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https://pypi.org/simple/glycopeptidepy/ 2023-09-22T08:04:08,910 Given no hashes to check 1 links for project 'glycopeptidepy': discarding no candidates 2023-09-22T08:04:08,928 Collecting glycopeptidepy==0.0.25 2023-09-22T08:04:08,931 Created temporary directory: /tmp/pip-unpack-f1194xwk 2023-09-22T08:04:09,630 Downloading glycopeptidepy-0.0.25.tar.gz (1.4 MB) 2023-09-22T08:04:10,535 Added glycopeptidepy==0.0.25 from https://files.pythonhosted.org/packages/69/68/e57bf05db279997551045e493a4a5ddcba61a01c95afe46732815035cb86/glycopeptidepy-0.0.25.tar.gz to build tracker '/tmp/pip-build-tracker-nrr2a9z8' 2023-09-22T08:04:10,543 Created temporary directory: /tmp/pip-build-env-_y_cmrlg 2023-09-22T08:04:10,549 Installing build dependencies: started 2023-09-22T08:04:10,551 Running command pip subprocess to install build dependencies 2023-09-22T08:04:11,702 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-22T08:04:12,222 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-22T08:04:13,788 Collecting setuptools 2023-09-22T08:04:13,789 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-22T08:04:13,795 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-22T08:04:14,006 Collecting wheel 2023-09-22T08:04:14,022 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-22T08:04:15,397 Collecting Cython 2023-09-22T08:04:15,398 Obtaining dependency information for Cython from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata 2023-09-22T08:04:15,404 Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-22T08:04:15,832 Collecting glypy 2023-09-22T08:04:15,993 Using cached https://www.piwheels.org/simple/glypy/glypy-1.0.3-cp311-cp311-linux_armv7l.whl (1.7 MB) 2023-09-22T08:04:16,394 Collecting hjson (from glypy) 2023-09-22T08:04:16,421 Using cached https://www.piwheels.org/simple/hjson/hjson-3.1.0-py3-none-any.whl (54 kB) 2023-09-22T08:04:16,544 Collecting six (from glypy) 2023-09-22T08:04:16,559 Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB) 2023-09-22T08:04:16,591 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-22T08:04:16,626 Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB) 2023-09-22T08:04:19,148 Installing collected packages: hjson, wheel, six, setuptools, Cython, glypy 2023-09-22T08:04:19,398 Creating /tmp/pip-build-env-_y_cmrlg/overlay/local/bin 2023-09-22T08:04:19,401 changing mode of /tmp/pip-build-env-_y_cmrlg/overlay/local/bin/hjson to 755 2023-09-22T08:04:19,777 changing mode of /tmp/pip-build-env-_y_cmrlg/overlay/local/bin/wheel to 755 2023-09-22T08:04:24,798 changing mode of /tmp/pip-build-env-_y_cmrlg/overlay/local/bin/cygdb to 755 2023-09-22T08:04:24,800 changing mode of /tmp/pip-build-env-_y_cmrlg/overlay/local/bin/cython to 755 2023-09-22T08:04:24,802 changing mode of /tmp/pip-build-env-_y_cmrlg/overlay/local/bin/cythonize to 755 2023-09-22T08:04:26,152 Successfully installed Cython-3.0.2 glypy-1.0.3 hjson-3.1.0 setuptools-68.2.2 six-1.16.0 wheel-0.41.2 2023-09-22T08:04:26,765 Installing build dependencies: finished with status 'done' 2023-09-22T08:04:26,778 Getting requirements to build wheel: started 2023-09-22T08:04:26,779 Running command Getting requirements to build wheel 2023-09-22T08:04:31,344 /tmp/pip-build-env-_y_cmrlg/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-90lx1x7s/glycopeptidepy_438fba1daba3444bad49e263183a2fa2/src/glycopeptidepy/_c/algorithm.pyx 2023-09-22T08:04:31,344 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-22T08:04:32,613 /tmp/pip-build-env-_y_cmrlg/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-90lx1x7s/glycopeptidepy_438fba1daba3444bad49e263183a2fa2/src/glycopeptidepy/_c/collectiontools.pxd 2023-09-22T08:04:32,614 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-22T08:04:34,412 /tmp/pip-build-env-_y_cmrlg/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-90lx1x7s/glycopeptidepy_438fba1daba3444bad49e263183a2fa2/src/glycopeptidepy/_c/count_table.pxd 2023-09-22T08:04:34,413 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-22T08:04:35,887 warning: src/glycopeptidepy/_c/count_table.pyx:15:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:35,904 warning: src/glycopeptidepy/_c/count_table.pyx:102:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:35,924 warning: src/glycopeptidepy/_c/count_table.pyx:184:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:35,927 warning: src/glycopeptidepy/_c/count_table.pyx:195:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:37,503 /tmp/pip-build-env-_y_cmrlg/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-90lx1x7s/glycopeptidepy_438fba1daba3444bad49e263183a2fa2/src/glycopeptidepy/_c/parser.pxd 2023-09-22T08:04:37,503 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-22T08:04:39,380 warning: src/glycopeptidepy/_c/parser.pyx:224:23: Unreachable code 2023-09-22T08:04:39,701 /tmp/pip-build-env-_y_cmrlg/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-90lx1x7s/glycopeptidepy_438fba1daba3444bad49e263183a2fa2/src/glycopeptidepy/_c/structure/base.pxd 2023-09-22T08:04:39,701 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-22T08:04:39,712 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:39,713 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:39,713 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:39,714 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:39,784 warning: src/glycopeptidepy/_c/structure/base.pyx:11:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:39,785 warning: src/glycopeptidepy/_c/structure/base.pyx:17:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:41,284 /tmp/pip-build-env-_y_cmrlg/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-90lx1x7s/glycopeptidepy_438fba1daba3444bad49e263183a2fa2/src/glycopeptidepy/_c/structure/constants.pxd 2023-09-22T08:04:41,285 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-22T08:04:41,492 /tmp/pip-build-env-_y_cmrlg/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-90lx1x7s/glycopeptidepy_438fba1daba3444bad49e263183a2fa2/src/glycopeptidepy/_c/structure/fragment.pxd 2023-09-22T08:04:41,493 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-22T08:04:43,072 warning: src/glycopeptidepy/_c/structure/fragment.pyx:41:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:43,073 warning: src/glycopeptidepy/_c/structure/fragment.pyx:42:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:43,478 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:43,479 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:43,479 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:43,480 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:45,201 /tmp/pip-build-env-_y_cmrlg/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-90lx1x7s/glycopeptidepy_438fba1daba3444bad49e263183a2fa2/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd 2023-09-22T08:04:45,202 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-22T08:04:46,873 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:46,874 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:46,875 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:46,875 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:47,199 /tmp/pip-build-env-_y_cmrlg/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-90lx1x7s/glycopeptidepy_438fba1daba3444bad49e263183a2fa2/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd 2023-09-22T08:04:47,200 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-22T08:04:48,790 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:48,791 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:48,792 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:48,792 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:51,258 /tmp/pip-build-env-_y_cmrlg/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-90lx1x7s/glycopeptidepy_438fba1daba3444bad49e263183a2fa2/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd 2023-09-22T08:04:51,259 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-22T08:04:52,789 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:52,790 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:52,791 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:52,791 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:57,503 /tmp/pip-build-env-_y_cmrlg/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-90lx1x7s/glycopeptidepy_438fba1daba3444bad49e263183a2fa2/src/glycopeptidepy/_c/structure/glycan.pxd 2023-09-22T08:04:57,503 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-22T08:04:57,587 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:57,588 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:57,589 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:57,589 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:59,418 /tmp/pip-build-env-_y_cmrlg/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-90lx1x7s/glycopeptidepy_438fba1daba3444bad49e263183a2fa2/src/glycopeptidepy/_c/structure/modification/modification.pxd 2023-09-22T08:04:59,419 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-22T08:04:59,437 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:59,438 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:59,439 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:59,440 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:59,822 /tmp/pip-build-env-_y_cmrlg/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-90lx1x7s/glycopeptidepy_438fba1daba3444bad49e263183a2fa2/src/glycopeptidepy/_c/structure/modification/rule.pxd 2023-09-22T08:04:59,823 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-22T08:04:59,882 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:59,883 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:59,884 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:04:59,884 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:05:00,586 /tmp/pip-build-env-_y_cmrlg/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-90lx1x7s/glycopeptidepy_438fba1daba3444bad49e263183a2fa2/src/glycopeptidepy/_c/structure/modification/source.pxd 2023-09-22T08:05:00,587 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-22T08:05:00,651 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:05:00,652 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:05:00,652 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:05:00,653 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:05:01,566 /tmp/pip-build-env-_y_cmrlg/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-90lx1x7s/glycopeptidepy_438fba1daba3444bad49e263183a2fa2/src/glycopeptidepy/_c/structure/sequence_methods.pxd 2023-09-22T08:05:01,566 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-22T08:05:01,625 warning: src/glycopeptidepy/_c/structure/base.pxd:63:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:05:01,625 warning: src/glycopeptidepy/_c/structure/base.pxd:64:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:05:01,626 warning: src/glycopeptidepy/_c/structure/base.pxd:66:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:05:01,627 warning: src/glycopeptidepy/_c/structure/base.pxd:69:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2023-09-22T08:05:04,431 Compiling src/glycopeptidepy/_c/collectiontools.pyx because it changed. 2023-09-22T08:05:04,432 Compiling src/glycopeptidepy/_c/count_table.pyx because it changed. 2023-09-22T08:05:04,433 Compiling src/glycopeptidepy/_c/parser.pyx because it changed. 2023-09-22T08:05:04,434 Compiling src/glycopeptidepy/_c/structure/base.pyx because it changed. 2023-09-22T08:05:04,435 Compiling src/glycopeptidepy/_c/structure/fragment.pyx because it changed. 2023-09-22T08:05:04,436 Compiling src/glycopeptidepy/_c/structure/constants.pyx because it changed. 2023-09-22T08:05:04,436 Compiling src/glycopeptidepy/_c/structure/glycan.pyx because it changed. 2023-09-22T08:05:04,437 Compiling src/glycopeptidepy/_c/structure/sequence_methods.pyx because it changed. 2023-09-22T08:05:04,438 Compiling src/glycopeptidepy/_c/structure/modification/rule.pyx because it changed. 2023-09-22T08:05:04,439 Compiling src/glycopeptidepy/_c/structure/modification/modification.pyx because it changed. 2023-09-22T08:05:04,440 Compiling src/glycopeptidepy/_c/structure/modification/source.pyx because it changed. 2023-09-22T08:05:04,441 Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it changed. 2023-09-22T08:05:04,442 Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it changed. 2023-09-22T08:05:04,444 Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it changed. 2023-09-22T08:05:04,445 Compiling src/glycopeptidepy/_c/algorithm.pyx because it changed. 2023-09-22T08:05:04,447 [ 1/15] Cythonizing src/glycopeptidepy/_c/algorithm.pyx 2023-09-22T08:05:04,448 [ 2/15] Cythonizing src/glycopeptidepy/_c/collectiontools.pyx 2023-09-22T08:05:04,449 [ 3/15] Cythonizing src/glycopeptidepy/_c/count_table.pyx 2023-09-22T08:05:04,450 [ 4/15] Cythonizing src/glycopeptidepy/_c/parser.pyx 2023-09-22T08:05:04,452 [ 5/15] Cythonizing src/glycopeptidepy/_c/structure/base.pyx 2023-09-22T08:05:04,453 [ 6/15] Cythonizing src/glycopeptidepy/_c/structure/constants.pyx 2023-09-22T08:05:04,454 [ 7/15] Cythonizing src/glycopeptidepy/_c/structure/fragment.pyx 2023-09-22T08:05:04,455 [ 8/15] Cythonizing src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx 2023-09-22T08:05:04,456 [ 9/15] Cythonizing src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx 2023-09-22T08:05:04,457 [10/15] Cythonizing src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx 2023-09-22T08:05:04,458 [11/15] Cythonizing src/glycopeptidepy/_c/structure/glycan.pyx 2023-09-22T08:05:04,459 [12/15] Cythonizing src/glycopeptidepy/_c/structure/modification/modification.pyx 2023-09-22T08:05:04,460 [13/15] Cythonizing src/glycopeptidepy/_c/structure/modification/rule.pyx 2023-09-22T08:05:04,461 [14/15] Cythonizing src/glycopeptidepy/_c/structure/modification/source.pyx 2023-09-22T08:05:04,462 [15/15] Cythonizing src/glycopeptidepy/_c/structure/sequence_methods.pyx 2023-09-22T08:05:04,753 running egg_info 2023-09-22T08:05:04,761 writing src/glycopeptidepy.egg-info/PKG-INFO 2023-09-22T08:05:04,766 writing dependency_links to src/glycopeptidepy.egg-info/dependency_links.txt 2023-09-22T08:05:04,772 writing requirements to src/glycopeptidepy.egg-info/requires.txt 2023-09-22T08:05:04,775 writing top-level names to src/glycopeptidepy.egg-info/top_level.txt 2023-09-22T08:05:05,068 reading manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-22T08:05:05,080 reading manifest template 'MANIFEST.in' 2023-09-22T08:05:05,310 writing manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-22T08:05:05,802 Getting requirements to build wheel: finished with status 'done' 2023-09-22T08:05:05,814 Created temporary directory: /tmp/pip-modern-metadata-v00o223s 2023-09-22T08:05:05,816 Preparing metadata (pyproject.toml): started 2023-09-22T08:05:05,818 Running command Preparing metadata (pyproject.toml) 2023-09-22T08:05:08,784 running dist_info 2023-09-22T08:05:08,807 creating /tmp/pip-modern-metadata-v00o223s/glycopeptidepy.egg-info 2023-09-22T08:05:08,814 writing /tmp/pip-modern-metadata-v00o223s/glycopeptidepy.egg-info/PKG-INFO 2023-09-22T08:05:08,823 writing dependency_links to /tmp/pip-modern-metadata-v00o223s/glycopeptidepy.egg-info/dependency_links.txt 2023-09-22T08:05:08,826 writing requirements to /tmp/pip-modern-metadata-v00o223s/glycopeptidepy.egg-info/requires.txt 2023-09-22T08:05:08,828 writing top-level names to /tmp/pip-modern-metadata-v00o223s/glycopeptidepy.egg-info/top_level.txt 2023-09-22T08:05:08,832 writing manifest file '/tmp/pip-modern-metadata-v00o223s/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-22T08:05:08,874 reading manifest file '/tmp/pip-modern-metadata-v00o223s/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-22T08:05:08,876 reading manifest template 'MANIFEST.in' 2023-09-22T08:05:09,072 writing manifest file '/tmp/pip-modern-metadata-v00o223s/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-22T08:05:09,073 creating '/tmp/pip-modern-metadata-v00o223s/glycopeptidepy-0.0.25.dist-info' 2023-09-22T08:05:09,300 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-22T08:05:09,305 Source in /tmp/pip-wheel-90lx1x7s/glycopeptidepy_438fba1daba3444bad49e263183a2fa2 has version 0.0.25, which satisfies requirement glycopeptidepy==0.0.25 from https://files.pythonhosted.org/packages/69/68/e57bf05db279997551045e493a4a5ddcba61a01c95afe46732815035cb86/glycopeptidepy-0.0.25.tar.gz 2023-09-22T08:05:09,306 Removed glycopeptidepy==0.0.25 from https://files.pythonhosted.org/packages/69/68/e57bf05db279997551045e493a4a5ddcba61a01c95afe46732815035cb86/glycopeptidepy-0.0.25.tar.gz from build tracker '/tmp/pip-build-tracker-nrr2a9z8' 2023-09-22T08:05:09,309 Created temporary directory: /tmp/pip-unpack-z29qs255 2023-09-22T08:05:09,310 Created temporary directory: /tmp/pip-unpack-uc55echz 2023-09-22T08:05:09,319 Building wheels for collected packages: glycopeptidepy 2023-09-22T08:05:09,324 Created temporary directory: /tmp/pip-wheel-gmbj7xum 2023-09-22T08:05:09,324 Destination directory: /tmp/pip-wheel-gmbj7xum 2023-09-22T08:05:09,327 Building wheel for glycopeptidepy (pyproject.toml): started 2023-09-22T08:05:09,328 Running command Building wheel for glycopeptidepy (pyproject.toml) 2023-09-22T08:05:12,784 running bdist_wheel 2023-09-22T08:05:12,822 running build 2023-09-22T08:05:12,823 running build_py 2023-09-22T08:05:12,831 creating build 2023-09-22T08:05:12,832 creating build/lib.linux-armv7l-cpython-311 2023-09-22T08:05:12,833 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-22T08:05:12,834 copying src/glycopeptidepy/algorithm.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-22T08:05:12,837 copying src/glycopeptidepy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-22T08:05:12,839 copying src/glycopeptidepy/version.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-22T08:05:12,841 copying src/glycopeptidepy/enzyme.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2023-09-22T08:05:12,845 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-22T08:05:12,846 copying src/glycopeptidepy/utils/sequence_tree.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-22T08:05:12,849 copying src/glycopeptidepy/utils/collectiontools.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-22T08:05:12,851 copying src/glycopeptidepy/utils/memoize.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-22T08:05:12,853 copying src/glycopeptidepy/utils/iterators.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-22T08:05:12,855 copying src/glycopeptidepy/utils/intervals.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-22T08:05:12,858 copying src/glycopeptidepy/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2023-09-22T08:05:12,860 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-22T08:05:12,861 copying src/glycopeptidepy/io/nextprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-22T08:05:12,863 copying src/glycopeptidepy/io/mzid.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-22T08:05:12,866 copying src/glycopeptidepy/io/uniprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-22T08:05:12,869 copying src/glycopeptidepy/io/utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-22T08:05:12,871 copying src/glycopeptidepy/io/fasta.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-22T08:05:12,874 copying src/glycopeptidepy/io/annotation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-22T08:05:12,876 copying src/glycopeptidepy/io/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2023-09-22T08:05:12,878 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-22T08:05:12,879 copying src/glycopeptidepy/_c/cythonize.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-22T08:05:12,881 copying src/glycopeptidepy/_c/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-22T08:05:12,883 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-22T08:05:12,885 copying src/glycopeptidepy/structure/sequence_composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-22T08:05:12,887 copying src/glycopeptidepy/structure/terminal_group.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-22T08:05:12,890 copying src/glycopeptidepy/structure/fragment.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-22T08:05:12,893 copying src/glycopeptidepy/structure/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-22T08:05:12,895 copying src/glycopeptidepy/structure/parser.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-22T08:05:12,897 copying src/glycopeptidepy/structure/constants.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-22T08:05:12,899 copying src/glycopeptidepy/structure/residue.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-22T08:05:12,901 copying src/glycopeptidepy/structure/composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-22T08:05:12,903 copying src/glycopeptidepy/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-22T08:05:12,905 copying src/glycopeptidepy/structure/glycan.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2023-09-22T08:05:12,908 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-22T08:05:12,909 copying src/glycopeptidepy/test/sequence_test_suite.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-22T08:05:12,912 copying src/glycopeptidepy/test/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2023-09-22T08:05:12,914 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-22T08:05:12,915 copying src/glycopeptidepy/io/cv/peff.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-22T08:05:12,917 copying src/glycopeptidepy/io/cv/term.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-22T08:05:12,920 copying src/glycopeptidepy/io/cv/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-22T08:05:12,922 copying src/glycopeptidepy/io/cv/uniprot_ptm.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2023-09-22T08:05:12,925 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/data 2023-09-22T08:05:12,926 copying src/glycopeptidepy/io/cv/data/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/data 2023-09-22T08:05:12,928 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-22T08:05:12,929 copying src/glycopeptidepy/_c/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-22T08:05:12,931 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:05:12,932 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:05:12,934 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-22T08:05:12,935 copying src/glycopeptidepy/_c/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-22T08:05:12,938 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-22T08:05:12,939 copying src/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-22T08:05:12,941 copying src/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-22T08:05:12,944 copying src/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-22T08:05:12,945 copying src/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2023-09-22T08:05:12,950 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-22T08:05:12,951 copying src/glycopeptidepy/structure/modification/source.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-22T08:05:12,954 copying src/glycopeptidepy/structure/modification/descriptors.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-22T08:05:12,955 copying src/glycopeptidepy/structure/modification/utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-22T08:05:12,957 copying src/glycopeptidepy/structure/modification/target.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-22T08:05:12,960 copying src/glycopeptidepy/structure/modification/modification.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-22T08:05:12,963 copying src/glycopeptidepy/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-22T08:05:12,965 copying src/glycopeptidepy/structure/modification/rule.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-22T08:05:12,968 copying src/glycopeptidepy/structure/modification/glycosylation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2023-09-22T08:05:12,971 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-22T08:05:12,972 copying src/glycopeptidepy/structure/sequence/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-22T08:05:12,975 copying src/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-22T08:05:12,977 copying src/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-22T08:05:12,979 copying src/glycopeptidepy/structure/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-22T08:05:12,981 copying src/glycopeptidepy/structure/sequence/implementation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2023-09-22T08:05:12,984 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-22T08:05:12,985 copying src/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-22T08:05:12,987 copying src/glycopeptidepy/structure/modification/data/unimod.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-22T08:05:12,990 copying src/glycopeptidepy/structure/modification/data/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-22T08:05:12,992 running egg_info 2023-09-22T08:05:12,998 writing src/glycopeptidepy.egg-info/PKG-INFO 2023-09-22T08:05:13,001 writing dependency_links to src/glycopeptidepy.egg-info/dependency_links.txt 2023-09-22T08:05:13,002 writing requirements to src/glycopeptidepy.egg-info/requires.txt 2023-09-22T08:05:13,003 writing top-level names to src/glycopeptidepy.egg-info/top_level.txt 2023-09-22T08:05:13,025 reading manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-22T08:05:13,030 reading manifest template 'MANIFEST.in' 2023-09-22T08:05:13,675 writing manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-09-22T08:05:13,681 copying src/glycopeptidepy/_c/algorithm.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-22T08:05:13,695 copying src/glycopeptidepy/_c/algorithm.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-22T08:05:13,698 copying src/glycopeptidepy/_c/collectiontools.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-22T08:05:13,706 copying src/glycopeptidepy/_c/collectiontools.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-22T08:05:13,708 copying src/glycopeptidepy/_c/collectiontools.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-22T08:05:13,710 copying src/glycopeptidepy/_c/compat.h -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-22T08:05:13,712 copying src/glycopeptidepy/_c/compat.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-22T08:05:13,714 copying src/glycopeptidepy/_c/count_table.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-22T08:05:13,732 copying src/glycopeptidepy/_c/count_table.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-22T08:05:13,734 copying src/glycopeptidepy/_c/count_table.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-22T08:05:13,736 copying src/glycopeptidepy/_c/parser.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-22T08:05:13,747 copying src/glycopeptidepy/_c/parser.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-22T08:05:13,749 copying src/glycopeptidepy/_c/parser.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2023-09-22T08:05:13,752 copying src/glycopeptidepy/_c/structure/base.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-22T08:05:13,774 copying src/glycopeptidepy/_c/structure/base.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-22T08:05:13,776 copying src/glycopeptidepy/_c/structure/base.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-22T08:05:13,779 copying src/glycopeptidepy/_c/structure/constants.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-22T08:05:13,787 copying src/glycopeptidepy/_c/structure/constants.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-22T08:05:13,789 copying src/glycopeptidepy/_c/structure/constants.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-22T08:05:13,793 copying src/glycopeptidepy/_c/structure/fragment.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-22T08:05:13,823 copying src/glycopeptidepy/_c/structure/fragment.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-22T08:05:13,824 copying src/glycopeptidepy/_c/structure/fragment.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-22T08:05:13,827 copying src/glycopeptidepy/_c/structure/glycan.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-22T08:05:13,847 copying src/glycopeptidepy/_c/structure/glycan.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-22T08:05:13,850 copying src/glycopeptidepy/_c/structure/glycan.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-22T08:05:13,854 copying src/glycopeptidepy/_c/structure/sequence_methods.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-22T08:05:13,897 copying src/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-22T08:05:13,899 copying src/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2023-09-22T08:05:13,903 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:05:13,921 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:05:13,924 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:05:13,927 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:05:13,961 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:05:13,963 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:05:13,966 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:05:14,019 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:05:14,021 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:05:14,024 copying src/glycopeptidepy/_c/structure/modification/modification.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-22T08:05:14,034 copying src/glycopeptidepy/_c/structure/modification/modification.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-22T08:05:14,036 copying src/glycopeptidepy/_c/structure/modification/modification.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-22T08:05:14,038 copying src/glycopeptidepy/_c/structure/modification/rule.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-22T08:05:14,052 copying src/glycopeptidepy/_c/structure/modification/rule.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-22T08:05:14,054 copying src/glycopeptidepy/_c/structure/modification/rule.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-22T08:05:14,056 copying src/glycopeptidepy/_c/structure/modification/source.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-22T08:05:14,067 copying src/glycopeptidepy/_c/structure/modification/source.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-22T08:05:14,069 copying src/glycopeptidepy/_c/structure/modification/source.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-22T08:05:14,071 copying src/glycopeptidepy/_c/structure/modification/target.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2023-09-22T08:05:14,073 copying src/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-22T08:05:14,075 copying src/glycopeptidepy/structure/modification/data/unimod.json -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2023-09-22T08:05:14,109 running build_ext 2023-09-22T08:05:14,115 building 'glycopeptidepy._c.collectiontools' extension 2023-09-22T08:05:14,115 creating build/temp.linux-armv7l-cpython-311 2023-09-22T08:05:14,116 creating build/temp.linux-armv7l-cpython-311/src 2023-09-22T08:05:14,117 creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy 2023-09-22T08:05:14,117 creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c 2023-09-22T08:05:14,118 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/collectiontools.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/collectiontools.o 2023-09-22T08:05:20,892 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/collectiontools.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so 2023-09-22T08:05:21,008 building 'glycopeptidepy._c.count_table' extension 2023-09-22T08:05:21,009 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/count_table.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/count_table.o 2023-09-22T08:05:22,801 src/glycopeptidepy/_c/count_table.c:4463:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist’ defined but not used [-Wunused-function] 2023-09-22T08:05:22,801 4463 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist(size_t __pyx_v_n, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_inst) { 2023-09-22T08:05:22,802 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T08:05:22,804 src/glycopeptidepy/_c/count_table.c:4192:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get’ defined but not used [-Wunused-function] 2023-09-22T08:05:22,805 4192 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2023-09-22T08:05:22,806 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T08:05:22,808 src/glycopeptidepy/_c/count_table.c:3950:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put’ defined but not used [-Wunused-function] 2023-09-22T08:05:22,809 3950 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2023-09-22T08:05:22,809 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T08:05:38,074 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/count_table.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so 2023-09-22T08:05:38,203 building 'glycopeptidepy._c.parser' extension 2023-09-22T08:05:38,203 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/parser.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/parser.o 2023-09-22T08:05:38,568 In file included from src/glycopeptidepy/_c/parser.c:1187: 2023-09-22T08:05:38,568 src/glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2023-09-22T08:05:38,569 38 | #define PyInt_Check PyLong_Check 2023-09-22T08:05:38,569 | 2023-09-22T08:05:38,570 src/glycopeptidepy/_c/parser.c:1085: note: this is the location of the previous definition 2023-09-22T08:05:38,570 1085 | #define PyInt_Check(op) PyLong_Check(op) 2023-09-22T08:05:38,571 | 2023-09-22T08:05:38,572 src/glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2023-09-22T08:05:38,572 39 | #define PyInt_CheckExact PyLong_CheckExact 2023-09-22T08:05:38,573 | 2023-09-22T08:05:38,574 src/glycopeptidepy/_c/parser.c:1086: note: this is the location of the previous definition 2023-09-22T08:05:38,574 1086 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2023-09-22T08:05:38,575 | 2023-09-22T08:05:38,591 src/glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser__cstring_sequence_tokenizer’: 2023-09-22T08:05:38,594 src/glycopeptidepy/_c/parser.c:3603:21: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-22T08:05:38,595 3603 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2023-09-22T08:05:38,596 | ^ 2023-09-22T08:05:38,664 src/glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser_parse_simple’: 2023-09-22T08:05:38,670 src/glycopeptidepy/_c/parser.c:7712:23: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-22T08:05:38,670 7712 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2023-09-22T08:05:38,671 | ^ 2023-09-22T08:05:46,174 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/parser.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so 2023-09-22T08:05:46,331 building 'glycopeptidepy._c.structure.base' extension 2023-09-22T08:05:46,332 creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure 2023-09-22T08:05:46,333 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/base.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/base.o 2023-09-22T08:06:07,673 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/base.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so 2023-09-22T08:06:07,807 building 'glycopeptidepy._c.structure.fragment' extension 2023-09-22T08:06:07,808 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/fragment.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragment.o 2023-09-22T08:06:08,178 In file included from src/glycopeptidepy/_c/structure/fragment.c:1188: 2023-09-22T08:06:08,178 src/glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2023-09-22T08:06:08,179 38 | #define PyInt_Check PyLong_Check 2023-09-22T08:06:08,179 | 2023-09-22T08:06:08,180 src/glycopeptidepy/_c/structure/fragment.c:1085: note: this is the location of the previous definition 2023-09-22T08:06:08,181 1085 | #define PyInt_Check(op) PyLong_Check(op) 2023-09-22T08:06:08,181 | 2023-09-22T08:06:08,182 src/glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2023-09-22T08:06:08,182 39 | #define PyInt_CheckExact PyLong_CheckExact 2023-09-22T08:06:08,183 | 2023-09-22T08:06:08,184 src/glycopeptidepy/_c/structure/fragment.c:1086: note: this is the location of the previous definition 2023-09-22T08:06:08,184 1086 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2023-09-22T08:06:08,185 | 2023-09-22T08:06:08,224 src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_init_str_ints’: 2023-09-22T08:06:08,229 src/glycopeptidepy/_c/structure/fragment.c:5798:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-22T08:06:08,230 5798 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2023-09-22T08:06:08,230 | ^ 2023-09-22T08:06:08,231 src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_get_str_int’: 2023-09-22T08:06:08,237 src/glycopeptidepy/_c/structure/fragment.c:6027:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-22T08:06:08,238 6027 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2023-09-22T08:06:08,238 | ^ 2023-09-22T08:06:08,477 src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_15PeptideFragment_get_fragment_name’: 2023-09-22T08:06:08,490 src/glycopeptidepy/_c/structure/fragment.c:14261:22: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-22T08:06:08,490 14261 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-22T08:06:08,491 | ^ 2023-09-22T08:06:08,509 src/glycopeptidepy/_c/structure/fragment.c:14576:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-22T08:06:08,509 14576 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-22T08:06:08,510 | ^ 2023-09-22T08:06:08,523 src/glycopeptidepy/_c/structure/fragment.c:14749:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-22T08:06:08,524 14749 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-22T08:06:08,524 | ^ 2023-09-22T08:06:08,538 src/glycopeptidepy/_c/structure/fragment.c:14926:24: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-09-22T08:06:08,538 14926 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-09-22T08:06:08,539 | ^ 2023-09-22T08:06:45,621 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragment.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so 2023-09-22T08:06:45,785 building 'glycopeptidepy._c.structure.constants' extension 2023-09-22T08:06:45,786 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/constants.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/constants.o 2023-09-22T08:06:51,841 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/constants.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so 2023-09-22T08:06:51,967 building 'glycopeptidepy._c.structure.glycan' extension 2023-09-22T08:06:51,967 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/glycan.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/glycan.o 2023-09-22T08:07:14,696 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/glycan.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so 2023-09-22T08:07:14,829 building 'glycopeptidepy._c.structure.sequence_methods' extension 2023-09-22T08:07:14,829 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/sequence_methods.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/sequence_methods.o 2023-09-22T08:07:15,496 src/glycopeptidepy/_c/structure/sequence_methods.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_16sequence_methods_add_modification’: 2023-09-22T08:07:15,510 src/glycopeptidepy/_c/structure/sequence_methods.c:14877:36: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T08:07:15,511 14877 | __pyx_t_7 = (__pyx_v_position_ >= __pyx_t_8); 2023-09-22T08:07:15,511 | ^~ 2023-09-22T08:07:35,781 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/sequence_methods.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so 2023-09-22T08:07:35,912 building 'glycopeptidepy._c.structure.modification.rule' extension 2023-09-22T08:07:35,913 creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification 2023-09-22T08:07:35,914 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/modification/rule.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/rule.o 2023-09-22T08:07:48,308 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/rule.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so 2023-09-22T08:07:48,431 building 'glycopeptidepy._c.structure.modification.modification' extension 2023-09-22T08:07:48,431 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/modification/modification.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/modification.o 2023-09-22T08:07:56,433 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/modification.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so 2023-09-22T08:07:56,550 building 'glycopeptidepy._c.structure.modification.source' extension 2023-09-22T08:07:56,551 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/modification/source.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/source.o 2023-09-22T08:08:04,503 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/source.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so 2023-09-22T08:08:04,642 building 'glycopeptidepy._c.structure.fragmentation_strategy.base' extension 2023-09-22T08:08:04,643 creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:08:04,644 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.o 2023-09-22T08:08:13,649 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so 2023-09-22T08:08:13,763 building 'glycopeptidepy._c.structure.fragmentation_strategy.peptide' extension 2023-09-22T08:08:13,764 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o 2023-09-22T08:09:05,105 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so 2023-09-22T08:09:05,280 building 'glycopeptidepy._c.structure.fragmentation_strategy.glycan' extension 2023-09-22T08:09:05,280 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o 2023-09-22T08:09:05,923 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_fucosylate_extended’: 2023-09-22T08:09:05,935 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:12967:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2023-09-22T08:09:05,936 12967 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-09-22T08:09:05,936 | ^ 2023-09-22T08:09:05,948 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:12984:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2023-09-22T08:09:05,948 12984 | for (__pyx_t_9 = 1; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-09-22T08:09:05,949 | ^ 2023-09-22T08:09:06,090 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_n_glycan_stub_fragments’: 2023-09-22T08:09:06,107 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17287:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-22T08:09:06,108 17287 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-09-22T08:09:06,109 | ^ 2023-09-22T08:09:06,131 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_o_glycan_stub_fragments’: 2023-09-22T08:09:06,148 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17970:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-09-22T08:09:06,149 17970 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_15; __pyx_t_9+=1) { 2023-09-22T08:09:06,149 | ^ 2023-09-22T08:09:06,207 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_gag_linker_stub_fragments’: 2023-09-22T08:09:06,226 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:19888:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-09-22T08:09:06,226 19888 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_15; __pyx_t_9+=1) { 2023-09-22T08:09:06,227 | ^ 2023-09-22T08:09:06,280 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_mixed_stub_fragments’: 2023-09-22T08:09:06,300 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:21226:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-22T08:09:06,301 21226 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-09-22T08:09:06,302 | ^ 2023-09-22T08:09:06,322 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:21285:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-22T08:09:06,323 21285 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-09-22T08:09:06,323 | ^ 2023-09-22T08:09:06,344 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:21344:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-22T08:09:06,344 21344 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-09-22T08:09:06,345 | ^ 2023-09-22T08:09:38,929 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so 2023-09-22T08:09:39,083 building 'glycopeptidepy._c.algorithm' extension 2023-09-22T08:09:39,083 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/algorithm.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/algorithm.o 2023-09-22T08:09:53,598 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/algorithm.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so 2023-09-22T08:09:53,733 installing to build/bdist.linux-armv7l/wheel 2023-09-22T08:09:53,734 running install 2023-09-22T08:09:53,758 running install_lib 2023-09-22T08:09:53,767 creating build/bdist.linux-armv7l 2023-09-22T08:09:53,767 creating build/bdist.linux-armv7l/wheel 2023-09-22T08:09:53,769 creating build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-22T08:09:53,770 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-22T08:09:53,771 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/sequence_tree.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-22T08:09:53,774 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/collectiontools.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-22T08:09:53,776 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/memoize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-22T08:09:53,778 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/iterators.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-22T08:09:53,779 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-22T08:09:53,782 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-09-22T08:09:53,784 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-22T08:09:53,785 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/nextprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-22T08:09:53,787 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/mzid.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-22T08:09:53,789 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-22T08:09:53,792 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-22T08:09:53,794 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv/data 2023-09-22T08:09:53,795 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/data/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv/data 2023-09-22T08:09:53,796 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/peff.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-22T08:09:53,798 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/term.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-22T08:09:53,801 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-22T08:09:53,802 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-09-22T08:09:53,804 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-22T08:09:53,807 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-22T08:09:53,809 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/annotation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-22T08:09:53,811 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-09-22T08:09:53,813 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:53,814 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/cythonize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:53,816 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/compat.h -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:53,818 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:53,820 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:53,822 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:53,834 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:53,848 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/compat.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:53,850 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:53,851 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:53,854 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:53,856 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:53,868 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:53,877 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:53,880 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:53,881 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:09:53,882 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:09:53,919 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:09:53,921 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:09:53,954 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:09:53,962 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:09:53,996 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:09:54,019 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:09:54,022 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:09:54,024 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:09:54,025 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:09:54,037 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:09:54,038 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:09:54,040 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-09-22T08:09:54,043 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,064 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,066 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,082 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-22T08:09:54,083 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-22T08:09:54,144 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-22T08:09:54,146 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-22T08:09:54,157 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-22T08:09:54,160 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-22T08:09:54,161 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-22T08:09:54,171 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-22T08:09:54,172 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-22T08:09:54,183 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-22T08:09:54,185 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/target.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-22T08:09:54,186 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-22T08:09:54,188 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-22T08:09:54,202 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-22T08:09:54,212 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-09-22T08:09:54,214 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,231 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,233 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,234 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,252 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,254 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,257 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,284 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,286 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,289 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,291 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,293 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,318 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,335 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,342 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,362 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,364 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,405 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-09-22T08:09:54,407 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:54,422 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:54,431 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:54,452 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:54,454 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:54,455 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-09-22T08:09:54,469 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-22T08:09:54,470 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-22T08:09:54,473 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/terminal_group.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-22T08:09:54,474 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-22T08:09:54,477 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-22T08:09:54,479 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/parser.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-22T08:09:54,481 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-22T08:09:54,482 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-22T08:09:54,484 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-22T08:09:54,487 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-22T08:09:54,489 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-09-22T08:09:54,492 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/constants.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-22T08:09:54,494 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-22T08:09:54,495 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-22T08:09:54,496 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-22T08:09:54,498 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/unimod.json -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-22T08:09:54,526 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-22T08:09:54,529 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-22T08:09:54,532 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-09-22T08:09:54,533 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/source.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-22T08:09:54,536 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/descriptors.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-22T08:09:54,538 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-22T08:09:54,540 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/target.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-22T08:09:54,543 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-22T08:09:54,545 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-22T08:09:54,547 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/rule.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-22T08:09:54,550 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/glycosylation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-09-22T08:09:54,553 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-22T08:09:54,556 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-22T08:09:54,558 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-22T08:09:54,560 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-22T08:09:54,563 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-22T08:09:54,566 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-22T08:09:54,568 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/implementation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-09-22T08:09:54,571 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-22T08:09:54,573 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-22T08:09:54,575 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-09-22T08:09:54,577 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/algorithm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-22T08:09:54,581 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-22T08:09:54,582 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/sequence_test_suite.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-22T08:09:54,585 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-09-22T08:09:54,587 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-22T08:09:54,589 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/version.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-22T08:09:54,591 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-09-22T08:09:54,593 running install_egg_info 2023-09-22T08:09:54,606 Copying src/glycopeptidepy.egg-info to build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.25-py3.11.egg-info 2023-09-22T08:09:54,618 running install_scripts 2023-09-22T08:09:54,685 creating build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.25.dist-info/WHEEL 2023-09-22T08:09:54,689 creating '/tmp/pip-wheel-gmbj7xum/.tmp-8wukvhqc/glycopeptidepy-0.0.25-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-22T08:09:54,693 adding 'glycopeptidepy/__init__.py' 2023-09-22T08:09:54,697 adding 'glycopeptidepy/algorithm.py' 2023-09-22T08:09:54,700 adding 'glycopeptidepy/enzyme.py' 2023-09-22T08:09:54,702 adding 'glycopeptidepy/version.py' 2023-09-22T08:09:54,705 adding 'glycopeptidepy/_c/__init__.py' 2023-09-22T08:09:54,771 adding 'glycopeptidepy/_c/algorithm.c' 2023-09-22T08:09:54,922 adding 'glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so' 2023-09-22T08:09:54,930 adding 'glycopeptidepy/_c/algorithm.pyx' 2023-09-22T08:09:54,967 adding 'glycopeptidepy/_c/collectiontools.c' 2023-09-22T08:09:55,042 adding 'glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so' 2023-09-22T08:09:55,046 adding 'glycopeptidepy/_c/collectiontools.pxd' 2023-09-22T08:09:55,047 adding 'glycopeptidepy/_c/collectiontools.pyx' 2023-09-22T08:09:55,049 adding 'glycopeptidepy/_c/compat.h' 2023-09-22T08:09:55,051 adding 'glycopeptidepy/_c/compat.pxd' 2023-09-22T08:09:55,118 adding 'glycopeptidepy/_c/count_table.c' 2023-09-22T08:09:55,275 adding 'glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so' 2023-09-22T08:09:55,282 adding 'glycopeptidepy/_c/count_table.pxd' 2023-09-22T08:09:55,286 adding 'glycopeptidepy/_c/count_table.pyx' 2023-09-22T08:09:55,287 adding 'glycopeptidepy/_c/cythonize.py' 2023-09-22T08:09:55,331 adding 'glycopeptidepy/_c/parser.c' 2023-09-22T08:09:55,416 adding 'glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so' 2023-09-22T08:09:55,421 adding 'glycopeptidepy/_c/parser.pxd' 2023-09-22T08:09:55,423 adding 'glycopeptidepy/_c/parser.pyx' 2023-09-22T08:09:55,425 adding 'glycopeptidepy/_c/structure/__init__.py' 2023-09-22T08:09:55,500 adding 'glycopeptidepy/_c/structure/base.c' 2023-09-22T08:09:55,709 adding 'glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so' 2023-09-22T08:09:55,718 adding 'glycopeptidepy/_c/structure/base.pxd' 2023-09-22T08:09:55,721 adding 'glycopeptidepy/_c/structure/base.pyx' 2023-09-22T08:09:55,754 adding 'glycopeptidepy/_c/structure/constants.c' 2023-09-22T08:09:55,824 adding 'glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so' 2023-09-22T08:09:55,828 adding 'glycopeptidepy/_c/structure/constants.pxd' 2023-09-22T08:09:55,829 adding 'glycopeptidepy/_c/structure/constants.pyx' 2023-09-22T08:09:55,940 adding 'glycopeptidepy/_c/structure/fragment.c' 2023-09-22T08:09:56,251 adding 'glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so' 2023-09-22T08:09:56,264 adding 'glycopeptidepy/_c/structure/fragment.pxd' 2023-09-22T08:09:56,267 adding 'glycopeptidepy/_c/structure/fragment.pyx' 2023-09-22T08:09:56,341 adding 'glycopeptidepy/_c/structure/glycan.c' 2023-09-22T08:09:56,556 adding 'glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so' 2023-09-22T08:09:56,565 adding 'glycopeptidepy/_c/structure/glycan.pxd' 2023-09-22T08:09:56,567 adding 'glycopeptidepy/_c/structure/glycan.pyx' 2023-09-22T08:09:56,640 adding 'glycopeptidepy/_c/structure/sequence_methods.c' 2023-09-22T08:09:56,832 adding 'glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so' 2023-09-22T08:09:56,840 adding 'glycopeptidepy/_c/structure/sequence_methods.pxd' 2023-09-22T08:09:56,843 adding 'glycopeptidepy/_c/structure/sequence_methods.pyx' 2023-09-22T08:09:56,845 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py' 2023-09-22T08:09:56,887 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.c' 2023-09-22T08:09:56,975 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so' 2023-09-22T08:09:56,980 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd' 2023-09-22T08:09:56,981 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx' 2023-09-22T08:09:57,088 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c' 2023-09-22T08:09:57,380 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so' 2023-09-22T08:09:57,392 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd' 2023-09-22T08:09:57,396 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx' 2023-09-22T08:09:57,545 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c' 2023-09-22T08:09:57,951 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so' 2023-09-22T08:09:57,967 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd' 2023-09-22T08:09:57,970 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx' 2023-09-22T08:09:57,972 adding 'glycopeptidepy/_c/structure/modification/__init__.py' 2023-09-22T08:09:58,011 adding 'glycopeptidepy/_c/structure/modification/modification.c' 2023-09-22T08:09:58,099 adding 'glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so' 2023-09-22T08:09:58,103 adding 'glycopeptidepy/_c/structure/modification/modification.pxd' 2023-09-22T08:09:58,105 adding 'glycopeptidepy/_c/structure/modification/modification.pyx' 2023-09-22T08:09:58,157 adding 'glycopeptidepy/_c/structure/modification/rule.c' 2023-09-22T08:09:58,289 adding 'glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so' 2023-09-22T08:09:58,295 adding 'glycopeptidepy/_c/structure/modification/rule.pxd' 2023-09-22T08:09:58,297 adding 'glycopeptidepy/_c/structure/modification/rule.pyx' 2023-09-22T08:09:58,338 adding 'glycopeptidepy/_c/structure/modification/source.c' 2023-09-22T08:09:58,428 adding 'glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so' 2023-09-22T08:09:58,432 adding 'glycopeptidepy/_c/structure/modification/source.pxd' 2023-09-22T08:09:58,433 adding 'glycopeptidepy/_c/structure/modification/source.pyx' 2023-09-22T08:09:58,434 adding 'glycopeptidepy/_c/structure/modification/target.pyx' 2023-09-22T08:09:58,436 adding 'glycopeptidepy/io/__init__.py' 2023-09-22T08:09:58,438 adding 'glycopeptidepy/io/annotation.py' 2023-09-22T08:09:58,442 adding 'glycopeptidepy/io/fasta.py' 2023-09-22T08:09:58,444 adding 'glycopeptidepy/io/mzid.py' 2023-09-22T08:09:58,445 adding 'glycopeptidepy/io/nextprot.py' 2023-09-22T08:09:58,448 adding 'glycopeptidepy/io/uniprot.py' 2023-09-22T08:09:58,449 adding 'glycopeptidepy/io/utils.py' 2023-09-22T08:09:58,451 adding 'glycopeptidepy/io/cv/__init__.py' 2023-09-22T08:09:58,453 adding 'glycopeptidepy/io/cv/peff.py' 2023-09-22T08:09:58,454 adding 'glycopeptidepy/io/cv/term.py' 2023-09-22T08:09:58,455 adding 'glycopeptidepy/io/cv/uniprot_ptm.py' 2023-09-22T08:09:58,457 adding 'glycopeptidepy/io/cv/data/__init__.py' 2023-09-22T08:09:58,459 adding 'glycopeptidepy/structure/__init__.py' 2023-09-22T08:09:58,460 adding 'glycopeptidepy/structure/base.py' 2023-09-22T08:09:58,461 adding 'glycopeptidepy/structure/composition.py' 2023-09-22T08:09:58,462 adding 'glycopeptidepy/structure/constants.py' 2023-09-22T08:09:58,465 adding 'glycopeptidepy/structure/fragment.py' 2023-09-22T08:09:58,467 adding 'glycopeptidepy/structure/glycan.py' 2023-09-22T08:09:58,468 adding 'glycopeptidepy/structure/parser.py' 2023-09-22T08:09:58,470 adding 'glycopeptidepy/structure/residue.py' 2023-09-22T08:09:58,472 adding 'glycopeptidepy/structure/sequence_composition.py' 2023-09-22T08:09:58,474 adding 'glycopeptidepy/structure/terminal_group.py' 2023-09-22T08:09:58,475 adding 'glycopeptidepy/structure/fragmentation_strategy/__init__.py' 2023-09-22T08:09:58,476 adding 'glycopeptidepy/structure/fragmentation_strategy/base.py' 2023-09-22T08:09:58,481 adding 'glycopeptidepy/structure/fragmentation_strategy/glycan.py' 2023-09-22T08:09:58,484 adding 'glycopeptidepy/structure/fragmentation_strategy/peptide.py' 2023-09-22T08:09:58,485 adding 'glycopeptidepy/structure/modification/__init__.py' 2023-09-22T08:09:58,487 adding 'glycopeptidepy/structure/modification/descriptors.py' 2023-09-22T08:09:58,489 adding 'glycopeptidepy/structure/modification/glycosylation.py' 2023-09-22T08:09:58,490 adding 'glycopeptidepy/structure/modification/modification.py' 2023-09-22T08:09:58,493 adding 'glycopeptidepy/structure/modification/rule.py' 2023-09-22T08:09:58,496 adding 'glycopeptidepy/structure/modification/source.py' 2023-09-22T08:09:58,498 adding 'glycopeptidepy/structure/modification/target.py' 2023-09-22T08:09:58,499 adding 'glycopeptidepy/structure/modification/utils.py' 2023-09-22T08:09:58,501 adding 'glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv' 2023-09-22T08:09:58,502 adding 'glycopeptidepy/structure/modification/data/__init__.py' 2023-09-22T08:09:58,503 adding 'glycopeptidepy/structure/modification/data/patch_unimod.py' 2023-09-22T08:09:58,567 adding 'glycopeptidepy/structure/modification/data/unimod.json' 2023-09-22T08:09:58,584 adding 'glycopeptidepy/structure/modification/data/unimod.py' 2023-09-22T08:09:58,586 adding 'glycopeptidepy/structure/sequence/__init__.py' 2023-09-22T08:09:58,588 adding 'glycopeptidepy/structure/sequence/base.py' 2023-09-22T08:09:58,589 adding 'glycopeptidepy/structure/sequence/glycosylated_sequence.py' 2023-09-22T08:09:58,591 adding 'glycopeptidepy/structure/sequence/implementation.py' 2023-09-22T08:09:58,593 adding 'glycopeptidepy/structure/sequence/mutable_sequence.py' 2023-09-22T08:09:58,594 adding 'glycopeptidepy/test/__init__.py' 2023-09-22T08:09:58,596 adding 'glycopeptidepy/test/sequence_test_suite.py' 2023-09-22T08:09:58,598 adding 'glycopeptidepy/utils/__init__.py' 2023-09-22T08:09:58,599 adding 'glycopeptidepy/utils/collectiontools.py' 2023-09-22T08:09:58,601 adding 'glycopeptidepy/utils/intervals.py' 2023-09-22T08:09:58,603 adding 'glycopeptidepy/utils/iterators.py' 2023-09-22T08:09:58,604 adding 'glycopeptidepy/utils/memoize.py' 2023-09-22T08:09:58,605 adding 'glycopeptidepy/utils/sequence_tree.py' 2023-09-22T08:09:58,607 adding 'glycopeptidepy-0.0.25.dist-info/METADATA' 2023-09-22T08:09:58,608 adding 'glycopeptidepy-0.0.25.dist-info/WHEEL' 2023-09-22T08:09:58,609 adding 'glycopeptidepy-0.0.25.dist-info/top_level.txt' 2023-09-22T08:09:58,612 adding 'glycopeptidepy-0.0.25.dist-info/RECORD' 2023-09-22T08:09:58,680 removing build/bdist.linux-armv7l/wheel 2023-09-22T08:09:58,871 Building wheel for glycopeptidepy (pyproject.toml): finished with status 'done' 2023-09-22T08:09:59,014 Created wheel for glycopeptidepy: filename=glycopeptidepy-0.0.25-cp311-cp311-linux_armv7l.whl size=6684430 sha256=484c7edbebe08876995f0cdb39039470c332ceab495cceb9ac3e291078705c75 2023-09-22T08:09:59,015 Stored in directory: /tmp/pip-ephem-wheel-cache-popocokr/wheels/bf/04/02/91b7f36df384a7a33eb87a732907b6f8ed92c418affb553aa6 2023-09-22T08:09:59,030 Successfully built glycopeptidepy 2023-09-22T08:09:59,195 Removed build tracker: '/tmp/pip-build-tracker-nrr2a9z8'