2023-09-22T15:19:07,649 Created temporary directory: /tmp/pip-build-tracker-ceicsh7n 2023-09-22T15:19:07,650 Initialized build tracking at /tmp/pip-build-tracker-ceicsh7n 2023-09-22T15:19:07,650 Created build tracker: /tmp/pip-build-tracker-ceicsh7n 2023-09-22T15:19:07,651 Entered build tracker: /tmp/pip-build-tracker-ceicsh7n 2023-09-22T15:19:07,651 Created temporary directory: /tmp/pip-wheel-httfa868 2023-09-22T15:19:07,654 Created temporary directory: /tmp/pip-ephem-wheel-cache-d7liq1qq 2023-09-22T15:19:07,676 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-22T15:19:07,680 2 location(s) to search for versions of pgenlib: 2023-09-22T15:19:07,680 * https://pypi.org/simple/pgenlib/ 2023-09-22T15:19:07,680 * https://www.piwheels.org/simple/pgenlib/ 2023-09-22T15:19:07,681 Fetching project page and analyzing links: https://pypi.org/simple/pgenlib/ 2023-09-22T15:19:07,681 Getting page https://pypi.org/simple/pgenlib/ 2023-09-22T15:19:07,683 Found index url https://pypi.org/simple/ 2023-09-22T15:19:07,945 Fetched page https://pypi.org/simple/pgenlib/ as application/vnd.pypi.simple.v1+json 2023-09-22T15:19:07,955 Found link https://files.pythonhosted.org/packages/d9/cc/f3bbaa8da897e9a04e1a885183a0c533ba563bb3a1dbfba6680704473336/Pgenlib-0.81.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.1 2023-09-22T15:19:07,955 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/22/06/d83bcf26ea2212baccc88b3771c78dce0eff643a1293aa3f8993c242fe02/Pgenlib-0.81.2-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,956 Found link https://files.pythonhosted.org/packages/6d/f7/c286a64ec213ea42bfa67b20ce1271b0b8699ac3880854657f8ed1620759/Pgenlib-0.81.2.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.2 2023-09-22T15:19:07,957 Found link https://files.pythonhosted.org/packages/38/09/74ec09b0c9ddde6a3562898507b99b47adde5350248f2899b59edcc082b0/Pgenlib-0.81.3.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.3 2023-09-22T15:19:07,958 Found link https://files.pythonhosted.org/packages/29/d3/311512e956d1bc898cd6020e15691e2778e1bf3a1c2e01eadbb6031d8bd5/Pgenlib-0.82.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.82.0 2023-09-22T15:19:07,959 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/2b/91/1d7b72b61c624763fc29c3e54df394bc611080a3dc2176af2332257e8fac/Pgenlib-0.82.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,959 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/30/d1/166d130225f03033df8ca688ef54dca200fb3de3419f0edc914afd21a3a7/Pgenlib-0.82.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,960 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/be/d5/85dc2412def8644cccfafe6722e7d1c5411c9725366156eef4aec843ba95/Pgenlib-0.82.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,960 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/a1/74/ade2137ac2eee449bfa959f5808cc6d1bdc6cec4cd9b4fabcd416246a889/Pgenlib-0.82.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,961 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/9a/65/79600073fc41faaa2b008b1bedf9233125aeaad404a973e563810268a626/Pgenlib-0.82.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,962 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/29/20/876e704d95b3ca26e7a554532385d52f2133cd99d2f132a29fb16062cb4d/Pgenlib-0.82.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,962 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b5/32/8dbf9cb1a3a3a6950deab99e0515a753273396ef1770b5d2491e1f8eaba9/Pgenlib-0.82.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,963 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/fc/24/2e6994141f63fd6c129b0bd0bbc9ef8df91e98b171a5ae0a5aeb7a01532c/Pgenlib-0.82.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,963 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/54/8e/3a2eef4571d6d2c8604a3810c3e092c9e145839934dde6c91ecf4be63be8/Pgenlib-0.82.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,964 Found link https://files.pythonhosted.org/packages/9b/d1/73c8eb879691b5ef443cf3c26e801590a7eac657264f80538c7541266fa8/Pgenlib-0.82.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.82.1 2023-09-22T15:19:07,965 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/95/0a/86ce9fc2291a83b63817ac43b8f2924af9c02746b4f20c44142ce9f8a4ce/Pgenlib-0.83.0-cp310-cp310-macosx_13_0_arm64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,965 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/54/73/924728769d9bd1e738190588c1ac1c2fc53d65641565c013ac1d79fe8403/Pgenlib-0.83.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,966 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/3b/22/29e510423558b22e98374496ef7c8b178c5f4d47f6e9c1fe4999c6ee8761/Pgenlib-0.83.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,966 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/7c/a9/5987776baf730f0f8e8b44b7c358f8b2b44cb24f9fa938b9f6dcb8724f69/Pgenlib-0.83.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,967 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/88/64/2df132fbea4b3aad80aab161c90e9f24e5d494917605b1f01f522950d07e/Pgenlib-0.83.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,967 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/02/4e/df2808d3f87f77419e0abb68544f0f220c261a7eed6433c7150eff1fec49/Pgenlib-0.83.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,968 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/c1/14/00aaf84a05ae9b25f51af36f285614e42c557860051fe16ef0860b03b3c6/Pgenlib-0.83.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,968 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b7/a8/832b27db6e563e46c40e59714a0adf09959d67d964feb5ef84b51f89a0b9/Pgenlib-0.83.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,969 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/5b/ba/ba9401daf559588f84aa8ff82b55ce1aac6339a69028a3b14748af74539f/Pgenlib-0.83.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,969 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b6/d7/6cf098fd410209d749e41610daeb12b440ea603a45f787a49474461c6043/Pgenlib-0.83.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,971 Found link https://files.pythonhosted.org/packages/b5/f4/6cd16a7f543438c5910cec68bd5d49d231152753f3f53f4dda1322305522/Pgenlib-0.83.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.83.0 2023-09-22T15:19:07,971 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/16/24/5e5f3f751fc014e67c567073089e5ff22887c890ddcb33b2eee234b2ff66/Pgenlib-0.90.0-cp310-cp310-macosx_13_0_arm64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,972 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/43/45/b23b200529cc05e27de60c6623e3c272f3babacd46ba7ca04f8ba8cee212/Pgenlib-0.90.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,972 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/95/af/14f03aa5e6568810347aef280eb57b82a5a45e03f33c9653d56685a5157c/Pgenlib-0.90.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,972 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/59/d6/7157c61da0ebb0d2f05ba178ef1c57e567054192e47153ea29952de377c9/Pgenlib-0.90.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,973 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/4b/62/3d03109e3a79b4981cde01c00f7d63b2f850599d3b4c06125e0561b0dbd7/Pgenlib-0.90.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,973 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/7f/75/03cbd46f9f1cb21c22745c4548f85b5e548b1e5a5cbb4d69064f111c3f77/Pgenlib-0.90.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,974 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/da/25/eef614e9ea13964aed3aa93211d44fc0a53591fe59901def7f0842c26259/Pgenlib-0.90.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,974 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/f3/b0/01e1c04e3fe156252d1ebb82f362da5642a128d72c5a67c481b26986d450/Pgenlib-0.90.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,975 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/05/cc/185166c604f18f1d60291fd0d407d6c02b26e712af8e39bfaabfe9be57ce/Pgenlib-0.90.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,975 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/45/60/dd584321eedc419f7b1aee92fc15110070714ca949ee012bf5dddffec6cf/Pgenlib-0.90.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,976 Found link https://files.pythonhosted.org/packages/dc/26/3150424408411a6f326db5b2f61a5accf900dfe3d287f4452e73d62b0b01/Pgenlib-0.90.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.90.0 2023-09-22T15:19:07,977 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/0a/24/eb4944605bf1ad5142466d268aac02ca2c1e57242511578ae521c3427e77/Pgenlib-0.90.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,978 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/47/c5/b8acab2c2db8acbf153d4e1284236838d31c0f17df797f04f15686e5f15d/Pgenlib-0.90.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,978 Skipping link: No binaries permitted for pgenlib: 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https://files.pythonhosted.org/packages/c3/c3/30647c9cbafe729c786891bb3c873535bf8d667fb6b218642ada95738517/Pgenlib-0.90.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:07,982 Found link https://files.pythonhosted.org/packages/75/02/d5151e065fd355fc365adf472017db0f25f199f5a550df1d4bb9808ba67d/Pgenlib-0.90.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.90.1 2023-09-22T15:19:07,983 Fetching project page and analyzing links: https://www.piwheels.org/simple/pgenlib/ 2023-09-22T15:19:07,984 Getting page https://www.piwheels.org/simple/pgenlib/ 2023-09-22T15:19:07,985 Found index url https://www.piwheels.org/simple/ 2023-09-22T15:19:08,147 Fetched page https://www.piwheels.org/simple/pgenlib/ as text/html 2023-09-22T15:19:08,153 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.1-cp39-cp39-linux_armv7l.whl#sha256=e603ad759fc12e178a3c2d3fb74b25cbb9d9ffcaf1d24dfac70f02101dab2684 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:08,154 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.1-cp39-cp39-linux_armv6l.whl#sha256=e603ad759fc12e178a3c2d3fb74b25cbb9d9ffcaf1d24dfac70f02101dab2684 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:08,154 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.0-cp39-cp39-linux_armv7l.whl#sha256=3893959a4ddc9a66babc9c59a168b24d56baa0b009e29e55873dd5640e4607fd (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:08,155 Skipping link: No binaries permitted for pgenlib: 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https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.1-cp39-cp39-linux_armv7l.whl#sha256=7f2cd443fbc7956edef6af632c8b31dc2b48cd9cca92bacece82495cdff52291 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:08,157 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.1-cp39-cp39-linux_armv6l.whl#sha256=7f2cd443fbc7956edef6af632c8b31dc2b48cd9cca92bacece82495cdff52291 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:08,157 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.0-cp39-cp39-linux_armv7l.whl#sha256=b38d7233c5515f730969499da3b95e95f64109573755cdda562026109c999c33 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:08,158 Skipping link: No binaries permitted for pgenlib: 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https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.2-cp39-cp39-linux_armv6l.whl#sha256=2e0ad339664cbc60a4ae0b3a935afcf56d3e1a344387d8327ae50b03dce0d852 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:08,161 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.1-cp39-cp39-linux_armv7l.whl#sha256=7fe4ecefc0464d30dc029a926937523d919f28fa0320e6522fa229764a168909 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:08,162 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.1-cp39-cp39-linux_armv6l.whl#sha256=7fe4ecefc0464d30dc029a926937523d919f28fa0320e6522fa229764a168909 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:08,162 Skipping link: not a file: https://www.piwheels.org/simple/pgenlib/ 2023-09-22T15:19:08,163 Skipping link: not a file: https://pypi.org/simple/pgenlib/ 2023-09-22T15:19:08,182 Given no hashes to check 1 links for project 'pgenlib': discarding no candidates 2023-09-22T15:19:08,200 Collecting pgenlib==0.82.0 2023-09-22T15:19:08,202 Created temporary directory: /tmp/pip-unpack-qkk6yz7i 2023-09-22T15:19:08,419 Downloading Pgenlib-0.82.0.tar.gz (387 kB) 2023-09-22T15:19:08,670 Added pgenlib==0.82.0 from https://files.pythonhosted.org/packages/29/d3/311512e956d1bc898cd6020e15691e2778e1bf3a1c2e01eadbb6031d8bd5/Pgenlib-0.82.0.tar.gz to build tracker '/tmp/pip-build-tracker-ceicsh7n' 2023-09-22T15:19:08,677 Created temporary directory: /tmp/pip-build-env-hlj9gkho 2023-09-22T15:19:08,681 Installing build dependencies: started 2023-09-22T15:19:08,682 Running command pip subprocess to install build dependencies 2023-09-22T15:19:09,843 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-22T15:19:10,334 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-22T15:19:11,878 Collecting setuptools 2023-09-22T15:19:11,879 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-22T15:19:11,886 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-22T15:19:12,094 Collecting wheel 2023-09-22T15:19:12,111 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-22T15:19:12,222 Collecting oldest-supported-numpy>=2022.8.16 2023-09-22T15:19:12,238 Using cached https://www.piwheels.org/simple/oldest-supported-numpy/oldest_supported_numpy-2023.8.3-py3-none-any.whl (4.8 kB) 2023-09-22T15:19:13,651 Collecting Cython>=0.29.21 2023-09-22T15:19:13,653 Obtaining dependency information for Cython>=0.29.21 from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata 2023-09-22T15:19:13,658 Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-22T15:19:14,703 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-22T15:19:14,711 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-22T15:19:14,718 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-22T15:19:14,724 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-22T15:19:14,731 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-22T15:19:15,125 Collecting numpy==1.23.2 (from oldest-supported-numpy>=2022.8.16) 2023-09-22T15:19:16,009 Using cached https://www.piwheels.org/simple/numpy/numpy-1.23.2-cp311-cp311-linux_armv7l.whl (12.4 MB) 2023-09-22T15:19:16,410 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-22T15:19:16,452 Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB) 2023-09-22T15:19:19,091 Installing collected packages: wheel, setuptools, numpy, Cython, oldest-supported-numpy 2023-09-22T15:19:19,309 Creating /tmp/pip-build-env-hlj9gkho/overlay/local/bin 2023-09-22T15:19:19,311 changing mode of /tmp/pip-build-env-hlj9gkho/overlay/local/bin/wheel to 755 2023-09-22T15:19:31,748 changing mode of /tmp/pip-build-env-hlj9gkho/overlay/local/bin/f2py to 755 2023-09-22T15:19:31,750 changing mode of /tmp/pip-build-env-hlj9gkho/overlay/local/bin/f2py3 to 755 2023-09-22T15:19:31,752 changing mode of /tmp/pip-build-env-hlj9gkho/overlay/local/bin/f2py3.11 to 755 2023-09-22T15:19:35,959 changing mode of /tmp/pip-build-env-hlj9gkho/overlay/local/bin/cygdb to 755 2023-09-22T15:19:35,963 changing mode of /tmp/pip-build-env-hlj9gkho/overlay/local/bin/cython to 755 2023-09-22T15:19:35,966 changing mode of /tmp/pip-build-env-hlj9gkho/overlay/local/bin/cythonize to 755 2023-09-22T15:19:36,034 Successfully installed Cython-3.0.2 numpy-1.23.2 oldest-supported-numpy-2023.8.3 setuptools-68.2.2 wheel-0.41.2 2023-09-22T15:19:36,679 Installing build dependencies: finished with status 'done' 2023-09-22T15:19:36,683 Getting requirements to build wheel: started 2023-09-22T15:19:36,684 Running command Getting requirements to build wheel 2023-09-22T15:19:44,358 Compiling src/pgenlib/pgenlib.pyx because it changed. 2023-09-22T15:19:44,358 [1/1] Cythonizing src/pgenlib/pgenlib.pyx 2023-09-22T15:19:44,424 running egg_info 2023-09-22T15:19:44,432 writing src/Pgenlib.egg-info/PKG-INFO 2023-09-22T15:19:44,435 writing dependency_links to src/Pgenlib.egg-info/dependency_links.txt 2023-09-22T15:19:44,438 writing top-level names to src/Pgenlib.egg-info/top_level.txt 2023-09-22T15:19:44,458 dependency /tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:44,458 dependency /tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:44,459 dependency /tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:44,460 dependency /tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:44,460 dependency /tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:44,467 reading manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-09-22T15:19:44,470 reading manifest template 'MANIFEST.in' 2023-09-22T15:19:44,473 adding license file 'LICENSE' 2023-09-22T15:19:44,476 writing manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-09-22T15:19:44,865 Getting requirements to build wheel: finished with status 'done' 2023-09-22T15:19:44,874 Created temporary directory: /tmp/pip-modern-metadata-o8bm16zv 2023-09-22T15:19:44,877 Preparing metadata (pyproject.toml): started 2023-09-22T15:19:44,878 Running command Preparing metadata (pyproject.toml) 2023-09-22T15:19:46,347 running dist_info 2023-09-22T15:19:46,369 creating /tmp/pip-modern-metadata-o8bm16zv/Pgenlib.egg-info 2023-09-22T15:19:46,374 writing /tmp/pip-modern-metadata-o8bm16zv/Pgenlib.egg-info/PKG-INFO 2023-09-22T15:19:46,376 writing dependency_links to /tmp/pip-modern-metadata-o8bm16zv/Pgenlib.egg-info/dependency_links.txt 2023-09-22T15:19:46,378 writing top-level names to /tmp/pip-modern-metadata-o8bm16zv/Pgenlib.egg-info/top_level.txt 2023-09-22T15:19:46,380 writing manifest file '/tmp/pip-modern-metadata-o8bm16zv/Pgenlib.egg-info/SOURCES.txt' 2023-09-22T15:19:46,397 dependency /tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:46,397 dependency /tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:46,398 dependency /tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:46,398 dependency /tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:46,399 dependency /tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:46,403 reading manifest file '/tmp/pip-modern-metadata-o8bm16zv/Pgenlib.egg-info/SOURCES.txt' 2023-09-22T15:19:46,405 reading manifest template 'MANIFEST.in' 2023-09-22T15:19:46,407 adding license file 'LICENSE' 2023-09-22T15:19:46,409 writing manifest file '/tmp/pip-modern-metadata-o8bm16zv/Pgenlib.egg-info/SOURCES.txt' 2023-09-22T15:19:46,410 creating '/tmp/pip-modern-metadata-o8bm16zv/Pgenlib-0.82.0.dist-info' 2023-09-22T15:19:46,635 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-22T15:19:46,640 Source in /tmp/pip-wheel-httfa868/pgenlib_70b02447377f44b4924a341d3ed2f67d has version 0.82.0, which satisfies requirement pgenlib==0.82.0 from https://files.pythonhosted.org/packages/29/d3/311512e956d1bc898cd6020e15691e2778e1bf3a1c2e01eadbb6031d8bd5/Pgenlib-0.82.0.tar.gz 2023-09-22T15:19:46,641 Removed pgenlib==0.82.0 from https://files.pythonhosted.org/packages/29/d3/311512e956d1bc898cd6020e15691e2778e1bf3a1c2e01eadbb6031d8bd5/Pgenlib-0.82.0.tar.gz from build tracker '/tmp/pip-build-tracker-ceicsh7n' 2023-09-22T15:19:46,646 Created temporary directory: /tmp/pip-unpack-xvfdo868 2023-09-22T15:19:46,647 Created temporary directory: /tmp/pip-unpack-691lrwgs 2023-09-22T15:19:46,650 Building wheels for collected packages: pgenlib 2023-09-22T15:19:46,654 Created temporary directory: /tmp/pip-wheel-8zw6j6mj 2023-09-22T15:19:46,654 Destination directory: /tmp/pip-wheel-8zw6j6mj 2023-09-22T15:19:46,656 Building wheel for pgenlib (pyproject.toml): started 2023-09-22T15:19:46,657 Running command Building wheel for pgenlib (pyproject.toml) 2023-09-22T15:19:48,106 running bdist_wheel 2023-09-22T15:19:48,152 running build 2023-09-22T15:19:48,153 running build_ext 2023-09-22T15:19:48,158 building 'pgenlib' extension 2023-09-22T15:19:48,159 creating build 2023-09-22T15:19:48,160 creating build/temp.linux-armv7l-cpython-311 2023-09-22T15:19:48,161 creating build/temp.linux-armv7l-cpython-311/src 2023-09-22T15:19:48,161 creating build/temp.linux-armv7l-cpython-311/src/pgenlib 2023-09-22T15:19:48,163 creating build/temp.linux-armv7l-cpython-311/src/plink2 2023-09-22T15:19:48,163 creating build/temp.linux-armv7l-cpython-311/src/plink2/include 2023-09-22T15:19:48,164 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/pgenlib/pgenlib.cpp -o build/temp.linux-armv7l-cpython-311/src/pgenlib/pgenlib.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-22T15:19:48,438 In file included from /tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-22T15:19:48,439 from /tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-22T15:19:48,439 from /tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-22T15:19:48,440 from src/pgenlib/pgenlib.cpp:1208: 2023-09-22T15:19:48,440 /tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-22T15:19:48,441 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-22T15:19:48,441 | ^~~~~~~ 2023-09-22T15:19:48,498 src/pgenlib/pgenlib.cpp:1459: warning: "likely" redefined 2023-09-22T15:19:48,498 1459 | #define likely(x) __builtin_expect(!!(x), 1) 2023-09-22T15:19:48,499 | 2023-09-22T15:19:48,500 In file included from src/pgenlib/../plink2/include/plink2_bits.h:23, 2023-09-22T15:19:48,500 from src/pgenlib/../plink2/include/pgenlib_misc.h:77, 2023-09-22T15:19:48,500 from src/pgenlib/../plink2/pgenlib_ffi_support.h:20, 2023-09-22T15:19:48,501 from src/pgenlib/pgenlib.cpp:1213: 2023-09-22T15:19:48,501 src/pgenlib/../plink2/include/plink2_base.h:252: note: this is the location of the previous definition 2023-09-22T15:19:48,502 252 | # define likely(expr) __builtin_expect(!!(expr), 1) 2023-09-22T15:19:48,502 | 2023-09-22T15:19:48,503 src/pgenlib/pgenlib.cpp:1460: warning: "unlikely" redefined 2023-09-22T15:19:48,503 1460 | #define unlikely(x) __builtin_expect(!!(x), 0) 2023-09-22T15:19:48,504 | 2023-09-22T15:19:48,504 src/pgenlib/../plink2/include/plink2_base.h:253: note: this is the location of the previous definition 2023-09-22T15:19:48,504 253 | # define unlikely(expr) __builtin_expect(!!(expr), 0) 2023-09-22T15:19:48,505 | 2023-09-22T15:19:49,696 src/pgenlib/pgenlib.cpp: In function ‘int __pyx_pw_7pgenlib_10PgenReader_1__cinit__(PyObject*, PyObject*, PyObject*)’: 2023-09-22T15:19:49,696 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,697 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,698 | ^ 2023-09-22T15:19:49,698 src/pgenlib/pgenlib.cpp:6973:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,699 6973 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,699 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,700 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,700 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,701 | ^ 2023-09-22T15:19:49,701 src/pgenlib/pgenlib.cpp:6975:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,702 6975 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,702 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,703 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,704 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,704 | ^ 2023-09-22T15:19:49,704 src/pgenlib/pgenlib.cpp:6977:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,705 6977 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,705 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,706 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,706 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,707 | ^ 2023-09-22T15:19:49,707 src/pgenlib/pgenlib.cpp:6979:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,708 6979 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,708 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,709 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,709 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,710 | ^ 2023-09-22T15:19:49,710 src/pgenlib/pgenlib.cpp:6992:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,711 6992 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,711 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,712 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,712 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,713 | ^ 2023-09-22T15:19:49,713 src/pgenlib/pgenlib.cpp:6999:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,714 6999 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,714 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,715 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,716 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,716 | ^ 2023-09-22T15:19:49,717 src/pgenlib/pgenlib.cpp:7006:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,717 7006 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,718 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,719 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,719 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,720 | ^ 2023-09-22T15:19:49,720 src/pgenlib/pgenlib.cpp:7021:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,721 7021 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,721 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,722 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,723 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,723 | ^ 2023-09-22T15:19:49,724 src/pgenlib/pgenlib.cpp:7023:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,725 7023 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,725 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,726 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,727 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,727 | ^ 2023-09-22T15:19:49,728 src/pgenlib/pgenlib.cpp:7025:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,728 7025 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,729 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,784 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read*)’: 2023-09-22T15:19:49,785 src/pgenlib/pgenlib.cpp:9128:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:49,785 9128 | __pyx_t_8 = ((__pyx_t_10[0]) < __pyx_v_subset_size); 2023-09-22T15:19:49,786 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,808 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_11read(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:49,808 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,809 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,809 | ^ 2023-09-22T15:19:49,810 src/pgenlib/pgenlib.cpp:9484:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,810 9484 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,811 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,811 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,812 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,812 | ^ 2023-09-22T15:19:49,813 src/pgenlib/pgenlib.cpp:9486:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,813 9486 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,814 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,815 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,815 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,816 | ^ 2023-09-22T15:19:49,817 src/pgenlib/pgenlib.cpp:9488:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,817 9488 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,818 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,818 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,819 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,819 | ^ 2023-09-22T15:19:49,820 src/pgenlib/pgenlib.cpp:9501:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,820 9501 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,821 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,822 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,822 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,823 | ^ 2023-09-22T15:19:49,824 src/pgenlib/pgenlib.cpp:9511:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,824 9511 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,825 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,825 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,826 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,826 | ^ 2023-09-22T15:19:49,827 src/pgenlib/pgenlib.cpp:9526:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,827 9526 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,828 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,839 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages*)’: 2023-09-22T15:19:49,840 src/pgenlib/pgenlib.cpp:9819:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:49,840 9819 | __pyx_t_8 = ((__pyx_t_10[0]) < __pyx_v_subset_size); 2023-09-22T15:19:49,841 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,860 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_13read_dosages(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:49,860 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,861 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,861 | ^ 2023-09-22T15:19:49,862 src/pgenlib/pgenlib.cpp:10115:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,862 10115 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,863 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,864 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,864 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,865 | ^ 2023-09-22T15:19:49,865 src/pgenlib/pgenlib.cpp:10117:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,866 10117 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,867 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,867 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,868 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,869 | ^ 2023-09-22T15:19:49,869 src/pgenlib/pgenlib.cpp:10119:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,870 10119 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,870 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,871 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,872 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,872 | ^ 2023-09-22T15:19:49,873 src/pgenlib/pgenlib.cpp:10132:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,874 10132 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,874 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,875 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,876 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,876 | ^ 2023-09-22T15:19:49,877 src/pgenlib/pgenlib.cpp:10142:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,878 10142 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,878 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,879 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,879 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,880 | ^ 2023-09-22T15:19:49,880 src/pgenlib/pgenlib.cpp:10157:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,881 10157 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,881 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,889 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int)’: 2023-09-22T15:19:49,890 src/pgenlib/pgenlib.cpp:10417:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:49,890 10417 | __pyx_t_7 = ((__pyx_t_9[0]) < __pyx_v_subset_size); 2023-09-22T15:19:49,891 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,903 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_15read_alleles(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:49,904 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,905 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,905 | ^ 2023-09-22T15:19:49,906 src/pgenlib/pgenlib.cpp:10632:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,906 10632 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,907 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,907 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,908 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,908 | ^ 2023-09-22T15:19:49,909 src/pgenlib/pgenlib.cpp:10634:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,910 10634 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,910 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,911 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,912 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,913 | ^ 2023-09-22T15:19:49,913 src/pgenlib/pgenlib.cpp:10647:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,914 10647 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,915 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,930 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, PyArrayObject*, int)’: 2023-09-22T15:19:49,931 src/pgenlib/pgenlib.cpp:10945:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:49,932 10945 | __pyx_t_7 = ((__pyx_t_9[0]) < (2 * __pyx_v_subset_size)); 2023-09-22T15:19:49,933 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,937 src/pgenlib/pgenlib.cpp:11003:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:49,937 11003 | __pyx_t_7 = ((__pyx_t_9[0]) < __pyx_v_subset_size); 2023-09-22T15:19:49,939 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,953 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_17read_alleles_and_phasepresent(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:49,954 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,954 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,955 | ^ 2023-09-22T15:19:49,955 src/pgenlib/pgenlib.cpp:11240:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,956 11240 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,956 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,956 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,957 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,957 | ^ 2023-09-22T15:19:49,958 src/pgenlib/pgenlib.cpp:11242:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,958 11242 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,959 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,959 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,960 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,960 | ^ 2023-09-22T15:19:49,961 src/pgenlib/pgenlib.cpp:11244:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,962 11244 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,962 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,963 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,964 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,964 | ^ 2023-09-22T15:19:49,965 src/pgenlib/pgenlib.cpp:11257:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,966 11257 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,966 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,967 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:49,968 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:49,968 | ^ 2023-09-22T15:19:49,969 src/pgenlib/pgenlib.cpp:11267:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:49,970 11267 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:49,970 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,981 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal8(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal8*)’: 2023-09-22T15:19:49,982 src/pgenlib/pgenlib.cpp:11546:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:49,983 11546 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:49,983 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:49,988 src/pgenlib/pgenlib.cpp:11604:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:49,989 11604 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2023-09-22T15:19:49,989 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,001 src/pgenlib/pgenlib.cpp:11831:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,002 11831 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_subset_size); 2023-09-22T15:19:50,002 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,007 src/pgenlib/pgenlib.cpp:11889:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,007 11889 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,008 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,027 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal32(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal32*)’: 2023-09-22T15:19:50,027 src/pgenlib/pgenlib.cpp:12491:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,028 12491 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,028 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,032 src/pgenlib/pgenlib.cpp:12549:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,033 12549 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2023-09-22T15:19:50,034 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,046 src/pgenlib/pgenlib.cpp:12776:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,046 12776 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_subset_size); 2023-09-22T15:19:50,047 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,051 src/pgenlib/pgenlib.cpp:12834:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,052 12834 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,052 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,071 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal64(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal64*)’: 2023-09-22T15:19:50,071 src/pgenlib/pgenlib.cpp:13436:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,072 13436 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,073 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,077 src/pgenlib/pgenlib.cpp:13494:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,077 13494 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2023-09-22T15:19:50,078 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,090 src/pgenlib/pgenlib.cpp:13721:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,091 13721 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_subset_size); 2023-09-22T15:19:50,091 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,096 src/pgenlib/pgenlib.cpp:13779:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,096 13779 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,097 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,137 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_19read_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:50,138 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,138 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,139 | ^ 2023-09-22T15:19:50,139 src/pgenlib/pgenlib.cpp:14628:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,140 14628 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,140 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,141 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,141 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,142 | ^ 2023-09-22T15:19:50,142 src/pgenlib/pgenlib.cpp:14630:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,143 14630 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,143 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,144 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,144 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,145 | ^ 2023-09-22T15:19:50,146 src/pgenlib/pgenlib.cpp:14632:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,146 14632 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,147 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,147 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,148 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,149 | ^ 2023-09-22T15:19:50,149 src/pgenlib/pgenlib.cpp:14634:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,150 14634 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,150 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,151 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,151 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,152 | ^ 2023-09-22T15:19:50,152 src/pgenlib/pgenlib.cpp:14636:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,153 14636 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,154 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,154 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,155 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,156 | ^ 2023-09-22T15:19:50,156 src/pgenlib/pgenlib.cpp:14649:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,157 14649 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,157 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,158 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,158 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,158 | ^ 2023-09-22T15:19:50,159 src/pgenlib/pgenlib.cpp:14659:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,159 14659 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,160 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,160 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,161 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,161 | ^ 2023-09-22T15:19:50,162 src/pgenlib/pgenlib.cpp:14669:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,162 14669 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,163 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,163 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,164 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,164 | ^ 2023-09-22T15:19:50,165 src/pgenlib/pgenlib.cpp:14676:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,165 14676 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,166 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,166 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,167 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,167 | ^ 2023-09-22T15:19:50,168 src/pgenlib/pgenlib.cpp:14691:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,168 14691 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,169 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,169 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,170 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,171 | ^ 2023-09-22T15:19:50,171 src/pgenlib/pgenlib.cpp:14693:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,172 14693 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,173 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,182 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal8(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal8*)’: 2023-09-22T15:19:50,183 src/pgenlib/pgenlib.cpp:14961:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,183 14961 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,184 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,188 src/pgenlib/pgenlib.cpp:15019:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,189 15019 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_subset_size); 2023-09-22T15:19:50,190 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,203 src/pgenlib/pgenlib.cpp:15262:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,204 15262 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_subset_size); 2023-09-22T15:19:50,204 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,215 src/pgenlib/pgenlib.cpp:15320:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,216 15320 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,216 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,243 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal32(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal32*)’: 2023-09-22T15:19:50,243 src/pgenlib/pgenlib.cpp:16019:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,244 16019 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,244 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,249 src/pgenlib/pgenlib.cpp:16077:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,249 16077 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_subset_size); 2023-09-22T15:19:50,250 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,263 src/pgenlib/pgenlib.cpp:16320:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,263 16320 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_subset_size); 2023-09-22T15:19:50,264 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,269 src/pgenlib/pgenlib.cpp:16378:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,269 16378 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,270 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,295 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal64(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal64*)’: 2023-09-22T15:19:50,296 src/pgenlib/pgenlib.cpp:17077:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,297 17077 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,297 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,301 src/pgenlib/pgenlib.cpp:17135:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,302 17135 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_subset_size); 2023-09-22T15:19:50,303 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,316 src/pgenlib/pgenlib.cpp:17378:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,316 17378 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_subset_size); 2023-09-22T15:19:50,317 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,322 src/pgenlib/pgenlib.cpp:17436:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,322 17436 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,323 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,365 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_21read_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:50,365 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,366 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,366 | ^ 2023-09-22T15:19:50,366 src/pgenlib/pgenlib.cpp:18312:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,367 18312 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,367 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,368 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,368 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,369 | ^ 2023-09-22T15:19:50,369 src/pgenlib/pgenlib.cpp:18314:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,370 18314 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,370 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,371 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,372 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,372 | ^ 2023-09-22T15:19:50,373 src/pgenlib/pgenlib.cpp:18316:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,374 18316 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,374 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,375 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,376 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,376 | ^ 2023-09-22T15:19:50,377 src/pgenlib/pgenlib.cpp:18318:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,378 18318 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,378 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,379 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,379 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,380 | ^ 2023-09-22T15:19:50,380 src/pgenlib/pgenlib.cpp:18331:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,381 18331 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,382 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,382 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,383 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,384 | ^ 2023-09-22T15:19:50,384 src/pgenlib/pgenlib.cpp:18341:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,385 18341 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,386 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,387 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,387 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,388 | ^ 2023-09-22T15:19:50,388 src/pgenlib/pgenlib.cpp:18348:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,388 18348 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,389 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,390 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,391 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,391 | ^ 2023-09-22T15:19:50,392 src/pgenlib/pgenlib.cpp:18363:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,392 18363 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,393 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,394 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,395 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,395 | ^ 2023-09-22T15:19:50,396 src/pgenlib/pgenlib.cpp:18365:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,396 18365 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,397 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,416 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_range(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_range*)’: 2023-09-22T15:19:50,416 src/pgenlib/pgenlib.cpp:18788:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,417 18788 | __pyx_t_9 = ((__pyx_t_14[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,418 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,422 src/pgenlib/pgenlib.cpp:18846:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,423 18846 | __pyx_t_9 = ((__pyx_t_14[1]) < (2 * __pyx_v_subset_size)); 2023-09-22T15:19:50,424 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,437 src/pgenlib/pgenlib.cpp:19085:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,438 19085 | __pyx_t_9 = ((__pyx_t_14[0]) < (2 * __pyx_v_subset_size)); 2023-09-22T15:19:50,439 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,444 src/pgenlib/pgenlib.cpp:19143:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,444 19143 | __pyx_t_9 = ((__pyx_t_14[1]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,445 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,470 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_23read_alleles_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:50,471 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,472 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,472 | ^ 2023-09-22T15:19:50,473 src/pgenlib/pgenlib.cpp:19809:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,473 19809 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,474 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,474 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,475 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,475 | ^ 2023-09-22T15:19:50,476 src/pgenlib/pgenlib.cpp:19811:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,476 19811 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,476 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,477 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,477 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,478 | ^ 2023-09-22T15:19:50,478 src/pgenlib/pgenlib.cpp:19813:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,479 19813 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,479 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,480 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,480 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,481 | ^ 2023-09-22T15:19:50,481 src/pgenlib/pgenlib.cpp:19815:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,482 19815 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,483 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,484 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,484 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,485 | ^ 2023-09-22T15:19:50,486 src/pgenlib/pgenlib.cpp:19828:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,486 19828 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,487 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,488 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,488 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,489 | ^ 2023-09-22T15:19:50,489 src/pgenlib/pgenlib.cpp:19838:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,490 19838 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,490 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,491 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,492 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,492 | ^ 2023-09-22T15:19:50,493 src/pgenlib/pgenlib.cpp:19848:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,494 19848 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,494 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,495 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,496 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,497 | ^ 2023-09-22T15:19:50,498 src/pgenlib/pgenlib.cpp:19863:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,498 19863 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,498 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,513 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_list(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_list*)’: 2023-09-22T15:19:50,514 src/pgenlib/pgenlib.cpp:20240:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,514 20240 | __pyx_t_12 = ((__pyx_t_11[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,515 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,519 src/pgenlib/pgenlib.cpp:20298:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,520 20298 | __pyx_t_12 = ((__pyx_t_11[1]) < (2 * __pyx_v_subset_size)); 2023-09-22T15:19:50,520 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,534 src/pgenlib/pgenlib.cpp:20541:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,534 20541 | __pyx_t_12 = ((__pyx_t_11[0]) < (2 * __pyx_v_subset_size)); 2023-09-22T15:19:50,535 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,540 src/pgenlib/pgenlib.cpp:20599:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,541 20599 | __pyx_t_12 = ((__pyx_t_11[1]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,541 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,570 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_25read_alleles_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:50,570 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,571 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,571 | ^ 2023-09-22T15:19:50,572 src/pgenlib/pgenlib.cpp:21306:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,573 21306 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,573 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,574 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,574 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,575 | ^ 2023-09-22T15:19:50,575 src/pgenlib/pgenlib.cpp:21308:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,576 21308 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,576 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,578 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,578 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,579 | ^ 2023-09-22T15:19:50,580 src/pgenlib/pgenlib.cpp:21310:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,580 21310 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,581 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,583 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,583 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,584 | ^ 2023-09-22T15:19:50,584 src/pgenlib/pgenlib.cpp:21323:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,585 21323 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,585 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,587 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,588 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,588 | ^ 2023-09-22T15:19:50,589 src/pgenlib/pgenlib.cpp:21333:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,589 21333 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,590 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,592 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,593 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,593 | ^ 2023-09-22T15:19:50,594 src/pgenlib/pgenlib.cpp:21348:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,594 21348 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,595 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,615 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent_range(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_and_phasepresent_range*)’: 2023-09-22T15:19:50,615 src/pgenlib/pgenlib.cpp:21761:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,616 21761 | __pyx_t_9 = ((__pyx_t_14[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,617 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,621 src/pgenlib/pgenlib.cpp:21819:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,622 21819 | __pyx_t_9 = ((__pyx_t_14[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,623 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,627 src/pgenlib/pgenlib.cpp:21877:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,628 21877 | __pyx_t_9 = ((__pyx_t_14[1]) < (2 * __pyx_v_subset_size)); 2023-09-22T15:19:50,629 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,633 src/pgenlib/pgenlib.cpp:21935:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,634 21935 | __pyx_t_9 = ((__pyx_t_14[1]) < __pyx_v_subset_size); 2023-09-22T15:19:50,635 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,660 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_27read_alleles_and_phasepresent_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:50,661 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,662 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,663 | ^ 2023-09-22T15:19:50,663 src/pgenlib/pgenlib.cpp:22227:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,663 22227 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,664 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,664 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,665 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,665 | ^ 2023-09-22T15:19:50,666 src/pgenlib/pgenlib.cpp:22229:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,666 22229 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,666 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,668 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,668 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,669 | ^ 2023-09-22T15:19:50,669 src/pgenlib/pgenlib.cpp:22231:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,670 22231 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,670 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,671 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,672 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,672 | ^ 2023-09-22T15:19:50,673 src/pgenlib/pgenlib.cpp:22233:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,674 22233 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,674 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,675 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,676 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,676 | ^ 2023-09-22T15:19:50,677 src/pgenlib/pgenlib.cpp:22235:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,678 22235 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,678 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,679 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,680 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,681 | ^ 2023-09-22T15:19:50,681 src/pgenlib/pgenlib.cpp:22248:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,682 22248 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,682 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,684 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,685 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,685 | ^ 2023-09-22T15:19:50,686 src/pgenlib/pgenlib.cpp:22258:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,686 22258 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,687 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,688 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,689 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,690 | ^ 2023-09-22T15:19:50,690 src/pgenlib/pgenlib.cpp:22268:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,691 22268 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,691 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,694 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,694 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,695 | ^ 2023-09-22T15:19:50,695 src/pgenlib/pgenlib.cpp:22278:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,696 22278 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,696 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,699 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,700 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,701 | ^ 2023-09-22T15:19:50,701 src/pgenlib/pgenlib.cpp:22293:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,702 22293 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,702 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,721 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent_list(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_and_phasepresent_list*)’: 2023-09-22T15:19:50,722 src/pgenlib/pgenlib.cpp:22670:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,722 22670 | __pyx_t_12 = ((__pyx_t_11[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,723 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,727 src/pgenlib/pgenlib.cpp:22728:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,728 22728 | __pyx_t_12 = ((__pyx_t_11[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,729 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,734 src/pgenlib/pgenlib.cpp:22786:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,735 22786 | __pyx_t_12 = ((__pyx_t_11[1]) < (2 * __pyx_v_subset_size)); 2023-09-22T15:19:50,735 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,740 src/pgenlib/pgenlib.cpp:22844:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,740 22844 | __pyx_t_12 = ((__pyx_t_11[1]) < __pyx_v_subset_size); 2023-09-22T15:19:50,741 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,766 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_29read_alleles_and_phasepresent_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:50,767 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,767 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,768 | ^ 2023-09-22T15:19:50,768 src/pgenlib/pgenlib.cpp:23195:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,769 23195 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,770 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,770 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,771 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,771 | ^ 2023-09-22T15:19:50,772 src/pgenlib/pgenlib.cpp:23197:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,772 23197 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,773 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,775 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,775 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,776 | ^ 2023-09-22T15:19:50,776 src/pgenlib/pgenlib.cpp:23199:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,777 23199 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,777 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,779 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,780 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,780 | ^ 2023-09-22T15:19:50,781 src/pgenlib/pgenlib.cpp:23201:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,781 23201 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,782 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,785 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,785 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,786 | ^ 2023-09-22T15:19:50,787 src/pgenlib/pgenlib.cpp:23214:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,787 23214 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,788 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,790 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,791 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,792 | ^ 2023-09-22T15:19:50,792 src/pgenlib/pgenlib.cpp:23224:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,793 23224 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,793 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,796 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,797 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,797 | ^ 2023-09-22T15:19:50,798 src/pgenlib/pgenlib.cpp:23234:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,798 23234 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,799 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,802 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,802 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,803 | ^ 2023-09-22T15:19:50,804 src/pgenlib/pgenlib.cpp:23249:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,804 23249 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,805 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,855 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_31read_dosages_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:50,856 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,856 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,856 | ^ 2023-09-22T15:19:50,857 src/pgenlib/pgenlib.cpp:24349:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,857 24349 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,858 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,859 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,859 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,860 | ^ 2023-09-22T15:19:50,860 src/pgenlib/pgenlib.cpp:24351:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,860 24351 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,861 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,862 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,863 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,863 | ^ 2023-09-22T15:19:50,864 src/pgenlib/pgenlib.cpp:24353:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,864 24353 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,865 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,866 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,867 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,867 | ^ 2023-09-22T15:19:50,868 src/pgenlib/pgenlib.cpp:24355:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,869 24355 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,869 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,870 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,871 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,871 | ^ 2023-09-22T15:19:50,872 src/pgenlib/pgenlib.cpp:24357:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,872 24357 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,873 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,874 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,875 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,875 | ^ 2023-09-22T15:19:50,876 src/pgenlib/pgenlib.cpp:24370:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,877 24370 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,877 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,879 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,880 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,880 | ^ 2023-09-22T15:19:50,881 src/pgenlib/pgenlib.cpp:24380:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,881 24380 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,882 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,884 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,884 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,885 | ^ 2023-09-22T15:19:50,885 src/pgenlib/pgenlib.cpp:24390:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,886 24390 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,886 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,889 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,889 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,890 | ^ 2023-09-22T15:19:50,891 src/pgenlib/pgenlib.cpp:24397:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,891 24397 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,892 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,895 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,896 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,896 | ^ 2023-09-22T15:19:50,896 src/pgenlib/pgenlib.cpp:24412:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,897 24412 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,898 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,899 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,900 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,901 | ^ 2023-09-22T15:19:50,902 src/pgenlib/pgenlib.cpp:24414:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,902 24414 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,903 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,912 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages_list_internal32(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages_list_internal32*)’: 2023-09-22T15:19:50,913 src/pgenlib/pgenlib.cpp:24684:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,914 24684 | __pyx_t_7 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,915 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,919 src/pgenlib/pgenlib.cpp:24742:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,919 24742 | __pyx_t_7 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2023-09-22T15:19:50,920 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,942 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages_list_internal64(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages_list_internal64*)’: 2023-09-22T15:19:50,943 src/pgenlib/pgenlib.cpp:25207:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,943 25207 | __pyx_t_7 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:50,944 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,949 src/pgenlib/pgenlib.cpp:25265:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:50,949 25265 | __pyx_t_7 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2023-09-22T15:19:50,950 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,986 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_33read_dosages_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:50,987 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,988 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,988 | ^ 2023-09-22T15:19:50,988 src/pgenlib/pgenlib.cpp:25859:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,989 25859 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,989 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,991 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,992 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,992 | ^ 2023-09-22T15:19:50,993 src/pgenlib/pgenlib.cpp:25861:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,994 25861 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,994 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:50,996 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:50,997 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:50,997 | ^ 2023-09-22T15:19:50,998 src/pgenlib/pgenlib.cpp:25863:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:50,999 25863 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:50,999 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,000 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,001 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,001 | ^ 2023-09-22T15:19:51,002 src/pgenlib/pgenlib.cpp:25865:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,003 25865 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,003 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,005 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,006 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,006 | ^ 2023-09-22T15:19:51,007 src/pgenlib/pgenlib.cpp:25878:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,008 25878 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,008 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,010 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,010 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,011 | ^ 2023-09-22T15:19:51,012 src/pgenlib/pgenlib.cpp:25888:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,013 25888 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,013 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,014 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,015 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,015 | ^ 2023-09-22T15:19:51,016 src/pgenlib/pgenlib.cpp:25895:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,016 25895 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,017 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,019 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,020 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,020 | ^ 2023-09-22T15:19:51,021 src/pgenlib/pgenlib.cpp:25910:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,021 25910 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,021 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,023 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,023 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,024 | ^ 2023-09-22T15:19:51,025 src/pgenlib/pgenlib.cpp:25912:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,025 25912 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,026 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,049 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_35count(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:51,050 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,050 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,051 | ^ 2023-09-22T15:19:51,052 src/pgenlib/pgenlib.cpp:26374:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,052 26374 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,053 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,054 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,054 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,055 | ^ 2023-09-22T15:19:51,056 src/pgenlib/pgenlib.cpp:26376:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,056 26376 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,057 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,057 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,058 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,058 | ^ 2023-09-22T15:19:51,059 src/pgenlib/pgenlib.cpp:26378:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,060 26378 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,060 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,061 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,062 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,062 | ^ 2023-09-22T15:19:51,063 src/pgenlib/pgenlib.cpp:26391:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,064 26391 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,064 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,066 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,066 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,067 | ^ 2023-09-22T15:19:51,067 src/pgenlib/pgenlib.cpp:26401:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,068 26401 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,068 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,071 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,072 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,072 | ^ 2023-09-22T15:19:51,073 src/pgenlib/pgenlib.cpp:26416:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,073 26416 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,074 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,090 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_37change_sample_subset(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:51,091 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,091 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,092 | ^ 2023-09-22T15:19:51,093 src/pgenlib/pgenlib.cpp:26734:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,094 26734 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,094 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,097 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,098 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,098 | ^ 2023-09-22T15:19:51,099 src/pgenlib/pgenlib.cpp:26754:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,100 26754 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,101 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,123 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_41__exit__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:51,123 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,124 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,124 | ^ 2023-09-22T15:19:51,125 src/pgenlib/pgenlib.cpp:27418:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,125 27418 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,126 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,128 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,128 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,129 | ^ 2023-09-22T15:19:51,129 src/pgenlib/pgenlib.cpp:27420:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,130 27420 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,130 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,132 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,133 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,133 | ^ 2023-09-22T15:19:51,134 src/pgenlib/pgenlib.cpp:27422:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,134 27422 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,135 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,137 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,138 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,139 | ^ 2023-09-22T15:19:51,139 src/pgenlib/pgenlib.cpp:27435:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,139 27435 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,140 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,142 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,143 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,144 | ^ 2023-09-22T15:19:51,144 src/pgenlib/pgenlib.cpp:27445:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,145 27445 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,145 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,156 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_47__setstate_cython__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:51,157 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,157 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,158 | ^ 2023-09-22T15:19:51,159 src/pgenlib/pgenlib.cpp:27881:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,159 27881 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,160 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,168 src/pgenlib/pgenlib.cpp: In function ‘int __pyx_pw_7pgenlib_10PgenWriter_1__cinit__(PyObject*, PyObject*, PyObject*)’: 2023-09-22T15:19:51,169 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,170 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,170 | ^ 2023-09-22T15:19:51,171 src/pgenlib/pgenlib.cpp:28083:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,171 28083 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,172 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,172 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,173 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,174 | ^ 2023-09-22T15:19:51,174 src/pgenlib/pgenlib.cpp:28085:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,175 28085 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,175 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,176 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,177 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,178 | ^ 2023-09-22T15:19:51,178 src/pgenlib/pgenlib.cpp:28087:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,179 28087 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,179 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,181 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,181 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,182 | ^ 2023-09-22T15:19:51,182 src/pgenlib/pgenlib.cpp:28089:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,183 28089 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,183 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,185 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,186 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,186 | ^ 2023-09-22T15:19:51,187 src/pgenlib/pgenlib.cpp:28091:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,187 28091 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,188 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,190 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,191 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,191 | ^ 2023-09-22T15:19:51,192 src/pgenlib/pgenlib.cpp:28093:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,192 28093 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,193 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,195 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,196 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,196 | ^ 2023-09-22T15:19:51,197 src/pgenlib/pgenlib.cpp:28095:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,197 28095 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,198 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,199 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,200 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,201 | ^ 2023-09-22T15:19:51,201 src/pgenlib/pgenlib.cpp:28097:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,202 28097 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,202 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,205 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,206 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,206 | ^ 2023-09-22T15:19:51,207 src/pgenlib/pgenlib.cpp:28110:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,208 28110 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,208 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,211 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,211 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,212 | ^ 2023-09-22T15:19:51,213 src/pgenlib/pgenlib.cpp:28120:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,213 28120 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,214 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,216 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,217 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,217 | ^ 2023-09-22T15:19:51,218 src/pgenlib/pgenlib.cpp:28130:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,218 28130 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,219 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,221 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,222 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,222 | ^ 2023-09-22T15:19:51,223 src/pgenlib/pgenlib.cpp:28140:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,223 28140 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,224 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,226 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,226 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,227 | ^ 2023-09-22T15:19:51,227 src/pgenlib/pgenlib.cpp:28147:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,228 28147 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,229 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,230 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,231 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,232 | ^ 2023-09-22T15:19:51,232 src/pgenlib/pgenlib.cpp:28154:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,233 28154 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,233 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,235 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,236 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,236 | ^ 2023-09-22T15:19:51,237 src/pgenlib/pgenlib.cpp:28161:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,238 28161 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,238 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,241 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,241 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,242 | ^ 2023-09-22T15:19:51,242 src/pgenlib/pgenlib.cpp:28176:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,243 28176 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,244 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,245 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,245 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,246 | ^ 2023-09-22T15:19:51,247 src/pgenlib/pgenlib.cpp:28178:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,247 28178 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,247 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,249 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,250 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,250 | ^ 2023-09-22T15:19:51,251 src/pgenlib/pgenlib.cpp:28180:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,251 28180 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,252 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,254 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,255 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,255 | ^ 2023-09-22T15:19:51,256 src/pgenlib/pgenlib.cpp:28182:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,256 28182 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,257 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,302 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_5append_biallelic(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:51,302 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,303 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,303 | ^ 2023-09-22T15:19:51,304 src/pgenlib/pgenlib.cpp:29415:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,305 29415 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,305 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,327 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_7append_alleles(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:51,328 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,329 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,329 | ^ 2023-09-22T15:19:51,330 src/pgenlib/pgenlib.cpp:29880:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,330 29880 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,331 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,332 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,333 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,334 | ^ 2023-09-22T15:19:51,334 src/pgenlib/pgenlib.cpp:29882:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,335 29882 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,335 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,338 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,339 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,339 | ^ 2023-09-22T15:19:51,340 src/pgenlib/pgenlib.cpp:29895:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,341 29895 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,341 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,345 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,345 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,346 | ^ 2023-09-22T15:19:51,346 src/pgenlib/pgenlib.cpp:29910:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,347 29910 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,348 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,370 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_9append_partially_phased(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:51,371 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,371 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,372 | ^ 2023-09-22T15:19:51,372 src/pgenlib/pgenlib.cpp:30369:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,373 30369 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,373 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,375 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,375 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,376 | ^ 2023-09-22T15:19:51,376 src/pgenlib/pgenlib.cpp:30371:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,377 30371 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,377 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,380 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,380 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,381 | ^ 2023-09-22T15:19:51,382 src/pgenlib/pgenlib.cpp:30384:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,382 30384 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,383 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,420 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_11append_dosages(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:51,420 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,421 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,422 | ^ 2023-09-22T15:19:51,422 src/pgenlib/pgenlib.cpp:31152:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,423 31152 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,424 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,443 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_13append_biallelic_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:51,444 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,445 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,445 | ^ 2023-09-22T15:19:51,446 src/pgenlib/pgenlib.cpp:31532:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,447 31532 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,447 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,475 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_15append_alleles_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:51,475 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,476 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,477 | ^ 2023-09-22T15:19:51,477 src/pgenlib/pgenlib.cpp:32104:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,478 32104 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,478 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,479 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,480 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,480 | ^ 2023-09-22T15:19:51,481 src/pgenlib/pgenlib.cpp:32106:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,481 32106 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,482 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,484 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,485 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,485 | ^ 2023-09-22T15:19:51,486 src/pgenlib/pgenlib.cpp:32119:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,486 32119 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,487 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,490 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,491 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,491 | ^ 2023-09-22T15:19:51,492 src/pgenlib/pgenlib.cpp:32134:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,493 32134 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,493 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,518 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_17append_partially_phased_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:51,518 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,519 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,520 | ^ 2023-09-22T15:19:51,520 src/pgenlib/pgenlib.cpp:32627:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,521 32627 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,521 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,522 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,523 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,523 | ^ 2023-09-22T15:19:51,524 src/pgenlib/pgenlib.cpp:32629:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,525 32629 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,525 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,528 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,528 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,529 | ^ 2023-09-22T15:19:51,530 src/pgenlib/pgenlib.cpp:32642:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,530 32642 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,531 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,571 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_19append_dosages_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:51,572 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,572 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,573 | ^ 2023-09-22T15:19:51,573 src/pgenlib/pgenlib.cpp:33474:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,574 33474 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,574 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,601 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_23__exit__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:51,601 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,602 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,602 | ^ 2023-09-22T15:19:51,603 src/pgenlib/pgenlib.cpp:34061:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,603 34061 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,604 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,605 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,606 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,607 | ^ 2023-09-22T15:19:51,607 src/pgenlib/pgenlib.cpp:34063:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,608 34063 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,608 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,610 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,611 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,612 | ^ 2023-09-22T15:19:51,612 src/pgenlib/pgenlib.cpp:34065:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,613 34065 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,614 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,616 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,617 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,617 | ^ 2023-09-22T15:19:51,618 src/pgenlib/pgenlib.cpp:34078:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,618 34078 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,619 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,622 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,622 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,623 | ^ 2023-09-22T15:19:51,624 src/pgenlib/pgenlib.cpp:34088:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,624 34088 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,625 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,636 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_29__setstate_cython__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:51,636 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,637 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,637 | ^ 2023-09-22T15:19:51,638 src/pgenlib/pgenlib.cpp:34460:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,638 34460 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,639 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,808 src/pgenlib/pgenlib.cpp: In function ‘const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context*, const char*)’: 2023-09-22T15:19:51,808 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,809 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,809 | ^ 2023-09-22T15:19:51,810 src/pgenlib/pgenlib.cpp:37929:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,810 37929 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,811 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,814 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,814 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,815 | ^ 2023-09-22T15:19:51,816 src/pgenlib/pgenlib.cpp:37942:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,816 37942 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,817 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,881 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __Pyx_PyInt_MultiplyObjC(PyObject*, PyObject*, long int, int, int)’: 2023-09-22T15:19:51,881 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,882 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,883 | ^ 2023-09-22T15:19:51,883 src/pgenlib/pgenlib.cpp:39186:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,884 39186 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,885 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,886 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,887 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,888 | ^ 2023-09-22T15:19:51,888 src/pgenlib/pgenlib.cpp:39197:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,889 39197 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,889 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,893 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,893 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,894 | ^ 2023-09-22T15:19:51,894 src/pgenlib/pgenlib.cpp:39208:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,895 39208 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,896 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,899 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,899 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,900 | ^ 2023-09-22T15:19:51,900 src/pgenlib/pgenlib.cpp:39219:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,901 39219 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,901 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,905 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,905 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,906 | ^ 2023-09-22T15:19:51,906 src/pgenlib/pgenlib.cpp:39230:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,907 39230 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,907 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:51,911 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:51,912 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:51,912 | ^ 2023-09-22T15:19:51,913 src/pgenlib/pgenlib.cpp:39241:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:51,913 39241 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:51,914 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:20:39,723 At global scope: 2023-09-22T15:20:39,723 cc1plus: note: unrecognized command-line option ‘-Wno-macro-redefined’ may have been intended to silence earlier diagnostics 2023-09-22T15:20:42,403 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/plink2/include/pgenlib_misc.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_misc.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-22T15:20:46,163 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/plink2/include/pgenlib_read.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_read.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-22T15:21:02,054 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/plink2/include/pgenlib_write.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_write.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-22T15:21:05,922 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/plink2/include/plink2_base.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_base.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-22T15:21:06,348 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/plink2/include/plink2_bits.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_bits.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-22T15:21:08,518 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/plink2/pgenlib_ffi_support.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/pgenlib_ffi_support.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-22T15:21:09,760 creating build/lib.linux-armv7l-cpython-311 2023-09-22T15:21:09,760 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/pgenlib/pgenlib.o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_misc.o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_read.o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_write.o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_base.o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_bits.o build/temp.linux-armv7l-cpython-311/src/plink2/pgenlib_ffi_support.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pgenlib.cpython-311-arm-linux-gnueabihf.so -std=c++98 2023-09-22T15:21:10,112 installing to build/bdist.linux-armv7l/wheel 2023-09-22T15:21:10,113 running install 2023-09-22T15:21:10,137 running install_lib 2023-09-22T15:21:10,145 creating build/bdist.linux-armv7l 2023-09-22T15:21:10,145 creating build/bdist.linux-armv7l/wheel 2023-09-22T15:21:10,147 copying build/lib.linux-armv7l-cpython-311/pgenlib.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-09-22T15:21:10,198 running install_egg_info 2023-09-22T15:21:10,210 running egg_info 2023-09-22T15:21:10,215 writing src/Pgenlib.egg-info/PKG-INFO 2023-09-22T15:21:10,217 writing dependency_links to src/Pgenlib.egg-info/dependency_links.txt 2023-09-22T15:21:10,219 writing top-level names to src/Pgenlib.egg-info/top_level.txt 2023-09-22T15:21:10,222 dependency /tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:21:10,223 dependency /tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:21:10,223 dependency /tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:21:10,224 dependency /tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:21:10,224 dependency /tmp/pip-build-env-hlj9gkho/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:21:10,229 reading manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-09-22T15:21:10,231 reading manifest template 'MANIFEST.in' 2023-09-22T15:21:10,233 adding license file 'LICENSE' 2023-09-22T15:21:10,236 writing manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-09-22T15:21:10,237 Copying src/Pgenlib.egg-info to build/bdist.linux-armv7l/wheel/Pgenlib-0.82.0-py3.11.egg-info 2023-09-22T15:21:10,245 running install_scripts 2023-09-22T15:21:10,290 creating build/bdist.linux-armv7l/wheel/Pgenlib-0.82.0.dist-info/WHEEL 2023-09-22T15:21:10,292 creating '/tmp/pip-wheel-8zw6j6mj/.tmp-qqr9wmam/Pgenlib-0.82.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-22T15:21:10,981 adding 'pgenlib.cpython-311-arm-linux-gnueabihf.so' 2023-09-22T15:21:11,010 adding 'Pgenlib-0.82.0.dist-info/LICENSE' 2023-09-22T15:21:11,012 adding 'Pgenlib-0.82.0.dist-info/METADATA' 2023-09-22T15:21:11,013 adding 'Pgenlib-0.82.0.dist-info/WHEEL' 2023-09-22T15:21:11,014 adding 'Pgenlib-0.82.0.dist-info/top_level.txt' 2023-09-22T15:21:11,014 adding 'Pgenlib-0.82.0.dist-info/RECORD' 2023-09-22T15:21:11,029 removing build/bdist.linux-armv7l/wheel 2023-09-22T15:21:11,199 Building wheel for pgenlib (pyproject.toml): finished with status 'done' 2023-09-22T15:21:11,236 Created wheel for pgenlib: filename=Pgenlib-0.82.0-cp311-cp311-linux_armv7l.whl size=1391907 sha256=4da917a14038914fca7ee7cc073bbfac5f01312f9102fdb7bbd34291a05dca32 2023-09-22T15:21:11,237 Stored in directory: /tmp/pip-ephem-wheel-cache-d7liq1qq/wheels/14/bf/0b/121b84a0ff0524f6e0c2a36f3e297852e3522277c1ea852739 2023-09-22T15:21:11,248 Successfully built pgenlib 2023-09-22T15:21:11,291 Removed build tracker: '/tmp/pip-build-tracker-ceicsh7n'