Initialized build tracking at /tmp/pip-build-tracker-lvgw_3jv
2023-09-21T22:16:27,113 Created build tracker: /tmp/pip-build-tracker-lvgw_3jv
2023-09-21T22:16:27,113 Entered build tracker: /tmp/pip-build-tracker-lvgw_3jv
2023-09-21T22:16:27,114 Created temporary directory: /tmp/pip-wheel-70hlxrwm
2023-09-21T22:16:27,117 Created temporary directory: /tmp/pip-ephem-wheel-cache-azlgqxdo
2023-09-21T22:16:27,140 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-21T22:16:27,143 2 location(s) to search for versions of glycopeptidepy:
2023-09-21T22:16:27,143 * https://pypi.org/simple/glycopeptidepy/
2023-09-21T22:16:27,143 * https://www.piwheels.org/simple/glycopeptidepy/
2023-09-21T22:16:27,144 Fetching project page and analyzing links: https://pypi.org/simple/glycopeptidepy/
2023-09-21T22:16:27,145 Getting page https://pypi.org/simple/glycopeptidepy/
2023-09-21T22:16:27,147 Found index url https://pypi.org/simple/
2023-09-21T22:16:27,290 Fetched page https://pypi.org/simple/glycopeptidepy/ as application/vnd.pypi.simple.v1+json
2023-09-21T22:16:27,318   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c5/11/eb274d11f4af75f9ac7af58e6ebdc583aea6b01dded7b435087941f16dab/glycopeptidepy-0.0.8-py2.7-win-amd64.egg (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,319   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/9e/b8/7b13b5d9a0514c91b0a75ec641e8ccf20fa82ce07baabeff879d3d77a123/glycopeptidepy-0.0.9-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,319   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/c4/0b/96db41cababc1eba081cc4c724a9020ab1ef7c91334ac8690ee53540d0e0/glycopeptidepy-0.0.9-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,320   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/0b/d4/f34abe10292754143bf1ecafe6eed20805461c373618212cf1c4ae77ad61/glycopeptidepy-0.0.9-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,321   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/05/7a/a0aa008ddc1fb6fd7e3eca6732e6f5bbcedab39aad7005e1fe59b88aa14c/glycopeptidepy-0.0.9-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,321   Found link https://files.pythonhosted.org/packages/e1/2c/c4fb4ba198007046e66a5cc18ee1db01e46e453feb59a4149f8c590e550c/glycopeptidepy-0.0.9.tar.gz (from https://pypi.org/simple/glycopeptidepy/), version: 0.0.9
2023-09-21T22:16:27,322   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/ec/53/842ed5b412b030004b831e6927250cdcb0bc1168dd3611ae00a134374b26/glycopeptidepy-0.0.10-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,323   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/98/f1/09c02877e80b6e451dd103c4738d3c26e7280029ceebc7a24ed1ec6b53fb/glycopeptidepy-0.0.10-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,323   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/95/7f/e8e0c6e49e826c913f1a9ab96e0712bf8ec5d43bdd8ec505764eb3ed158c/glycopeptidepy-0.0.10-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,324   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/30/e1/e33561730d84685829b63b88f22431268ec44f97977ea4bc82d4094bb53c/glycopeptidepy-0.0.10-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,324   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/b2/ec/6bc59c55fa5b269abbe05a23ccbe62aafdc775faed7f029c9716c80efd32/glycopeptidepy-0.0.10-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,325   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/b9/d1/5ff5cb8bed68162e4935cd6a0e08a1c6c6fd1d66c0b23b3f76c56a9f196c/glycopeptidepy-0.0.10-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,326   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/e1/26/f8ddb0b9733f46ca4bc5be43c414f92a42f75548b46a53f5d591775230f9/glycopeptidepy-0.0.10-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,326   Found link https://files.pythonhosted.org/packages/9b/6b/95d2dd54c15bb66c01d68633d329ca8fce2a879e93c75b99758d64e369a0/glycopeptidepy-0.0.10.tar.gz (from https://pypi.org/simple/glycopeptidepy/), version: 0.0.10
2023-09-21T22:16:27,327   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/fe/df/c84ddc0792f910d6fb51653200c47c2c0640a4536bc3c6640f17d6f1eebe/glycopeptidepy-0.0.11-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,327   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/9f/6f/2f39e13a3c1608105be10209c0d9531b6cb9ad1892940a34352d490dff4d/glycopeptidepy-0.0.11-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,328   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/89/9c/2cc74edae53140509a8f2a6f30e4d7f6ee1daab463e8671f50f49ce58b23/glycopeptidepy-0.0.11-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,328   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/d4/df/b4a6690634f65bf1da0aa278fabb6eb4ca53856d0dc1f288953345a4ff87/glycopeptidepy-0.0.11-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,329   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/dd/df/db6a0c4e47f942a7e739e6a9e7e9aa4c0934fccd8016677ceb4a1b044db5/glycopeptidepy-0.0.11-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,330   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/f4/9b/1d15adc403ef4f712ff1e74d56ad90b51e1bd95f64b5beffbe3037ba7876/glycopeptidepy-0.0.11-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,330   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/fc/4d/d88cefab11cf4d38f888190dd9b2b8baa3317a0626592a0bc880017e772f/glycopeptidepy-0.0.11-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,331   Found link https://files.pythonhosted.org/packages/d7/f9/c7f7e7925947e0f2bd174d5bf7c3a93ab818d3803197c752b96a740c5bcc/glycopeptidepy-0.0.11.tar.gz (from https://pypi.org/simple/glycopeptidepy/), version: 0.0.11
2023-09-21T22:16:27,332   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/45/49/ad5af8de14295e63934209845a78d584ba2a6b398a05e6b9daf9c3399984/glycopeptidepy-0.0.12-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,333   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/22/88/a6bba5af3ee627663e40f92665e5bc4081ba70af7da7747bfde059cc05ae/glycopeptidepy-0.0.12-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,334   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/b3/30/8c292fd979f741b66941d2465ae660031fa5b9d9ad58ec231f7c06a9715e/glycopeptidepy-0.0.12-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,334   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/a1/4f/b94e0b02ff32d2719a902060fd0c1065502ce924bcc9c8c252b15c55791b/glycopeptidepy-0.0.12-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,334   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/e5/6b/d2c15b41d7380dfe1549d0ee6ee7bbbd5cf34bbea7702b5349b871af6c60/glycopeptidepy-0.0.12-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,335   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/2c/af/134f748fd8db60ab32b2839b80bb367b921ec828eec5989ce30f557e0d49/glycopeptidepy-0.0.12-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,335   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/c1/9d/1a5873cc1d80b8f082f286137634b76341037db7370caf2f2672901be2df/glycopeptidepy-0.0.12-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,336   Found link https://files.pythonhosted.org/packages/2c/39/dc349656bb780f702d0d7cead9a14420bf8896b9aaf47d266bff3d0d3b20/glycopeptidepy-0.0.12.tar.gz (from https://pypi.org/simple/glycopeptidepy/), version: 0.0.12
2023-09-21T22:16:27,337   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/cb/3b/2188663ffb5404fb0d3f88a52c08b2260e6bcf35c25ca17a1b8f980c611d/glycopeptidepy-0.0.13-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,337   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/84/03/4b94b841e7920e618ec4eaebde248e63b7f03718d92b0f631d165876e3c9/glycopeptidepy-0.0.13-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,338   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/4d/b7/81638aba7c13b0899d02efb7467c380499e5fc25ce4a2f0c76ef14e13f2f/glycopeptidepy-0.0.13-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,338   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/4d/06/f58c0a8d13fb9a5a7ae5c3909296ae5b160549af8190eb5795b47c5c6e16/glycopeptidepy-0.0.13-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,339   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/b1/9c/cb0e3ab6e57a95633847956fb445852aaa35c35e39b5690699f8d958971f/glycopeptidepy-0.0.13-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,340   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/54/be/9bb68a1146ddc8041ec56ba8bd046a3a87bf1efe24019e7c33603c2045b4/glycopeptidepy-0.0.13-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,340   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/3b/ba/2235687d009b637ca4a07879476e61604bd4926ed81846089588d5c5e71b/glycopeptidepy-0.0.13-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,341   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/59/d8/4e07b4fd6da69338056734679d9f29b82e36421489437d3bfecf045beb64/glycopeptidepy-0.0.13-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,342   Found link https://files.pythonhosted.org/packages/62/d2/c2a541d3db2663bcc58e00b725036f06ec9e47e3294266e12960f640f835/glycopeptidepy-0.0.13.tar.gz (from https://pypi.org/simple/glycopeptidepy/), version: 0.0.13
2023-09-21T22:16:27,342   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/3f/59/0420f3f172f2377b6f0bc46cb95706e03a3ed5a38d35f27a47ca1ab38b0d/glycopeptidepy-0.0.14-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,343   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/15/ab/3b822a52a18d0187897787888fdc622c9de7cfd04ab81cf6120fece14b69/glycopeptidepy-0.0.14-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,343   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/52/5d/86f6bb97f4aecd3e731ff17f893f92b918781cd970b8b51617b2b85555ac/glycopeptidepy-0.0.14-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,344   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/d6/02/2bc7b83b513bf0068c0aefa77736713990892045c404e91cf22bc64f47ef/glycopeptidepy-0.0.14-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,344   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/fc/61/3f94619c9d735e5301a2382f367e4687e681de1bb08d9a4e4db0a34fb790/glycopeptidepy-0.0.14-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,345   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/2d/7f/a01c05b32818abea951f0fed1ea1f47cb2b916fc38be8a9079044a070aab/glycopeptidepy-0.0.14-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,346   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/93/7c/ef42f13b8f485a0920c61c8e5c16b78251eac30a97d3a8bd415c0dc83097/glycopeptidepy-0.0.14-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,346   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/98/72/04c775104bb27eb168ff8bc2fa51b5b9719791df67f44b5be6e55c907717/glycopeptidepy-0.0.14-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,347   Found link https://files.pythonhosted.org/packages/91/7f/28c2f58d986940fde5a0d002edf4e1bb21bfc61f899a12d1d49b0ce69eb7/glycopeptidepy-0.0.14.tar.gz (from https://pypi.org/simple/glycopeptidepy/), version: 0.0.14
2023-09-21T22:16:27,348   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/9a/45/4d5981031ebe59829dc0378c0b2a75cb6a0dbe1a11305e361f3df9b8a69f/glycopeptidepy-0.0.15-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,348   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/bc/c4/4926f1ad1af46ebb08098cb25d7b22fa4ead4dd6e855bf02fac3ed8799be/glycopeptidepy-0.0.15-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,349   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/43/e9/8b5490b64963d0abbd0147340bc651db0799f3376701f16e71ec556c2171/glycopeptidepy-0.0.15-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
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2023-09-21T22:16:27,361   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/f8/1c/b12bb318dc2c89ffc71d5c6764107ccd3f557dc334f1b783080439f4e83f/glycopeptidepy-0.0.17-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
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2023-09-21T22:16:27,362   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/68/a4/ff57d199aff60da77d8fa8525dcfa964ffac4129856055c661129ff7238e/glycopeptidepy-0.0.17-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
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2023-09-21T22:16:27,364   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/ed/8f/103ab3a91da89c00b6803ec8fffeca125c7f7b70c8c84a7f3a22e5dc9872/glycopeptidepy-0.0.17-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
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2023-09-21T22:16:27,366   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/f9/ba/51e8bb7cadc1591b84c573367aa736523a97f06274c6660b152a67abbf0c/glycopeptidepy-0.0.18-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
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2023-09-21T22:16:27,368   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/8e/52/cdcee74389424f17388d3e0106c17563c699287c5cc1b88e36625f8d8e3a/glycopeptidepy-0.0.18-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
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2023-09-21T22:16:27,369   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/39/58/8c758ac0d99c6e119d7600d98af63f4d1c49a5255fff2e1f6cdf06d161b4/glycopeptidepy-0.0.18-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
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2023-09-21T22:16:27,370   Found link https://files.pythonhosted.org/packages/3a/0c/64c494095199ad19f57f205f7784b87e240a5ab6f18dd0376aac8697a89a/glycopeptidepy-0.0.18.tar.gz (from https://pypi.org/simple/glycopeptidepy/), version: 0.0.18
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2023-09-21T22:16:27,373   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/d2/71/0ed0cf62f40f35ce2d716e7bbebc00bf101584bed6e7388ace972b0dca2b/glycopeptidepy-0.0.19-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
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2023-09-21T22:16:27,397   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/5c/13/4f5b37c9025121d267d75ca7be07f783ae4baf2dd3f2c6d2c940ede4d79c/glycopeptidepy-0.0.23-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
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2023-09-21T22:16:27,400   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/74/d4/1d0ddfc7de8f35ddadcacf172f6f8fef475bf334abca8bd6a59d4ec47a55/glycopeptidepy-0.0.23-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,401   Found link https://files.pythonhosted.org/packages/33/21/3f1e97b40d2c1cdbdfbe013202fde94876f7159e26f83de603c800beb97d/glycopeptidepy-0.0.23.tar.gz (from https://pypi.org/simple/glycopeptidepy/), version: 0.0.23
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2023-09-21T22:16:27,402   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/c6/a4/db29affbe1118a1f7f863343de1b3b6a7ebac9b4152cd165ad93ae0069ef/glycopeptidepy-0.0.24-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
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2023-09-21T22:16:27,404   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/7f/55/945d34f68a72780e5d5c6fca916f70865df688f0ddb3002b580065a491e9/glycopeptidepy-0.0.24-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,404   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/b4/53/d71900ba575ed4fd3ce0b4c5982f284fe69e4a78f34985b5a5d3ca8bc432/glycopeptidepy-0.0.24-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
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2023-09-21T22:16:27,405   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/a1/6e/ce9857256412badaabda449e6932942b883b434c136ea0329a1442ec316c/glycopeptidepy-0.0.24-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,406   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/50/13/4baa1621adb411ffca69c739e45e1902688ce841a80fdf0862c5cf33f1ee/glycopeptidepy-0.0.24-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,406   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/da/5e/a44874144a1e7cc75444b8ac9bcafe9ab5f5ef81815dd333a04c158433e9/glycopeptidepy-0.0.24-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,407   Found link https://files.pythonhosted.org/packages/84/ad/684ca86acc70eb60aebf852dffece7e8b27128b1a2df2b1814a19f1ac95b/glycopeptidepy-0.0.24.tar.gz (from https://pypi.org/simple/glycopeptidepy/), version: 0.0.24
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2023-09-21T22:16:27,408   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/df/e3/ff3f36bf531536d610af586eed9abeaaa721391b20d7af9581c497feb45b/glycopeptidepy-0.0.25-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,409   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/58/3a/a6430a85c669e0bd53276fb4610fe1a3bdab463ec5900cabde21bccc11b6/glycopeptidepy-0.0.25-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,410   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/9d/71/458df43e058712cdca6a4aefb35747ff0758a2f79a43d3e4e78f558268d2/glycopeptidepy-0.0.25-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,411   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/1d/b8/e19c4a00ba616977a5b803ab85959aebe41553996cda0dc3214e46b2b4cd/glycopeptidepy-0.0.25-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,411   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/84/0c/454ce1fbcb0160da2b1d51019470a48140300572480213192615a12cd1fb/glycopeptidepy-0.0.25-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,412   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/4f/96/922799d763ee95b48e2869c1b3bedb392a3dc912175513ef037c82dcfc39/glycopeptidepy-0.0.25-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,412   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/77/e3/8b67ba1a6aefe827423e7dddcbbcdcf853b018432f35ffbccca582141866/glycopeptidepy-0.0.25-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,413   Skipping link: No binaries permitted for glycopeptidepy: https://files.pythonhosted.org/packages/34/e0/369372e1bcd4bc7234b29e7e30c7cf5bc09f2ed41560d3ef6cbe4fcb8f67/glycopeptidepy-0.0.25-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,414   Found link https://files.pythonhosted.org/packages/69/68/e57bf05db279997551045e493a4a5ddcba61a01c95afe46732815035cb86/glycopeptidepy-0.0.25.tar.gz (from https://pypi.org/simple/glycopeptidepy/), version: 0.0.25
2023-09-21T22:16:27,414 Fetching project page and analyzing links: https://www.piwheels.org/simple/glycopeptidepy/
2023-09-21T22:16:27,415 Getting page https://www.piwheels.org/simple/glycopeptidepy/
2023-09-21T22:16:27,416 Found index url https://www.piwheels.org/simple/
2023-09-21T22:16:27,574 Fetched page https://www.piwheels.org/simple/glycopeptidepy/ as text/html
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2023-09-21T22:16:27,601   Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.25-cp39-cp39-linux_armv6l.whl#sha256=3eb3e969ff28c29c606ff2bbd609b7d4e22356c85c2f8c9bc485e10e0da45874 (from https://www.piwheels.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,602   Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.25-cp37-cp37m-linux_armv7l.whl#sha256=e0f1dc6fc6901524ccdc9298776a20b5a69634897138581e46c12b0ca9096278 (from https://www.piwheels.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,602   Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.25-cp37-cp37m-linux_armv6l.whl#sha256=e0f1dc6fc6901524ccdc9298776a20b5a69634897138581e46c12b0ca9096278 (from https://www.piwheels.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,603   Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.24-cp39-cp39-linux_armv7l.whl#sha256=2cfb05670bd69b51772cadb47b9669034ac0a934ed1b4565a4d92246147154f9 (from https://www.piwheels.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,604   Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.24-cp39-cp39-linux_armv6l.whl#sha256=2cfb05670bd69b51772cadb47b9669034ac0a934ed1b4565a4d92246147154f9 (from https://www.piwheels.org/simple/glycopeptidepy/)
2023-09-21T22:16:27,605   Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.24-cp37-cp37m-linux_armv7l.whl#sha256=d10d858431fa4364f90a2b9df118d9444e5e6aa98cda4334c1f7ea4be429e8e8 (from https://www.piwheels.org/simple/glycopeptidepy/)
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2023-09-21T22:16:27,606   Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.23-cp39-cp39-linux_armv6l.whl#sha256=67e0afedfc7209235ed5db24eb6fdf9258c11aed45cdeffe86d7a45025dbc2e6 (from https://www.piwheels.org/simple/glycopeptidepy/)
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2023-09-21T22:16:27,663 Skipping link: not a file: https://www.piwheels.org/simple/glycopeptidepy/
2023-09-21T22:16:27,664 Skipping link: not a file: https://pypi.org/simple/glycopeptidepy/
2023-09-21T22:16:27,684 Given no hashes to check 1 links for project 'glycopeptidepy': discarding no candidates
2023-09-21T22:16:27,703 Collecting glycopeptidepy==0.0.23
2023-09-21T22:16:27,705   Created temporary directory: /tmp/pip-unpack-0odh9lla
2023-09-21T22:16:28,497   Downloading glycopeptidepy-0.0.23.tar.gz (1.4 MB)
2023-09-21T22:16:29,360   Added glycopeptidepy==0.0.23 from https://files.pythonhosted.org/packages/33/21/3f1e97b40d2c1cdbdfbe013202fde94876f7159e26f83de603c800beb97d/glycopeptidepy-0.0.23.tar.gz to build tracker '/tmp/pip-build-tracker-lvgw_3jv'
2023-09-21T22:16:29,365   Created temporary directory: /tmp/pip-build-env-xqmnq1vi
2023-09-21T22:16:29,369   Installing build dependencies: started
2023-09-21T22:16:29,371   Running command pip subprocess to install build dependencies
2023-09-21T22:16:30,499   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-09-21T22:16:30,986   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-21T22:16:32,531   Collecting setuptools
2023-09-21T22:16:32,532     Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata
2023-09-21T22:16:32,537     Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB)
2023-09-21T22:16:32,744   Collecting wheel
2023-09-21T22:16:32,759     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-09-21T22:16:34,170   Collecting Cython
2023-09-21T22:16:34,171     Obtaining dependency information for Cython from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata
2023-09-21T22:16:34,177     Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB)
2023-09-21T22:16:34,495   Collecting glypy
2023-09-21T22:16:34,643     Using cached https://www.piwheels.org/simple/glypy/glypy-1.0.3-cp311-cp311-linux_armv7l.whl (1.7 MB)
2023-09-21T22:16:35,039   Collecting hjson (from glypy)
2023-09-21T22:16:35,061     Using cached https://www.piwheels.org/simple/hjson/hjson-3.1.0-py3-none-any.whl (54 kB)
2023-09-21T22:16:35,163   Collecting six (from glypy)
2023-09-21T22:16:35,177     Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB)
2023-09-21T22:16:35,209   Using cached setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-09-21T22:16:35,255   Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB)
2023-09-21T22:16:38,313   Installing collected packages: hjson, wheel, six, setuptools, Cython, glypy
2023-09-21T22:16:38,549     Creating /tmp/pip-build-env-xqmnq1vi/overlay/local/bin
2023-09-21T22:16:38,552     changing mode of /tmp/pip-build-env-xqmnq1vi/overlay/local/bin/hjson to 755
2023-09-21T22:16:38,790     changing mode of /tmp/pip-build-env-xqmnq1vi/overlay/local/bin/wheel to 755
2023-09-21T22:16:43,877     changing mode of /tmp/pip-build-env-xqmnq1vi/overlay/local/bin/cygdb to 755
2023-09-21T22:16:43,879     changing mode of /tmp/pip-build-env-xqmnq1vi/overlay/local/bin/cython to 755
2023-09-21T22:16:43,881     changing mode of /tmp/pip-build-env-xqmnq1vi/overlay/local/bin/cythonize to 755
2023-09-21T22:16:45,474   Successfully installed Cython-3.0.2 glypy-1.0.3 hjson-3.1.0 setuptools-68.2.2 six-1.16.0 wheel-0.41.2
2023-09-21T22:16:46,118   Installing build dependencies: finished with status 'done'
2023-09-21T22:16:46,132   Getting requirements to build wheel: started
2023-09-21T22:16:46,133   Running command Getting requirements to build wheel
2023-09-21T22:16:51,533   /tmp/pip-build-env-xqmnq1vi/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-70hlxrwm/glycopeptidepy_9c3bfbaf2a2a463abfb3c19590ede636/src/glycopeptidepy/_c/algorithm.pyx
2023-09-21T22:16:51,534     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-21T22:16:52,808   /tmp/pip-build-env-xqmnq1vi/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-70hlxrwm/glycopeptidepy_9c3bfbaf2a2a463abfb3c19590ede636/src/glycopeptidepy/_c/collectiontools.pxd
2023-09-21T22:16:52,808     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-21T22:16:54,621   /tmp/pip-build-env-xqmnq1vi/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-70hlxrwm/glycopeptidepy_9c3bfbaf2a2a463abfb3c19590ede636/src/glycopeptidepy/_c/count_table.pxd
2023-09-21T22:16:54,622     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-21T22:16:56,102   warning: src/glycopeptidepy/_c/count_table.pyx:15:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:16:56,120   warning: src/glycopeptidepy/_c/count_table.pyx:102:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:16:56,140   warning: src/glycopeptidepy/_c/count_table.pyx:184:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:16:56,143   warning: src/glycopeptidepy/_c/count_table.pyx:195:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:16:57,727   /tmp/pip-build-env-xqmnq1vi/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-70hlxrwm/glycopeptidepy_9c3bfbaf2a2a463abfb3c19590ede636/src/glycopeptidepy/_c/parser.pxd
2023-09-21T22:16:57,728     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-21T22:16:59,610   warning: src/glycopeptidepy/_c/parser.pyx:224:23: Unreachable code
2023-09-21T22:16:59,928   /tmp/pip-build-env-xqmnq1vi/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-70hlxrwm/glycopeptidepy_9c3bfbaf2a2a463abfb3c19590ede636/src/glycopeptidepy/_c/structure/base.pxd
2023-09-21T22:16:59,929     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-21T22:16:59,940   warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:16:59,940   warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:16:59,941   warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:16:59,942   warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:00,011   warning: src/glycopeptidepy/_c/structure/base.pyx:11:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:00,012   warning: src/glycopeptidepy/_c/structure/base.pyx:17:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:01,520   /tmp/pip-build-env-xqmnq1vi/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-70hlxrwm/glycopeptidepy_9c3bfbaf2a2a463abfb3c19590ede636/src/glycopeptidepy/_c/structure/constants.pxd
2023-09-21T22:17:01,521     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-21T22:17:01,722   /tmp/pip-build-env-xqmnq1vi/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-70hlxrwm/glycopeptidepy_9c3bfbaf2a2a463abfb3c19590ede636/src/glycopeptidepy/_c/structure/fragment.pxd
2023-09-21T22:17:01,723     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-21T22:17:03,342   warning: src/glycopeptidepy/_c/structure/fragment.pyx:41:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:03,343   warning: src/glycopeptidepy/_c/structure/fragment.pyx:42:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:03,749   warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:03,749   warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:03,750   warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:03,751   warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:05,482   /tmp/pip-build-env-xqmnq1vi/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-70hlxrwm/glycopeptidepy_9c3bfbaf2a2a463abfb3c19590ede636/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd
2023-09-21T22:17:05,483     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-21T22:17:07,151   warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:07,152   warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:07,152   warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:07,153   warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:07,479   /tmp/pip-build-env-xqmnq1vi/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-70hlxrwm/glycopeptidepy_9c3bfbaf2a2a463abfb3c19590ede636/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd
2023-09-21T22:17:07,479     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-21T22:17:09,081   warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:09,082   warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:09,082   warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:09,083   warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:11,549   /tmp/pip-build-env-xqmnq1vi/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-70hlxrwm/glycopeptidepy_9c3bfbaf2a2a463abfb3c19590ede636/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd
2023-09-21T22:17:11,549     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-21T22:17:13,075   warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:13,075   warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:13,076   warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:13,077   warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:17,803   /tmp/pip-build-env-xqmnq1vi/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-70hlxrwm/glycopeptidepy_9c3bfbaf2a2a463abfb3c19590ede636/src/glycopeptidepy/_c/structure/glycan.pxd
2023-09-21T22:17:17,804     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-21T22:17:17,889   warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:17,889   warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:17,890   warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:17,891   warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:19,743   /tmp/pip-build-env-xqmnq1vi/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-70hlxrwm/glycopeptidepy_9c3bfbaf2a2a463abfb3c19590ede636/src/glycopeptidepy/_c/structure/modification/modification.pxd
2023-09-21T22:17:19,744     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-21T22:17:19,762   warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:19,763   warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:19,763   warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:19,764   warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:20,148   /tmp/pip-build-env-xqmnq1vi/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-70hlxrwm/glycopeptidepy_9c3bfbaf2a2a463abfb3c19590ede636/src/glycopeptidepy/_c/structure/modification/rule.pxd
2023-09-21T22:17:20,149     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-21T22:17:20,207   warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:20,208   warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:20,209   warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:20,209   warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:20,913   /tmp/pip-build-env-xqmnq1vi/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-70hlxrwm/glycopeptidepy_9c3bfbaf2a2a463abfb3c19590ede636/src/glycopeptidepy/_c/structure/modification/source.pxd
2023-09-21T22:17:20,920     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-21T22:17:20,976   warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:20,976   warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:20,977   warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:20,978   warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:21,892   /tmp/pip-build-env-xqmnq1vi/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-70hlxrwm/glycopeptidepy_9c3bfbaf2a2a463abfb3c19590ede636/src/glycopeptidepy/_c/structure/sequence_methods.pxd
2023-09-21T22:17:21,893     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-21T22:17:21,951   warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:21,952   warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:21,953   warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:21,953   warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
2023-09-21T22:17:24,705   Compiling src/glycopeptidepy/_c/collectiontools.pyx because it changed.
2023-09-21T22:17:24,706   Compiling src/glycopeptidepy/_c/count_table.pyx because it changed.
2023-09-21T22:17:24,706   Compiling src/glycopeptidepy/_c/parser.pyx because it changed.
2023-09-21T22:17:24,707   Compiling src/glycopeptidepy/_c/structure/base.pyx because it changed.
2023-09-21T22:17:24,707   Compiling src/glycopeptidepy/_c/structure/fragment.pyx because it changed.
2023-09-21T22:17:24,707   Compiling src/glycopeptidepy/_c/structure/constants.pyx because it changed.
2023-09-21T22:17:24,708   Compiling src/glycopeptidepy/_c/structure/glycan.pyx because it changed.
2023-09-21T22:17:24,708   Compiling src/glycopeptidepy/_c/structure/sequence_methods.pyx because it changed.
2023-09-21T22:17:24,709   Compiling src/glycopeptidepy/_c/structure/modification/rule.pyx because it changed.
2023-09-21T22:17:24,709   Compiling src/glycopeptidepy/_c/structure/modification/modification.pyx because it changed.
2023-09-21T22:17:24,710   Compiling src/glycopeptidepy/_c/structure/modification/source.pyx because it changed.
2023-09-21T22:17:24,710   Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it changed.
2023-09-21T22:17:24,711   Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it changed.
2023-09-21T22:17:24,711   Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it changed.
2023-09-21T22:17:24,712   Compiling src/glycopeptidepy/_c/algorithm.pyx because it changed.
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2023-09-21T22:17:24,718   [11/15] Cythonizing src/glycopeptidepy/_c/structure/glycan.pyx
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2023-09-21T22:17:24,784   running egg_info
2023-09-21T22:17:24,790   writing src/glycopeptidepy.egg-info/PKG-INFO
2023-09-21T22:17:24,793   writing dependency_links to src/glycopeptidepy.egg-info/dependency_links.txt
2023-09-21T22:17:24,795   writing requirements to src/glycopeptidepy.egg-info/requires.txt
2023-09-21T22:17:24,796   writing top-level names to src/glycopeptidepy.egg-info/top_level.txt
2023-09-21T22:17:24,838   reading manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt'
2023-09-21T22:17:24,843   reading manifest template 'MANIFEST.in'
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2023-09-21T22:17:25,496   Getting requirements to build wheel: finished with status 'done'
2023-09-21T22:17:25,505   Created temporary directory: /tmp/pip-modern-metadata-uzhlqb99
2023-09-21T22:17:25,507   Preparing metadata (pyproject.toml): started
2023-09-21T22:17:25,509   Running command Preparing metadata (pyproject.toml)
2023-09-21T22:17:28,423   running dist_info
2023-09-21T22:17:28,442   creating /tmp/pip-modern-metadata-uzhlqb99/glycopeptidepy.egg-info
2023-09-21T22:17:28,446   writing /tmp/pip-modern-metadata-uzhlqb99/glycopeptidepy.egg-info/PKG-INFO
2023-09-21T22:17:28,450   writing dependency_links to /tmp/pip-modern-metadata-uzhlqb99/glycopeptidepy.egg-info/dependency_links.txt
2023-09-21T22:17:28,451   writing requirements to /tmp/pip-modern-metadata-uzhlqb99/glycopeptidepy.egg-info/requires.txt
2023-09-21T22:17:28,452   writing top-level names to /tmp/pip-modern-metadata-uzhlqb99/glycopeptidepy.egg-info/top_level.txt
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2023-09-21T22:17:28,483   reading manifest file '/tmp/pip-modern-metadata-uzhlqb99/glycopeptidepy.egg-info/SOURCES.txt'
2023-09-21T22:17:28,486   reading manifest template 'MANIFEST.in'
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2023-09-21T22:17:28,645   creating '/tmp/pip-modern-metadata-uzhlqb99/glycopeptidepy-0.0.23.dist-info'
2023-09-21T22:17:28,871   Preparing metadata (pyproject.toml): finished with status 'done'
2023-09-21T22:17:28,876   Source in /tmp/pip-wheel-70hlxrwm/glycopeptidepy_9c3bfbaf2a2a463abfb3c19590ede636 has version 0.0.23, which satisfies requirement glycopeptidepy==0.0.23 from https://files.pythonhosted.org/packages/33/21/3f1e97b40d2c1cdbdfbe013202fde94876f7159e26f83de603c800beb97d/glycopeptidepy-0.0.23.tar.gz
2023-09-21T22:17:28,877   Removed glycopeptidepy==0.0.23 from https://files.pythonhosted.org/packages/33/21/3f1e97b40d2c1cdbdfbe013202fde94876f7159e26f83de603c800beb97d/glycopeptidepy-0.0.23.tar.gz from build tracker '/tmp/pip-build-tracker-lvgw_3jv'
2023-09-21T22:17:28,880 Created temporary directory: /tmp/pip-unpack-1cmd0wdm
2023-09-21T22:17:28,881 Created temporary directory: /tmp/pip-unpack-4gfbzxq1
2023-09-21T22:17:28,890 Building wheels for collected packages: glycopeptidepy
2023-09-21T22:17:28,897   Created temporary directory: /tmp/pip-wheel-o7jpfn4v
2023-09-21T22:17:28,897   Destination directory: /tmp/pip-wheel-o7jpfn4v
2023-09-21T22:17:28,900   Building wheel for glycopeptidepy (pyproject.toml): started
2023-09-21T22:17:28,901   Running command Building wheel for glycopeptidepy (pyproject.toml)
2023-09-21T22:17:31,801   running bdist_wheel
2023-09-21T22:17:31,837   running build
2023-09-21T22:17:31,838   running build_py
2023-09-21T22:17:31,846   creating build
2023-09-21T22:17:31,847   creating build/lib.linux-armv7l-cpython-311
2023-09-21T22:17:31,848   creating build/lib.linux-armv7l-cpython-311/glycopeptidepy
2023-09-21T22:17:31,849   copying src/glycopeptidepy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy
2023-09-21T22:17:31,851   copying src/glycopeptidepy/version.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy
2023-09-21T22:17:31,853   copying src/glycopeptidepy/enzyme.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy
2023-09-21T22:17:31,855   copying src/glycopeptidepy/algorithm.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy
2023-09-21T22:17:31,858   creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/test
2023-09-21T22:17:31,859   copying src/glycopeptidepy/test/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test
2023-09-21T22:17:31,861   copying src/glycopeptidepy/test/sequence_test_suite.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test
2023-09-21T22:17:31,864   creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c
2023-09-21T22:17:31,865   copying src/glycopeptidepy/_c/cythonize.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c
2023-09-21T22:17:31,867   copying src/glycopeptidepy/_c/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c
2023-09-21T22:17:31,869   creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils
2023-09-21T22:17:31,870   copying src/glycopeptidepy/utils/collectiontools.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils
2023-09-21T22:17:31,872   copying src/glycopeptidepy/utils/sequence_tree.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils
2023-09-21T22:17:31,874   copying src/glycopeptidepy/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils
2023-09-21T22:17:31,876   copying src/glycopeptidepy/utils/iterators.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils
2023-09-21T22:17:31,878   copying src/glycopeptidepy/utils/intervals.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils
2023-09-21T22:17:31,880   copying src/glycopeptidepy/utils/memoize.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils
2023-09-21T22:17:31,883   creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/io
2023-09-21T22:17:31,883   copying src/glycopeptidepy/io/mzid.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io
2023-09-21T22:17:31,886   copying src/glycopeptidepy/io/uniprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io
2023-09-21T22:17:31,888   copying src/glycopeptidepy/io/annotation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io
2023-09-21T22:17:31,890   copying src/glycopeptidepy/io/fasta.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io
2023-09-21T22:17:31,893   copying src/glycopeptidepy/io/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io
2023-09-21T22:17:31,894   copying src/glycopeptidepy/io/utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io
2023-09-21T22:17:31,896   copying src/glycopeptidepy/io/nextprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io
2023-09-21T22:17:31,898   creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure
2023-09-21T22:17:31,899   copying src/glycopeptidepy/structure/glycan.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure
2023-09-21T22:17:31,902   copying src/glycopeptidepy/structure/fragment.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure
2023-09-21T22:17:31,904   copying src/glycopeptidepy/structure/terminal_group.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure
2023-09-21T22:17:31,906   copying src/glycopeptidepy/structure/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure
2023-09-21T22:17:31,908   copying src/glycopeptidepy/structure/composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure
2023-09-21T22:17:31,910   copying src/glycopeptidepy/structure/parser.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure
2023-09-21T22:17:31,912   copying src/glycopeptidepy/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure
2023-09-21T22:17:31,914   copying src/glycopeptidepy/structure/residue.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure
2023-09-21T22:17:31,916   copying src/glycopeptidepy/structure/constants.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure
2023-09-21T22:17:31,918   copying src/glycopeptidepy/structure/sequence_composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure
2023-09-21T22:17:31,920   creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure
2023-09-21T22:17:31,921   copying src/glycopeptidepy/_c/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure
2023-09-21T22:17:31,923   creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification
2023-09-21T22:17:31,924   copying src/glycopeptidepy/_c/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification
2023-09-21T22:17:31,927   creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:17:31,928   copying src/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:17:31,930   creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv
2023-09-21T22:17:31,931   copying src/glycopeptidepy/io/cv/uniprot_ptm.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv
2023-09-21T22:17:31,933   copying src/glycopeptidepy/io/cv/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv
2023-09-21T22:17:31,934   copying src/glycopeptidepy/io/cv/term.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv
2023-09-21T22:17:31,936   copying src/glycopeptidepy/io/cv/peff.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv
2023-09-21T22:17:31,939   creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence
2023-09-21T22:17:31,940   copying src/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence
2023-09-21T22:17:31,942   copying src/glycopeptidepy/structure/sequence/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence
2023-09-21T22:17:31,944   copying src/glycopeptidepy/structure/sequence/implementation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence
2023-09-21T22:17:31,947   copying src/glycopeptidepy/structure/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence
2023-09-21T22:17:31,948   copying src/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence
2023-09-21T22:17:31,951   creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification
2023-09-21T22:17:31,952   copying src/glycopeptidepy/structure/modification/source.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification
2023-09-21T22:17:31,954   copying src/glycopeptidepy/structure/modification/modification.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification
2023-09-21T22:17:31,956   copying src/glycopeptidepy/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification
2023-09-21T22:17:31,958   copying src/glycopeptidepy/structure/modification/target.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification
2023-09-21T22:17:31,961   copying src/glycopeptidepy/structure/modification/utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification
2023-09-21T22:17:31,962   copying src/glycopeptidepy/structure/modification/glycosylation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification
2023-09-21T22:17:31,965   copying src/glycopeptidepy/structure/modification/rule.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification
2023-09-21T22:17:31,967   copying src/glycopeptidepy/structure/modification/descriptors.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification
2023-09-21T22:17:31,969   creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy
2023-09-21T22:17:31,971   copying src/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy
2023-09-21T22:17:31,974   copying src/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy
2023-09-21T22:17:31,975   copying src/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy
2023-09-21T22:17:31,978   copying src/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy
2023-09-21T22:17:31,981   creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data
2023-09-21T22:17:31,982   copying src/glycopeptidepy/structure/modification/data/unimod.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data
2023-09-21T22:17:31,985   copying src/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data
2023-09-21T22:17:31,986   copying src/glycopeptidepy/structure/modification/data/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data
2023-09-21T22:17:31,988   running egg_info
2023-09-21T22:17:31,993   writing src/glycopeptidepy.egg-info/PKG-INFO
2023-09-21T22:17:31,996   writing dependency_links to src/glycopeptidepy.egg-info/dependency_links.txt
2023-09-21T22:17:31,997   writing requirements to src/glycopeptidepy.egg-info/requires.txt
2023-09-21T22:17:31,998   writing top-level names to src/glycopeptidepy.egg-info/top_level.txt
2023-09-21T22:17:32,017   reading manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt'
2023-09-21T22:17:32,021   reading manifest template 'MANIFEST.in'
2023-09-21T22:17:32,190   writing manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt'
2023-09-21T22:17:32,197   copying src/glycopeptidepy/_c/algorithm.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c
2023-09-21T22:17:32,210   copying src/glycopeptidepy/_c/algorithm.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c
2023-09-21T22:17:32,212   copying src/glycopeptidepy/_c/collectiontools.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c
2023-09-21T22:17:32,221   copying src/glycopeptidepy/_c/collectiontools.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c
2023-09-21T22:17:32,223   copying src/glycopeptidepy/_c/collectiontools.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c
2023-09-21T22:17:32,224   copying src/glycopeptidepy/_c/compat.h -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c
2023-09-21T22:17:32,227   copying src/glycopeptidepy/_c/compat.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c
2023-09-21T22:17:32,229   copying src/glycopeptidepy/_c/count_table.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c
2023-09-21T22:17:32,245   copying src/glycopeptidepy/_c/count_table.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c
2023-09-21T22:17:32,246   copying src/glycopeptidepy/_c/count_table.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c
2023-09-21T22:17:32,249   copying src/glycopeptidepy/_c/parser.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c
2023-09-21T22:17:32,260   copying src/glycopeptidepy/_c/parser.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c
2023-09-21T22:17:32,262   copying src/glycopeptidepy/_c/parser.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c
2023-09-21T22:17:32,265   copying src/glycopeptidepy/_c/structure/base.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure
2023-09-21T22:17:32,284   copying src/glycopeptidepy/_c/structure/base.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure
2023-09-21T22:17:32,286   copying src/glycopeptidepy/_c/structure/base.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure
2023-09-21T22:17:32,289   copying src/glycopeptidepy/_c/structure/constants.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure
2023-09-21T22:17:32,299   copying src/glycopeptidepy/_c/structure/constants.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure
2023-09-21T22:17:32,302   copying src/glycopeptidepy/_c/structure/constants.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure
2023-09-21T22:17:32,304   copying src/glycopeptidepy/_c/structure/fragment.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure
2023-09-21T22:17:32,334   copying src/glycopeptidepy/_c/structure/fragment.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure
2023-09-21T22:17:32,336   copying src/glycopeptidepy/_c/structure/fragment.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure
2023-09-21T22:17:32,339   copying src/glycopeptidepy/_c/structure/glycan.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure
2023-09-21T22:17:32,358   copying src/glycopeptidepy/_c/structure/glycan.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure
2023-09-21T22:17:32,361   copying src/glycopeptidepy/_c/structure/glycan.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure
2023-09-21T22:17:32,363   copying src/glycopeptidepy/_c/structure/sequence_methods.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure
2023-09-21T22:17:32,382   copying src/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure
2023-09-21T22:17:32,384   copying src/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure
2023-09-21T22:17:32,387   copying src/glycopeptidepy/_c/structure/modification/modification.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification
2023-09-21T22:17:32,399   copying src/glycopeptidepy/_c/structure/modification/modification.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification
2023-09-21T22:17:32,401   copying src/glycopeptidepy/_c/structure/modification/modification.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification
2023-09-21T22:17:32,403   copying src/glycopeptidepy/_c/structure/modification/rule.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification
2023-09-21T22:17:32,425   copying src/glycopeptidepy/_c/structure/modification/rule.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification
2023-09-21T22:17:32,428   copying src/glycopeptidepy/_c/structure/modification/rule.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification
2023-09-21T22:17:32,430   copying src/glycopeptidepy/_c/structure/modification/source.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification
2023-09-21T22:17:32,443   copying src/glycopeptidepy/_c/structure/modification/source.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification
2023-09-21T22:17:32,445   copying src/glycopeptidepy/_c/structure/modification/source.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification
2023-09-21T22:17:32,447   copying src/glycopeptidepy/_c/structure/modification/target.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification
2023-09-21T22:17:32,449   copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:17:32,459   copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:17:32,461   copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:17:32,463   copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:17:32,489   copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:17:32,491   copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:17:32,495   copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:17:32,532   copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:17:32,534   copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:17:32,537   copying src/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data
2023-09-21T22:17:32,539   copying src/glycopeptidepy/structure/modification/data/unimod.json -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data
2023-09-21T22:17:32,575   running build_ext
2023-09-21T22:17:32,581   building 'glycopeptidepy._c.collectiontools' extension
2023-09-21T22:17:32,582   creating build/temp.linux-armv7l-cpython-311
2023-09-21T22:17:32,583   creating build/temp.linux-armv7l-cpython-311/src
2023-09-21T22:17:32,583   creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy
2023-09-21T22:17:32,584   creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c
2023-09-21T22:17:32,585   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/collectiontools.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/collectiontools.o
2023-09-21T22:17:39,370   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/collectiontools.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so
2023-09-21T22:17:39,491   building 'glycopeptidepy._c.count_table' extension
2023-09-21T22:17:39,492   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/count_table.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/count_table.o
2023-09-21T22:17:41,293   src/glycopeptidepy/_c/count_table.c:4463:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist’ defined but not used [-Wunused-function]
2023-09-21T22:17:41,294    4463 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist(size_t __pyx_v_n, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_inst) {
2023-09-21T22:17:41,295         |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-21T22:17:41,298   src/glycopeptidepy/_c/count_table.c:4192:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get’ defined but not used [-Wunused-function]
2023-09-21T22:17:41,298    4192 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) {
2023-09-21T22:17:41,299         |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-21T22:17:41,301   src/glycopeptidepy/_c/count_table.c:3950:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put’ defined but not used [-Wunused-function]
2023-09-21T22:17:41,302    3950 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) {
2023-09-21T22:17:41,303         |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-21T22:17:56,746   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/count_table.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so
2023-09-21T22:17:56,900   building 'glycopeptidepy._c.parser' extension
2023-09-21T22:17:56,901   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/parser.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/parser.o
2023-09-21T22:17:57,265   In file included from src/glycopeptidepy/_c/parser.c:1187:
2023-09-21T22:17:57,266   src/glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined
2023-09-21T22:17:57,266      38 | #define PyInt_Check PyLong_Check
2023-09-21T22:17:57,267         |
2023-09-21T22:17:57,267   src/glycopeptidepy/_c/parser.c:1085: note: this is the location of the previous definition
2023-09-21T22:17:57,268    1085 |   #define PyInt_Check(op)              PyLong_Check(op)
2023-09-21T22:17:57,268         |
2023-09-21T22:17:57,269   src/glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined
2023-09-21T22:17:57,269      39 | #define PyInt_CheckExact PyLong_CheckExact
2023-09-21T22:17:57,270         |
2023-09-21T22:17:57,270   src/glycopeptidepy/_c/parser.c:1086: note: this is the location of the previous definition
2023-09-21T22:17:57,271    1086 |   #define PyInt_CheckExact(op)         PyLong_CheckExact(op)
2023-09-21T22:17:57,272         |
2023-09-21T22:17:57,284   src/glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser__cstring_sequence_tokenizer’:
2023-09-21T22:17:57,287   src/glycopeptidepy/_c/parser.c:3603:21: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2023-09-21T22:17:57,288    3603 |   __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence);
2023-09-21T22:17:57,288         |                     ^
2023-09-21T22:17:57,357   src/glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser_parse_simple’:
2023-09-21T22:17:57,363   src/glycopeptidepy/_c/parser.c:7712:23: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2023-09-21T22:17:57,364    7712 |     __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence);
2023-09-21T22:17:57,365         |                       ^
2023-09-21T22:18:04,792   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/parser.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so
2023-09-21T22:18:04,902   building 'glycopeptidepy._c.structure.base' extension
2023-09-21T22:18:04,903   creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure
2023-09-21T22:18:04,903   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/base.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/base.o
2023-09-21T22:18:26,213   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/base.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so
2023-09-21T22:18:26,567   building 'glycopeptidepy._c.structure.fragment' extension
2023-09-21T22:18:26,568   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/fragment.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragment.o
2023-09-21T22:18:26,941   In file included from src/glycopeptidepy/_c/structure/fragment.c:1188:
2023-09-21T22:18:26,942   src/glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined
2023-09-21T22:18:26,943      38 | #define PyInt_Check PyLong_Check
2023-09-21T22:18:26,943         |
2023-09-21T22:18:26,944   src/glycopeptidepy/_c/structure/fragment.c:1085: note: this is the location of the previous definition
2023-09-21T22:18:26,945    1085 |   #define PyInt_Check(op)              PyLong_Check(op)
2023-09-21T22:18:26,945         |
2023-09-21T22:18:26,946   src/glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined
2023-09-21T22:18:26,946      39 | #define PyInt_CheckExact PyLong_CheckExact
2023-09-21T22:18:26,947         |
2023-09-21T22:18:26,947   src/glycopeptidepy/_c/structure/fragment.c:1086: note: this is the location of the previous definition
2023-09-21T22:18:26,948    1086 |   #define PyInt_CheckExact(op)         PyLong_CheckExact(op)
2023-09-21T22:18:26,948         |
2023-09-21T22:18:26,987   src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_init_str_ints’:
2023-09-21T22:18:26,992   src/glycopeptidepy/_c/structure/fragment.c:5798:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2023-09-21T22:18:26,993    5798 |     __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z));
2023-09-21T22:18:26,993         |                   ^
2023-09-21T22:18:26,995   src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_get_str_int’:
2023-09-21T22:18:27,000   src/glycopeptidepy/_c/structure/fragment.c:6027:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2023-09-21T22:18:27,001    6027 |   __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z));
2023-09-21T22:18:27,001         |                 ^
2023-09-21T22:18:27,240   src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_15PeptideFragment_get_fragment_name’:
2023-09-21T22:18:27,253   src/glycopeptidepy/_c/structure/fragment.c:14261:22: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2023-09-21T22:18:27,301   14261 |   __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref));
2023-09-21T22:18:27,301         |                      ^
2023-09-21T22:18:27,302   src/glycopeptidepy/_c/structure/fragment.c:14576:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2023-09-21T22:18:27,303   14576 |         __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref));
2023-09-21T22:18:27,303         |                            ^
2023-09-21T22:18:27,304   src/glycopeptidepy/_c/structure/fragment.c:14749:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2023-09-21T22:18:27,305   14749 |         __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref));
2023-09-21T22:18:27,306         |                            ^
2023-09-21T22:18:27,308   src/glycopeptidepy/_c/structure/fragment.c:14926:24: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2023-09-21T22:18:27,309   14926 |     __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref));
2023-09-21T22:18:27,310         |                        ^
2023-09-21T22:19:04,282   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragment.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so
2023-09-21T22:19:04,437   building 'glycopeptidepy._c.structure.constants' extension
2023-09-21T22:19:04,438   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/constants.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/constants.o
2023-09-21T22:19:10,466   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/constants.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so
2023-09-21T22:19:10,572   building 'glycopeptidepy._c.structure.glycan' extension
2023-09-21T22:19:10,573   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/glycan.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/glycan.o
2023-09-21T22:19:33,378   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/glycan.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so
2023-09-21T22:19:33,519   building 'glycopeptidepy._c.structure.sequence_methods' extension
2023-09-21T22:19:33,520   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/sequence_methods.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/sequence_methods.o
2023-09-21T22:19:34,180   src/glycopeptidepy/_c/structure/sequence_methods.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_16sequence_methods_add_modification’:
2023-09-21T22:19:34,194   src/glycopeptidepy/_c/structure/sequence_methods.c:14877:36: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-21T22:19:34,195   14877 |     __pyx_t_7 = (__pyx_v_position_ >= __pyx_t_8);
2023-09-21T22:19:34,196         |                                    ^~
2023-09-21T22:19:54,412   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/sequence_methods.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so
2023-09-21T22:19:54,537   building 'glycopeptidepy._c.structure.modification.rule' extension
2023-09-21T22:19:54,538   creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification
2023-09-21T22:19:54,539   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/modification/rule.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/rule.o
2023-09-21T22:20:06,958   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/rule.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so
2023-09-21T22:20:07,077   building 'glycopeptidepy._c.structure.modification.modification' extension
2023-09-21T22:20:07,077   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/modification/modification.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/modification.o
2023-09-21T22:20:15,070   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/modification.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so
2023-09-21T22:20:15,181   building 'glycopeptidepy._c.structure.modification.source' extension
2023-09-21T22:20:15,182   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/modification/source.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/source.o
2023-09-21T22:20:23,167   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/source.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so
2023-09-21T22:20:23,276   building 'glycopeptidepy._c.structure.fragmentation_strategy.base' extension
2023-09-21T22:20:23,277   creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:20:23,277   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.o
2023-09-21T22:20:32,312   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so
2023-09-21T22:20:32,423   building 'glycopeptidepy._c.structure.fragmentation_strategy.peptide' extension
2023-09-21T22:20:32,424   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o
2023-09-21T22:21:23,734   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so
2023-09-21T22:21:23,912   building 'glycopeptidepy._c.structure.fragmentation_strategy.glycan' extension
2023-09-21T22:21:23,912   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o
2023-09-21T22:21:24,549   src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_fucosylate_extended’:
2023-09-21T22:21:24,561   src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:12967:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare]
2023-09-21T22:21:24,561   12967 |     for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-09-21T22:21:24,562         |                                   ^
2023-09-21T22:21:24,573   src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:12984:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare]
2023-09-21T22:21:24,574   12984 |   for (__pyx_t_9 = 1; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-09-21T22:21:24,575         |                                 ^
2023-09-21T22:21:24,711   src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_n_glycan_stub_fragments’:
2023-09-21T22:21:24,727   src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17287:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-21T22:21:24,727   17287 |   for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) {
2023-09-21T22:21:24,728         |                                   ^
2023-09-21T22:21:24,748   src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_o_glycan_stub_fragments’:
2023-09-21T22:21:24,765   src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17970:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2023-09-21T22:21:24,765   17970 |   for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_15; __pyx_t_9+=1) {
2023-09-21T22:21:24,766         |                                 ^
2023-09-21T22:21:24,823   src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_gag_linker_stub_fragments’:
2023-09-21T22:21:24,841   src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:19888:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2023-09-21T22:21:24,842   19888 |   for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_15; __pyx_t_9+=1) {
2023-09-21T22:21:24,843         |                                 ^
2023-09-21T22:21:24,895   src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_mixed_stub_fragments’:
2023-09-21T22:21:24,915   src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:21226:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-21T22:21:24,915   21226 |   for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) {
2023-09-21T22:21:24,916         |                                   ^
2023-09-21T22:21:24,936   src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:21285:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-21T22:21:24,936   21285 |   for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) {
2023-09-21T22:21:24,937         |                                   ^
2023-09-21T22:21:24,957   src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:21344:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-21T22:21:24,958   21344 |   for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) {
2023-09-21T22:21:24,958         |                                   ^
2023-09-21T22:21:57,591   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so
2023-09-21T22:21:57,739   building 'glycopeptidepy._c.algorithm' extension
2023-09-21T22:21:57,740   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/algorithm.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/algorithm.o
2023-09-21T22:22:12,036   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/algorithm.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so
2023-09-21T22:22:12,172   installing to build/bdist.linux-armv7l/wheel
2023-09-21T22:22:12,172   running install
2023-09-21T22:22:12,199   running install_lib
2023-09-21T22:22:12,207   creating build/bdist.linux-armv7l
2023-09-21T22:22:12,207   creating build/bdist.linux-armv7l/wheel
2023-09-21T22:22:12,209   creating build/bdist.linux-armv7l/wheel/glycopeptidepy
2023-09-21T22:22:12,211   creating build/bdist.linux-armv7l/wheel/glycopeptidepy/test
2023-09-21T22:22:12,212   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test
2023-09-21T22:22:12,214   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/sequence_test_suite.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test
2023-09-21T22:22:12,218   creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,219   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,221   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,235   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,245   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/compat.h -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,247   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,249   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,263   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/cythonize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,265   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,279   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,281   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,284   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,285   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,287   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,289   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/compat.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,291   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,299   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,301   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,310   creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,311   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,319   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,339   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,341   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,344   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,383   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,401   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,404   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,406   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,408   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,435   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,438   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,445   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,449   creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification
2023-09-21T22:22:12,451   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification
2023-09-21T22:22:12,459   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification
2023-09-21T22:22:12,461   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/target.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification
2023-09-21T22:22:12,464   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification
2023-09-21T22:22:12,473   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification
2023-09-21T22:22:12,487   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification
2023-09-21T22:22:12,489   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification
2023-09-21T22:22:12,492   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification
2023-09-21T22:22:12,494   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification
2023-09-21T22:22:12,496   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification
2023-09-21T22:22:12,511   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification
2023-09-21T22:22:12,514   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification
2023-09-21T22:22:12,524   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification
2023-09-21T22:22:12,527   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification
2023-09-21T22:22:12,539   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,556   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,559   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,562   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,564   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,586   creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:22:12,587   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:22:12,589   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:22:12,615   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:22:12,616   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:22:12,628   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:22:12,630   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:22:12,633   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:22:12,674   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:22:12,677   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:22:12,679   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:22:12,715   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:22:12,753   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:22:12,756   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy
2023-09-21T22:22:12,767   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,787   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,789   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure
2023-09-21T22:22:12,807   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,820   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c
2023-09-21T22:22:12,837   creating build/bdist.linux-armv7l/wheel/glycopeptidepy/utils
2023-09-21T22:22:12,839   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/collectiontools.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils
2023-09-21T22:22:12,841   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/sequence_tree.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils
2023-09-21T22:22:12,843   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils
2023-09-21T22:22:12,845   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/iterators.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils
2023-09-21T22:22:12,847   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils
2023-09-21T22:22:12,849   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/memoize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils
2023-09-21T22:22:12,851   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy
2023-09-21T22:22:12,853   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/version.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy
2023-09-21T22:22:12,855   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy
2023-09-21T22:22:12,857   creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io
2023-09-21T22:22:12,859   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/mzid.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io
2023-09-21T22:22:12,861   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io
2023-09-21T22:22:12,869   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/annotation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io
2023-09-21T22:22:12,871   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io
2023-09-21T22:22:12,874   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io
2023-09-21T22:22:12,875   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io
2023-09-21T22:22:12,878   creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv
2023-09-21T22:22:12,879   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv
2023-09-21T22:22:12,881   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv
2023-09-21T22:22:12,882   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/term.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv
2023-09-21T22:22:12,884   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/peff.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv
2023-09-21T22:22:12,886   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/nextprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io
2023-09-21T22:22:12,889   creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure
2023-09-21T22:22:12,890   creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence
2023-09-21T22:22:12,891   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence
2023-09-21T22:22:12,893   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence
2023-09-21T22:22:12,896   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/implementation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence
2023-09-21T22:22:12,898   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence
2023-09-21T22:22:12,900   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence
2023-09-21T22:22:12,902   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure
2023-09-21T22:22:12,904   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure
2023-09-21T22:22:12,907   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/terminal_group.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure
2023-09-21T22:22:12,909   creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification
2023-09-21T22:22:12,910   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/source.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification
2023-09-21T22:22:12,913   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification
2023-09-21T22:22:12,915   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification
2023-09-21T22:22:12,917   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/target.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification
2023-09-21T22:22:12,919   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification
2023-09-21T22:22:12,921   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/glycosylation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification
2023-09-21T22:22:12,923   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/rule.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification
2023-09-21T22:22:12,927   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/descriptors.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification
2023-09-21T22:22:12,929   creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data
2023-09-21T22:22:12,930   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data
2023-09-21T22:22:12,932   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data
2023-09-21T22:22:12,935   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data
2023-09-21T22:22:12,936   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data
2023-09-21T22:22:12,938   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/unimod.json -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data
2023-09-21T22:22:12,966   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure
2023-09-21T22:22:12,968   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure
2023-09-21T22:22:12,970   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/parser.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure
2023-09-21T22:22:12,972   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure
2023-09-21T22:22:12,974   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure
2023-09-21T22:22:12,977   creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy
2023-09-21T22:22:12,978   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy
2023-09-21T22:22:12,981   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy
2023-09-21T22:22:12,983   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy
2023-09-21T22:22:12,985   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy
2023-09-21T22:22:12,987   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/constants.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure
2023-09-21T22:22:12,989   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure
2023-09-21T22:22:12,992   copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/algorithm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy
2023-09-21T22:22:12,994   running install_egg_info
2023-09-21T22:22:13,007   Copying src/glycopeptidepy.egg-info to build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.23-py3.11.egg-info
2023-09-21T22:22:13,020   running install_scripts
2023-09-21T22:22:13,067   creating build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.23.dist-info/WHEEL
2023-09-21T22:22:13,070   creating '/tmp/pip-wheel-o7jpfn4v/.tmp-dr7vxsbw/glycopeptidepy-0.0.23-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-21T22:22:13,072   adding 'glycopeptidepy/__init__.py'
2023-09-21T22:22:13,075   adding 'glycopeptidepy/algorithm.py'
2023-09-21T22:22:13,077   adding 'glycopeptidepy/enzyme.py'
2023-09-21T22:22:13,078   adding 'glycopeptidepy/version.py'
2023-09-21T22:22:13,080   adding 'glycopeptidepy/_c/__init__.py'
2023-09-21T22:22:13,136   adding 'glycopeptidepy/_c/algorithm.c'
2023-09-21T22:22:13,285   adding 'glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so'
2023-09-21T22:22:13,291   adding 'glycopeptidepy/_c/algorithm.pyx'
2023-09-21T22:22:13,328   adding 'glycopeptidepy/_c/collectiontools.c'
2023-09-21T22:22:13,402   adding 'glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so'
2023-09-21T22:22:13,406   adding 'glycopeptidepy/_c/collectiontools.pxd'
2023-09-21T22:22:13,407   adding 'glycopeptidepy/_c/collectiontools.pyx'
2023-09-21T22:22:13,408   adding 'glycopeptidepy/_c/compat.h'
2023-09-21T22:22:13,409   adding 'glycopeptidepy/_c/compat.pxd'
2023-09-21T22:22:13,476   adding 'glycopeptidepy/_c/count_table.c'
2023-09-21T22:22:13,632   adding 'glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so'
2023-09-21T22:22:13,639   adding 'glycopeptidepy/_c/count_table.pxd'
2023-09-21T22:22:13,642   adding 'glycopeptidepy/_c/count_table.pyx'
2023-09-21T22:22:13,643   adding 'glycopeptidepy/_c/cythonize.py'
2023-09-21T22:22:13,686   adding 'glycopeptidepy/_c/parser.c'
2023-09-21T22:22:13,773   adding 'glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so'
2023-09-21T22:22:13,777   adding 'glycopeptidepy/_c/parser.pxd'
2023-09-21T22:22:13,779   adding 'glycopeptidepy/_c/parser.pyx'
2023-09-21T22:22:13,781   adding 'glycopeptidepy/_c/structure/__init__.py'
2023-09-21T22:22:13,856   adding 'glycopeptidepy/_c/structure/base.c'
2023-09-21T22:22:14,064   adding 'glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so'
2023-09-21T22:22:14,073   adding 'glycopeptidepy/_c/structure/base.pxd'
2023-09-21T22:22:14,075   adding 'glycopeptidepy/_c/structure/base.pyx'
2023-09-21T22:22:14,109   adding 'glycopeptidepy/_c/structure/constants.c'
2023-09-21T22:22:14,180   adding 'glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so'
2023-09-21T22:22:14,183   adding 'glycopeptidepy/_c/structure/constants.pxd'
2023-09-21T22:22:14,184   adding 'glycopeptidepy/_c/structure/constants.pyx'
2023-09-21T22:22:14,295   adding 'glycopeptidepy/_c/structure/fragment.c'
2023-09-21T22:22:14,606   adding 'glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so'
2023-09-21T22:22:14,620   adding 'glycopeptidepy/_c/structure/fragment.pxd'
2023-09-21T22:22:14,623   adding 'glycopeptidepy/_c/structure/fragment.pyx'
2023-09-21T22:22:14,697   adding 'glycopeptidepy/_c/structure/glycan.c'
2023-09-21T22:22:14,912   adding 'glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so'
2023-09-21T22:22:14,921   adding 'glycopeptidepy/_c/structure/glycan.pxd'
2023-09-21T22:22:14,923   adding 'glycopeptidepy/_c/structure/glycan.pyx'
2023-09-21T22:22:14,996   adding 'glycopeptidepy/_c/structure/sequence_methods.c'
2023-09-21T22:22:15,187   adding 'glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so'
2023-09-21T22:22:15,196   adding 'glycopeptidepy/_c/structure/sequence_methods.pxd'
2023-09-21T22:22:15,198   adding 'glycopeptidepy/_c/structure/sequence_methods.pyx'
2023-09-21T22:22:15,200   adding 'glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py'
2023-09-21T22:22:15,243   adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.c'
2023-09-21T22:22:15,331   adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so'
2023-09-21T22:22:15,335   adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd'
2023-09-21T22:22:15,337   adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx'
2023-09-21T22:22:15,443   adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c'
2023-09-21T22:22:15,734   adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so'
2023-09-21T22:22:15,747   adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd'
2023-09-21T22:22:15,751   adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx'
2023-09-21T22:22:15,900   adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c'
2023-09-21T22:22:16,305   adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so'
2023-09-21T22:22:16,321   adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd'
2023-09-21T22:22:16,324   adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx'
2023-09-21T22:22:16,326   adding 'glycopeptidepy/_c/structure/modification/__init__.py'
2023-09-21T22:22:16,365   adding 'glycopeptidepy/_c/structure/modification/modification.c'
2023-09-21T22:22:16,454   adding 'glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so'
2023-09-21T22:22:16,458   adding 'glycopeptidepy/_c/structure/modification/modification.pxd'
2023-09-21T22:22:16,459   adding 'glycopeptidepy/_c/structure/modification/modification.pyx'
2023-09-21T22:22:16,511   adding 'glycopeptidepy/_c/structure/modification/rule.c'
2023-09-21T22:22:16,643   adding 'glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so'
2023-09-21T22:22:16,650   adding 'glycopeptidepy/_c/structure/modification/rule.pxd'
2023-09-21T22:22:16,651   adding 'glycopeptidepy/_c/structure/modification/rule.pyx'
2023-09-21T22:22:16,692   adding 'glycopeptidepy/_c/structure/modification/source.c'
2023-09-21T22:22:16,780   adding 'glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so'
2023-09-21T22:22:16,785   adding 'glycopeptidepy/_c/structure/modification/source.pxd'
2023-09-21T22:22:16,786   adding 'glycopeptidepy/_c/structure/modification/source.pyx'
2023-09-21T22:22:16,787   adding 'glycopeptidepy/_c/structure/modification/target.pyx'
2023-09-21T22:22:16,789   adding 'glycopeptidepy/io/__init__.py'
2023-09-21T22:22:16,791   adding 'glycopeptidepy/io/annotation.py'
2023-09-21T22:22:16,795   adding 'glycopeptidepy/io/fasta.py'
2023-09-21T22:22:16,797   adding 'glycopeptidepy/io/mzid.py'
2023-09-21T22:22:16,798   adding 'glycopeptidepy/io/nextprot.py'
2023-09-21T22:22:16,801   adding 'glycopeptidepy/io/uniprot.py'
2023-09-21T22:22:16,803   adding 'glycopeptidepy/io/utils.py'
2023-09-21T22:22:16,804   adding 'glycopeptidepy/io/cv/__init__.py'
2023-09-21T22:22:16,806   adding 'glycopeptidepy/io/cv/peff.py'
2023-09-21T22:22:16,808   adding 'glycopeptidepy/io/cv/term.py'
2023-09-21T22:22:16,809   adding 'glycopeptidepy/io/cv/uniprot_ptm.py'
2023-09-21T22:22:16,811   adding 'glycopeptidepy/structure/__init__.py'
2023-09-21T22:22:16,813   adding 'glycopeptidepy/structure/base.py'
2023-09-21T22:22:16,814   adding 'glycopeptidepy/structure/composition.py'
2023-09-21T22:22:16,815   adding 'glycopeptidepy/structure/constants.py'
2023-09-21T22:22:16,818   adding 'glycopeptidepy/structure/fragment.py'
2023-09-21T22:22:16,820   adding 'glycopeptidepy/structure/glycan.py'
2023-09-21T22:22:16,822   adding 'glycopeptidepy/structure/parser.py'
2023-09-21T22:22:16,824   adding 'glycopeptidepy/structure/residue.py'
2023-09-21T22:22:16,826   adding 'glycopeptidepy/structure/sequence_composition.py'
2023-09-21T22:22:16,827   adding 'glycopeptidepy/structure/terminal_group.py'
2023-09-21T22:22:16,829   adding 'glycopeptidepy/structure/fragmentation_strategy/__init__.py'
2023-09-21T22:22:16,830   adding 'glycopeptidepy/structure/fragmentation_strategy/base.py'
2023-09-21T22:22:16,835   adding 'glycopeptidepy/structure/fragmentation_strategy/glycan.py'
2023-09-21T22:22:16,838   adding 'glycopeptidepy/structure/fragmentation_strategy/peptide.py'
2023-09-21T22:22:16,840   adding 'glycopeptidepy/structure/modification/__init__.py'
2023-09-21T22:22:16,841   adding 'glycopeptidepy/structure/modification/descriptors.py'
2023-09-21T22:22:16,843   adding 'glycopeptidepy/structure/modification/glycosylation.py'
2023-09-21T22:22:16,845   adding 'glycopeptidepy/structure/modification/modification.py'
2023-09-21T22:22:16,848   adding 'glycopeptidepy/structure/modification/rule.py'
2023-09-21T22:22:16,851   adding 'glycopeptidepy/structure/modification/source.py'
2023-09-21T22:22:16,852   adding 'glycopeptidepy/structure/modification/target.py'
2023-09-21T22:22:16,854   adding 'glycopeptidepy/structure/modification/utils.py'
2023-09-21T22:22:16,855   adding 'glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv'
2023-09-21T22:22:16,856   adding 'glycopeptidepy/structure/modification/data/__init__.py'
2023-09-21T22:22:16,858   adding 'glycopeptidepy/structure/modification/data/patch_unimod.py'
2023-09-21T22:22:16,922   adding 'glycopeptidepy/structure/modification/data/unimod.json'
2023-09-21T22:22:16,939   adding 'glycopeptidepy/structure/modification/data/unimod.py'
2023-09-21T22:22:16,940   adding 'glycopeptidepy/structure/sequence/__init__.py'
2023-09-21T22:22:16,942   adding 'glycopeptidepy/structure/sequence/base.py'
2023-09-21T22:22:16,944   adding 'glycopeptidepy/structure/sequence/glycosylated_sequence.py'
2023-09-21T22:22:16,946   adding 'glycopeptidepy/structure/sequence/implementation.py'
2023-09-21T22:22:16,947   adding 'glycopeptidepy/structure/sequence/mutable_sequence.py'
2023-09-21T22:22:16,949   adding 'glycopeptidepy/test/__init__.py'
2023-09-21T22:22:16,951   adding 'glycopeptidepy/test/sequence_test_suite.py'
2023-09-21T22:22:16,952   adding 'glycopeptidepy/utils/__init__.py'
2023-09-21T22:22:16,954   adding 'glycopeptidepy/utils/collectiontools.py'
2023-09-21T22:22:16,956   adding 'glycopeptidepy/utils/intervals.py'
2023-09-21T22:22:16,957   adding 'glycopeptidepy/utils/iterators.py'
2023-09-21T22:22:16,958   adding 'glycopeptidepy/utils/memoize.py'
2023-09-21T22:22:16,960   adding 'glycopeptidepy/utils/sequence_tree.py'
2023-09-21T22:22:16,962   adding 'glycopeptidepy-0.0.23.dist-info/METADATA'
2023-09-21T22:22:16,963   adding 'glycopeptidepy-0.0.23.dist-info/WHEEL'
2023-09-21T22:22:16,964   adding 'glycopeptidepy-0.0.23.dist-info/top_level.txt'
2023-09-21T22:22:16,966   adding 'glycopeptidepy-0.0.23.dist-info/RECORD'
2023-09-21T22:22:17,046   removing build/bdist.linux-armv7l/wheel
2023-09-21T22:22:17,240   Building wheel for glycopeptidepy (pyproject.toml): finished with status 'done'
2023-09-21T22:22:17,399   Created wheel for glycopeptidepy: filename=glycopeptidepy-0.0.23-cp311-cp311-linux_armv7l.whl size=6678616 sha256=1a6190c41982ed5745ce05dc44b8f96c02977acfb2c997941457c14da32cc791
2023-09-21T22:22:17,400   Stored in directory: /tmp/pip-ephem-wheel-cache-azlgqxdo/wheels/36/b6/21/6b44fe9799cc0cf811abd0faa9cbee3a955e48a48b30f55fe5
2023-09-21T22:22:17,415 Successfully built glycopeptidepy
2023-09-21T22:22:17,599 Removed build tracker: '/tmp/pip-build-tracker-lvgw_3jv'