2023-09-22T17:27:52,495 Created temporary directory: /tmp/pip-build-tracker-_6ztvgg_ 2023-09-22T17:27:52,496 Initialized build tracking at /tmp/pip-build-tracker-_6ztvgg_ 2023-09-22T17:27:52,496 Created build tracker: /tmp/pip-build-tracker-_6ztvgg_ 2023-09-22T17:27:52,497 Entered build tracker: /tmp/pip-build-tracker-_6ztvgg_ 2023-09-22T17:27:52,498 Created temporary directory: /tmp/pip-wheel-mxdtae5d 2023-09-22T17:27:52,501 Created temporary directory: /tmp/pip-ephem-wheel-cache-ksx9qg0r 2023-09-22T17:27:52,523 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-22T17:27:52,526 2 location(s) to search for versions of gencodegenes: 2023-09-22T17:27:52,526 * https://pypi.org/simple/gencodegenes/ 2023-09-22T17:27:52,526 * https://www.piwheels.org/simple/gencodegenes/ 2023-09-22T17:27:52,527 Fetching project page and analyzing links: https://pypi.org/simple/gencodegenes/ 2023-09-22T17:27:52,528 Getting page https://pypi.org/simple/gencodegenes/ 2023-09-22T17:27:52,529 Found index url https://pypi.org/simple/ 2023-09-22T17:27:52,669 Fetched page https://pypi.org/simple/gencodegenes/ as application/vnd.pypi.simple.v1+json 2023-09-22T17:27:52,688 Found link https://files.pythonhosted.org/packages/0d/12/072d7deae2b505465a3fb3c418776e4aa35aded87ec5e3a2dc8a256cf7e9/gencodegenes-0.9.15.tar.gz (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8), version: 0.9.15 2023-09-22T17:27:52,689 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/c2/c1/1eafe0aa40210568d567312798c4f38fa24e53b195d5012a481f557461bc/gencodegenes-1.0.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,689 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/7b/6b/697207f48972e939877e77546f07d0e805e4b71cf8231dbdc1133d4935e3/gencodegenes-1.0.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,690 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/a0/b4/c325425663a972a8b1e077a22eac6263ce6c1ee274e43716712e2d45c6aa/gencodegenes-1.0.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,690 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/7e/89/013d9d409beeb63031684a3438bfb7b3d0e484008e442a249456079ca2b3/gencodegenes-1.0.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,691 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/7c/3e/f75536f9af6d7e43ecd45d117b0dabdab0b3153f85a62e3ab2760005b38b/gencodegenes-1.0.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,692 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/75/13/474f8da42875f6e6ce7e3a42ccb3b33545ecbc1cf35ab6615ea9288c1609/gencodegenes-1.0.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,692 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/d7/5b/ae61ce133207b3a0eb1abc02b87c396eaa82acb645869aef05c00485fa95/gencodegenes-1.0.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,693 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/ad/1a/72bd7a3b3631920d0f1285b5f35ece5929e105cd1a9618286585efdaf634/gencodegenes-1.0.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,693 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/ef/cd/4caba0573155f328eec57c1f9292f6c304cdc73f25f9748bec7b5ac5e6f1/gencodegenes-1.0.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,694 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/b5/9e/6a869d5feaae0ad866993a0fa72a994d9b5003aa75baff4ae32b6f964960/gencodegenes-1.0.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,695 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/d5/e6/e0b9d67a234ec753559ac8fb699edea2f0409fe7d0d1c9d9670f9b72a941/gencodegenes-1.0.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,695 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/1b/48/bdad56e24c1d9b5579d92538bb062426a50630f21cfe952a0fd943e4b176/gencodegenes-1.0.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,696 Found link https://files.pythonhosted.org/packages/9a/7c/7429bf09284e7894cc06bde4f8d85b2fa0e11890f4f0952e0b0ee48621ec/gencodegenes-1.0.0.tar.gz (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8), version: 1.0.0 2023-09-22T17:27:52,697 Skipping link: No binaries permitted for gencodegenes: 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https://files.pythonhosted.org/packages/52/02/1b7215ae24decb6c99bf5a9bae4f466dfaf527667b3428bf71a9fdfb9f02/gencodegenes-1.0.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,701 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/7f/e5/f976692c94179e8157d62d06f3dac895a4865a15ef13e3d8feadc5d81f4c/gencodegenes-1.0.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,701 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/93/77/ef25556eb2081285c643e4df43bfac47dfd690d1dc6e224b25be1e65fcf2/gencodegenes-1.0.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,702 Skipping link: No binaries permitted for gencodegenes: 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https://files.pythonhosted.org/packages/ef/80/34bc48d62656740b60a3e6e0144d439b85ec909778dd2921b096b5e7b7fa/gencodegenes-1.0.1.tar.gz (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8), version: 1.0.1 2023-09-22T17:27:52,705 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/23/09/61815a38328403063615b7743109a5d15ee7bd726940d75c556d3af56f06/gencodegenes-1.0.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,705 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/d5/2a/525890ac55cb40d082db4aec4f2016aa46ad11b981ca115bf3e5576892e5/gencodegenes-1.0.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,706 Skipping link: No binaries permitted for gencodegenes: 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https://files.pythonhosted.org/packages/4d/67/9ee60f62eb6fb8b8df754bdb81dee51a232f2c4fefa449af5844906be6eb/gencodegenes-1.0.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,712 Found link https://files.pythonhosted.org/packages/ef/7f/b074963ece855ffe3fd31b20db987091bad17dc36143cbae6774742b4f5a/gencodegenes-1.0.2.tar.gz (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8), version: 1.0.2 2023-09-22T17:27:52,712 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/d7/22/73f99d4115db848db29aedd0e3cb7dcc4748760050e8e6335b23ea0f2dae/gencodegenes-1.0.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,713 Skipping link: No binaries permitted for gencodegenes: 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https://files.pythonhosted.org/packages/5a/5d/ed1541aadf1f16850a083ea2a3629a8b2f000ed88b47d7505bf4f6f7256f/gencodegenes-1.0.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,719 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/5b/a9/61a5f4be9170f61a6cc7b92bcea144efc88830c730307cd5a5b4c27749bd/gencodegenes-1.0.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,720 Found link https://files.pythonhosted.org/packages/ff/ac/672e2122b1814dccc97ee7b02cecec58c9dec4d4f38230a2d90e8aa98600/gencodegenes-1.0.4.tar.gz (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8), version: 1.0.4 2023-09-22T17:27:52,721 Skipping link: No binaries permitted for gencodegenes: 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https://files.pythonhosted.org/packages/66/47/a1102365783ef65b8a2ba3a42dfae075fe4310a1fbc0d9dd8fd1a9bc7756/gencodegenes-1.0.8.tar.gz (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8), version: 1.0.8 2023-09-22T17:27:52,752 Fetching project page and analyzing links: https://www.piwheels.org/simple/gencodegenes/ 2023-09-22T17:27:52,752 Getting page https://www.piwheels.org/simple/gencodegenes/ 2023-09-22T17:27:52,754 Found index url https://www.piwheels.org/simple/ 2023-09-22T17:27:52,922 Fetched page https://www.piwheels.org/simple/gencodegenes/ as text/html 2023-09-22T17:27:52,927 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.8-cp39-cp39-linux_armv7l.whl#sha256=7140593bae5cdbae9af965fa53fdffdf99d7976b62f476ae93943a7079260ddf (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,928 Skipping link: No binaries permitted for gencodegenes: 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https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=862e5f07d3d29a28370432a3aefa0d4d9db32953a2ea86b24164147ac414a5f3 (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,930 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=862e5f07d3d29a28370432a3aefa0d4d9db32953a2ea86b24164147ac414a5f3 (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,930 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=1449563468d1cfffe62497f27e15fbc870e8e08c0605138f04a45af6ec4b5ae1 (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,931 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=1449563468d1cfffe62497f27e15fbc870e8e08c0605138f04a45af6ec4b5ae1 (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,932 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.4-cp311-cp311-linux_armv7l.whl#sha256=f9da2241d3ebacc11c0bbc589cf002e28e10c23acedcc71409993e2180fb7ae0 (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,932 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.4-cp311-cp311-linux_armv6l.whl#sha256=f9da2241d3ebacc11c0bbc589cf002e28e10c23acedcc71409993e2180fb7ae0 (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,933 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.4-cp39-cp39-linux_armv7l.whl#sha256=e6e8caec16e08255d98aedf6166847fea938122626d4e8ba1e8d0be29391624d (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,933 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.4-cp39-cp39-linux_armv6l.whl#sha256=e6e8caec16e08255d98aedf6166847fea938122626d4e8ba1e8d0be29391624d (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,934 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=c1be1297cd529b6022e2fc2feeec8a96c9a4dcba0ddf37105d2f096d743eb640 (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,934 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=c1be1297cd529b6022e2fc2feeec8a96c9a4dcba0ddf37105d2f096d743eb640 (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,935 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=7d4f6d406625530020a94fe09af3ab9bdc5ea1d7585f3068158152e756b1bfb1 (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,935 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=7d4f6d406625530020a94fe09af3ab9bdc5ea1d7585f3068158152e756b1bfb1 (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-09-22T17:27:52,936 Skipping link: not a file: https://www.piwheels.org/simple/gencodegenes/ 2023-09-22T17:27:52,937 Skipping link: not a file: https://pypi.org/simple/gencodegenes/ 2023-09-22T17:27:52,955 Given no hashes to check 1 links for project 'gencodegenes': discarding no candidates 2023-09-22T17:27:52,973 Collecting gencodegenes==1.0.6 2023-09-22T17:27:52,976 Created temporary directory: /tmp/pip-unpack-f70oavk3 2023-09-22T17:27:53,194 Downloading gencodegenes-1.0.6.tar.gz (247 kB) 2023-09-22T17:27:53,383 Added gencodegenes==1.0.6 from https://files.pythonhosted.org/packages/75/7c/3ac05a77f620695029c8ec5e755ad4663d5a2e79042e8e0e6cf853560c82/gencodegenes-1.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-_6ztvgg_' 2023-09-22T17:27:53,388 Created temporary directory: /tmp/pip-build-env-0vahr7u4 2023-09-22T17:27:53,393 Installing build dependencies: started 2023-09-22T17:27:53,394 Running command pip subprocess to install build dependencies 2023-09-22T17:27:54,523 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-22T17:27:55,021 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-22T17:27:56,690 Collecting cython 2023-09-22T17:27:56,691 Obtaining dependency information for cython from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata 2023-09-22T17:27:56,697 Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-22T17:27:57,973 Collecting setuptools>=40.6.0 2023-09-22T17:27:57,974 Obtaining dependency information for setuptools>=40.6.0 from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-22T17:27:57,980 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-22T17:27:58,184 Collecting wheel 2023-09-22T17:27:58,201 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-22T17:27:58,389 Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB) 2023-09-22T17:27:58,433 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-22T17:28:00,925 Installing collected packages: wheel, setuptools, cython 2023-09-22T17:28:01,143 Creating /tmp/pip-build-env-0vahr7u4/overlay/local/bin 2023-09-22T17:28:01,145 changing mode of /tmp/pip-build-env-0vahr7u4/overlay/local/bin/wheel to 755 2023-09-22T17:28:06,338 changing mode of /tmp/pip-build-env-0vahr7u4/overlay/local/bin/cygdb to 755 2023-09-22T17:28:06,340 changing mode of /tmp/pip-build-env-0vahr7u4/overlay/local/bin/cython to 755 2023-09-22T17:28:06,343 changing mode of /tmp/pip-build-env-0vahr7u4/overlay/local/bin/cythonize to 755 2023-09-22T17:28:06,369 Successfully installed cython-3.0.2 setuptools-68.2.2 wheel-0.41.2 2023-09-22T17:28:06,949 Installing build dependencies: finished with status 'done' 2023-09-22T17:28:06,962 Getting requirements to build wheel: started 2023-09-22T17:28:06,963 Running command Getting requirements to build wheel 2023-09-22T17:28:10,845 warning: src/gencodegenes/gencode.pyx:81:0: Global name __genome_ matched from within class scope in contradiction to to Python 'class private name' rules. This may change in a future release. 2023-09-22T17:28:10,845 warning: src/gencodegenes/gencode.pyx:81:0: Global name __genome_ matched from within class scope in contradiction to to Python 'class private name' rules. This may change in a future release. 2023-09-22T17:28:10,967 warning: src/gencodegenes/gencode.pyx:81:0: Global name __genome_ matched from within class scope in contradiction to to Python 'class private name' rules. This may change in a future release. 2023-09-22T17:28:10,971 warning: src/gencodegenes/gencode.pyx:81:0: Global name __genome_ matched from within class scope in contradiction to to Python 'class private name' rules. This may change in a future release. 2023-09-22T17:28:13,403 Compiling src/gencodegenes/transcript.pyx because it changed. 2023-09-22T17:28:13,404 Compiling src/gencodegenes/gencode.pyx because it changed. 2023-09-22T17:28:13,404 [1/2] Cythonizing src/gencodegenes/gencode.pyx 2023-09-22T17:28:13,405 [2/2] Cythonizing src/gencodegenes/transcript.pyx 2023-09-22T17:28:13,473 running egg_info 2023-09-22T17:28:13,479 writing src/gencodegenes.egg-info/PKG-INFO 2023-09-22T17:28:13,482 writing dependency_links to src/gencodegenes.egg-info/dependency_links.txt 2023-09-22T17:28:13,485 writing requirements to src/gencodegenes.egg-info/requires.txt 2023-09-22T17:28:13,486 writing top-level names to src/gencodegenes.egg-info/top_level.txt 2023-09-22T17:28:13,517 reading manifest file 'src/gencodegenes.egg-info/SOURCES.txt' 2023-09-22T17:28:13,520 reading manifest template 'MANIFEST.in' 2023-09-22T17:28:13,527 adding license file 'LICENSE.txt' 2023-09-22T17:28:13,530 writing manifest file 'src/gencodegenes.egg-info/SOURCES.txt' 2023-09-22T17:28:13,902 Getting requirements to build wheel: finished with status 'done' 2023-09-22T17:28:13,913 Created temporary directory: /tmp/pip-modern-metadata-_71nxoib 2023-09-22T17:28:13,916 Preparing metadata (pyproject.toml): started 2023-09-22T17:28:13,917 Running command Preparing metadata (pyproject.toml) 2023-09-22T17:28:15,194 running dist_info 2023-09-22T17:28:15,215 creating /tmp/pip-modern-metadata-_71nxoib/gencodegenes.egg-info 2023-09-22T17:28:15,220 writing /tmp/pip-modern-metadata-_71nxoib/gencodegenes.egg-info/PKG-INFO 2023-09-22T17:28:15,223 writing dependency_links to /tmp/pip-modern-metadata-_71nxoib/gencodegenes.egg-info/dependency_links.txt 2023-09-22T17:28:15,225 writing requirements to /tmp/pip-modern-metadata-_71nxoib/gencodegenes.egg-info/requires.txt 2023-09-22T17:28:15,226 writing top-level names to /tmp/pip-modern-metadata-_71nxoib/gencodegenes.egg-info/top_level.txt 2023-09-22T17:28:15,228 writing manifest file '/tmp/pip-modern-metadata-_71nxoib/gencodegenes.egg-info/SOURCES.txt' 2023-09-22T17:28:15,255 reading manifest file '/tmp/pip-modern-metadata-_71nxoib/gencodegenes.egg-info/SOURCES.txt' 2023-09-22T17:28:15,257 reading manifest template 'MANIFEST.in' 2023-09-22T17:28:15,263 adding license file 'LICENSE.txt' 2023-09-22T17:28:15,265 writing manifest file '/tmp/pip-modern-metadata-_71nxoib/gencodegenes.egg-info/SOURCES.txt' 2023-09-22T17:28:15,266 creating '/tmp/pip-modern-metadata-_71nxoib/gencodegenes-1.0.6.dist-info' 2023-09-22T17:28:15,467 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-22T17:28:15,472 Source in /tmp/pip-wheel-mxdtae5d/gencodegenes_01f95f8dc4cf4090a86f64a3583a7bbd has version 1.0.6, which satisfies requirement gencodegenes==1.0.6 from https://files.pythonhosted.org/packages/75/7c/3ac05a77f620695029c8ec5e755ad4663d5a2e79042e8e0e6cf853560c82/gencodegenes-1.0.6.tar.gz 2023-09-22T17:28:15,473 Removed gencodegenes==1.0.6 from https://files.pythonhosted.org/packages/75/7c/3ac05a77f620695029c8ec5e755ad4663d5a2e79042e8e0e6cf853560c82/gencodegenes-1.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-_6ztvgg_' 2023-09-22T17:28:15,477 Created temporary directory: /tmp/pip-unpack-ow7gycpy 2023-09-22T17:28:15,478 Created temporary directory: /tmp/pip-unpack-en197eiv 2023-09-22T17:28:15,483 Building wheels for collected packages: gencodegenes 2023-09-22T17:28:15,486 Created temporary directory: /tmp/pip-wheel-7klml3o7 2023-09-22T17:28:15,487 Destination directory: /tmp/pip-wheel-7klml3o7 2023-09-22T17:28:15,489 Building wheel for gencodegenes (pyproject.toml): started 2023-09-22T17:28:15,490 Running command Building wheel for gencodegenes (pyproject.toml) 2023-09-22T17:28:16,775 running bdist_wheel 2023-09-22T17:28:16,814 running build 2023-09-22T17:28:16,814 running build_py 2023-09-22T17:28:16,823 creating build 2023-09-22T17:28:16,823 creating build/lib.linux-armv7l-cpython-311 2023-09-22T17:28:16,825 creating build/lib.linux-armv7l-cpython-311/gencodegenes 2023-09-22T17:28:16,827 copying src/gencodegenes/__init__.py -> build/lib.linux-armv7l-cpython-311/gencodegenes 2023-09-22T17:28:16,830 running egg_info 2023-09-22T17:28:16,836 writing src/gencodegenes.egg-info/PKG-INFO 2023-09-22T17:28:16,839 writing dependency_links to src/gencodegenes.egg-info/dependency_links.txt 2023-09-22T17:28:16,840 writing requirements to src/gencodegenes.egg-info/requires.txt 2023-09-22T17:28:16,841 writing top-level names to src/gencodegenes.egg-info/top_level.txt 2023-09-22T17:28:16,850 reading manifest file 'src/gencodegenes.egg-info/SOURCES.txt' 2023-09-22T17:28:16,852 reading manifest template 'MANIFEST.in' 2023-09-22T17:28:16,858 adding license file 'LICENSE.txt' 2023-09-22T17:28:16,861 writing manifest file 'src/gencodegenes.egg-info/SOURCES.txt' 2023-09-22T17:28:16,864 copying src/gencodegenes/gencode.cpp -> build/lib.linux-armv7l-cpython-311/gencodegenes 2023-09-22T17:28:16,881 copying src/gencodegenes/gencode.pyx -> build/lib.linux-armv7l-cpython-311/gencodegenes 2023-09-22T17:28:16,884 copying src/gencodegenes/transcript.cpp -> build/lib.linux-armv7l-cpython-311/gencodegenes 2023-09-22T17:28:16,903 copying src/gencodegenes/transcript.pxd -> build/lib.linux-armv7l-cpython-311/gencodegenes 2023-09-22T17:28:16,904 copying src/gencodegenes/transcript.pyx -> build/lib.linux-armv7l-cpython-311/gencodegenes 2023-09-22T17:28:16,907 copying src/gencodegenes/tx.cpp -> build/lib.linux-armv7l-cpython-311/gencodegenes 2023-09-22T17:28:16,910 copying src/gencodegenes/tx.h -> build/lib.linux-armv7l-cpython-311/gencodegenes 2023-09-22T17:28:16,912 running build_ext 2023-09-22T17:28:16,918 building 'gencodegenes.transcript' extension 2023-09-22T17:28:16,919 creating build/temp.linux-armv7l-cpython-311 2023-09-22T17:28:16,919 creating build/temp.linux-armv7l-cpython-311/src 2023-09-22T17:28:16,920 creating build/temp.linux-armv7l-cpython-311/src/gencodegenes 2023-09-22T17:28:16,922 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/gencodegenes -Isrc/ -I/usr/include/python3.11 -c src/gencodegenes/transcript.cpp -o build/temp.linux-armv7l-cpython-311/src/gencodegenes/transcript.o -std=c++11 -I/usr/include 2023-09-22T17:28:49,636 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/gencodegenes -Isrc/ -I/usr/include/python3.11 -c src/tx.cpp -o build/temp.linux-armv7l-cpython-311/src/tx.o -std=c++11 -I/usr/include 2023-09-22T17:28:57,472 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/gencodegenes/transcript.o build/temp.linux-armv7l-cpython-311/src/tx.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/gencodegenes/transcript.cpython-311-arm-linux-gnueabihf.so 2023-09-22T17:28:57,860 building 'gencodegenes.gencode' extension 2023-09-22T17:28:57,860 creating build/temp.linux-armv7l-cpython-311/src/gzstream 2023-09-22T17:28:57,861 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/gencodegenes -Isrc/ -Isrc/zlib -I/usr/include/python3.11 -c src/gencode.cpp -o build/temp.linux-armv7l-cpython-311/src/gencode.o -std=c++11 -I/usr/include 2023-09-22T17:29:11,564 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/gencodegenes -Isrc/ -Isrc/zlib -I/usr/include/python3.11 -c src/gencodegenes/gencode.cpp -o build/temp.linux-armv7l-cpython-311/src/gencodegenes/gencode.o -std=c++11 -I/usr/include 2023-09-22T17:29:48,109 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/gencodegenes -Isrc/ -Isrc/zlib -I/usr/include/python3.11 -c src/gtf.cpp -o build/temp.linux-armv7l-cpython-311/src/gtf.o -std=c++11 -I/usr/include 2023-09-22T17:29:50,791 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/gencodegenes -Isrc/ -Isrc/zlib -I/usr/include/python3.11 -c src/gzstream/gzstream.C -o build/temp.linux-armv7l-cpython-311/src/gzstream/gzstream.o -std=c++11 -I/usr/include 2023-09-22T17:29:52,329 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/gencodegenes -Isrc/ -Isrc/zlib -I/usr/include/python3.11 -c src/tx.cpp -o build/temp.linux-armv7l-cpython-311/src/tx.o -std=c++11 -I/usr/include 2023-09-22T17:30:00,704 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/gencode.o build/temp.linux-armv7l-cpython-311/src/gencodegenes/gencode.o build/temp.linux-armv7l-cpython-311/src/gtf.o build/temp.linux-armv7l-cpython-311/src/gzstream/gzstream.o build/temp.linux-armv7l-cpython-311/src/tx.o -L/usr/lib/arm-linux-gnueabihf -lz -o build/lib.linux-armv7l-cpython-311/gencodegenes/gencode.cpython-311-arm-linux-gnueabihf.so 2023-09-22T17:30:01,332 installing to build/bdist.linux-armv7l/wheel 2023-09-22T17:30:01,357 running install 2023-09-22T17:30:01,358 running install_lib 2023-09-22T17:30:01,365 creating build/bdist.linux-armv7l 2023-09-22T17:30:01,365 creating build/bdist.linux-armv7l/wheel 2023-09-22T17:30:01,368 creating build/bdist.linux-armv7l/wheel/gencodegenes 2023-09-22T17:30:01,369 copying build/lib.linux-armv7l-cpython-311/gencodegenes/transcript.pxd -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-09-22T17:30:01,372 copying build/lib.linux-armv7l-cpython-311/gencodegenes/gencode.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-09-22T17:30:01,499 copying build/lib.linux-armv7l-cpython-311/gencodegenes/__init__.py -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-09-22T17:30:01,502 copying build/lib.linux-armv7l-cpython-311/gencodegenes/gencode.cpp -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-09-22T17:30:01,527 copying build/lib.linux-armv7l-cpython-311/gencodegenes/transcript.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-09-22T17:30:01,600 copying build/lib.linux-armv7l-cpython-311/gencodegenes/tx.h -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-09-22T17:30:01,603 copying build/lib.linux-armv7l-cpython-311/gencodegenes/gencode.pyx -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-09-22T17:30:01,607 copying build/lib.linux-armv7l-cpython-311/gencodegenes/tx.cpp -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-09-22T17:30:01,612 copying build/lib.linux-armv7l-cpython-311/gencodegenes/transcript.pyx -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-09-22T17:30:01,615 copying build/lib.linux-armv7l-cpython-311/gencodegenes/transcript.cpp -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-09-22T17:30:01,646 running install_egg_info 2023-09-22T17:30:01,659 Copying src/gencodegenes.egg-info to build/bdist.linux-armv7l/wheel/gencodegenes-1.0.6-py3.11.egg-info 2023-09-22T17:30:01,674 running install_scripts 2023-09-22T17:30:01,727 creating build/bdist.linux-armv7l/wheel/gencodegenes-1.0.6.dist-info/WHEEL 2023-09-22T17:30:01,731 creating '/tmp/pip-wheel-7klml3o7/.tmp-iw_gkyk0/gencodegenes-1.0.6-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-22T17:30:01,734 adding 'gencodegenes/__init__.py' 2023-09-22T17:30:01,810 adding 'gencodegenes/gencode.cpp' 2023-09-22T17:30:02,637 adding 'gencodegenes/gencode.cpython-311-arm-linux-gnueabihf.so' 2023-09-22T17:30:02,675 adding 'gencodegenes/gencode.pyx' 2023-09-22T17:30:02,746 adding 'gencodegenes/transcript.cpp' 2023-09-22T17:30:03,182 adding 'gencodegenes/transcript.cpython-311-arm-linux-gnueabihf.so' 2023-09-22T17:30:03,202 adding 'gencodegenes/transcript.pxd' 2023-09-22T17:30:03,205 adding 'gencodegenes/transcript.pyx' 2023-09-22T17:30:03,209 adding 'gencodegenes/tx.cpp' 2023-09-22T17:30:03,210 adding 'gencodegenes/tx.h' 2023-09-22T17:30:03,213 adding 'gencodegenes-1.0.6.dist-info/LICENSE.txt' 2023-09-22T17:30:03,214 adding 'gencodegenes-1.0.6.dist-info/METADATA' 2023-09-22T17:30:03,215 adding 'gencodegenes-1.0.6.dist-info/WHEEL' 2023-09-22T17:30:03,216 adding 'gencodegenes-1.0.6.dist-info/top_level.txt' 2023-09-22T17:30:03,217 adding 'gencodegenes-1.0.6.dist-info/RECORD' 2023-09-22T17:30:03,250 removing build/bdist.linux-armv7l/wheel 2023-09-22T17:30:03,393 Building wheel for gencodegenes (pyproject.toml): finished with status 'done' 2023-09-22T17:30:03,455 Created wheel for gencodegenes: filename=gencodegenes-1.0.6-cp311-cp311-linux_armv7l.whl size=2771798 sha256=da01b3c85fa77e22559eca00942db4434e6ecea2633dd9e855be6ae1d0c9d6e7 2023-09-22T17:30:03,456 Stored in directory: /tmp/pip-ephem-wheel-cache-ksx9qg0r/wheels/4d/c3/20/200a532559b5702fdbf11da73aea3b46c5c1011b8456bdf64d 2023-09-22T17:30:03,467 Successfully built gencodegenes 2023-09-22T17:30:03,537 Removed build tracker: '/tmp/pip-build-tracker-_6ztvgg_'