2023-09-23T01:17:11,953 Created temporary directory: /tmp/pip-build-tracker-s4lqch6i
2023-09-23T01:17:11,954 Initialized build tracking at /tmp/pip-build-tracker-s4lqch6i
2023-09-23T01:17:11,954 Created build tracker: /tmp/pip-build-tracker-s4lqch6i
2023-09-23T01:17:11,955 Entered build tracker: /tmp/pip-build-tracker-s4lqch6i
2023-09-23T01:17:11,955 Created temporary directory: /tmp/pip-wheel-a54tvc8b
2023-09-23T01:17:11,958 Created temporary directory: /tmp/pip-ephem-wheel-cache-yz7bcx07
2023-09-23T01:17:11,980 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-23T01:17:11,984 2 location(s) to search for versions of hydride:
2023-09-23T01:17:11,984 * https://pypi.org/simple/hydride/
2023-09-23T01:17:11,984 * https://www.piwheels.org/simple/hydride/
2023-09-23T01:17:11,985 Fetching project page and analyzing links: https://pypi.org/simple/hydride/
2023-09-23T01:17:11,985 Getting page https://pypi.org/simple/hydride/
2023-09-23T01:17:11,987 Found index url https://pypi.org/simple/
2023-09-23T01:17:12,235 Fetched page https://pypi.org/simple/hydride/ as application/vnd.pypi.simple.v1+json
2023-09-23T01:17:12,244   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/c1/ca/10e337628717f218cd81d4978284023a49507206b884407939c9ac8259be/hydride-0.1.0-py3-none-any.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7,<4.0)
2023-09-23T01:17:12,245   Found link https://files.pythonhosted.org/packages/1c/b4/d17a34568a8a3f21e6f237ea45dadb2a13a2a0f03465e4de752caf1b47aa/hydride-0.1.0.tar.gz (from https://pypi.org/simple/hydride/) (requires-python:>=3.7,<4.0), version: 0.1.0
2023-09-23T01:17:12,246   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/82/4b/f96e324dcf4705ec39bb8153fa954a8fc8658a38767c70e4f26cbc1c4981/hydride-1.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,247   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/7d/1c/0a440a3a51e68d876c31d4cdf6429cea8af9d0438bbff432f90973027dac/hydride-1.0.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,247   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/e9/ec/b654ae4347b4372e5a4c00c330b4d8304bcf7307f34d1d2ace0489ca0bab/hydride-1.0.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,248   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/e9/58/0ee938ed1abca37c48533d7af0a22aef36c7a2a64cfacdd27b64d4473640/hydride-1.0.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,248   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/09/47/7c84f8e6b282e2cb4959134620da86b8d1a63ca4a90fe10fed6f3606748e/hydride-1.0.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,249   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/6b/94/41346ab7c36be1821b5e4b27cca8047863feaca12f5f324dc09ecd2f0c2f/hydride-1.0.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,249   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/af/50/8fa7c180fbabc1406f5fd3e052f19c0b8f17fd4946b8e60275ffb3f288fa/hydride-1.0.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,250   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/37/af/35a3c5099559d3d84497bd52e0a45e8679b0bf7e25ebe8cc5cbfc2d8c312/hydride-1.0.0-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,250   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/bc/d2/2b55d85ca01ea592babee40f1fa2ee787a9f467670f996f8f7476c648549/hydride-1.0.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,251   Found link https://files.pythonhosted.org/packages/00/a4/7b8ca110619fb5c74c555b91223bdfe38c0551c944e6291f8ad3c7bd3ca4/hydride-1.0.0.tar.gz (from https://pypi.org/simple/hydride/) (requires-python:>=3.7), version: 1.0.0
2023-09-23T01:17:12,252   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/69/fc/910197f4448fc4c20cf65d66d9fc0c51463eaa0c06e9838fb9c7fbe60e64/hydride-1.1.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,253   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/fe/00/74759e1c2099cb462fb1cfc2b5a4b5131bee9fc172e097e80b6fcae489e8/hydride-1.1.0-cp310-cp310-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,253   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/41/4b/8a5e4f990ac3a3ff08218f1263dc1bc45dc21aea2d5ffa5f8943c7c4913f/hydride-1.1.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,254   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/a3/f5/17329c029a5d9a9bac612eb84bd1c32734ad52bbce292427369a4ed1a372/hydride-1.1.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,254   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/00/f8/7145de2d08c70588187ddada8a7f1c6bd696a9247973833086651ca6e7b7/hydride-1.1.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,254   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/79/d6/a851b2cec64641a62b94fdb5a02ed715171c098f061e36472f5df66f0c32/hydride-1.1.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,255   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/7e/01/b4ca501199235069110ae8f913122b434422d5ca5e9f72215b48ecf9cf68/hydride-1.1.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,255   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/ed/e5/849f9e8f6aa1dc7b3432388fdd5d2f21be64d4a813399b9862e2b6f5d041/hydride-1.1.0-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,256   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/3b/1e/e691328a2b40c1d6894146542020bc074d488f334c103e3091ae33fa49f2/hydride-1.1.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,257   Found link https://files.pythonhosted.org/packages/2d/1d/70b2507223bd0d8986068236beb1ad0178e405c51de8718499e4e671cb15/hydride-1.1.0.tar.gz (from https://pypi.org/simple/hydride/) (requires-python:>=3.7), version: 1.1.0
2023-09-23T01:17:12,257   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/de/b1/10fa73f14fc62eec90bbb95931a46acbcf8674580656cf34339358b7d431/hydride-1.1.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,258   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/08/08/877ad64acaf60950a41280b5d819d41b063a705042bff71dde4be6e5f82e/hydride-1.1.1-cp310-cp310-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,259   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/9f/14/96b1caf87f260ea00db658e83e6ae6d09e8bc096a2003b721e1384ffd11f/hydride-1.1.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,259   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/6f/b3/d7184f2ffdaf8ed63488163c663bc6f3d99120a01250ed6812e41cd4df7b/hydride-1.1.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,260   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/12/0d/fdd485a72d0301e40728ed1e8030562e517c5e69c3cf38828326eae5ed81/hydride-1.1.1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,260   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/89/11/daede9543ed710ebc5c163105c68c68355df12c8c2d1942bc8ea50e92e89/hydride-1.1.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,261   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/4a/a5/eb07e8887485bea6c290a27ccaf64ca72bf9da79664408247ec379585cc8/hydride-1.1.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,261   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/c1/6d/61aa50a96943b6503e4a7e323bc2b40bb0e5a6c2b98eb0b7f55eb419dce4/hydride-1.1.1-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,261   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/3b/2e/293d03ff36d5eae2699be25d899a61d7f0525bfcc1de4d2d2948477c2fbf/hydride-1.1.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,262   Found link https://files.pythonhosted.org/packages/6a/ed/a63ee98669907ef3316d4a39084b2274ebb52ea741fd26d408e1cd5adc08/hydride-1.1.1.tar.gz (from https://pypi.org/simple/hydride/) (requires-python:>=3.7), version: 1.1.1
2023-09-23T01:17:12,263   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/4d/d0/eeee127d8a47cd6842b3099e9365a292cd6a2ae8e4b4565a86fdc75becdb/hydride-1.1.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,263   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/65/db/b1cfba194c916ba99fd4a7bdf121098f153ad20dec27cf2c8a2b059f52f3/hydride-1.1.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,264   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/a5/a7/758a1d59672bf7c5c301bc89b911cb2f357ed106acbb8723600936ccaeb9/hydride-1.1.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,265   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/7e/7d/9c81f27b1183d661af993374bddfc4e14ed64f9be2eb93e808f4f0c7757b/hydride-1.1.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,265   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/7c/20/40ae9f6a99f434cd5c5db423f220fca2c8e9919fb455347107e7eea36190/hydride-1.1.2-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,266   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/cb/94/6f86716d642354efc1b5b51240d8a7aaf99069fd577357bf1121455ff253/hydride-1.1.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,266   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/42/ec/bc8674ec225e394f9d16a37dff943250ac76082139d8932322c06912f2df/hydride-1.1.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,267   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/7a/53/5f35976f533b8b42c5d2e85f99c7abe111973f7007d8192a0706717abcff/hydride-1.1.2-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,268   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/6f/cd/ad58bdaf7a8e57a44e9c247ade9eab88d631a24c567a9292674919a1d987/hydride-1.1.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,268   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/e3/54/ef7eacaa7c262f0fb8708b6bbb32e0f0596d03fff195baa3a7a0ac9e5f37/hydride-1.1.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,268   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/f0/f8/3cf99968ad47183c0a8f31bc3ecf4e261de35414b338698f90aeb1aaa205/hydride-1.1.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,269   Skipping link: No binaries permitted for hydride: https://files.pythonhosted.org/packages/60/06/de67650274107f2523eed6771f112dd6ac5c589f8f46ccddb60a7416ec59/hydride-1.1.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,270   Found link https://files.pythonhosted.org/packages/7d/6a/1629fd07665ab8bff04e6f9c9031d63a555792cbef6a74ba6ff477d3d6ba/hydride-1.1.2.tar.gz (from https://pypi.org/simple/hydride/) (requires-python:>=3.7), version: 1.1.2
2023-09-23T01:17:12,270 Fetching project page and analyzing links: https://www.piwheels.org/simple/hydride/
2023-09-23T01:17:12,271 Getting page https://www.piwheels.org/simple/hydride/
2023-09-23T01:17:12,272 Found index url https://www.piwheels.org/simple/
2023-09-23T01:17:12,436 Fetched page https://www.piwheels.org/simple/hydride/ as text/html
2023-09-23T01:17:12,439   Skipping link: No binaries permitted for hydride: https://www.piwheels.org/simple/hydride/hydride-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=1ce3f7726c994696bc76e32871af167117cbbcb7f490b9eb6613f9ece249b13a (from https://www.piwheels.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,439   Skipping link: No binaries permitted for hydride: https://www.piwheels.org/simple/hydride/hydride-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=1ce3f7726c994696bc76e32871af167117cbbcb7f490b9eb6613f9ece249b13a (from https://www.piwheels.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,440   Skipping link: No binaries permitted for hydride: https://www.piwheels.org/simple/hydride/hydride-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=40da0a39d4755dda084ca337ffdcf3f5444bbc4c5b64a5c2c8f266999a05aa4a (from https://www.piwheels.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,441   Skipping link: No binaries permitted for hydride: https://www.piwheels.org/simple/hydride/hydride-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=40da0a39d4755dda084ca337ffdcf3f5444bbc4c5b64a5c2c8f266999a05aa4a (from https://www.piwheels.org/simple/hydride/) (requires-python:>=3.7)
2023-09-23T01:17:12,441   Skipping link: No binaries permitted for hydride: https://www.piwheels.org/simple/hydride/hydride-0.1.0-py3-none-any.whl#sha256=a456732a6cf18307244549dabc3384559c6861beb4d3be3dbb2ec64b71d3be19 (from https://www.piwheels.org/simple/hydride/) (requires-python:>=3.7,<4.0)
2023-09-23T01:17:12,442 Skipping link: not a file: https://www.piwheels.org/simple/hydride/
2023-09-23T01:17:12,442 Skipping link: not a file: https://pypi.org/simple/hydride/
2023-09-23T01:17:12,461 Given no hashes to check 1 links for project 'hydride': discarding no candidates
2023-09-23T01:17:12,479 Collecting hydride==1.1.2
2023-09-23T01:17:12,481   Created temporary directory: /tmp/pip-unpack-vtk47lfy
2023-09-23T01:17:12,719   Downloading hydride-1.1.2.tar.gz (248 kB)
2023-09-23T01:17:12,907   Added hydride==1.1.2 from https://files.pythonhosted.org/packages/7d/6a/1629fd07665ab8bff04e6f9c9031d63a555792cbef6a74ba6ff477d3d6ba/hydride-1.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-s4lqch6i'
2023-09-23T01:17:12,917   Created temporary directory: /tmp/pip-build-env-8g1xma97
2023-09-23T01:17:12,921   Installing build dependencies: started
2023-09-23T01:17:12,922   Running command pip subprocess to install build dependencies
2023-09-23T01:17:14,091   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-09-23T01:17:14,586   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-23T01:17:16,298   Collecting setuptools>=0.30
2023-09-23T01:17:16,300     Obtaining dependency information for setuptools>=0.30 from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata
2023-09-23T01:17:16,305     Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB)
2023-09-23T01:17:16,520   Collecting wheel>=0.30
2023-09-23T01:17:16,535     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-09-23T01:17:16,964   Collecting biotite>=0.35
2023-09-23T01:17:16,982     Downloading https://www.piwheels.org/simple/biotite/biotite-0.36.1-cp311-cp311-linux_armv7l.whl (45.3 MB)
2023-09-23T01:17:20,688        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.3/45.3 MB 6.0 MB/s eta 0:00:00
2023-09-23T01:17:21,376   WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/oldest-supported-numpy/
2023-09-23T01:17:21,591   Collecting oldest-supported-numpy
2023-09-23T01:17:21,606     Using cached https://www.piwheels.org/simple/oldest-supported-numpy/oldest_supported_numpy-2023.8.3-py3-none-any.whl (4.8 kB)
2023-09-23T01:17:22,023   Collecting msgpack>=0.5.6
2023-09-23T01:17:22,036     Downloading https://www.piwheels.org/simple/msgpack/msgpack-1.0.5-cp311-cp311-linux_armv7l.whl (286 kB)
2023-09-23T01:17:22,083        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 286.4/286.4 kB 7.2 MB/s eta 0:00:00
2023-09-23T01:17:23,498   Collecting cython>=0.29
2023-09-23T01:17:23,499     Obtaining dependency information for cython>=0.29 from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata
2023-09-23T01:17:23,504     Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB)
2023-09-23T01:17:23,983   Collecting requests>=2.12 (from biotite>=0.35)
2023-09-23T01:17:23,998     Using cached https://www.piwheels.org/simple/requests/requests-2.31.0-py3-none-any.whl (62 kB)
2023-09-23T01:17:24,732     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-23T01:17:24,740     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-23T01:17:24,747     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-23T01:17:24,754     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-23T01:17:24,762     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-23T01:17:25,156   Collecting numpy>=1.14.5 (from biotite>=0.35)
2023-09-23T01:17:26,072     Using cached https://www.piwheels.org/simple/numpy/numpy-1.25.2-cp311-cp311-linux_armv7l.whl (12.5 MB)
2023-09-23T01:17:26,690   Collecting networkx>=2.0 (from biotite>=0.35)
2023-09-23T01:17:26,850     Using cached https://www.piwheels.org/simple/networkx/networkx-3.1-py3-none-any.whl (2.1 MB)
2023-09-23T01:17:27,093   Collecting numpy>=1.14.5 (from biotite>=0.35)
2023-09-23T01:17:27,998     Using cached https://www.piwheels.org/simple/numpy/numpy-1.23.2-cp311-cp311-linux_armv7l.whl (12.4 MB)
2023-09-23T01:17:28,832   Collecting charset-normalizer<4,>=2 (from requests>=2.12->biotite>=0.35)
2023-09-23T01:17:28,848     Using cached https://www.piwheels.org/simple/charset-normalizer/charset_normalizer-3.2.0-py3-none-any.whl (46 kB)
2023-09-23T01:17:28,951   Collecting idna<4,>=2.5 (from requests>=2.12->biotite>=0.35)
2023-09-23T01:17:28,966     Using cached https://www.piwheels.org/simple/idna/idna-3.4-py3-none-any.whl (61 kB)
2023-09-23T01:17:29,243   Collecting urllib3<3,>=1.21.1 (from requests>=2.12->biotite>=0.35)
2023-09-23T01:17:29,244     Obtaining dependency information for urllib3<3,>=1.21.1 from https://files.pythonhosted.org/packages/37/dc/399e63f5d1d96bb643404ee830657f4dfcf8503f5ba8fa3c6d465d0c57fe/urllib3-2.0.5-py3-none-any.whl.metadata
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2023-09-23T01:17:29,402   Collecting certifi>=2017.4.17 (from requests>=2.12->biotite>=0.35)
2023-09-23T01:17:29,424     Using cached https://www.piwheels.org/simple/certifi/certifi-2023.7.22-py3-none-any.whl (158 kB)
2023-09-23T01:17:29,520   Using cached setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-09-23T01:17:29,562   Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB)
2023-09-23T01:17:29,594   Using cached urllib3-2.0.5-py3-none-any.whl (123 kB)
2023-09-23T01:17:32,374   Installing collected packages: msgpack, wheel, urllib3, setuptools, numpy, networkx, idna, cython, charset-normalizer, certifi, requests, oldest-supported-numpy, biotite
2023-09-23T01:17:32,684     Creating /tmp/pip-build-env-8g1xma97/overlay/local/bin
2023-09-23T01:17:32,686     changing mode of /tmp/pip-build-env-8g1xma97/overlay/local/bin/wheel to 755
2023-09-23T01:17:43,709     changing mode of /tmp/pip-build-env-8g1xma97/overlay/local/bin/f2py to 755
2023-09-23T01:17:43,711     changing mode of /tmp/pip-build-env-8g1xma97/overlay/local/bin/f2py3 to 755
2023-09-23T01:17:43,713     changing mode of /tmp/pip-build-env-8g1xma97/overlay/local/bin/f2py3.11 to 755
2023-09-23T01:17:52,407     changing mode of /tmp/pip-build-env-8g1xma97/overlay/local/bin/cygdb to 755
2023-09-23T01:17:52,409     changing mode of /tmp/pip-build-env-8g1xma97/overlay/local/bin/cython to 755
2023-09-23T01:17:52,411     changing mode of /tmp/pip-build-env-8g1xma97/overlay/local/bin/cythonize to 755
2023-09-23T01:17:52,554     changing mode of /tmp/pip-build-env-8g1xma97/overlay/local/bin/normalizer to 755
2023-09-23T01:17:58,432   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2023-09-23T01:17:58,432   conan 2.0.10 requires urllib3<1.27,>=1.26.6, but you have urllib3 2.0.5 which is incompatible.
2023-09-23T01:17:58,434   Successfully installed biotite-0.36.1 certifi-2023.7.22 charset-normalizer-3.2.0 cython-3.0.2 idna-3.4 msgpack-1.0.5 networkx-3.1 numpy-1.23.2 oldest-supported-numpy-2023.8.3 requests-2.31.0 setuptools-68.2.2 urllib3-2.0.5 wheel-0.41.2
2023-09-23T01:17:59,467   Installing build dependencies: finished with status 'done'
2023-09-23T01:17:59,491   Getting requirements to build wheel: started
2023-09-23T01:17:59,493   Running command Getting requirements to build wheel
2023-09-23T01:18:01,764   running egg_info
2023-09-23T01:18:01,770   writing src/hydride.egg-info/PKG-INFO
2023-09-23T01:18:01,774   writing dependency_links to src/hydride.egg-info/dependency_links.txt
2023-09-23T01:18:01,776   writing entry points to src/hydride.egg-info/entry_points.txt
2023-09-23T01:18:01,777   writing requirements to src/hydride.egg-info/requires.txt
2023-09-23T01:18:01,779   writing top-level names to src/hydride.egg-info/top_level.txt
2023-09-23T01:18:01,808   reading manifest file 'src/hydride.egg-info/SOURCES.txt'
2023-09-23T01:18:01,811   reading manifest template 'MANIFEST.in'
2023-09-23T01:18:01,812   adding license file 'LICENSE.rst'
2023-09-23T01:18:01,814   writing manifest file 'src/hydride.egg-info/SOURCES.txt'
2023-09-23T01:18:02,052   Getting requirements to build wheel: finished with status 'done'
2023-09-23T01:18:02,071   Created temporary directory: /tmp/pip-modern-metadata-ngu4hh84
2023-09-23T01:18:02,073   Preparing metadata (pyproject.toml): started
2023-09-23T01:18:02,074   Running command Preparing metadata (pyproject.toml)
2023-09-23T01:18:04,221   running dist_info
2023-09-23T01:18:04,228   creating /tmp/pip-modern-metadata-ngu4hh84/hydride.egg-info
2023-09-23T01:18:04,235   writing /tmp/pip-modern-metadata-ngu4hh84/hydride.egg-info/PKG-INFO
2023-09-23T01:18:04,240   writing dependency_links to /tmp/pip-modern-metadata-ngu4hh84/hydride.egg-info/dependency_links.txt
2023-09-23T01:18:04,241   writing entry points to /tmp/pip-modern-metadata-ngu4hh84/hydride.egg-info/entry_points.txt
2023-09-23T01:18:04,243   writing requirements to /tmp/pip-modern-metadata-ngu4hh84/hydride.egg-info/requires.txt
2023-09-23T01:18:04,244   writing top-level names to /tmp/pip-modern-metadata-ngu4hh84/hydride.egg-info/top_level.txt
2023-09-23T01:18:04,245   writing manifest file '/tmp/pip-modern-metadata-ngu4hh84/hydride.egg-info/SOURCES.txt'
2023-09-23T01:18:04,272   reading manifest file '/tmp/pip-modern-metadata-ngu4hh84/hydride.egg-info/SOURCES.txt'
2023-09-23T01:18:04,275   reading manifest template 'MANIFEST.in'
2023-09-23T01:18:04,276   adding license file 'LICENSE.rst'
2023-09-23T01:18:04,278   writing manifest file '/tmp/pip-modern-metadata-ngu4hh84/hydride.egg-info/SOURCES.txt'
2023-09-23T01:18:04,279   creating '/tmp/pip-modern-metadata-ngu4hh84/hydride-1.1.2.dist-info'
2023-09-23T01:18:04,554   Preparing metadata (pyproject.toml): finished with status 'done'
2023-09-23T01:18:04,559   Source in /tmp/pip-wheel-a54tvc8b/hydride_94b347cf2d364ccd9da5c90c38189826 has version 1.1.2, which satisfies requirement hydride==1.1.2 from https://files.pythonhosted.org/packages/7d/6a/1629fd07665ab8bff04e6f9c9031d63a555792cbef6a74ba6ff477d3d6ba/hydride-1.1.2.tar.gz
2023-09-23T01:18:04,560   Removed hydride==1.1.2 from https://files.pythonhosted.org/packages/7d/6a/1629fd07665ab8bff04e6f9c9031d63a555792cbef6a74ba6ff477d3d6ba/hydride-1.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-s4lqch6i'
2023-09-23T01:18:04,567 Created temporary directory: /tmp/pip-unpack-ihpnjy2t
2023-09-23T01:18:04,568 Created temporary directory: /tmp/pip-unpack-8wzr4db3
2023-09-23T01:18:04,577 Building wheels for collected packages: hydride
2023-09-23T01:18:04,582   Created temporary directory: /tmp/pip-wheel-z66hp6v5
2023-09-23T01:18:04,582   Destination directory: /tmp/pip-wheel-z66hp6v5
2023-09-23T01:18:04,584   Building wheel for hydride (pyproject.toml): started
2023-09-23T01:18:04,586   Running command Building wheel for hydride (pyproject.toml)
2023-09-23T01:18:06,633   running bdist_wheel
2023-09-23T01:18:06,662   running build
2023-09-23T01:18:06,662   running build_py
2023-09-23T01:18:06,669   creating build
2023-09-23T01:18:06,670   creating build/lib.linux-armv7l-cpython-311
2023-09-23T01:18:06,670   creating build/lib.linux-armv7l-cpython-311/hydride
2023-09-23T01:18:06,671   copying src/hydride/names.py -> build/lib.linux-armv7l-cpython-311/hydride
2023-09-23T01:18:06,674   copying src/hydride/charge.py -> build/lib.linux-armv7l-cpython-311/hydride
2023-09-23T01:18:06,676   copying src/hydride/cli.py -> build/lib.linux-armv7l-cpython-311/hydride
2023-09-23T01:18:06,678   copying src/hydride/fragments.py -> build/lib.linux-armv7l-cpython-311/hydride
2023-09-23T01:18:06,680   copying src/hydride/add.py -> build/lib.linux-armv7l-cpython-311/hydride
2023-09-23T01:18:06,682   copying src/hydride/__init__.py -> build/lib.linux-armv7l-cpython-311/hydride
2023-09-23T01:18:06,683   running egg_info
2023-09-23T01:18:06,690   writing src/hydride.egg-info/PKG-INFO
2023-09-23T01:18:06,693   writing dependency_links to src/hydride.egg-info/dependency_links.txt
2023-09-23T01:18:06,695   writing entry points to src/hydride.egg-info/entry_points.txt
2023-09-23T01:18:06,696   writing requirements to src/hydride.egg-info/requires.txt
2023-09-23T01:18:06,697   writing top-level names to src/hydride.egg-info/top_level.txt
2023-09-23T01:18:06,708   reading manifest file 'src/hydride.egg-info/SOURCES.txt'
2023-09-23T01:18:06,710   reading manifest template 'MANIFEST.in'
2023-09-23T01:18:06,711   adding license file 'LICENSE.rst'
2023-09-23T01:18:06,713   writing manifest file 'src/hydride.egg-info/SOURCES.txt'
2023-09-23T01:18:06,716   copying src/hydride/fragments.pickle -> build/lib.linux-armv7l-cpython-311/hydride
2023-09-23T01:18:06,722   copying src/hydride/names.pickle -> build/lib.linux-armv7l-cpython-311/hydride
2023-09-23T01:18:06,725   copying src/hydride/relax.c -> build/lib.linux-armv7l-cpython-311/hydride
2023-09-23T01:18:06,750   running build_ext
2023-09-23T01:18:06,756   building 'hydride.relax' extension
2023-09-23T01:18:06,756   creating build/temp.linux-armv7l-cpython-311
2023-09-23T01:18:06,757   creating build/temp.linux-armv7l-cpython-311/src
2023-09-23T01:18:06,757   creating build/temp.linux-armv7l-cpython-311/src/hydride
2023-09-23T01:18:06,758   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8g1xma97/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/hydride/relax.c -o build/temp.linux-armv7l-cpython-311/src/hydride/relax.o
2023-09-23T01:18:07,151   In file included from /tmp/pip-build-env-8g1xma97/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2023-09-23T01:18:07,152                    from /tmp/pip-build-env-8g1xma97/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-23T01:18:07,152                    from /tmp/pip-build-env-8g1xma97/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-23T01:18:07,153                    from src/hydride/relax.c:760:
2023-09-23T01:18:07,154   /tmp/pip-build-env-8g1xma97/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-23T01:18:07,154      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-23T01:18:07,155         |  ^~~~~~~
2023-09-23T01:18:47,105   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/hydride/relax.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/hydride/relax.cpython-311-arm-linux-gnueabihf.so
2023-09-23T01:18:47,291   installing to build/bdist.linux-armv7l/wheel
2023-09-23T01:18:47,291   running install
2023-09-23T01:18:47,315   running install_lib
2023-09-23T01:18:47,322   creating build/bdist.linux-armv7l
2023-09-23T01:18:47,322   creating build/bdist.linux-armv7l/wheel
2023-09-23T01:18:47,324   creating build/bdist.linux-armv7l/wheel/hydride
2023-09-23T01:18:47,325   copying build/lib.linux-armv7l-cpython-311/hydride/names.py -> build/bdist.linux-armv7l/wheel/hydride
2023-09-23T01:18:47,328   copying build/lib.linux-armv7l-cpython-311/hydride/charge.py -> build/bdist.linux-armv7l/wheel/hydride
2023-09-23T01:18:47,329   copying build/lib.linux-armv7l-cpython-311/hydride/relax.c -> build/bdist.linux-armv7l/wheel/hydride
2023-09-23T01:18:47,354   copying build/lib.linux-armv7l-cpython-311/hydride/cli.py -> build/bdist.linux-armv7l/wheel/hydride
2023-09-23T01:18:47,357   copying build/lib.linux-armv7l-cpython-311/hydride/relax.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/hydride
2023-09-23T01:18:47,394   copying build/lib.linux-armv7l-cpython-311/hydride/fragments.py -> build/bdist.linux-armv7l/wheel/hydride
2023-09-23T01:18:47,396   copying build/lib.linux-armv7l-cpython-311/hydride/add.py -> build/bdist.linux-armv7l/wheel/hydride
2023-09-23T01:18:47,399   copying build/lib.linux-armv7l-cpython-311/hydride/names.pickle -> build/bdist.linux-armv7l/wheel/hydride
2023-09-23T01:18:47,402   copying build/lib.linux-armv7l-cpython-311/hydride/fragments.pickle -> build/bdist.linux-armv7l/wheel/hydride
2023-09-23T01:18:47,408   copying build/lib.linux-armv7l-cpython-311/hydride/__init__.py -> build/bdist.linux-armv7l/wheel/hydride
2023-09-23T01:18:47,409   running install_egg_info
2023-09-23T01:18:47,415   Copying src/hydride.egg-info to build/bdist.linux-armv7l/wheel/hydride-1.1.2-py3.11.egg-info
2023-09-23T01:18:47,429   running install_scripts
2023-09-23T01:18:47,479   creating build/bdist.linux-armv7l/wheel/hydride-1.1.2.dist-info/WHEEL
2023-09-23T01:18:47,481   creating '/tmp/pip-wheel-z66hp6v5/.tmp-qzgwku8z/hydride-1.1.2-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-23T01:18:47,483   adding 'hydride/__init__.py'
2023-09-23T01:18:47,485   adding 'hydride/add.py'
2023-09-23T01:18:47,487   adding 'hydride/charge.py'
2023-09-23T01:18:47,489   adding 'hydride/cli.py'
2023-09-23T01:18:47,502   adding 'hydride/fragments.pickle'
2023-09-23T01:18:47,506   adding 'hydride/fragments.py'
2023-09-23T01:18:47,509   adding 'hydride/names.pickle'
2023-09-23T01:18:47,511   adding 'hydride/names.py'
2023-09-23T01:18:47,627   adding 'hydride/relax.c'
2023-09-23T01:18:48,018   adding 'hydride/relax.cpython-311-arm-linux-gnueabihf.so'
2023-09-23T01:18:48,034   adding 'hydride-1.1.2.dist-info/LICENSE.rst'
2023-09-23T01:18:48,035   adding 'hydride-1.1.2.dist-info/METADATA'
2023-09-23T01:18:48,036   adding 'hydride-1.1.2.dist-info/WHEEL'
2023-09-23T01:18:48,037   adding 'hydride-1.1.2.dist-info/entry_points.txt'
2023-09-23T01:18:48,038   adding 'hydride-1.1.2.dist-info/top_level.txt'
2023-09-23T01:18:48,038   adding 'hydride-1.1.2.dist-info/RECORD'
2023-09-23T01:18:48,060   removing build/bdist.linux-armv7l/wheel
2023-09-23T01:18:48,309   Building wheel for hydride (pyproject.toml): finished with status 'done'
2023-09-23T01:18:48,335   Created wheel for hydride: filename=hydride-1.1.2-cp311-cp311-linux_armv7l.whl size=943652 sha256=40130352b80213b2d4e90753b3ee4eac12ac361975491d2f92246a84677d17b5
2023-09-23T01:18:48,336   Stored in directory: /tmp/pip-ephem-wheel-cache-yz7bcx07/wheels/2c/0c/83/bc5603dc5d5eb5aa66b0f70da521da1d3098a7153b7a03f1ed
2023-09-23T01:18:48,347 Successfully built hydride
2023-09-23T01:18:48,382 Removed build tracker: '/tmp/pip-build-tracker-s4lqch6i'