2023-09-22T15:19:11,109 Created temporary directory: /tmp/pip-build-tracker-csiw06i5 2023-09-22T15:19:11,110 Initialized build tracking at /tmp/pip-build-tracker-csiw06i5 2023-09-22T15:19:11,111 Created build tracker: /tmp/pip-build-tracker-csiw06i5 2023-09-22T15:19:11,111 Entered build tracker: /tmp/pip-build-tracker-csiw06i5 2023-09-22T15:19:11,112 Created temporary directory: /tmp/pip-wheel-e6zv4ze_ 2023-09-22T15:19:11,115 Created temporary directory: /tmp/pip-ephem-wheel-cache-t5g94bi1 2023-09-22T15:19:11,137 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-22T15:19:11,141 2 location(s) to search for versions of pgenlib: 2023-09-22T15:19:11,141 * https://pypi.org/simple/pgenlib/ 2023-09-22T15:19:11,141 * https://www.piwheels.org/simple/pgenlib/ 2023-09-22T15:19:11,141 Fetching project page and analyzing links: https://pypi.org/simple/pgenlib/ 2023-09-22T15:19:11,142 Getting page https://pypi.org/simple/pgenlib/ 2023-09-22T15:19:11,144 Found index url https://pypi.org/simple/ 2023-09-22T15:19:11,326 Fetched page https://pypi.org/simple/pgenlib/ as application/vnd.pypi.simple.v1+json 2023-09-22T15:19:11,336 Found link https://files.pythonhosted.org/packages/d9/cc/f3bbaa8da897e9a04e1a885183a0c533ba563bb3a1dbfba6680704473336/Pgenlib-0.81.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.1 2023-09-22T15:19:11,337 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/22/06/d83bcf26ea2212baccc88b3771c78dce0eff643a1293aa3f8993c242fe02/Pgenlib-0.81.2-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,337 Found link https://files.pythonhosted.org/packages/6d/f7/c286a64ec213ea42bfa67b20ce1271b0b8699ac3880854657f8ed1620759/Pgenlib-0.81.2.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.2 2023-09-22T15:19:11,338 Found link https://files.pythonhosted.org/packages/38/09/74ec09b0c9ddde6a3562898507b99b47adde5350248f2899b59edcc082b0/Pgenlib-0.81.3.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.3 2023-09-22T15:19:11,339 Found link https://files.pythonhosted.org/packages/29/d3/311512e956d1bc898cd6020e15691e2778e1bf3a1c2e01eadbb6031d8bd5/Pgenlib-0.82.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.82.0 2023-09-22T15:19:11,340 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/2b/91/1d7b72b61c624763fc29c3e54df394bc611080a3dc2176af2332257e8fac/Pgenlib-0.82.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,341 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/30/d1/166d130225f03033df8ca688ef54dca200fb3de3419f0edc914afd21a3a7/Pgenlib-0.82.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,342 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/be/d5/85dc2412def8644cccfafe6722e7d1c5411c9725366156eef4aec843ba95/Pgenlib-0.82.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,342 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/a1/74/ade2137ac2eee449bfa959f5808cc6d1bdc6cec4cd9b4fabcd416246a889/Pgenlib-0.82.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,343 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/9a/65/79600073fc41faaa2b008b1bedf9233125aeaad404a973e563810268a626/Pgenlib-0.82.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,343 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/29/20/876e704d95b3ca26e7a554532385d52f2133cd99d2f132a29fb16062cb4d/Pgenlib-0.82.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,344 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b5/32/8dbf9cb1a3a3a6950deab99e0515a753273396ef1770b5d2491e1f8eaba9/Pgenlib-0.82.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,345 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/fc/24/2e6994141f63fd6c129b0bd0bbc9ef8df91e98b171a5ae0a5aeb7a01532c/Pgenlib-0.82.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,345 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/54/8e/3a2eef4571d6d2c8604a3810c3e092c9e145839934dde6c91ecf4be63be8/Pgenlib-0.82.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,346 Found link https://files.pythonhosted.org/packages/9b/d1/73c8eb879691b5ef443cf3c26e801590a7eac657264f80538c7541266fa8/Pgenlib-0.82.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.82.1 2023-09-22T15:19:11,347 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/95/0a/86ce9fc2291a83b63817ac43b8f2924af9c02746b4f20c44142ce9f8a4ce/Pgenlib-0.83.0-cp310-cp310-macosx_13_0_arm64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,347 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/54/73/924728769d9bd1e738190588c1ac1c2fc53d65641565c013ac1d79fe8403/Pgenlib-0.83.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,348 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/3b/22/29e510423558b22e98374496ef7c8b178c5f4d47f6e9c1fe4999c6ee8761/Pgenlib-0.83.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,348 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/7c/a9/5987776baf730f0f8e8b44b7c358f8b2b44cb24f9fa938b9f6dcb8724f69/Pgenlib-0.83.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,349 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/88/64/2df132fbea4b3aad80aab161c90e9f24e5d494917605b1f01f522950d07e/Pgenlib-0.83.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,350 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/02/4e/df2808d3f87f77419e0abb68544f0f220c261a7eed6433c7150eff1fec49/Pgenlib-0.83.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,350 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/c1/14/00aaf84a05ae9b25f51af36f285614e42c557860051fe16ef0860b03b3c6/Pgenlib-0.83.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,351 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b7/a8/832b27db6e563e46c40e59714a0adf09959d67d964feb5ef84b51f89a0b9/Pgenlib-0.83.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,352 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/5b/ba/ba9401daf559588f84aa8ff82b55ce1aac6339a69028a3b14748af74539f/Pgenlib-0.83.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,354 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b6/d7/6cf098fd410209d749e41610daeb12b440ea603a45f787a49474461c6043/Pgenlib-0.83.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,355 Found link https://files.pythonhosted.org/packages/b5/f4/6cd16a7f543438c5910cec68bd5d49d231152753f3f53f4dda1322305522/Pgenlib-0.83.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.83.0 2023-09-22T15:19:11,357 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/16/24/5e5f3f751fc014e67c567073089e5ff22887c890ddcb33b2eee234b2ff66/Pgenlib-0.90.0-cp310-cp310-macosx_13_0_arm64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,358 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/43/45/b23b200529cc05e27de60c6623e3c272f3babacd46ba7ca04f8ba8cee212/Pgenlib-0.90.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,358 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/95/af/14f03aa5e6568810347aef280eb57b82a5a45e03f33c9653d56685a5157c/Pgenlib-0.90.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,360 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/59/d6/7157c61da0ebb0d2f05ba178ef1c57e567054192e47153ea29952de377c9/Pgenlib-0.90.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,361 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/4b/62/3d03109e3a79b4981cde01c00f7d63b2f850599d3b4c06125e0561b0dbd7/Pgenlib-0.90.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,361 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/7f/75/03cbd46f9f1cb21c22745c4548f85b5e548b1e5a5cbb4d69064f111c3f77/Pgenlib-0.90.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,362 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/da/25/eef614e9ea13964aed3aa93211d44fc0a53591fe59901def7f0842c26259/Pgenlib-0.90.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,364 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/f3/b0/01e1c04e3fe156252d1ebb82f362da5642a128d72c5a67c481b26986d450/Pgenlib-0.90.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,365 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/05/cc/185166c604f18f1d60291fd0d407d6c02b26e712af8e39bfaabfe9be57ce/Pgenlib-0.90.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,366 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/45/60/dd584321eedc419f7b1aee92fc15110070714ca949ee012bf5dddffec6cf/Pgenlib-0.90.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,367 Found link https://files.pythonhosted.org/packages/dc/26/3150424408411a6f326db5b2f61a5accf900dfe3d287f4452e73d62b0b01/Pgenlib-0.90.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.90.0 2023-09-22T15:19:11,369 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/0a/24/eb4944605bf1ad5142466d268aac02ca2c1e57242511578ae521c3427e77/Pgenlib-0.90.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,371 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/47/c5/b8acab2c2db8acbf153d4e1284236838d31c0f17df797f04f15686e5f15d/Pgenlib-0.90.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,372 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/00/66/4764ab01efa2952b57457324007f5f821ac124a234bb1bd24ff0e6e80df6/Pgenlib-0.90.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,373 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/f5/16/3f9fce33a062ed8b6b35aa85517fd291e43636172d1e4a72dacb8538799e/Pgenlib-0.90.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,374 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/67/f3/b823df42f317a6bc4212095457d451a03c7dba99b55440d3ffeaf3ca4626/Pgenlib-0.90.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,375 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b7/6d/db7f7f9acb0dd3c0a39055738727a047371595a3c79f13c29e77b633eb72/Pgenlib-0.90.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,375 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/e3/84/c69234c8f522d7d67459ad1288fb516a39f588dcab297b29a619ee3f340b/Pgenlib-0.90.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,377 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/82/44/df286e42696ea0bf1f817e5a7a924f268ee25d4644c654f4b89f14375705/Pgenlib-0.90.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,377 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/c3/c3/30647c9cbafe729c786891bb3c873535bf8d667fb6b218642ada95738517/Pgenlib-0.90.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,379 Found link https://files.pythonhosted.org/packages/75/02/d5151e065fd355fc365adf472017db0f25f199f5a550df1d4bb9808ba67d/Pgenlib-0.90.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.90.1 2023-09-22T15:19:11,380 Fetching project page and analyzing links: https://www.piwheels.org/simple/pgenlib/ 2023-09-22T15:19:11,381 Getting page https://www.piwheels.org/simple/pgenlib/ 2023-09-22T15:19:11,382 Found index url https://www.piwheels.org/simple/ 2023-09-22T15:19:11,540 Fetched page https://www.piwheels.org/simple/pgenlib/ as text/html 2023-09-22T15:19:11,546 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.1-cp39-cp39-linux_armv7l.whl#sha256=e603ad759fc12e178a3c2d3fb74b25cbb9d9ffcaf1d24dfac70f02101dab2684 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,547 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.1-cp39-cp39-linux_armv6l.whl#sha256=e603ad759fc12e178a3c2d3fb74b25cbb9d9ffcaf1d24dfac70f02101dab2684 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,548 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.0-cp39-cp39-linux_armv7l.whl#sha256=3893959a4ddc9a66babc9c59a168b24d56baa0b009e29e55873dd5640e4607fd (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,549 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.0-cp39-cp39-linux_armv6l.whl#sha256=3893959a4ddc9a66babc9c59a168b24d56baa0b009e29e55873dd5640e4607fd (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,549 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.83.0-cp39-cp39-linux_armv7l.whl#sha256=5a4f481c10f8f098bf8540a7051c26b226ded60fbadcb760bc8b490ed7f9d50e (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,550 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.83.0-cp39-cp39-linux_armv6l.whl#sha256=5a4f481c10f8f098bf8540a7051c26b226ded60fbadcb760bc8b490ed7f9d50e (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,550 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.1-cp39-cp39-linux_armv7l.whl#sha256=7f2cd443fbc7956edef6af632c8b31dc2b48cd9cca92bacece82495cdff52291 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,551 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.1-cp39-cp39-linux_armv6l.whl#sha256=7f2cd443fbc7956edef6af632c8b31dc2b48cd9cca92bacece82495cdff52291 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,551 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.0-cp39-cp39-linux_armv7l.whl#sha256=b38d7233c5515f730969499da3b95e95f64109573755cdda562026109c999c33 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,552 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.0-cp39-cp39-linux_armv6l.whl#sha256=b38d7233c5515f730969499da3b95e95f64109573755cdda562026109c999c33 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,552 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp311-cp311-linux_armv7l.whl#sha256=d35941b198cb411716265233328d85e638faae97f31afeff3c50b56f287d8a88 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,553 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp311-cp311-linux_armv6l.whl#sha256=d35941b198cb411716265233328d85e638faae97f31afeff3c50b56f287d8a88 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,554 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp39-cp39-linux_armv7l.whl#sha256=5a7e6ce67f2000041a2e5d373924f58245f07fb04f09b9c5740c8554ff44d333 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,554 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp39-cp39-linux_armv6l.whl#sha256=5a7e6ce67f2000041a2e5d373924f58245f07fb04f09b9c5740c8554ff44d333 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,555 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.2-cp39-cp39-linux_armv7l.whl#sha256=2e0ad339664cbc60a4ae0b3a935afcf56d3e1a344387d8327ae50b03dce0d852 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,555 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.2-cp39-cp39-linux_armv6l.whl#sha256=2e0ad339664cbc60a4ae0b3a935afcf56d3e1a344387d8327ae50b03dce0d852 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,556 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.1-cp39-cp39-linux_armv7l.whl#sha256=7fe4ecefc0464d30dc029a926937523d919f28fa0320e6522fa229764a168909 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,556 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.1-cp39-cp39-linux_armv6l.whl#sha256=7fe4ecefc0464d30dc029a926937523d919f28fa0320e6522fa229764a168909 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2023-09-22T15:19:11,556 Skipping link: not a file: https://www.piwheels.org/simple/pgenlib/ 2023-09-22T15:19:11,557 Skipping link: not a file: https://pypi.org/simple/pgenlib/ 2023-09-22T15:19:11,578 Given no hashes to check 1 links for project 'pgenlib': discarding no candidates 2023-09-22T15:19:11,597 Collecting pgenlib==0.82.1 2023-09-22T15:19:11,599 Created temporary directory: /tmp/pip-unpack-ornd4t6i 2023-09-22T15:19:11,837 Downloading Pgenlib-0.82.1.tar.gz (489 kB) 2023-09-22T15:19:12,159 Added pgenlib==0.82.1 from https://files.pythonhosted.org/packages/9b/d1/73c8eb879691b5ef443cf3c26e801590a7eac657264f80538c7541266fa8/Pgenlib-0.82.1.tar.gz to build tracker '/tmp/pip-build-tracker-csiw06i5' 2023-09-22T15:19:12,165 Created temporary directory: /tmp/pip-build-env-3govd_yo 2023-09-22T15:19:12,170 Installing build dependencies: started 2023-09-22T15:19:12,171 Running command pip subprocess to install build dependencies 2023-09-22T15:19:13,375 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-22T15:19:13,878 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-22T15:19:15,433 Collecting setuptools 2023-09-22T15:19:15,434 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-22T15:19:15,440 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-22T15:19:15,645 Collecting wheel 2023-09-22T15:19:15,660 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-22T15:19:15,773 Collecting oldest-supported-numpy>=2022.8.16 2023-09-22T15:19:15,786 Using cached https://www.piwheels.org/simple/oldest-supported-numpy/oldest_supported_numpy-2023.8.3-py3-none-any.whl (4.8 kB) 2023-09-22T15:19:17,189 Collecting Cython>=0.29.21 2023-09-22T15:19:17,190 Obtaining dependency information for Cython>=0.29.21 from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata 2023-09-22T15:19:17,195 Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-22T15:19:18,243 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-22T15:19:18,251 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-22T15:19:18,258 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-22T15:19:18,265 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-22T15:19:18,272 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-22T15:19:18,656 Collecting numpy==1.23.2 (from oldest-supported-numpy>=2022.8.16) 2023-09-22T15:19:19,642 Using cached https://www.piwheels.org/simple/numpy/numpy-1.23.2-cp311-cp311-linux_armv7l.whl (12.4 MB) 2023-09-22T15:19:20,042 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-22T15:19:20,077 Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB) 2023-09-22T15:19:22,678 Installing collected packages: wheel, setuptools, numpy, Cython, oldest-supported-numpy 2023-09-22T15:19:23,009 Creating /tmp/pip-build-env-3govd_yo/overlay/local/bin 2023-09-22T15:19:23,011 changing mode of /tmp/pip-build-env-3govd_yo/overlay/local/bin/wheel to 755 2023-09-22T15:19:36,146 changing mode of /tmp/pip-build-env-3govd_yo/overlay/local/bin/f2py to 755 2023-09-22T15:19:36,149 changing mode of /tmp/pip-build-env-3govd_yo/overlay/local/bin/f2py3 to 755 2023-09-22T15:19:36,160 changing mode of /tmp/pip-build-env-3govd_yo/overlay/local/bin/f2py3.11 to 755 2023-09-22T15:19:38,960 changing mode of /tmp/pip-build-env-3govd_yo/overlay/local/bin/cygdb to 755 2023-09-22T15:19:38,962 changing mode of /tmp/pip-build-env-3govd_yo/overlay/local/bin/cython to 755 2023-09-22T15:19:38,963 changing mode of /tmp/pip-build-env-3govd_yo/overlay/local/bin/cythonize to 755 2023-09-22T15:19:39,017 Successfully installed Cython-3.0.2 numpy-1.23.2 oldest-supported-numpy-2023.8.3 setuptools-68.2.2 wheel-0.41.2 2023-09-22T15:19:39,636 Installing build dependencies: finished with status 'done' 2023-09-22T15:19:39,639 Getting requirements to build wheel: started 2023-09-22T15:19:39,640 Running command Getting requirements to build wheel 2023-09-22T15:19:47,052 Compiling src/pgenlib/pgenlib.pyx because it changed. 2023-09-22T15:19:47,052 [1/1] Cythonizing src/pgenlib/pgenlib.pyx 2023-09-22T15:19:47,117 running egg_info 2023-09-22T15:19:47,125 writing src/Pgenlib.egg-info/PKG-INFO 2023-09-22T15:19:47,128 writing dependency_links to src/Pgenlib.egg-info/dependency_links.txt 2023-09-22T15:19:47,131 writing top-level names to src/Pgenlib.egg-info/top_level.txt 2023-09-22T15:19:47,150 dependency /tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:47,151 dependency /tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:47,152 dependency /tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:47,152 dependency /tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:47,153 dependency /tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:47,160 reading manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-09-22T15:19:47,165 reading manifest template 'MANIFEST.in' 2023-09-22T15:19:47,168 adding license file 'LICENSE' 2023-09-22T15:19:47,171 writing manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-09-22T15:19:47,558 Getting requirements to build wheel: finished with status 'done' 2023-09-22T15:19:47,569 Created temporary directory: /tmp/pip-modern-metadata-_m95dnqe 2023-09-22T15:19:47,571 Preparing metadata (pyproject.toml): started 2023-09-22T15:19:47,573 Running command Preparing metadata (pyproject.toml) 2023-09-22T15:19:49,023 running dist_info 2023-09-22T15:19:49,044 creating /tmp/pip-modern-metadata-_m95dnqe/Pgenlib.egg-info 2023-09-22T15:19:49,049 writing /tmp/pip-modern-metadata-_m95dnqe/Pgenlib.egg-info/PKG-INFO 2023-09-22T15:19:49,052 writing dependency_links to /tmp/pip-modern-metadata-_m95dnqe/Pgenlib.egg-info/dependency_links.txt 2023-09-22T15:19:49,053 writing top-level names to /tmp/pip-modern-metadata-_m95dnqe/Pgenlib.egg-info/top_level.txt 2023-09-22T15:19:49,055 writing manifest file '/tmp/pip-modern-metadata-_m95dnqe/Pgenlib.egg-info/SOURCES.txt' 2023-09-22T15:19:49,072 dependency /tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:49,072 dependency /tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:49,073 dependency /tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:49,073 dependency /tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:49,074 dependency /tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:19:49,078 reading manifest file '/tmp/pip-modern-metadata-_m95dnqe/Pgenlib.egg-info/SOURCES.txt' 2023-09-22T15:19:49,080 reading manifest template 'MANIFEST.in' 2023-09-22T15:19:49,083 adding license file 'LICENSE' 2023-09-22T15:19:49,085 writing manifest file '/tmp/pip-modern-metadata-_m95dnqe/Pgenlib.egg-info/SOURCES.txt' 2023-09-22T15:19:49,086 creating '/tmp/pip-modern-metadata-_m95dnqe/Pgenlib-0.82.1.dist-info' 2023-09-22T15:19:49,310 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-22T15:19:49,315 Source in /tmp/pip-wheel-e6zv4ze_/pgenlib_5748da0c7ffd4510a0edc0306021d53c has version 0.82.1, which satisfies requirement pgenlib==0.82.1 from https://files.pythonhosted.org/packages/9b/d1/73c8eb879691b5ef443cf3c26e801590a7eac657264f80538c7541266fa8/Pgenlib-0.82.1.tar.gz 2023-09-22T15:19:49,316 Removed pgenlib==0.82.1 from https://files.pythonhosted.org/packages/9b/d1/73c8eb879691b5ef443cf3c26e801590a7eac657264f80538c7541266fa8/Pgenlib-0.82.1.tar.gz from build tracker '/tmp/pip-build-tracker-csiw06i5' 2023-09-22T15:19:49,321 Created temporary directory: /tmp/pip-unpack-5xp8wbep 2023-09-22T15:19:49,323 Created temporary directory: /tmp/pip-unpack-a0v_l5s1 2023-09-22T15:19:49,325 Building wheels for collected packages: pgenlib 2023-09-22T15:19:49,329 Created temporary directory: /tmp/pip-wheel-ajhbwski 2023-09-22T15:19:49,330 Destination directory: /tmp/pip-wheel-ajhbwski 2023-09-22T15:19:49,332 Building wheel for pgenlib (pyproject.toml): started 2023-09-22T15:19:49,333 Running command Building wheel for pgenlib (pyproject.toml) 2023-09-22T15:19:50,764 running bdist_wheel 2023-09-22T15:19:50,808 running build 2023-09-22T15:19:50,809 running build_ext 2023-09-22T15:19:50,815 building 'pgenlib' extension 2023-09-22T15:19:50,815 creating build 2023-09-22T15:19:50,816 creating build/temp.linux-armv7l-cpython-311 2023-09-22T15:19:50,816 creating build/temp.linux-armv7l-cpython-311/src 2023-09-22T15:19:50,817 creating build/temp.linux-armv7l-cpython-311/src/pgenlib 2023-09-22T15:19:50,818 creating build/temp.linux-armv7l-cpython-311/src/plink2 2023-09-22T15:19:50,819 creating build/temp.linux-armv7l-cpython-311/src/plink2/include 2023-09-22T15:19:50,820 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/pgenlib/pgenlib.cpp -o build/temp.linux-armv7l-cpython-311/src/pgenlib/pgenlib.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-22T15:19:51,090 In file included from /tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2023-09-22T15:19:51,090 from /tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-22T15:19:51,091 from /tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-22T15:19:51,091 from src/pgenlib/pgenlib.cpp:1208: 2023-09-22T15:19:51,092 /tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-22T15:19:51,092 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-22T15:19:51,093 | ^~~~~~~ 2023-09-22T15:19:51,153 src/pgenlib/pgenlib.cpp:1459: warning: "likely" redefined 2023-09-22T15:19:51,153 1459 | #define likely(x) __builtin_expect(!!(x), 1) 2023-09-22T15:19:51,154 | 2023-09-22T15:19:51,154 In file included from src/pgenlib/../plink2/include/plink2_bits.h:23, 2023-09-22T15:19:51,155 from src/pgenlib/../plink2/include/pgenlib_misc.h:77, 2023-09-22T15:19:51,155 from src/pgenlib/../plink2/pgenlib_ffi_support.h:20, 2023-09-22T15:19:51,156 from src/pgenlib/pgenlib.cpp:1213: 2023-09-22T15:19:51,156 src/pgenlib/../plink2/include/plink2_base.h:252: note: this is the location of the previous definition 2023-09-22T15:19:51,157 252 | # define likely(expr) __builtin_expect(!!(expr), 1) 2023-09-22T15:19:51,158 | 2023-09-22T15:19:51,158 src/pgenlib/pgenlib.cpp:1460: warning: "unlikely" redefined 2023-09-22T15:19:51,159 1460 | #define unlikely(x) __builtin_expect(!!(x), 0) 2023-09-22T15:19:51,159 | 2023-09-22T15:19:51,160 src/pgenlib/../plink2/include/plink2_base.h:253: note: this is the location of the previous definition 2023-09-22T15:19:51,160 253 | # define unlikely(expr) __builtin_expect(!!(expr), 0) 2023-09-22T15:19:51,161 | 2023-09-22T15:19:52,359 src/pgenlib/pgenlib.cpp: In function ‘int __pyx_pw_7pgenlib_10PgenReader_1__cinit__(PyObject*, PyObject*, PyObject*)’: 2023-09-22T15:19:52,359 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,360 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,361 | ^ 2023-09-22T15:19:52,362 src/pgenlib/pgenlib.cpp:6973:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,363 6973 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,363 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,364 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,365 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,365 | ^ 2023-09-22T15:19:52,366 src/pgenlib/pgenlib.cpp:6975:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,367 6975 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,368 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,368 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,369 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,370 | ^ 2023-09-22T15:19:52,370 src/pgenlib/pgenlib.cpp:6977:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,371 6977 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,371 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,372 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,372 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,373 | ^ 2023-09-22T15:19:52,373 src/pgenlib/pgenlib.cpp:6979:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,374 6979 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,374 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,375 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,375 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,376 | ^ 2023-09-22T15:19:52,376 src/pgenlib/pgenlib.cpp:6992:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,377 6992 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,377 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,378 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,379 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,379 | ^ 2023-09-22T15:19:52,380 src/pgenlib/pgenlib.cpp:6999:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,381 6999 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,381 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,382 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,383 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,384 | ^ 2023-09-22T15:19:52,384 src/pgenlib/pgenlib.cpp:7006:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,385 7006 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,386 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,387 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,387 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,388 | ^ 2023-09-22T15:19:52,389 src/pgenlib/pgenlib.cpp:7021:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,389 7021 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,390 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,390 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,391 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,392 | ^ 2023-09-22T15:19:52,393 src/pgenlib/pgenlib.cpp:7023:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,393 7023 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,394 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,395 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,396 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,397 | ^ 2023-09-22T15:19:52,397 src/pgenlib/pgenlib.cpp:7025:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,398 7025 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,398 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,444 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read*)’: 2023-09-22T15:19:52,445 src/pgenlib/pgenlib.cpp:9128:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,445 9128 | __pyx_t_8 = ((__pyx_t_10[0]) < __pyx_v_subset_size); 2023-09-22T15:19:52,446 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,467 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_11read(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:52,468 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,468 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,468 | ^ 2023-09-22T15:19:52,469 src/pgenlib/pgenlib.cpp:9484:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,470 9484 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,470 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,471 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,472 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,473 | ^ 2023-09-22T15:19:52,473 src/pgenlib/pgenlib.cpp:9486:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,474 9486 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,475 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,476 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,477 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,477 | ^ 2023-09-22T15:19:52,478 src/pgenlib/pgenlib.cpp:9488:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,479 9488 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,479 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,480 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,481 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,481 | ^ 2023-09-22T15:19:52,482 src/pgenlib/pgenlib.cpp:9501:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,483 9501 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,483 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,484 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,485 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,486 | ^ 2023-09-22T15:19:52,486 src/pgenlib/pgenlib.cpp:9511:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,487 9511 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,488 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,489 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,489 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,490 | ^ 2023-09-22T15:19:52,490 src/pgenlib/pgenlib.cpp:9526:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,491 9526 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,491 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,497 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages*)’: 2023-09-22T15:19:52,498 src/pgenlib/pgenlib.cpp:9819:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,498 9819 | __pyx_t_8 = ((__pyx_t_10[0]) < __pyx_v_subset_size); 2023-09-22T15:19:52,499 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,517 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_13read_dosages(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:52,518 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,518 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,519 | ^ 2023-09-22T15:19:52,519 src/pgenlib/pgenlib.cpp:10115:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,520 10115 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,521 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,521 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,522 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,523 | ^ 2023-09-22T15:19:52,524 src/pgenlib/pgenlib.cpp:10117:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,524 10117 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,525 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,526 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,527 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,527 | ^ 2023-09-22T15:19:52,528 src/pgenlib/pgenlib.cpp:10119:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,528 10119 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,529 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,530 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,531 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,531 | ^ 2023-09-22T15:19:52,532 src/pgenlib/pgenlib.cpp:10132:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,533 10132 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,533 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,534 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,535 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,536 | ^ 2023-09-22T15:19:52,537 src/pgenlib/pgenlib.cpp:10142:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,537 10142 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,538 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,538 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,539 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,539 | ^ 2023-09-22T15:19:52,540 src/pgenlib/pgenlib.cpp:10157:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,540 10157 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,541 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,546 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int)’: 2023-09-22T15:19:52,546 src/pgenlib/pgenlib.cpp:10417:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,547 10417 | __pyx_t_7 = ((__pyx_t_9[0]) < __pyx_v_subset_size); 2023-09-22T15:19:52,547 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,559 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_15read_alleles(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:52,560 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,560 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,561 | ^ 2023-09-22T15:19:52,562 src/pgenlib/pgenlib.cpp:10632:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,563 10632 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,563 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,564 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,565 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,566 | ^ 2023-09-22T15:19:52,566 src/pgenlib/pgenlib.cpp:10634:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,567 10634 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,568 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,568 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,569 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,570 | ^ 2023-09-22T15:19:52,570 src/pgenlib/pgenlib.cpp:10647:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,571 10647 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,572 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,584 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, PyArrayObject*, int)’: 2023-09-22T15:19:52,584 src/pgenlib/pgenlib.cpp:10945:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,585 10945 | __pyx_t_7 = ((__pyx_t_9[0]) < (2 * __pyx_v_subset_size)); 2023-09-22T15:19:52,586 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,589 src/pgenlib/pgenlib.cpp:11003:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,590 11003 | __pyx_t_7 = ((__pyx_t_9[0]) < __pyx_v_subset_size); 2023-09-22T15:19:52,591 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,605 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_17read_alleles_and_phasepresent(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:52,606 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,606 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,607 | ^ 2023-09-22T15:19:52,607 src/pgenlib/pgenlib.cpp:11240:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,608 11240 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,608 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,608 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,609 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,609 | ^ 2023-09-22T15:19:52,610 src/pgenlib/pgenlib.cpp:11242:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,611 11242 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,611 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,611 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,612 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,613 | ^ 2023-09-22T15:19:52,613 src/pgenlib/pgenlib.cpp:11244:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,614 11244 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,615 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,615 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,616 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,617 | ^ 2023-09-22T15:19:52,618 src/pgenlib/pgenlib.cpp:11257:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,618 11257 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,619 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,620 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,621 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,621 | ^ 2023-09-22T15:19:52,622 src/pgenlib/pgenlib.cpp:11267:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,623 11267 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,623 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,630 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal8(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal8*)’: 2023-09-22T15:19:52,630 src/pgenlib/pgenlib.cpp:11546:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,631 11546 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:52,632 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,635 src/pgenlib/pgenlib.cpp:11604:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,636 11604 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2023-09-22T15:19:52,637 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,649 src/pgenlib/pgenlib.cpp:11831:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,649 11831 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_subset_size); 2023-09-22T15:19:52,650 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,654 src/pgenlib/pgenlib.cpp:11889:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,654 11889 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:52,655 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,674 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal32(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal32*)’: 2023-09-22T15:19:52,674 src/pgenlib/pgenlib.cpp:12491:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,675 12491 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:52,675 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,679 src/pgenlib/pgenlib.cpp:12549:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,680 12549 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2023-09-22T15:19:52,681 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,692 src/pgenlib/pgenlib.cpp:12776:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,693 12776 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_subset_size); 2023-09-22T15:19:52,694 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,698 src/pgenlib/pgenlib.cpp:12834:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,698 12834 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:52,699 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,717 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal64(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal64*)’: 2023-09-22T15:19:52,718 src/pgenlib/pgenlib.cpp:13436:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,719 13436 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:52,719 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,723 src/pgenlib/pgenlib.cpp:13494:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,724 13494 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2023-09-22T15:19:52,724 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,736 src/pgenlib/pgenlib.cpp:13721:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,737 13721 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_subset_size); 2023-09-22T15:19:52,737 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,741 src/pgenlib/pgenlib.cpp:13779:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,742 13779 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:52,742 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,782 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_19read_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:52,783 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,783 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,784 | ^ 2023-09-22T15:19:52,784 src/pgenlib/pgenlib.cpp:14628:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,785 14628 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,785 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,786 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,786 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,787 | ^ 2023-09-22T15:19:52,787 src/pgenlib/pgenlib.cpp:14630:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,788 14630 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,788 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,789 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,790 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,791 | ^ 2023-09-22T15:19:52,791 src/pgenlib/pgenlib.cpp:14632:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,792 14632 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,793 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,793 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,794 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,795 | ^ 2023-09-22T15:19:52,795 src/pgenlib/pgenlib.cpp:14634:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,796 14634 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,797 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,797 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,798 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,799 | ^ 2023-09-22T15:19:52,799 src/pgenlib/pgenlib.cpp:14636:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,800 14636 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,800 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,801 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,802 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,803 | ^ 2023-09-22T15:19:52,803 src/pgenlib/pgenlib.cpp:14649:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,804 14649 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,805 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,805 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,806 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,806 | ^ 2023-09-22T15:19:52,807 src/pgenlib/pgenlib.cpp:14659:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,807 14659 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,808 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,808 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,808 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,809 | ^ 2023-09-22T15:19:52,809 src/pgenlib/pgenlib.cpp:14669:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,810 14669 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,810 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,811 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,811 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,812 | ^ 2023-09-22T15:19:52,813 src/pgenlib/pgenlib.cpp:14676:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,813 14676 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,814 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,815 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,815 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,816 | ^ 2023-09-22T15:19:52,817 src/pgenlib/pgenlib.cpp:14691:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,818 14691 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,818 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,819 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:52,820 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:52,821 | ^ 2023-09-22T15:19:52,821 src/pgenlib/pgenlib.cpp:14693:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:52,822 14693 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:52,823 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,823 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal8(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal8*)’: 2023-09-22T15:19:52,824 src/pgenlib/pgenlib.cpp:14961:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,825 14961 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:52,825 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,829 src/pgenlib/pgenlib.cpp:15019:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,830 15019 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_subset_size); 2023-09-22T15:19:52,831 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,843 src/pgenlib/pgenlib.cpp:15262:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,844 15262 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_subset_size); 2023-09-22T15:19:52,844 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,855 src/pgenlib/pgenlib.cpp:15320:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,855 15320 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:52,856 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,882 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal32(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal32*)’: 2023-09-22T15:19:52,882 src/pgenlib/pgenlib.cpp:16019:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,883 16019 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:52,883 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,887 src/pgenlib/pgenlib.cpp:16077:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,888 16077 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_subset_size); 2023-09-22T15:19:52,888 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,901 src/pgenlib/pgenlib.cpp:16320:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,901 16320 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_subset_size); 2023-09-22T15:19:52,902 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,906 src/pgenlib/pgenlib.cpp:16378:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,907 16378 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:52,907 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,932 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal64(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal64*)’: 2023-09-22T15:19:52,933 src/pgenlib/pgenlib.cpp:17077:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,934 17077 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:52,934 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,938 src/pgenlib/pgenlib.cpp:17135:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,938 17135 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_subset_size); 2023-09-22T15:19:52,939 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,951 src/pgenlib/pgenlib.cpp:17378:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,952 17378 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_subset_size); 2023-09-22T15:19:52,953 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,957 src/pgenlib/pgenlib.cpp:17436:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:52,957 17436 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:52,958 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:52,999 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_21read_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:53,000 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,000 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,001 | ^ 2023-09-22T15:19:53,001 src/pgenlib/pgenlib.cpp:18312:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,002 18312 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,002 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,003 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,003 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,004 | ^ 2023-09-22T15:19:53,004 src/pgenlib/pgenlib.cpp:18314:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,005 18314 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,005 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,006 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,006 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,007 | ^ 2023-09-22T15:19:53,008 src/pgenlib/pgenlib.cpp:18316:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,008 18316 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,009 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,010 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,010 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,011 | ^ 2023-09-22T15:19:53,012 src/pgenlib/pgenlib.cpp:18318:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,012 18318 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,013 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,014 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,014 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,015 | ^ 2023-09-22T15:19:53,015 src/pgenlib/pgenlib.cpp:18331:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,016 18331 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,017 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,017 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,018 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,019 | ^ 2023-09-22T15:19:53,019 src/pgenlib/pgenlib.cpp:18341:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,020 18341 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,021 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,021 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,022 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,022 | ^ 2023-09-22T15:19:53,023 src/pgenlib/pgenlib.cpp:18348:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,023 18348 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,024 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,024 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,025 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,025 | ^ 2023-09-22T15:19:53,025 src/pgenlib/pgenlib.cpp:18363:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,026 18363 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,027 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,027 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,028 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,028 | ^ 2023-09-22T15:19:53,029 src/pgenlib/pgenlib.cpp:18365:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,030 18365 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,030 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,047 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_range(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_range*)’: 2023-09-22T15:19:53,048 src/pgenlib/pgenlib.cpp:18788:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,049 18788 | __pyx_t_9 = ((__pyx_t_14[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:53,050 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,053 src/pgenlib/pgenlib.cpp:18846:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,054 18846 | __pyx_t_9 = ((__pyx_t_14[1]) < (2 * __pyx_v_subset_size)); 2023-09-22T15:19:53,055 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,068 src/pgenlib/pgenlib.cpp:19085:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,068 19085 | __pyx_t_9 = ((__pyx_t_14[0]) < (2 * __pyx_v_subset_size)); 2023-09-22T15:19:53,069 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,073 src/pgenlib/pgenlib.cpp:19143:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,074 19143 | __pyx_t_9 = ((__pyx_t_14[1]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:53,075 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,100 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_23read_alleles_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:53,100 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,101 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,102 | ^ 2023-09-22T15:19:53,102 src/pgenlib/pgenlib.cpp:19809:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,103 19809 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,103 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,104 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,104 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,105 | ^ 2023-09-22T15:19:53,105 src/pgenlib/pgenlib.cpp:19811:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,106 19811 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,106 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,107 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,107 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,108 | ^ 2023-09-22T15:19:53,108 src/pgenlib/pgenlib.cpp:19813:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,109 19813 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,109 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,110 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,110 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,111 | ^ 2023-09-22T15:19:53,111 src/pgenlib/pgenlib.cpp:19815:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,112 19815 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,113 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,113 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,114 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,115 | ^ 2023-09-22T15:19:53,115 src/pgenlib/pgenlib.cpp:19828:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,116 19828 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,116 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,117 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,118 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,118 | ^ 2023-09-22T15:19:53,119 src/pgenlib/pgenlib.cpp:19838:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,120 19838 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,120 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,121 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,121 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,122 | ^ 2023-09-22T15:19:53,123 src/pgenlib/pgenlib.cpp:19848:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,123 19848 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,124 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,125 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,126 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,127 | ^ 2023-09-22T15:19:53,127 src/pgenlib/pgenlib.cpp:19863:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,128 19863 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,128 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,141 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_list(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_list*)’: 2023-09-22T15:19:53,141 src/pgenlib/pgenlib.cpp:20240:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,142 20240 | __pyx_t_12 = ((__pyx_t_11[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:53,142 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,146 src/pgenlib/pgenlib.cpp:20298:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,147 20298 | __pyx_t_12 = ((__pyx_t_11[1]) < (2 * __pyx_v_subset_size)); 2023-09-22T15:19:53,147 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,160 src/pgenlib/pgenlib.cpp:20541:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,161 20541 | __pyx_t_12 = ((__pyx_t_11[0]) < (2 * __pyx_v_subset_size)); 2023-09-22T15:19:53,161 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,166 src/pgenlib/pgenlib.cpp:20599:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,166 20599 | __pyx_t_12 = ((__pyx_t_11[1]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:53,167 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,195 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_25read_alleles_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:53,196 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,196 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,197 | ^ 2023-09-22T15:19:53,198 src/pgenlib/pgenlib.cpp:21306:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,198 21306 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,199 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,199 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,200 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,201 | ^ 2023-09-22T15:19:53,201 src/pgenlib/pgenlib.cpp:21308:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,202 21308 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,202 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,203 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,204 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,204 | ^ 2023-09-22T15:19:53,205 src/pgenlib/pgenlib.cpp:21310:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,206 21310 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,206 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,207 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,207 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,208 | ^ 2023-09-22T15:19:53,208 src/pgenlib/pgenlib.cpp:21323:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,209 21323 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,209 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,210 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,210 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,211 | ^ 2023-09-22T15:19:53,211 src/pgenlib/pgenlib.cpp:21333:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,212 21333 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,212 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,214 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,215 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,215 | ^ 2023-09-22T15:19:53,216 src/pgenlib/pgenlib.cpp:21348:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,217 21348 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,217 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,237 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent_range(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_and_phasepresent_range*)’: 2023-09-22T15:19:53,237 src/pgenlib/pgenlib.cpp:21761:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,238 21761 | __pyx_t_9 = ((__pyx_t_14[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:53,239 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,242 src/pgenlib/pgenlib.cpp:21819:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,243 21819 | __pyx_t_9 = ((__pyx_t_14[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:53,244 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,248 src/pgenlib/pgenlib.cpp:21877:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,249 21877 | __pyx_t_9 = ((__pyx_t_14[1]) < (2 * __pyx_v_subset_size)); 2023-09-22T15:19:53,249 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,253 src/pgenlib/pgenlib.cpp:21935:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,254 21935 | __pyx_t_9 = ((__pyx_t_14[1]) < __pyx_v_subset_size); 2023-09-22T15:19:53,255 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,280 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_27read_alleles_and_phasepresent_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:53,280 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,281 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,282 | ^ 2023-09-22T15:19:53,282 src/pgenlib/pgenlib.cpp:22227:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,283 22227 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,283 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,284 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,284 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,285 | ^ 2023-09-22T15:19:53,285 src/pgenlib/pgenlib.cpp:22229:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,285 22229 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,286 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,286 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,287 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,287 | ^ 2023-09-22T15:19:53,288 src/pgenlib/pgenlib.cpp:22231:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,288 22231 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,289 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,290 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,290 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,291 | ^ 2023-09-22T15:19:53,292 src/pgenlib/pgenlib.cpp:22233:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,292 22233 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,293 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,293 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,294 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,295 | ^ 2023-09-22T15:19:53,295 src/pgenlib/pgenlib.cpp:22235:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,296 22235 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,296 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,298 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,298 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,299 | ^ 2023-09-22T15:19:53,300 src/pgenlib/pgenlib.cpp:22248:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,300 22248 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,301 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,302 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,303 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,303 | ^ 2023-09-22T15:19:53,304 src/pgenlib/pgenlib.cpp:22258:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,304 22258 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,305 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,306 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,307 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,308 | ^ 2023-09-22T15:19:53,309 src/pgenlib/pgenlib.cpp:22268:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,309 22268 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,310 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,311 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,311 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,312 | ^ 2023-09-22T15:19:53,312 src/pgenlib/pgenlib.cpp:22278:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,313 22278 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,313 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,315 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,316 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,317 | ^ 2023-09-22T15:19:53,317 src/pgenlib/pgenlib.cpp:22293:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,318 22293 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,318 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,336 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent_list(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_and_phasepresent_list*)’: 2023-09-22T15:19:53,337 src/pgenlib/pgenlib.cpp:22670:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,338 22670 | __pyx_t_12 = ((__pyx_t_11[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:53,338 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,342 src/pgenlib/pgenlib.cpp:22728:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,343 22728 | __pyx_t_12 = ((__pyx_t_11[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:53,343 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,348 src/pgenlib/pgenlib.cpp:22786:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,349 22786 | __pyx_t_12 = ((__pyx_t_11[1]) < (2 * __pyx_v_subset_size)); 2023-09-22T15:19:53,349 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,353 src/pgenlib/pgenlib.cpp:22844:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,354 22844 | __pyx_t_12 = ((__pyx_t_11[1]) < __pyx_v_subset_size); 2023-09-22T15:19:53,355 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,379 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_29read_alleles_and_phasepresent_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:53,380 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,380 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,381 | ^ 2023-09-22T15:19:53,381 src/pgenlib/pgenlib.cpp:23195:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,382 23195 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,383 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,383 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,384 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,384 | ^ 2023-09-22T15:19:53,385 src/pgenlib/pgenlib.cpp:23197:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,385 23197 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,386 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,386 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,387 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,387 | ^ 2023-09-22T15:19:53,388 src/pgenlib/pgenlib.cpp:23199:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,388 23199 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,389 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,390 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,390 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,391 | ^ 2023-09-22T15:19:53,391 src/pgenlib/pgenlib.cpp:23201:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,392 23201 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,392 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,394 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,395 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,396 | ^ 2023-09-22T15:19:53,396 src/pgenlib/pgenlib.cpp:23214:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,397 23214 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,397 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,399 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,400 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,400 | ^ 2023-09-22T15:19:53,401 src/pgenlib/pgenlib.cpp:23224:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,401 23224 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,402 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,404 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,404 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,405 | ^ 2023-09-22T15:19:53,405 src/pgenlib/pgenlib.cpp:23234:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,406 23234 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,407 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,408 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,409 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,409 | ^ 2023-09-22T15:19:53,410 src/pgenlib/pgenlib.cpp:23249:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,411 23249 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,411 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,460 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_31read_dosages_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:53,461 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,461 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,462 | ^ 2023-09-22T15:19:53,462 src/pgenlib/pgenlib.cpp:24349:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,463 24349 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,463 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,464 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,464 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,465 | ^ 2023-09-22T15:19:53,465 src/pgenlib/pgenlib.cpp:24351:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,466 24351 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,466 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,467 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,468 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,469 | ^ 2023-09-22T15:19:53,469 src/pgenlib/pgenlib.cpp:24353:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,470 24353 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,470 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,471 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,472 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,472 | ^ 2023-09-22T15:19:53,473 src/pgenlib/pgenlib.cpp:24355:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,473 24355 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,474 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,475 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,475 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,476 | ^ 2023-09-22T15:19:53,476 src/pgenlib/pgenlib.cpp:24357:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,477 24357 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,477 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,479 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,480 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,480 | ^ 2023-09-22T15:19:53,481 src/pgenlib/pgenlib.cpp:24370:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,481 24370 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,482 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,484 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,484 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,485 | ^ 2023-09-22T15:19:53,486 src/pgenlib/pgenlib.cpp:24380:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,486 24380 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,487 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,488 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,489 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,489 | ^ 2023-09-22T15:19:53,490 src/pgenlib/pgenlib.cpp:24390:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,490 24390 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,491 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,492 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,493 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,493 | ^ 2023-09-22T15:19:53,494 src/pgenlib/pgenlib.cpp:24397:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,495 24397 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,495 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,497 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,498 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,498 | ^ 2023-09-22T15:19:53,499 src/pgenlib/pgenlib.cpp:24412:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,499 24412 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,500 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,501 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,501 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,502 | ^ 2023-09-22T15:19:53,503 src/pgenlib/pgenlib.cpp:24414:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,503 24414 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,504 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,513 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages_list_internal32(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages_list_internal32*)’: 2023-09-22T15:19:53,514 src/pgenlib/pgenlib.cpp:24684:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,514 24684 | __pyx_t_7 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:53,515 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,518 src/pgenlib/pgenlib.cpp:24742:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,519 24742 | __pyx_t_7 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2023-09-22T15:19:53,520 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,541 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages_list_internal64(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages_list_internal64*)’: 2023-09-22T15:19:53,542 src/pgenlib/pgenlib.cpp:25207:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,543 25207 | __pyx_t_7 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2023-09-22T15:19:53,544 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,547 src/pgenlib/pgenlib.cpp:25265:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-22T15:19:53,547 25265 | __pyx_t_7 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2023-09-22T15:19:53,548 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,584 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_33read_dosages_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:53,585 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,585 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,586 | ^ 2023-09-22T15:19:53,586 src/pgenlib/pgenlib.cpp:25859:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,587 25859 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,587 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,588 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,589 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,589 | ^ 2023-09-22T15:19:53,590 src/pgenlib/pgenlib.cpp:25861:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,590 25861 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,591 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,592 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,593 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,593 | ^ 2023-09-22T15:19:53,594 src/pgenlib/pgenlib.cpp:25863:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,595 25863 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,595 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,596 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,597 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,598 | ^ 2023-09-22T15:19:53,598 src/pgenlib/pgenlib.cpp:25865:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,599 25865 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,599 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,601 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,602 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,602 | ^ 2023-09-22T15:19:53,603 src/pgenlib/pgenlib.cpp:25878:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,603 25878 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,604 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,605 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,606 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,607 | ^ 2023-09-22T15:19:53,607 src/pgenlib/pgenlib.cpp:25888:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,608 25888 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,609 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,609 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,610 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,610 | ^ 2023-09-22T15:19:53,611 src/pgenlib/pgenlib.cpp:25895:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,611 25895 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,612 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,614 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,615 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,615 | ^ 2023-09-22T15:19:53,616 src/pgenlib/pgenlib.cpp:25910:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,616 25910 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,617 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,618 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,618 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,619 | ^ 2023-09-22T15:19:53,620 src/pgenlib/pgenlib.cpp:25912:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,620 25912 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,621 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,643 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_35count(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:53,644 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,645 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,645 | ^ 2023-09-22T15:19:53,646 src/pgenlib/pgenlib.cpp:26374:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,647 26374 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,647 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,648 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,649 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,649 | ^ 2023-09-22T15:19:53,650 src/pgenlib/pgenlib.cpp:26376:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,650 26376 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,651 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,652 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,652 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,653 | ^ 2023-09-22T15:19:53,653 src/pgenlib/pgenlib.cpp:26378:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,654 26378 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,655 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,655 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,656 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,657 | ^ 2023-09-22T15:19:53,657 src/pgenlib/pgenlib.cpp:26391:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,658 26391 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,658 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,660 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,660 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,661 | ^ 2023-09-22T15:19:53,661 src/pgenlib/pgenlib.cpp:26401:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,662 26401 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,662 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,665 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,665 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,666 | ^ 2023-09-22T15:19:53,666 src/pgenlib/pgenlib.cpp:26416:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,667 26416 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,668 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,683 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_37change_sample_subset(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:53,684 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,685 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,685 | ^ 2023-09-22T15:19:53,686 src/pgenlib/pgenlib.cpp:26734:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,687 26734 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,687 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,689 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,690 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,690 | ^ 2023-09-22T15:19:53,691 src/pgenlib/pgenlib.cpp:26754:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,692 26754 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,692 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,714 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_41__exit__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:53,715 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,715 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,716 | ^ 2023-09-22T15:19:53,716 src/pgenlib/pgenlib.cpp:27418:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,717 27418 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,718 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,718 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,719 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,719 | ^ 2023-09-22T15:19:53,720 src/pgenlib/pgenlib.cpp:27420:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,720 27420 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,721 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,722 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,722 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,723 | ^ 2023-09-22T15:19:53,723 src/pgenlib/pgenlib.cpp:27422:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,724 27422 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,724 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,727 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,727 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,728 | ^ 2023-09-22T15:19:53,728 src/pgenlib/pgenlib.cpp:27435:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,729 27435 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,729 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,731 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,732 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,732 | ^ 2023-09-22T15:19:53,733 src/pgenlib/pgenlib.cpp:27445:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,734 27445 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,734 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,745 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_47__setstate_cython__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:53,746 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,746 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,747 | ^ 2023-09-22T15:19:53,747 src/pgenlib/pgenlib.cpp:27881:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,748 27881 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,749 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,757 src/pgenlib/pgenlib.cpp: In function ‘int __pyx_pw_7pgenlib_10PgenWriter_1__cinit__(PyObject*, PyObject*, PyObject*)’: 2023-09-22T15:19:53,757 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,758 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,759 | ^ 2023-09-22T15:19:53,759 src/pgenlib/pgenlib.cpp:28083:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,760 28083 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,760 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,761 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,762 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,762 | ^ 2023-09-22T15:19:53,763 src/pgenlib/pgenlib.cpp:28085:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,763 28085 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,764 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,765 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,765 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,766 | ^ 2023-09-22T15:19:53,767 src/pgenlib/pgenlib.cpp:28087:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,767 28087 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,767 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,768 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,769 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,769 | ^ 2023-09-22T15:19:53,770 src/pgenlib/pgenlib.cpp:28089:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,770 28089 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,771 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,772 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,773 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,773 | ^ 2023-09-22T15:19:53,774 src/pgenlib/pgenlib.cpp:28091:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,774 28091 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,775 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,776 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,777 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,777 | ^ 2023-09-22T15:19:53,778 src/pgenlib/pgenlib.cpp:28093:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,778 28093 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,779 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,780 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,781 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,781 | ^ 2023-09-22T15:19:53,782 src/pgenlib/pgenlib.cpp:28095:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,782 28095 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,783 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,784 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,784 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,785 | ^ 2023-09-22T15:19:53,786 src/pgenlib/pgenlib.cpp:28097:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,786 28097 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,787 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,788 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,789 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,790 | ^ 2023-09-22T15:19:53,790 src/pgenlib/pgenlib.cpp:28110:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,791 28110 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,791 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,793 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,794 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,795 | ^ 2023-09-22T15:19:53,795 src/pgenlib/pgenlib.cpp:28120:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,796 28120 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,796 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,798 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,799 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,799 | ^ 2023-09-22T15:19:53,800 src/pgenlib/pgenlib.cpp:28130:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,800 28130 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,800 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,803 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,803 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,804 | ^ 2023-09-22T15:19:53,804 src/pgenlib/pgenlib.cpp:28140:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,805 28140 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,805 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,807 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,808 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,808 | ^ 2023-09-22T15:19:53,809 src/pgenlib/pgenlib.cpp:28147:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,810 28147 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,810 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,812 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,812 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,813 | ^ 2023-09-22T15:19:53,814 src/pgenlib/pgenlib.cpp:28154:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,814 28154 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,815 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,816 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,817 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,818 | ^ 2023-09-22T15:19:53,818 src/pgenlib/pgenlib.cpp:28161:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,819 28161 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,819 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,821 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,822 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,823 | ^ 2023-09-22T15:19:53,823 src/pgenlib/pgenlib.cpp:28176:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,824 28176 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,825 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,825 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,826 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,827 | ^ 2023-09-22T15:19:53,828 src/pgenlib/pgenlib.cpp:28178:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,828 28178 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,828 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,829 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,830 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,831 | ^ 2023-09-22T15:19:53,831 src/pgenlib/pgenlib.cpp:28180:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,832 28180 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,832 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,834 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,835 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,835 | ^ 2023-09-22T15:19:53,836 src/pgenlib/pgenlib.cpp:28182:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,837 28182 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,837 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,881 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_5append_biallelic(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:53,882 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,883 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,883 | ^ 2023-09-22T15:19:53,884 src/pgenlib/pgenlib.cpp:29415:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,885 29415 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,885 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,906 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_7append_alleles(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:53,906 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,907 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,907 | ^ 2023-09-22T15:19:53,908 src/pgenlib/pgenlib.cpp:29880:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,909 29880 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,909 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,910 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,911 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,911 | ^ 2023-09-22T15:19:53,912 src/pgenlib/pgenlib.cpp:29882:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,912 29882 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,913 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,915 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,915 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,916 | ^ 2023-09-22T15:19:53,917 src/pgenlib/pgenlib.cpp:29895:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,918 29895 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,918 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,920 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,921 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,921 | ^ 2023-09-22T15:19:53,922 src/pgenlib/pgenlib.cpp:29910:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,922 29910 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,923 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,946 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_9append_partially_phased(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:53,946 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,947 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,947 | ^ 2023-09-22T15:19:53,948 src/pgenlib/pgenlib.cpp:30369:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,948 30369 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,949 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,950 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,950 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,951 | ^ 2023-09-22T15:19:53,951 src/pgenlib/pgenlib.cpp:30371:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,952 30371 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,952 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,955 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,955 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,956 | ^ 2023-09-22T15:19:53,957 src/pgenlib/pgenlib.cpp:30384:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,957 30384 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,958 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:53,994 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_11append_dosages(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:53,995 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:53,995 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:53,996 | ^ 2023-09-22T15:19:53,997 src/pgenlib/pgenlib.cpp:31152:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:53,998 31152 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:53,998 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,017 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_13append_biallelic_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:54,018 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,018 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,019 | ^ 2023-09-22T15:19:54,020 src/pgenlib/pgenlib.cpp:31532:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,021 31532 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,022 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,047 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_15append_alleles_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:54,048 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,049 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,049 | ^ 2023-09-22T15:19:54,050 src/pgenlib/pgenlib.cpp:32104:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,050 32104 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,050 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,051 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,052 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,052 | ^ 2023-09-22T15:19:54,053 src/pgenlib/pgenlib.cpp:32106:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,053 32106 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,054 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,056 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,057 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,058 | ^ 2023-09-22T15:19:54,058 src/pgenlib/pgenlib.cpp:32119:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,059 32119 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,059 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,062 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,063 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,064 | ^ 2023-09-22T15:19:54,064 src/pgenlib/pgenlib.cpp:32134:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,065 32134 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,066 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,090 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_17append_partially_phased_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:54,090 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,091 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,092 | ^ 2023-09-22T15:19:54,092 src/pgenlib/pgenlib.cpp:32627:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,093 32627 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,093 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,094 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,095 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,096 | ^ 2023-09-22T15:19:54,096 src/pgenlib/pgenlib.cpp:32629:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,097 32629 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,097 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,100 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,100 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,101 | ^ 2023-09-22T15:19:54,102 src/pgenlib/pgenlib.cpp:32642:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,103 32642 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,103 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,143 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_19append_dosages_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:54,143 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,144 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,144 | ^ 2023-09-22T15:19:54,145 src/pgenlib/pgenlib.cpp:33474:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,146 33474 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,146 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,173 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_23__exit__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:54,173 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,174 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,174 | ^ 2023-09-22T15:19:54,175 src/pgenlib/pgenlib.cpp:34061:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,175 34061 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,175 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,177 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,178 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,179 | ^ 2023-09-22T15:19:54,179 src/pgenlib/pgenlib.cpp:34063:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,180 34063 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,180 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,182 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,183 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,184 | ^ 2023-09-22T15:19:54,184 src/pgenlib/pgenlib.cpp:34065:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,185 34065 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,185 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,188 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,188 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,189 | ^ 2023-09-22T15:19:54,190 src/pgenlib/pgenlib.cpp:34078:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,190 34078 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,191 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,193 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,194 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,195 | ^ 2023-09-22T15:19:54,196 src/pgenlib/pgenlib.cpp:34088:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,196 34088 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,197 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,207 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_29__setstate_cython__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2023-09-22T15:19:54,208 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,209 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,209 | ^ 2023-09-22T15:19:54,210 src/pgenlib/pgenlib.cpp:34460:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,210 34460 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,211 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,380 src/pgenlib/pgenlib.cpp: In function ‘const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context*, const char*)’: 2023-09-22T15:19:54,380 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,381 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,381 | ^ 2023-09-22T15:19:54,382 src/pgenlib/pgenlib.cpp:37929:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,382 37929 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,383 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,386 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,386 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,387 | ^ 2023-09-22T15:19:54,387 src/pgenlib/pgenlib.cpp:37942:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,388 37942 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,389 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,452 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __Pyx_PyInt_MultiplyObjC(PyObject*, PyObject*, long int, int, int)’: 2023-09-22T15:19:54,453 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,453 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,454 | ^ 2023-09-22T15:19:54,455 src/pgenlib/pgenlib.cpp:39186:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,455 39186 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,456 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,458 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,459 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,459 | ^ 2023-09-22T15:19:54,460 src/pgenlib/pgenlib.cpp:39197:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,460 39197 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,461 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,464 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,465 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,465 | ^ 2023-09-22T15:19:54,466 src/pgenlib/pgenlib.cpp:39208:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,467 39208 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,467 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,470 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,471 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,472 | ^ 2023-09-22T15:19:54,472 src/pgenlib/pgenlib.cpp:39219:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,472 39219 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,473 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,476 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,477 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,477 | ^ 2023-09-22T15:19:54,478 src/pgenlib/pgenlib.cpp:39230:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,478 39230 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,479 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:19:54,482 src/pgenlib/pgenlib.cpp:549:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2023-09-22T15:19:54,483 549 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2023-09-22T15:19:54,484 | ^ 2023-09-22T15:19:54,484 src/pgenlib/pgenlib.cpp:39241:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2023-09-22T15:19:54,485 39241 | CYTHON_FALLTHROUGH; 2023-09-22T15:19:54,485 | ^~~~~~~~~~~~~~~~~~ 2023-09-22T15:20:42,192 At global scope: 2023-09-22T15:20:42,193 cc1plus: note: unrecognized command-line option ‘-Wno-macro-redefined’ may have been intended to silence earlier diagnostics 2023-09-22T15:20:44,909 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/plink2/include/pgenlib_misc.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_misc.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-22T15:20:48,658 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/plink2/include/pgenlib_read.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_read.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-22T15:21:04,537 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/plink2/include/pgenlib_write.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_write.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-22T15:21:08,416 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/plink2/include/plink2_base.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_base.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-22T15:21:08,843 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/plink2/include/plink2_bits.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_bits.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-22T15:21:11,010 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/plink2/pgenlib_ffi_support.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/pgenlib_ffi_support.o -std=c++98 -Wno-unused-function -Wno-macro-redefined 2023-09-22T15:21:12,276 creating build/lib.linux-armv7l-cpython-311 2023-09-22T15:21:12,277 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/pgenlib/pgenlib.o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_misc.o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_read.o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_write.o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_base.o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_bits.o build/temp.linux-armv7l-cpython-311/src/plink2/pgenlib_ffi_support.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pgenlib.cpython-311-arm-linux-gnueabihf.so -std=c++98 2023-09-22T15:21:12,594 installing to build/bdist.linux-armv7l/wheel 2023-09-22T15:21:12,594 running install 2023-09-22T15:21:12,619 running install_lib 2023-09-22T15:21:12,626 creating build/bdist.linux-armv7l 2023-09-22T15:21:12,627 creating build/bdist.linux-armv7l/wheel 2023-09-22T15:21:12,629 copying build/lib.linux-armv7l-cpython-311/pgenlib.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-09-22T15:21:12,735 running install_egg_info 2023-09-22T15:21:12,748 running egg_info 2023-09-22T15:21:12,756 writing src/Pgenlib.egg-info/PKG-INFO 2023-09-22T15:21:12,760 writing dependency_links to src/Pgenlib.egg-info/dependency_links.txt 2023-09-22T15:21:12,762 writing top-level names to src/Pgenlib.egg-info/top_level.txt 2023-09-22T15:21:12,766 dependency /tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:21:12,767 dependency /tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:21:12,768 dependency /tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:21:12,768 dependency /tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:21:12,769 dependency /tmp/pip-build-env-3govd_yo/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-22T15:21:12,777 reading manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-09-22T15:21:12,781 reading manifest template 'MANIFEST.in' 2023-09-22T15:21:12,784 adding license file 'LICENSE' 2023-09-22T15:21:12,787 writing manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2023-09-22T15:21:12,789 Copying src/Pgenlib.egg-info to build/bdist.linux-armv7l/wheel/Pgenlib-0.82.1-py3.11.egg-info 2023-09-22T15:21:12,798 running install_scripts 2023-09-22T15:21:12,843 creating build/bdist.linux-armv7l/wheel/Pgenlib-0.82.1.dist-info/WHEEL 2023-09-22T15:21:12,845 creating '/tmp/pip-wheel-ajhbwski/.tmp-d4lawxt2/Pgenlib-0.82.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-22T15:21:13,500 adding 'pgenlib.cpython-311-arm-linux-gnueabihf.so' 2023-09-22T15:21:13,531 adding 'Pgenlib-0.82.1.dist-info/LICENSE' 2023-09-22T15:21:13,532 adding 'Pgenlib-0.82.1.dist-info/METADATA' 2023-09-22T15:21:13,534 adding 'Pgenlib-0.82.1.dist-info/WHEEL' 2023-09-22T15:21:13,535 adding 'Pgenlib-0.82.1.dist-info/top_level.txt' 2023-09-22T15:21:13,537 adding 'Pgenlib-0.82.1.dist-info/RECORD' 2023-09-22T15:21:13,552 removing build/bdist.linux-armv7l/wheel 2023-09-22T15:21:13,722 Building wheel for pgenlib (pyproject.toml): finished with status 'done' 2023-09-22T15:21:13,764 Created wheel for pgenlib: filename=Pgenlib-0.82.1-cp311-cp311-linux_armv7l.whl size=1391916 sha256=fcca7b23c797befa1d51e949b32db523dfb431d5ac126d684d49ec454cb49180 2023-09-22T15:21:13,765 Stored in directory: /tmp/pip-ephem-wheel-cache-t5g94bi1/wheels/b3/26/e0/d61ef87476c588b50ae95250e23fc28864c2d88755fb57499d 2023-09-22T15:21:13,775 Successfully built pgenlib 2023-09-22T15:21:13,818 Removed build tracker: '/tmp/pip-build-tracker-csiw06i5'