2023-09-23T11:18:20,113 Created temporary directory: /tmp/pip-build-tracker-3klu_h5m 2023-09-23T11:18:20,114 Initialized build tracking at /tmp/pip-build-tracker-3klu_h5m 2023-09-23T11:18:20,114 Created build tracker: /tmp/pip-build-tracker-3klu_h5m 2023-09-23T11:18:20,115 Entered build tracker: /tmp/pip-build-tracker-3klu_h5m 2023-09-23T11:18:20,115 Created temporary directory: /tmp/pip-wheel-adhyfo3x 2023-09-23T11:18:20,118 Created temporary directory: /tmp/pip-ephem-wheel-cache-w1imr9ub 2023-09-23T11:18:20,143 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-23T11:18:20,147 2 location(s) to search for versions of pysam: 2023-09-23T11:18:20,147 * https://pypi.org/simple/pysam/ 2023-09-23T11:18:20,147 * https://www.piwheels.org/simple/pysam/ 2023-09-23T11:18:20,147 Fetching project page and analyzing links: https://pypi.org/simple/pysam/ 2023-09-23T11:18:20,148 Getting page https://pypi.org/simple/pysam/ 2023-09-23T11:18:20,150 Found index url https://pypi.org/simple/ 2023-09-23T11:18:20,387 Fetched page https://pypi.org/simple/pysam/ as application/vnd.pypi.simple.v1+json 2023-09-23T11:18:20,428 Found link https://files.pythonhosted.org/packages/7f/ce/e9405fcf72096f78dc7d75e8ce2a1cd907e1b4a9af0dbf1fc4dac5770f81/pysam-0.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.4 2023-09-23T11:18:20,429 Found link https://files.pythonhosted.org/packages/df/58/508dc40f603551d34b815560d52d9532dd243f1a8c35d9317ebff15d27e7/pysam-0.4.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.4.1 2023-09-23T11:18:20,430 Found link https://files.pythonhosted.org/packages/64/7b/09ff2b61c7600a5aefd7ee0c37cec60140d31f8194d237e1d63c4d457931/pysam-0.7.6.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.6 2023-09-23T11:18:20,431 Found link https://files.pythonhosted.org/packages/46/b5/877f40fbb84f588b69b4afcb1409b8bdeed7ef980113d3e8ef69bab26e09/pysam-0.7.7.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.7 2023-09-23T11:18:20,431 Found link https://files.pythonhosted.org/packages/b5/0f/436d15f08096dd9869a956e502fd119c15efbd84896aa53df50c7c6c0e13/pysam-0.7.8.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.8 2023-09-23T11:18:20,432 Found link https://files.pythonhosted.org/packages/a4/ea/901d47d5621f15c05079dcf45e746a77bab21dbf0f9ce272993a3ca3a367/pysam-0.8.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.0 2023-09-23T11:18:20,432 Found link https://files.pythonhosted.org/packages/0e/4a/d1625792b2fd3a172d4bad096ab1559bcb7a81fa5fa6f9bc3937de23340d/pysam-0.8.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.1 2023-09-23T11:18:20,433 Found link https://files.pythonhosted.org/packages/10/42/7f51e1ad0c283e1d6bf826d3a193fa0644e675c9c6d42263b69fefc3b527/pysam-0.8.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.2 2023-09-23T11:18:20,434 Found link https://files.pythonhosted.org/packages/07/6b/3f48a2f05fbde46f2c52fc5f9adc15d928951cd54035109d553e14b774c7/pysam-0.8.2.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.2.1 2023-09-23T11:18:20,435 Found link https://files.pythonhosted.org/packages/f9/b9/8cfad46376335001f0cbbc46bf402fa107b0e8af8fe9e4192702b251f628/pysam-0.8.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.3 2023-09-23T11:18:20,435 Found link https://files.pythonhosted.org/packages/27/89/bf8c44d0bfe9d0cadab062893806994c168c9f490f67370fc56d6e8ba224/pysam-0.8.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.4 2023-09-23T11:18:20,436 Found link https://files.pythonhosted.org/packages/0f/37/fa514cb2163997551e95f63ec12f7bec7b640a601456f1d0ab3ab900c05f/pysam-0.9.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.0 2023-09-23T11:18:20,437 Found link https://files.pythonhosted.org/packages/40/15/20b22dc3d017ec123e533d062b982b111b0214168905de3221b5caf5f766/pysam-0.9.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1 2023-09-23T11:18:20,437 Found link https://files.pythonhosted.org/packages/f7/ae/59341d9fd2bed1cc32225115fc3f866a0e4e020f31073d698785c956360f/pysam-0.9.1.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.1 2023-09-23T11:18:20,438 Found link https://files.pythonhosted.org/packages/76/62/908776209238850eca22e7139cc23ce2ba14b2941ceb438b1572f84e8d82/pysam-0.9.1.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.2 2023-09-23T11:18:20,439 Found link https://files.pythonhosted.org/packages/e7/e9/db49c8bd39673c1f48200f69ccc34784016d664136f36e03a090411a95fc/pysam-0.9.1.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.3 2023-09-23T11:18:20,439 Found link https://files.pythonhosted.org/packages/de/03/02934438b204565bc5231f38a11da840a3c3e4b2beac8c8770d675770668/pysam-0.9.1.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.4 2023-09-23T11:18:20,440 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/5a/0b25d6d734e1797c7ce06442ff6714af53cb1c8cd6c6cfd1a32df4587e33/pysam-0.10.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,440 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/72/d2/d106b2fc317e838f7eea7140c8d0ad4df4fde6a456a526649a58397f638c/pysam-0.10.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,441 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0c/55/d775726477bfe55e06c88701c8cf9a4b2596a877b09e562551c00cf4a931/pysam-0.10.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,442 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/ea/01735cceef15296bad16873979ae6848efebbbc9ab20eba244d532846dbf/pysam-0.10.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,442 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8a/09/526378006226fb39eb54d9935c407c9b3c0302792c89e50d6b4f14d6f4b8/pysam-0.10.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,443 Found link https://files.pythonhosted.org/packages/87/8e/d2d8238558970df37c7aa01ddec63057a98042334e939b4c1c69cb9a2504/pysam-0.10.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.10.0 2023-09-23T11:18:20,443 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/93/f5/bfca0394bb90cc5993b7595d7c6aeebfc43dce8bf97394df4bfba9141caf/pysam-0.11-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,444 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4b/ff/7e0c6169883a26cee912ce25ef98893c13966cce1064fd6136b53e28d365/pysam-0.11-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,444 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/39/ba/91614d3e18818011decdb5cda8991cea11330d274399492822fb50b7478e/pysam-0.11-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,445 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3e/6f/2b166df4d7d55e2f69551b85ec2bba01048e5dc2307163ab8ad7d694bde1/pysam-0.11-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,445 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0b/28/cd6fde9c19444f779130e27195b4c1d9d896266e4e0b0bc8d515c031854f/pysam-0.11-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,446 Found link https://files.pythonhosted.org/packages/f4/bb/c5fcaace8857bdf8a430de41b5298c602fdce4917494f7a941c038e5861a/pysam-0.11.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11 2023-09-23T11:18:20,447 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/81/01/2304e5367c566f538cf64bad1bd41ec41e47d8aeefd197a209c8c1cf14fa/pysam-0.11.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,447 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ef/b3/b7ea200fc6e16af0cd2397659a2a2dd383f4ea71d2e0948f7215e73fb6a6/pysam-0.11.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,448 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/00/0d55946c0b1c781caee096ef9c4e9e54047ecf897874bf791c5ea8351df3/pysam-0.11.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,448 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/45/2a/b5e9e88b0d5097fa45f0832a05acfb39879679a087e55145198d47bb6099/pysam-0.11.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,449 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6e/0e/967ed910f8ce74ed5ea6b7a4775a86d05205963bf927a8452604ad277913/pysam-0.11.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,449 Found link https://files.pythonhosted.org/packages/be/70/16cdd6c5ef799b2db2af4fd5f9720df0f3206b0a06ed40e03692aa80ae25/pysam-0.11.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.1 2023-09-23T11:18:20,450 Found link https://files.pythonhosted.org/packages/89/d9/52995323a3a15e14f2cd579a49f953c804b36a1a7d7dc09a08b7de3591d2/pysam-0.11.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2 2023-09-23T11:18:20,450 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8f/23/12b4829036ce49ec068c61a28057029dd19a6a1a29855dff0efb785e0d12/pysam-0.11.2.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,451 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0a/d8/daa0986a5049b66b4ab2fc8093a17a961cedc75d1a39e1a4821d19f4f13f/pysam-0.11.2.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,451 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/34/5f/254cec485fedd72269c061262eb2bc36f8a438a5badb78c8582e46905623/pysam-0.11.2.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,452 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c3/cc/47ae71c341bd822dfeec2148f6521c1bba690e4581814114519b3cc611d4/pysam-0.11.2.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,453 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c7/b0/4acf13c3b125db232e8ed93fec3e5b3a90abe47fd27aaacc15c9e03caf6f/pysam-0.11.2.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,453 Found link https://files.pythonhosted.org/packages/4b/d2/152284e08c551471c7a7b9b23b4d0916637705ee4f979314ca1750b37c83/pysam-0.11.2.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2.1 2023-09-23T11:18:20,454 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/24/dd/2a9226b90d8c98482209617c2376434e1c19da4981de49c78af0e763988f/pysam-0.11.2.2-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,454 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/9d/d30859cf5a7555719e9b28d34f61bbd4ef0e811fb8a857a986ee9913b79a/pysam-0.11.2.2-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,455 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d8/34/b0a7ece94bf7af7d482282ccd8430fe291147960d900b514b7aa606c9170/pysam-0.11.2.2-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,455 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9d/a0/2bc18552108cf9605e0ffa7c31673bc56653c0cd7521730a2d5eeb06939f/pysam-0.11.2.2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,456 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/c0/18436ad1db0ed38c997b7fda42db8b6489c50abcb321320015de12bdd164/pysam-0.11.2.2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,457 Found link https://files.pythonhosted.org/packages/a4/1b/b6dfd92aea876647d20d9a8bd8618e4f2af6300539426be83c8bb0912d6f/pysam-0.11.2.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2.2 2023-09-23T11:18:20,457 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/be/3c/9c0d31f4baa506057e781641325f52f709ca4fe777065e39be08e690752b/pysam-0.12-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,458 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/5e/f1/28f7e3df4941ac01c2c1794b1009000fad81cf026da6c04e223e5e86e6ad/pysam-0.12-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,458 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e7/a7/9225250a464b91caba6c88e82b59755e07a30aa803085febbb923655d2d5/pysam-0.12-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,459 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c6/ce/08728c6f395b46cdb75b79d4c554184b624fbe344a6a99b62b1a7f58a5df/pysam-0.12-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,459 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ef/bd/a741af36309bfbd8d40e5c5c9fc9f2ca3c7a86c2d1ff7c2563a81d851a44/pysam-0.12-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,460 Found link https://files.pythonhosted.org/packages/0f/e0/19046ae89307ddeadfa8dabc305a9cfce67865de06b762057edd84bc0fd6/pysam-0.12.tar.gz (from https://pypi.org/simple/pysam/), version: 0.12 2023-09-23T11:18:20,460 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/15/bc/9d27138acddecbeca3a010691e71e89ad02e5c6dc3a38ca9d8cc94c92295/pysam-0.12.0.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,461 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/d9/7a508464feb23b750ba0d56e10e014f0d1a8cd6a4e8fe3887c75affa5fa9/pysam-0.12.0.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,461 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/d5/4b67f2767fc352d8246c3eed4ce0f5d61fdbf6cef6e5b57d433ed63f7ed8/pysam-0.12.0.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,462 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0e/d9/91db21a596a3a896365a90c5b44c6722b4e0acfd5e90c52071175e77aad4/pysam-0.12.0.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,463 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/50/28/f3a3989a9a34fa6c84fdba3d80b4b1624b2c253d7906a13638152b20555b/pysam-0.12.0.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,463 Found link https://files.pythonhosted.org/packages/b9/98/d98b250f98a6b91df71a03083219bec786cdda5408f77997f8ad81d06058/pysam-0.12.0.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.12.0.1 2023-09-23T11:18:20,464 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/14/cd/676a08a4bd77fd21716add76f946235780a5673c75c7408b2449db2dde5a/pysam-0.13-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,465 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/59/7e/55048651e80ca7ebbed41489ec53da863a500d536fbff5884175e81b40c1/pysam-0.13-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,465 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fc/63/4a758298dafa37a719540fd55c4e76de15e3ad6be0201c9e0e6ed59b3d8c/pysam-0.13-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,466 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8b/08/8f6ea307458945f9e5db70e460b7902f210f08646af35800372907095f06/pysam-0.13-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,466 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/dd/5f41722f95749537e2f5a84414a4b08fc4e14d39552df8171e375129edf5/pysam-0.13-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,467 Found link https://files.pythonhosted.org/packages/31/17/31d317006a74941d2caddac97c5106601fe4da467653d0f061702e9ead95/pysam-0.13.tar.gz (from https://pypi.org/simple/pysam/), version: 0.13 2023-09-23T11:18:20,467 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c9/0b/ca7620a778a1ac5a6669b750ab82cd8e2ca29f671cf2ab929cf907338bf5/pysam-0.14-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,468 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/ff/a7cdcde7f79ca59cd6a6921f55f0cce8fb3d4ff273257e313efc3e52853a/pysam-0.14-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,468 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/51/c1/474c632acbbd7c06921a4ad31b237c3f41fe662101ec775be6a9c3c8cf20/pysam-0.14-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,469 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f7/53/6e677a66b02755d9d631a7ffa37b23b8eca7b2463faf14dcf3bcbbcbec24/pysam-0.14-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,469 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/96/7b/845e49997825cf2aaef3719853e8d2d07b43d3a5e096cb9863208b7d0af8/pysam-0.14-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,470 Found link https://files.pythonhosted.org/packages/d8/78/8b3fad13d3bd8787c0d922056061727c2a0cf91c45a836c98342594dd293/pysam-0.14.tar.gz (from https://pypi.org/simple/pysam/), version: 0.14 2023-09-23T11:18:20,471 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/cd/9b/2627df910452b49bef57dd5ce720832d49faadea3e3d86f940f168b807b4/pysam-0.14.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,471 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/96/a9b21863c30c00bde76ab9bd3b538ed9f4d872f6767217c930cd0246fd21/pysam-0.14.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,472 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a0/ba/95ee9ea7921ae153c51880ffe047269a7ccf396442214f4fc965cc66ea68/pysam-0.14.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,473 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/09/a9/d74aa164efb28ce328cd4890b0182ccdf2e781c192910072717c965765c6/pysam-0.14.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,473 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/97/bb/65b3a258ffca71251ae1d07c1d3eb54448da31ee74106e49e2f251f066d4/pysam-0.14.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,474 Found link https://files.pythonhosted.org/packages/fc/9b/4bb8d016406dcff47e2866e14d3dcb10741ec3920649e8c521996830944f/pysam-0.14.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.14.1 2023-09-23T11:18:20,474 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2f/d8/57e6c36c4069e3b240115b3cb98bf1d5a2989d76815aff14fb0149d27781/pysam-0.15.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,475 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dc/af/c14708a4d43effb82bd14302e41e9fa818b724ada9b9d89283319a22a585/pysam-0.15.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,476 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/15/77/2e258a5ff090226516c4338d682c6f8ed13e5be2ac7a67e6b452b04b0237/pysam-0.15.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,476 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/5d/d96d3662647a3cf33b1e3fe6d21eaecd00f47d39edbe4cd85486639cb603/pysam-0.15.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,477 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/da/6a0cc06c65acaea0b8830e632712d53fa8bc88ea19096038b3bef22b25da/pysam-0.15.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,477 Found link https://files.pythonhosted.org/packages/f9/c4/f1b6963a05f415aa69c8efd64ebe460d56d03ecc75db70b0e8606b589ade/pysam-0.15.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.0 2023-09-23T11:18:20,478 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b4/d8/9afa92bd4b48ebd6896d22bb7cdaeb5aa4577983333df5e99160c62fb6ff/pysam-0.15.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,478 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/66/6b/f1a4f142d884b6e1cda6542bf4b89ce88ad8465197511d83994f2cf6484d/pysam-0.15.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,479 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/69/5f/030c774b44932d2e23d773558679d553fb31dd5ecdb094b8e26b316de784/pysam-0.15.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,479 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/37/27/7d7ce83c0acac59b95849f2fb678484147f1e1393162ee0975cb7f84e53c/pysam-0.15.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,480 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6f/f4/e12faf1618e977a868fe66d40288fc3dd989a10cc4c77603da33a7634a18/pysam-0.15.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,481 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1e/04/3e22a04ade5291e968b3f3e9195929574221d86fd8982a4976a40b045060/pysam-0.15.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,481 Found link https://files.pythonhosted.org/packages/73/59/c319f1bde3019bbce4583cecb12b9e3e52ffcfbe2c96d8b1fb131c0d4fb7/pysam-0.15.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.1 2023-09-23T11:18:20,482 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/7d/68b6555c7bb414b655495305d2add784c251fc83d4e698878e6d1d35fc9a/pysam-0.15.2-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,482 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0f/bd/f5ab828a9ff45a6ca14d5ea2a3580f720134052db258cd7ef929a4ed1d7a/pysam-0.15.2-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,483 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4b/04/d5a6386b6d124bcdf27d81ab952e5d24e37ff98b97f992aa5b83c647e9c9/pysam-0.15.2-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,484 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/aa/e6/0b18d30c30e3690c5774446c1d7246c5e37c4710e38d93a20bb56cad4bc0/pysam-0.15.2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,484 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/fc/d2be1a093bd8494ab63e3168aca36c2494753bbff190f3201ce2e7da9cda/pysam-0.15.2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,485 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/1a/4fd27da2d19f7d914f757097605709a6509776b4cb63f42bca63f3531058/pysam-0.15.2-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,485 Found link https://files.pythonhosted.org/packages/15/f6/ce0611aaa1865a616f7dc164fbf046eaf38f2b17c6d404403c56250beb93/pysam-0.15.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.2 2023-09-23T11:18:20,486 Found link https://files.pythonhosted.org/packages/15/e7/2dab8bb0ac739555e69586f1492f0ff6bc4a1f8312992a83001d3deb77ac/pysam-0.15.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.3 2023-09-23T11:18:20,486 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/bc/99/5b711afad53f7ebdafc182bae1642fd764e569a8c0de9408ea6138c668b0/pysam-0.15.4-cp27-cp27m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,487 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/28/60742ebf8afa6efdf7d2cc3552cbef24da33bf0f76b26b5afef2406683fd/pysam-0.15.4-cp27-cp27m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,487 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f2/c1/8f1562c2b89bc5606a3e8c57add0078af4cee3050507eac4b67b37309b16/pysam-0.15.4-cp27-cp27m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,489 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0e/f3/2b9802c61089f6c94c73f902f17046c416793da9242dfe73462e79ec4635/pysam-0.15.4-cp27-cp27mu-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,490 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/68/7b/a54f66a8b126c0d6eefa3f71ebdd46bf967c0452759b553432e845e927f3/pysam-0.15.4-cp27-cp27mu-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,491 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a9/c6/a337077e2cbae228a7f1b0ee1d97b240609c9377b6d46df9dc0a477eff73/pysam-0.15.4-cp35-cp35m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,491 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/55/9c/b064140318b64910f0a7938b385f10b88428aaa50f720038b2927a7db908/pysam-0.15.4-cp35-cp35m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,494 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3f/b4/075c25bf8e1aaa11d178fdfe267d73f1ea14f9e90ecb0fe58cb98911bdc5/pysam-0.15.4-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,495 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b2/78/df321a985e93be0d2dbf2249e9d79a33131381e8d9ef5c965db643183561/pysam-0.15.4-cp36-cp36m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,497 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/cc/a9546377a762a84bd17ca313f182e8eba833e579a568c3d62571edd8c2f7/pysam-0.15.4-cp36-cp36m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,497 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/01/2be4def91aeb50ccb963879b8193ca667087308696f2fe6aa86c6da9db72/pysam-0.15.4-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,500 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c1/b9/4a37921da49d89c855b0fae747843b7d07187edd4f35d0069a7b02ce89cc/pysam-0.15.4-cp37-cp37m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,500 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7e/46/d3abc41217b9cdd97109ab648094915ea55038bfa1d7d880012652704b37/pysam-0.15.4-cp37-cp37m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,501 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/63/ee/2c5dacd21d02d3bb7c7baf03dba8f42bc4af8b02370b7e52b6e5425d2366/pysam-0.15.4-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,501 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ae/1d/8569d5bb7592afa48796e2fc743372eb690c776fe21dce0ccb9607a202cd/pysam-0.15.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,502 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d3/77/b885532e487e15db1b78fa2ecf00ef6edf5f4743025080941f60924da6ea/pysam-0.15.4-cp38-cp38-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,502 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/78/63/0e143ae469f418cfab28fb165936d4101e1b813e3ce657762d51723ab38a/pysam-0.15.4-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,503 Found link https://files.pythonhosted.org/packages/25/7e/098753acbdac54ace0c6dc1f8a74b54c8028ab73fb027f6a4215487d1fea/pysam-0.15.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.4 2023-09-23T11:18:20,503 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f7/55/6f5ce9cfe9631c32b58d50be54b2d1ef7e53937d6e9208ac98ea41cc264b/pysam-0.16.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,504 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1d/c6/49045eba4ae325d15e9de03802a633fe0d8e9ac2d02ad6de723ca99a9772/pysam-0.16.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,505 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9c/24/537e86533e773c3dcb6bd05de60bf118cf8ccf60dcf24386a5c3807120bd/pysam-0.16.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,505 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/87/92/44f62c9b75b8f01f4671e7d4ac0951d3379126c7e2d280ebdcba3d7cb0df/pysam-0.16.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,506 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f9/21/dc7ec647d83a21a3b805a20f0039f466d5cfd4acc40f411aaf78da83ebb4/pysam-0.16.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,506 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b6/ad/442c56d798a3e8c762f71af8c8c7f75c16599f6e51e1f6dd4df1688ad6d7/pysam-0.16.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,507 Found link https://files.pythonhosted.org/packages/18/74/69018650a6ec9dae2eb2f710e158fa395134ce579c605f152e41890e7f3c/pysam-0.16.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.16.0 2023-09-23T11:18:20,508 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9b/57/65c688a9f5757c82fc3954e5562725dbeaf3866f13d71d92d715263cd707/pysam-0.16.0.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,508 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9b/ab/a7f2637b5bc8fb278aa9b5a5d4eab70856625c09b1d95328e3b78132847c/pysam-0.16.0.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,509 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ca/09/ad780f4430777a7bfca63ee2d4d4584436d2f31f010d6bab743cfc97da48/pysam-0.16.0.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,510 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/87/a1/73e80a7a873f3fb0e52d368a4343eb9882b737c932b95020d82251f1087e/pysam-0.16.0.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,510 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/85/335857b9888f6d9a13b03a8f21b0a6228b180c361631d9d70e7be3e22163/pysam-0.16.0.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,511 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8c/e6/a26fac418a7481b5ce1ffc162fe033edc9a935536f893a0838842c011371/pysam-0.16.0.1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,511 Found link https://files.pythonhosted.org/packages/99/5a/fc440eb5fffb5346e61a38b49991aa552e4b8b31e8493a101d2833ed1e19/pysam-0.16.0.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.16.0.1 2023-09-23T11:18:20,512 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a5/28/88c9bc6527429dc7de1e8eee674cea4c9c6a0e6791b711a7dcf28ce96592/pysam-0.17.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,512 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ac/88/721b1d38c80f8183887dadc96be3422cdad13fb0acc7ffa73594f9bf1dac/pysam-0.17.0-cp36-cp36m-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,513 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/03/ef/6e7342dbe0571fa078bd312f07dcb9b0693b89f8f6fbdf7876e4423374b9/pysam-0.17.0-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,513 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/99/f7/e01c12c24e73fdf2d87cc601ff119a4e175a6215efe9eb7b19c4ad37e22c/pysam-0.17.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,514 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/12/71/7b479540c2baf07a082cf266d0ca34c73f8c77298fad12942225c7d580ac/pysam-0.17.0-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,514 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d7/67/72012321601a2a0ff98903a4d5b71f695682baa034f10d6f675c9c8d0aea/pysam-0.17.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,515 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/4a/63786ee93e636a16c478a06aa2589fb9280eb41199dfc2182313ff56c3f8/pysam-0.17.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,516 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/05/02/9f79e6d100f3520e9dd33398ca5727d126fb81075ed78d797c3cf8eb8f3c/pysam-0.17.0-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,516 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/22/94/f6b8e682f9456ff7e29715207169c0eb2d5a98741d82bc89daf3fa048f7b/pysam-0.17.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,517 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/b6/1534473335178ece5b2133337564db90472b12b8dffe21124445b1847457/pysam-0.17.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,517 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/24/21/01fdca4c351f969629556a720599ea2daca3ce0bcf7cddc4b7c78b83da17/pysam-0.17.0-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,518 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8a/af/723d22ff52b846efdbb693e00e8bdbc39bdcb2952b1deeb8551a9c842691/pysam-0.17.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,519 Found link https://files.pythonhosted.org/packages/bf/a6/b1802ac26bb501ce8dada6f41dd83cdf591ecc834f2c208b07c6d97eba84/pysam-0.17.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.17.0 2023-09-23T11:18:20,519 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/63/9a/d75f5da85e0bd0f9f56a6a70dbd01a27c06dc6e22a5821b0ed38abf4b78a/pysam-0.18.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,520 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/77/72/e3ca6db84546a87fe2932c0078a6f85df62b5358e0a34ac7225bbc23fc52/pysam-0.18.0-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,520 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d8/01/c2917cad72433c4fad038b80cfd52eb79e9364636cd581efcc5fa1a6e0e0/pysam-0.18.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,521 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c5/10/a07e015f79b8f3a946a5f960cdf817e75bce99498acafc534b3355c73fa9/pysam-0.18.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,521 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dd/df/d556f87e14106fb467be0a0c9a960930f5e6d0d825c99060e248831a3457/pysam-0.18.0-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,522 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/69/9f/9be10fcf302feb446244d4691008a4899e94e19b3c8aeea461bd89c7ec3f/pysam-0.18.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,522 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ee/d2/ee6a3cb818db9c8cca8e7edd29526e2dca93fed1316a6c6cf7a9465a5b3b/pysam-0.18.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,523 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/06/0b/ae4a2a28d7f84f6bb09de5392e093c17a3d232b902b54bd3415b0919c9d8/pysam-0.18.0-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,524 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b9/bc/2df0c67e2c2d6130b01fa0e4f8c137d5749bfb3d618d1c6a7dab450133aa/pysam-0.18.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,524 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/35/9a/dd9abdaacae2c23982612a218810f866e3f82ef3925f305d640bc9df7f28/pysam-0.18.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,525 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4f/5a/cfb4cb6102335003a238e6d98e31ca23b42c9bef79cdf4ee55a1ab8b4cac/pysam-0.18.0-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,525 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/41/0f/4ffdea619a8898c936f6f1b909759486167976d761fc265f931119f0da1e/pysam-0.18.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,526 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/32/fb/4b78459c42ed9e7f5cee1304b6ecedcfcb74843619855ca4a1f15704a4bd/pysam-0.18.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,527 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/52/19/786e6b77ea6d3545ee145179da8d3d7a07ee9480a930ad6c647bf1e764f5/pysam-0.18.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,527 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/8b/13f22de05979c3aa2d2fb1c6627cf1846a59677ee457d30fe6e528d5938e/pysam-0.18.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,528 Found link https://files.pythonhosted.org/packages/15/79/00249a37089a6aecb70a4080f8af8d88e7005e2019c71e505c3ad3a0a018/pysam-0.18.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.18.0 2023-09-23T11:18:20,528 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/45/0a/2b0c483ea77567834b6e8185cd17cae2e40cca00534c5d8d61470b9efa90/pysam-0.19.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,529 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/17/4e4228ce33b8064b72266e68145911080eea227568a6b9c788e74ce5536f/pysam-0.19.0-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,529 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/a2/021bb0875543d0712823884c41b25e52189315a6081fdf53a32861382b37/pysam-0.19.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,530 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/b2/e1f9fff5d7c6afd26ff1b1798d5404822d99185cebbf3ade43ceed4e6a7b/pysam-0.19.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,530 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2e/a2/38e006ddb689d20c7842f7f00176f4f3c92a881350df67dde9c5894f8c7f/pysam-0.19.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,531 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ea/37/3c0c1ab1ad34d8c67db3052cb9301daeddedd3c84289b61cb95872324570/pysam-0.19.0-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,532 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/17/45/c5020545abf3138c1f94a5324bc59dba5b4e42634fafebb171dc6fe13574/pysam-0.19.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,532 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b7/49/a21697b94eac17fa3a73c419c8bf999f5bef8d37e03c3dbfc987c7709572/pysam-0.19.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,533 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e0/bb/26dabfedf33529cd17ea859450b46c2547b73aac6eff90573d1b8154abd1/pysam-0.19.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,533 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/da/70/79fec72c55234486f516684225a76903228511ba672783c245d0d4409a1b/pysam-0.19.0-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,534 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2a/6f/159e60484c50fabfac44783edce6208f1b8864eb001d690550a191f154b0/pysam-0.19.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,535 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/09/56/16bdbd513b9d9df090ce7d5d03eeaa26b794b109fefda4fb8af7165446b9/pysam-0.19.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,535 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/79/a7/da0e9848b3a78c5c3770e8b77ae3e46dc42f0f8e7f1239e825a7a9c1fac1/pysam-0.19.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,536 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dd/c5/8bb6517beb7acc3bb384ca98a66c9286003a946643bfd6de3ed1f9ea63a7/pysam-0.19.0-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,536 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3f/ee/24ddc6dd4425d83bf9fb0b24aa840134d99a09509d819b6b1393fcb27e16/pysam-0.19.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,537 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/41/4b65a3840c8bc14a4c97d9c66f66a6c08a30d8cc58ef9b45ee9de3bf5fe4/pysam-0.19.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,537 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/05/28/475ceedb85a8ef357af5b5394e9ef4ae0a317de651ff9ac6307e6f527b2d/pysam-0.19.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,538 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7e/fb/347f914e5873ec7405b95891fa605c3330d24462f00e7d230b7eb8e3df4c/pysam-0.19.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,538 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fa/31/570861d7b2eb6d605454a80ded377a0945bcc0cd19e804f29503d0f38aca/pysam-0.19.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,539 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/03/86/c40d02c99a7da3026ed69add5b2581a31f8d18676f2401811df227d17655/pysam-0.19.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,540 Found link https://files.pythonhosted.org/packages/ee/95/aef9a843807c00bb6b4e6c0cad0e69aa161ecc0591f3ece985fd24298f21/pysam-0.19.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.19.0 2023-09-23T11:18:20,540 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a7/82/968480f3e29bcc8dfd8b0a70654eb9e68f6b4d1e82e2a097615a8fa23d1a/pysam-0.19.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,541 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8f/fd/ff98658c0ca63a18269937330229447bcecda36845b896bc53b0ccf0e3c8/pysam-0.19.1-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,541 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b7/fd/2a054df7bed8080b6e973d5cece0c1a0b2b29fc7caec305bd74a957a4694/pysam-0.19.1-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,542 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/85/74/25e9707eca858bd1d838673798da26388e4bb70b5055e6a932857e8d7193/pysam-0.19.1-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,543 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/42/b8/22dca6472627ca6db890b8b96fe3072c1664bcc8dea0de72bc4ad5d5c06d/pysam-0.19.1-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,543 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4e/80/6a74aa85894649e1fe6c54cc967b34c5038184504b30babb2dfa4e659aca/pysam-0.19.1-cp36-cp36m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,544 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a3/16/9698f98a5158e6a54af67a690791e96de5e7bec25fc0a85c71f07562d4dc/pysam-0.19.1-cp36-cp36m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,544 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/76/a240c320d38f7b1b0276ec813a86b62706d0889e10e45a3b75199d46d21d/pysam-0.19.1-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,545 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/9a/b5331a776d809d480ae8de43e3dfd4f4f95e0c8fde2ae7ba1834f55541c1/pysam-0.19.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,545 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/06/3f/19b41f46e1d3d87c436953561d58b13cd7cb0d1cb427dab43219ac772d21/pysam-0.19.1-cp37-cp37m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,546 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a3/df/d21eb45113df10eed4643a3dccc88dcc9ffaaaa68b05cc64c95224e17682/pysam-0.19.1-cp37-cp37m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,546 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/aa/8d3f39218e6195306226bde4501ca472ea6a949bffaae3ed524a0979d197/pysam-0.19.1-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,547 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f5/b8/0d014ca37b39e082de98c8e663082ffc2dae5ee96ce9781527f5f8e1339d/pysam-0.19.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,547 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/39/d6/3dcb9d0304c265e95bf2f75e1f3caa1c9994569215f513f164bef22b8ff6/pysam-0.19.1-cp38-cp38-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,548 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/16/3a/c8705be2ef8c58abf5acd99d9acc4da2b4587db883622fbbe4064d79cd7d/pysam-0.19.1-cp38-cp38-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,548 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a8/69/4618c6f6fc55fc014f32b273d572244244180dd2c38c21b3a4bd4b7db482/pysam-0.19.1-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,549 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c2/ba/ad4f8bf3c1040c383480315dc95430c191ae5efc90e425498b84f7b277d5/pysam-0.19.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,549 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/18/87/deed4855181dd5c2ebd0781aa80e8d2978d43b0ce0faefec609b45bd2767/pysam-0.19.1-cp39-cp39-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,550 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a8/21/97ca4f1e0766aae90bce672581edfbd791656f7b65689dc38de6c906ee86/pysam-0.19.1-cp39-cp39-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,551 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a6/b8/ca778d0daaf989a10afac71db2427784b430b2b73c586cb9a0bfa408afd4/pysam-0.19.1-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,551 Found link https://files.pythonhosted.org/packages/a0/10/f6d705984838f8620ff597dd99d3904aea7727b4824bee22de8f44b4ebd4/pysam-0.19.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.19.1 2023-09-23T11:18:20,552 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/12/e8/1157591647bef8afbdda82b3a9aeeacc3b57dcff22ec546b2b7dc03641a2/pysam-0.20.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,553 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/10/b5/1fe09bbff3ea6bbb6d8211758736327144c00505204a942bb312f5a869c1/pysam-0.20.0-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,554 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/67/42f8148cdc23559593023a4394b3043c280efc1439dd2f5f414f38e6f2c1/pysam-0.20.0-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,554 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/17/90/6408a9015530685cc76182605ffc3ec5ecf20c194ef2fcca287b289d36e2/pysam-0.20.0-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,555 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d4/48/35ffba4dcfda138c0722fefa986584d53614c2d049ab1fb67d9d87a00c0a/pysam-0.20.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,555 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/76/2d/0d56cdb2b0a8a9823a3a221a551d6c630815f0c407a33d5ce1c47910029a/pysam-0.20.0-cp36-cp36m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,556 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b2/23/7091e3182e685a7832425178f6b6e73593f9cff0ba51b5a71b43ef2525b9/pysam-0.20.0-cp36-cp36m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,557 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e8/2c/f989a55927eb416520e64ee711665ef589b8095a385c2564e1e15226e597/pysam-0.20.0-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,557 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ec/6a/8d73eda449bede59734254688ccb182493667467aa8c2be0dbf64fa68689/pysam-0.20.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,558 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/65/e69e94905ea18ee478066b96863ef2d91f026661f4bb18106f6b0a532f24/pysam-0.20.0-cp37-cp37m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,559 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d9/49/a5d747be0e8f0044f52610ceed25b27a15a419b3f46f425507636f137484/pysam-0.20.0-cp37-cp37m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,560 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1a/f1/05fa22e7917afa8b0506d9dadc885324544f759d8a25cdd331bdad47d580/pysam-0.20.0-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,560 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c3/2c/23e8e5cdd6a91a50923653a77c05db872f865a43becac463f0b2963a8199/pysam-0.20.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,561 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/31/e7/019194574aa007c7dd6fe7ac1558d540fb397da4e8eb765542fdb92ec25b/pysam-0.20.0-cp38-cp38-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,562 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/34/3a/b0d850cfd1fc16ebfd44015af3dfe300eb3f7a39f495629b30685daa9e50/pysam-0.20.0-cp38-cp38-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,563 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/58/3f/746463a52b7e43ccd7ace167a4c64f96cb8a5fcd14a3cdae9c36deb28d41/pysam-0.20.0-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,563 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/f8/db158ef30ca895c78c9265f70be9c8e225857d2aa62825d879c775879cf7/pysam-0.20.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,564 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fd/97/91a89da0db78e9f60d9107131b5725dd114d6c109cd78728b1c793dd884d/pysam-0.20.0-cp39-cp39-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,565 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2c/22/85a2be2a21e3c31657b6c4726237dd1335faff64aeadb999f31671a3cbb5/pysam-0.20.0-cp39-cp39-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,565 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ad/dc/93c92f425e61b22ae175cf4a83d8ba192bc82e9671f1cce262a92ae86911/pysam-0.20.0-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-09-23T11:18:20,566 Found link https://files.pythonhosted.org/packages/e3/ad/b300abaf0de2834104b671db5aebe71616d7a36fa09a2b8a03068eb7e932/pysam-0.20.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.20.0 2023-09-23T11:18:20,566 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/f8/301c2f966eeefa53ed5447b8909a7b123971d711794efe787dc2601ab9b4/pysam-0.21.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,567 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9f/d1/b5a212aeb99ba3a17a93ea5846bc36fd0c9e5dc26d9395c89b72243813ca/pysam-0.21.0-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,568 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8e/6b/48e0bed14999ca1c6bf9c8127d9c0df9bd0de97159d4d8169aed0e2a1e9d/pysam-0.21.0-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,569 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/ba/d9a85addaaceb6e64e07498aa2f49c34851c72e1c367e91b43b47a6cdd91/pysam-0.21.0-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,569 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/b8/25f28c27f0f002172d02be5f8c7f65d13ee4535193da7690b32e84f04e53/pysam-0.21.0-cp311-cp311-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,570 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/44/a7/efdfb962af008eb2f0425885a230a7dc288de1bb2f09dde3d938a2ee540a/pysam-0.21.0-cp311-cp311-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,571 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/54/5d/147329f6731e3a04bc0b9be1561eaff5ae739451636e8215ab70dc2aaedf/pysam-0.21.0-cp311-cp311-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,571 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e0/b7/6e7629b3eb5758fe06a899847722c6f0b1836665e0b6f5420d5af2b855c5/pysam-0.21.0-cp36-cp36m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,572 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a9/03/fb071afcfc06d711f5526c4858ebeec0ee23d52f0a8bea3bed30d36e14d6/pysam-0.21.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,573 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/ce/9beb4abf34700b1af9a311970d644382b777218e98a791a60f504d6ec6f9/pysam-0.21.0-cp37-cp37m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,574 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/91/f53b59e9e273e2c906db2696b92eedc7d9e5f9d2d62134274b8316193f83/pysam-0.21.0-cp37-cp37m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,574 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/69/4e/cdbe48bd15a9183b89864f54b838f4b7a39f12fe9fe407140e05601e48ba/pysam-0.21.0-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,575 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c8/7b/4f2edd7020716f37a94bcb6e30eb2957fcfdfb1accd52856702a075dd7da/pysam-0.21.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,576 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a1/e0/767a3a55fdb539e931614f0bd74761c693c1475a8413dc9862ede27cec25/pysam-0.21.0-cp38-cp38-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,576 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3d/28/7ad11b60fce5d7fbd98f97996547f682d19dc0dcb287e7d0bfb26dab7364/pysam-0.21.0-cp38-cp38-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,577 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/87/d973a869f38c8d0c85e9ec2b588963974506971508bc343b0618708b6ec1/pysam-0.21.0-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,577 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f0/2a/c03e854221f6987f1c03b833dd469b662ea80e5bc63597d171167d64b8a4/pysam-0.21.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,578 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/0a/3d683e7f753d55d55cd1074afe6b5c631efabd10167f37b45ba4b1208d7d/pysam-0.21.0-cp39-cp39-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,579 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ec/4f/92accd8e20473087805de5ec2ade5f206ad2e1de78d32ee59abc04645d3c/pysam-0.21.0-cp39-cp39-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,580 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7d/55/709217f47472dfaedb0e3fa9462dfdcdbe809e1ed84cc0de54b5d11842dc/pysam-0.21.0-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,581 Found link https://files.pythonhosted.org/packages/16/1c/a4999d93d6fd7791349f0822e1674b39971fe30d3b99638209ae6de3dfc7/pysam-0.21.0.tar.gz (from https://pypi.org/simple/pysam/) (requires-python:>=3.6), version: 0.21.0 2023-09-23T11:18:20,582 Fetching project page and analyzing links: https://www.piwheels.org/simple/pysam/ 2023-09-23T11:18:20,583 Getting page https://www.piwheels.org/simple/pysam/ 2023-09-23T11:18:20,585 Found index url https://www.piwheels.org/simple/ 2023-09-23T11:18:20,798 Fetched page https://www.piwheels.org/simple/pysam/ as text/html 2023-09-23T11:18:20,836 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.21.0-cp39-cp39-linux_armv7l.whl#sha256=c9e522129e90c8727fdf653d86d9dd8a1c770aaae42c25cabed1688ef323c1e5 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,836 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.21.0-cp39-cp39-linux_armv6l.whl#sha256=c9e522129e90c8727fdf653d86d9dd8a1c770aaae42c25cabed1688ef323c1e5 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,837 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.21.0-cp37-cp37m-linux_armv7l.whl#sha256=9c3272be6b4de106121816d6293381c004b78ba8a3d7307e48b0a594cef33224 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,837 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.21.0-cp37-cp37m-linux_armv6l.whl#sha256=9c3272be6b4de106121816d6293381c004b78ba8a3d7307e48b0a594cef33224 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-09-23T11:18:20,838 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.20.0-cp39-cp39-linux_armv7l.whl#sha256=02833470b689b5f0801b783b4d39663d1fd225749f8246f0e0e22c31894a30ee (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,838 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.20.0-cp39-cp39-linux_armv6l.whl#sha256=02833470b689b5f0801b783b4d39663d1fd225749f8246f0e0e22c31894a30ee (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,839 Skipping link: No binaries permitted for pysam: 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https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,841 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp37-cp37m-linux_armv7l.whl#sha256=2330513e39b52a262391ff1a6d42ed45855452935626eebcc5d881eb4be1b2c1 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,842 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp37-cp37m-linux_armv6l.whl#sha256=2330513e39b52a262391ff1a6d42ed45855452935626eebcc5d881eb4be1b2c1 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,843 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp35-cp35m-linux_armv7l.whl#sha256=ff1cdd21402402c39bafb46fe2a8a7ce876b42357bca356a304320b873cb2282 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,843 Skipping link: No binaries permitted for pysam: 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https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,847 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.0-cp35-cp35m-linux_armv6l.whl#sha256=7e6c3ed0b982b419a6598567be404d2d3950648edae8f3abd3c23d3e7d98d163 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,848 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp39-cp39-linux_armv7l.whl#sha256=bced640fbf8ace81d87f3987edb796cd87595e2187087985e55a19a09f61beae (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,848 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp39-cp39-linux_armv6l.whl#sha256=bced640fbf8ace81d87f3987edb796cd87595e2187087985e55a19a09f61beae (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,849 Skipping link: No binaries permitted for pysam: 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https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,852 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp39-cp39-linux_armv7l.whl#sha256=eaf2bc89169869052d491a0d13c93889b72d0f8eb53fa05805ac3f4dac239b59 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,853 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp39-cp39-linux_armv6l.whl#sha256=eaf2bc89169869052d491a0d13c93889b72d0f8eb53fa05805ac3f4dac239b59 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,853 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp37-cp37m-linux_armv7l.whl#sha256=2fc2f9d80047eb421cc31c6ae3a0c03344b1d5f4dd4d930bf3a77a1c996ff4d5 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,854 Skipping link: No binaries permitted for pysam: 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https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,857 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp39-cp39-linux_armv6l.whl#sha256=5dd1936e862f220b58ec528032224b67ebb11d86663004141e538c25818d7d5d (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,858 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp34-cp34m-linux_armv7l.whl#sha256=eda5dc98fdf3820ff830d0bfdcf4f1cd4b165073480d35425d31270ff4461e91 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,858 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp34-cp34m-linux_armv6l.whl#sha256=eda5dc98fdf3820ff830d0bfdcf4f1cd4b165073480d35425d31270ff4461e91 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,859 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp35-cp35m-linux_armv6l.whl#sha256=8653f518db5c738aab3b6a12e0fbfd36245ddd78375cee9a0f6e5c066070f892 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,859 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp35-cp35m-linux_armv7l.whl#sha256=8653f518db5c738aab3b6a12e0fbfd36245ddd78375cee9a0f6e5c066070f892 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,860 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp37-cp37m-linux_armv7l.whl#sha256=f6c36385a1dd01a86450694e529557dbcb2c25fd6b7e16faf219e0f4c5c4c3ee (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,860 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp37-cp37m-linux_armv6l.whl#sha256=f6c36385a1dd01a86450694e529557dbcb2c25fd6b7e16faf219e0f4c5c4c3ee (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,861 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp39-cp39-linux_armv7l.whl#sha256=f362a21d3d76e12110a57f6a4318e7c6ce8d4428993de45100ee729c34870663 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,861 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp39-cp39-linux_armv6l.whl#sha256=f362a21d3d76e12110a57f6a4318e7c6ce8d4428993de45100ee729c34870663 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,862 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp34-cp34m-linux_armv7l.whl#sha256=be9af17f6da8f632329820756855738acaa0af49cfec713f718923b46a300231 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,863 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp34-cp34m-linux_armv6l.whl#sha256=be9af17f6da8f632329820756855738acaa0af49cfec713f718923b46a300231 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,863 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp35-cp35m-linux_armv7l.whl#sha256=3f2ab4eb88bd29ebdadb6a030db9daa1a08093930c19ee9d6d2e132d3cc7fbfb (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,864 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp35-cp35m-linux_armv6l.whl#sha256=3f2ab4eb88bd29ebdadb6a030db9daa1a08093930c19ee9d6d2e132d3cc7fbfb (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,864 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp37-cp37m-linux_armv7l.whl#sha256=0ea8f2a31eb4fe9b63faa9568018f24905a3eec27d604487bf016925d66a5e6b (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,865 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp37-cp37m-linux_armv6l.whl#sha256=0ea8f2a31eb4fe9b63faa9568018f24905a3eec27d604487bf016925d66a5e6b (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,866 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp39-cp39-linux_armv7l.whl#sha256=4cfa381ee91c4311118a9780b7b07170f4f9550e5d5e4dd0da3bd4a16d7786fb (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,866 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp39-cp39-linux_armv6l.whl#sha256=4cfa381ee91c4311118a9780b7b07170f4f9550e5d5e4dd0da3bd4a16d7786fb (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,867 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp37-cp37m-linux_armv7l.whl#sha256=7cb3ca927656dba4156f14b6b3610b966278b18f444e00aea9ffac982ba819d1 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,867 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp37-cp37m-linux_armv6l.whl#sha256=7cb3ca927656dba4156f14b6b3610b966278b18f444e00aea9ffac982ba819d1 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,868 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp35-cp35m-linux_armv6l.whl#sha256=514cc53d8ace068080cb48124d3a172bcad548b5fcb5c283c3c3595d5837c924 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,868 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp35-cp35m-linux_armv7l.whl#sha256=514cc53d8ace068080cb48124d3a172bcad548b5fcb5c283c3c3595d5837c924 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,869 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp35-cp35m-linux_armv7l.whl#sha256=5c047d54e81b6a5b5e981f5cb06c1a254a88430aab077f1383a46f1cf3a89c53 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,869 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp35-cp35m-linux_armv6l.whl#sha256=5c047d54e81b6a5b5e981f5cb06c1a254a88430aab077f1383a46f1cf3a89c53 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,870 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp37-cp37m-linux_armv7l.whl#sha256=8c6118b4d383a61894eae23d146e36c0f0afdf8b5743c53eab210b7211a4eb6b (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,870 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp37-cp37m-linux_armv6l.whl#sha256=8c6118b4d383a61894eae23d146e36c0f0afdf8b5743c53eab210b7211a4eb6b (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,871 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp37-cp37m-linux_armv6l.whl#sha256=3d027ddcbfc55b9a3f2d7783d1c40d6a7f4aac2f5553ff18b18b9a2db18c8818 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,871 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp37-cp37m-linux_armv7l.whl#sha256=3d027ddcbfc55b9a3f2d7783d1c40d6a7f4aac2f5553ff18b18b9a2db18c8818 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,872 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp34-cp34m-linux_armv7l.whl#sha256=5d8b5904f634744175e0a043ed83158fed4b4f550eda55f17f1daebdb8b96b55 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,872 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp34-cp34m-linux_armv6l.whl#sha256=5d8b5904f634744175e0a043ed83158fed4b4f550eda55f17f1daebdb8b96b55 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,873 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp35-cp35m-linux_armv7l.whl#sha256=820073712c7e0bf84113e262c24f403dc5cc2c1e99fdd2e4136805108492e779 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,874 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp35-cp35m-linux_armv6l.whl#sha256=820073712c7e0bf84113e262c24f403dc5cc2c1e99fdd2e4136805108492e779 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,874 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp37-cp37m-linux_armv6l.whl#sha256=4cf9c66d12eab8e186c6f9ae62025a81a1571339aa90fa8620e599e6b5914096 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,875 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp37-cp37m-linux_armv7l.whl#sha256=4cf9c66d12eab8e186c6f9ae62025a81a1571339aa90fa8620e599e6b5914096 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,875 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp35-cp35m-linux_armv6l.whl#sha256=36c58484ffb0bc79775ede3b973fa8119a25e285a9aa1fd925c7b2a7585cd96f (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,876 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp35-cp35m-linux_armv7l.whl#sha256=36c58484ffb0bc79775ede3b973fa8119a25e285a9aa1fd925c7b2a7585cd96f (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,876 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.0-cp35-cp35m-linux_armv6l.whl#sha256=40b2010ca6af5e85f9945799141129378049c795c08e72e1902be7afa7d8760c (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,877 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.0-cp35-cp35m-linux_armv7l.whl#sha256=40b2010ca6af5e85f9945799141129378049c795c08e72e1902be7afa7d8760c (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,877 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp34-cp34m-linux_armv6l.whl#sha256=6809122ab699bd5343f81145b23d4b92fc0c763836707bf7a880cf0dfd6124c1 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,877 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp34-cp34m-linux_armv7l.whl#sha256=6809122ab699bd5343f81145b23d4b92fc0c763836707bf7a880cf0dfd6124c1 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,878 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp35-cp35m-linux_armv7l.whl#sha256=5fc63ab19662a4ca7867b75a6b7a7c3572efd7dc7df32334fd63bd4aaf889c77 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,879 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp35-cp35m-linux_armv6l.whl#sha256=5fc63ab19662a4ca7867b75a6b7a7c3572efd7dc7df32334fd63bd4aaf889c77 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,879 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp34-cp34m-linux_armv6l.whl#sha256=7162669bbd0f8d7b5550fecaa602a09bb12f82e5d355c23e65b27fa86628ce58 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,880 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp34-cp34m-linux_armv7l.whl#sha256=7162669bbd0f8d7b5550fecaa602a09bb12f82e5d355c23e65b27fa86628ce58 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,880 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp35-cp35m-linux_armv6l.whl#sha256=df8dc9fd830a1e2e415d0e8066351e70e1a332e25f7e77c39a28580e9ce44fd3 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,881 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp35-cp35m-linux_armv7l.whl#sha256=df8dc9fd830a1e2e415d0e8066351e70e1a332e25f7e77c39a28580e9ce44fd3 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,882 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp34-cp34m-linux_armv7l.whl#sha256=11aaa19bb5ed9aa6d8c7966168380dfef9a21071e47c8b51b8a6d27938178859 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,882 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp34-cp34m-linux_armv6l.whl#sha256=11aaa19bb5ed9aa6d8c7966168380dfef9a21071e47c8b51b8a6d27938178859 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,883 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp35-cp35m-linux_armv6l.whl#sha256=d63b372a841d42bbc4c63b6147419a3174c1382c2188ac9560e195f44a06de72 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,883 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp35-cp35m-linux_armv7l.whl#sha256=d63b372a841d42bbc4c63b6147419a3174c1382c2188ac9560e195f44a06de72 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,884 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12.0.1-cp34-cp34m-linux_armv7l.whl#sha256=448531babc920f3709eac98ea2cf570cc10d0f7aa1b1e9be63ae30ed486e9b2c (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,884 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12.0.1-cp35-cp35m-linux_armv7l.whl#sha256=1632c7664591cdf1025c90d351eadf4e982f22e8eb5265f101e8c1bad3f2bfcc (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,885 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12.0.1-cp35-cp35m-linux_armv6l.whl#sha256=1632c7664591cdf1025c90d351eadf4e982f22e8eb5265f101e8c1bad3f2bfcc (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,885 Skipping link: No binaries permitted for pysam: 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2023-09-23T11:18:20,887 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp35-cp35m-linux_armv6l.whl#sha256=1f1f6f20aec143dc81cdc6ea8fb982878908d6be7fb215138f52a317af39b007 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,888 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp34-cp34m-linux_armv6l.whl#sha256=8b007f54c76d032f142f66ce3f52ab28ecbfe04b90140f1c094c7ee27a8efc20 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,888 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp34-cp34m-linux_armv7l.whl#sha256=8b007f54c76d032f142f66ce3f52ab28ecbfe04b90140f1c094c7ee27a8efc20 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,889 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp35-cp35m-linux_armv6l.whl#sha256=541b1cec39154bca0eb370ea340d25e5f99906d5ab48ac2e9a6e36d07fe62acb (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,890 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp35-cp35m-linux_armv7l.whl#sha256=541b1cec39154bca0eb370ea340d25e5f99906d5ab48ac2e9a6e36d07fe62acb (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,890 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp34-cp34m-linux_armv6l.whl#sha256=9f13d6f9766fa718aab7a502acbeab90b9d973cd6104099d296c2123e17df4c8 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,891 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp34-cp34m-linux_armv7l.whl#sha256=9f13d6f9766fa718aab7a502acbeab90b9d973cd6104099d296c2123e17df4c8 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,891 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2-cp35-cp35m-linux_armv6l.whl#sha256=3fd464df4ebf726c766df1e7259bf9ed27efbd15b054fea9ff61317c1642bdff (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,891 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2-cp35-cp35m-linux_armv7l.whl#sha256=3fd464df4ebf726c766df1e7259bf9ed27efbd15b054fea9ff61317c1642bdff (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,892 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp34-cp34m-linux_armv6l.whl#sha256=130adc0c1b0f703615373fe89ccad779c842d4f817d9eee51cb4d7f1d583fb66 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,892 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp34-cp34m-linux_armv7l.whl#sha256=130adc0c1b0f703615373fe89ccad779c842d4f817d9eee51cb4d7f1d583fb66 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,893 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp35-cp35m-linux_armv7l.whl#sha256=38bdff111afd0e08e7c45083834ff94f952d6b1d721effe141ee16709e8c43a9 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,893 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp35-cp35m-linux_armv6l.whl#sha256=38bdff111afd0e08e7c45083834ff94f952d6b1d721effe141ee16709e8c43a9 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,894 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11-cp35-cp35m-linux_armv7l.whl#sha256=9e42cacee2c0d3d6262960825be47e53245b36b9176166d7a0c8b34793ab3e4c (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,894 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11-cp35-cp35m-linux_armv6l.whl#sha256=9e42cacee2c0d3d6262960825be47e53245b36b9176166d7a0c8b34793ab3e4c (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,895 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11-cp34-cp34m-linux_armv6l.whl#sha256=caa6a1fe172960233e539844a6ec94ff5f730450b8e5d75546ed95e72093d251 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,895 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11-cp34-cp34m-linux_armv7l.whl#sha256=caa6a1fe172960233e539844a6ec94ff5f730450b8e5d75546ed95e72093d251 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,896 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.10.0-cp35-cp35m-linux_armv6l.whl#sha256=430e1e1aac92b57c6061b2b035d1ce4a896772fdaecc3a7a6c79d20636998060 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,896 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.10.0-cp35-cp35m-linux_armv7l.whl#sha256=430e1e1aac92b57c6061b2b035d1ce4a896772fdaecc3a7a6c79d20636998060 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,897 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp35-cp35m-linux_armv6l.whl#sha256=e08db72fe5fe0c0fdaaa68e90317bfd49d91724f88a0c7336ee58cb5434e057f (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,898 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp35-cp35m-linux_armv7l.whl#sha256=e08db72fe5fe0c0fdaaa68e90317bfd49d91724f88a0c7336ee58cb5434e057f (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,898 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp34-cp34m-linux_armv6l.whl#sha256=6d5642b4b9d4406ee1c1a1e6707988f7e1e1eb95175d6e696db12cc33239bdbc (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,899 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp34-cp34m-linux_armv7l.whl#sha256=6d5642b4b9d4406ee1c1a1e6707988f7e1e1eb95175d6e696db12cc33239bdbc (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,899 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp34-cp34m-linux_armv6l.whl#sha256=91ff3cf00dd79a8388f4cc57b59b16e6b526c4162d6f76e880cfb98f9861d70d (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,900 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp34-cp34m-linux_armv7l.whl#sha256=91ff3cf00dd79a8388f4cc57b59b16e6b526c4162d6f76e880cfb98f9861d70d (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,900 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp35-cp35m-linux_armv7l.whl#sha256=a80a0b5409d947fd714eee1f6d5e417d80c81116ea054ad449f66cfffe7faef9 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,901 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp35-cp35m-linux_armv6l.whl#sha256=a80a0b5409d947fd714eee1f6d5e417d80c81116ea054ad449f66cfffe7faef9 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,901 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp35-cp35m-linux_armv6l.whl#sha256=c720ae8dd1d59c930e40bd060397fa5a19b3ee23f5bf285b6691799ea1585c6f (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,901 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp35-cp35m-linux_armv7l.whl#sha256=c720ae8dd1d59c930e40bd060397fa5a19b3ee23f5bf285b6691799ea1585c6f (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,902 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp34-cp34m-linux_armv6l.whl#sha256=92f79453d075cab8b9c95cc0a346d4190c95f9648f1edb66ed894e5fb1fae0b3 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,903 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp34-cp34m-linux_armv7l.whl#sha256=92f79453d075cab8b9c95cc0a346d4190c95f9648f1edb66ed894e5fb1fae0b3 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,903 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp34-cp34m-linux_armv6l.whl#sha256=44559cce52369b4859a83b983afc5ab44d4a8757199ec1e09dad43c503615f26 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,904 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp34-cp34m-linux_armv7l.whl#sha256=44559cce52369b4859a83b983afc5ab44d4a8757199ec1e09dad43c503615f26 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,904 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp35-cp35m-linux_armv6l.whl#sha256=c1bd616061b68894916b9830ac6e0c3bda4cf391b2e0b12dc1909f09fdef5e1a (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,905 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp35-cp35m-linux_armv7l.whl#sha256=c1bd616061b68894916b9830ac6e0c3bda4cf391b2e0b12dc1909f09fdef5e1a (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,906 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp35-cp35m-linux_armv7l.whl#sha256=8fd5cdc4e53ddd0cf566144d5bb0e6cd9e48f30e2f2e689a08929c7fe6436adb (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,906 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp35-cp35m-linux_armv6l.whl#sha256=8fd5cdc4e53ddd0cf566144d5bb0e6cd9e48f30e2f2e689a08929c7fe6436adb (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,906 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp34-cp34m-linux_armv6l.whl#sha256=eb027c4d0ca3fe3db175bb40d240b0006948161df1f6aee9bb37026023ed6ad1 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,907 Skipping link: No binaries permitted for pysam: 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2023-09-23T11:18:20,909 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp34-cp34m-linux_armv7l.whl#sha256=339bad8ad3b9679676c129c90dec0e50726b9718bb1cb947865efbc0aed518c0 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,909 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp35-cp35m-linux_armv6l.whl#sha256=0f6e3e082682baee36123ad2dfdccc21ca209d7f6138ae8aa7eaa6cf846b463b (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,910 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp35-cp35m-linux_armv7l.whl#sha256=0f6e3e082682baee36123ad2dfdccc21ca209d7f6138ae8aa7eaa6cf846b463b (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,910 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp34-cp34m-linux_armv6l.whl#sha256=6847c5b03d052b38a4b9e2fecca445c28a2e1b739c6b78db6b35bb7059cc1edd (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,911 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp34-cp34m-linux_armv7l.whl#sha256=6847c5b03d052b38a4b9e2fecca445c28a2e1b739c6b78db6b35bb7059cc1edd (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,911 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp34-cp34m-linux_armv6l.whl#sha256=f9590cb1e4aa53d7fba838ab7f024ad1d6634af160a28030e42177d769107d7c (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,912 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp34-cp34m-linux_armv7l.whl#sha256=f9590cb1e4aa53d7fba838ab7f024ad1d6634af160a28030e42177d769107d7c (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,912 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp35-cp35m-linux_armv7l.whl#sha256=0e9f56eab761851799543b69d6789aedf7c3b4cf9f435b49924145ad17578da9 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,913 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp35-cp35m-linux_armv6l.whl#sha256=0e9f56eab761851799543b69d6789aedf7c3b4cf9f435b49924145ad17578da9 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,914 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp35-cp35m-linux_armv7l.whl#sha256=06d7abe7ada0496d0562d699f3870f16b053149fde78eb8161eee3d6a1804e06 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,914 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp35-cp35m-linux_armv6l.whl#sha256=06d7abe7ada0496d0562d699f3870f16b053149fde78eb8161eee3d6a1804e06 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,915 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp34-cp34m-linux_armv6l.whl#sha256=3922a006fb3ebf65663b7b939cbf5910c86f5a7296cb7a3872d48922b4d8c797 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,915 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp34-cp34m-linux_armv7l.whl#sha256=3922a006fb3ebf65663b7b939cbf5910c86f5a7296cb7a3872d48922b4d8c797 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,916 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp35-cp35m-linux_armv7l.whl#sha256=c81d7b98d9aed718e77d931e08c561c48a95c4ad3e041b26c88ca3673ecfcf7d (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,916 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp35-cp35m-linux_armv6l.whl#sha256=c81d7b98d9aed718e77d931e08c561c48a95c4ad3e041b26c88ca3673ecfcf7d (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,917 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp34-cp34m-linux_armv6l.whl#sha256=8539e2409d8466e0706c2c8022075f1e218ae4e0950f4747032fdf35f3d34d8e (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,917 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp34-cp34m-linux_armv7l.whl#sha256=8539e2409d8466e0706c2c8022075f1e218ae4e0950f4747032fdf35f3d34d8e (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,918 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp35-cp35m-linux_armv7l.whl#sha256=b20c922d81b119eba54e72ff66c829aec476e09664cd89d654556d740bec9b12 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,918 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp35-cp35m-linux_armv6l.whl#sha256=b20c922d81b119eba54e72ff66c829aec476e09664cd89d654556d740bec9b12 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,919 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp34-cp34m-linux_armv6l.whl#sha256=ec65574154de7191d834235df8d3e1eaf427adb45344a1f3641a1363e11734f5 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,919 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp34-cp34m-linux_armv7l.whl#sha256=ec65574154de7191d834235df8d3e1eaf427adb45344a1f3641a1363e11734f5 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,920 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.0-cp34-cp34m-linux_armv6l.whl#sha256=6030cc5a597c0317594de522e1ef9401e1ec4480d086fdcdc8fe61cedb149084 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,920 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.0-cp34-cp34m-linux_armv7l.whl#sha256=6030cc5a597c0317594de522e1ef9401e1ec4480d086fdcdc8fe61cedb149084 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,921 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.8-cp34-cp34m-linux_armv6l.whl#sha256=5ff0cd52bfbaf46b34fbfed5bcd5611ee602a28c3ef915ab04f80e8faff03906 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,922 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.8-cp34-cp34m-linux_armv7l.whl#sha256=5ff0cd52bfbaf46b34fbfed5bcd5611ee602a28c3ef915ab04f80e8faff03906 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,922 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.7-cp34-cp34m-linux_armv6l.whl#sha256=116fc51605a8eb89dba9220b844cbe8006453019223950169ea6337886e06de7 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,923 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.7-cp34-cp34m-linux_armv7l.whl#sha256=116fc51605a8eb89dba9220b844cbe8006453019223950169ea6337886e06de7 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,923 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.6-cp34-cp34m-linux_armv6l.whl#sha256=eff228d61049aef6592c8e93f2629f0b1e2a080b37065f21646ff9f393020207 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,923 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.6-cp34-cp34m-linux_armv7l.whl#sha256=eff228d61049aef6592c8e93f2629f0b1e2a080b37065f21646ff9f393020207 (from https://www.piwheels.org/simple/pysam/) 2023-09-23T11:18:20,924 Skipping link: not a file: https://www.piwheels.org/simple/pysam/ 2023-09-23T11:18:20,925 Skipping link: not a file: https://pypi.org/simple/pysam/ 2023-09-23T11:18:20,947 Given no hashes to check 1 links for project 'pysam': discarding no candidates 2023-09-23T11:18:20,966 Collecting pysam==0.21.0 2023-09-23T11:18:20,968 Created temporary directory: /tmp/pip-unpack-0ux3ij9w 2023-09-23T11:18:21,106 Downloading pysam-0.21.0.tar.gz (4.1 MB) 2023-09-23T11:18:23,701 Added pysam==0.21.0 from https://files.pythonhosted.org/packages/16/1c/a4999d93d6fd7791349f0822e1674b39971fe30d3b99638209ae6de3dfc7/pysam-0.21.0.tar.gz to build tracker '/tmp/pip-build-tracker-3klu_h5m' 2023-09-23T11:18:23,709 Created temporary directory: /tmp/pip-build-env-r3eigeb3 2023-09-23T11:18:23,715 Installing build dependencies: started 2023-09-23T11:18:23,717 Running command pip subprocess to install build dependencies 2023-09-23T11:18:25,355 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-23T11:18:25,907 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-23T11:18:27,464 Collecting setuptools>=59.0 2023-09-23T11:18:27,465 Obtaining dependency information for setuptools>=59.0 from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-23T11:18:27,472 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-23T11:18:28,474 Collecting wheel 2023-09-23T11:18:28,495 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-23T11:18:29,980 Collecting Cython<3.0,>=0.29.30 2023-09-23T11:18:29,981 Obtaining dependency information for Cython<3.0,>=0.29.30 from https://files.pythonhosted.org/packages/3f/d6/9eed523aeaca42acbaa3e6d3850edae780dc7f8da9df1bf6a2ceb851839c/Cython-0.29.36-py2.py3-none-any.whl.metadata 2023-09-23T11:18:29,986 Using cached Cython-0.29.36-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-23T11:18:30,179 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-23T11:18:30,219 Using cached Cython-0.29.36-py2.py3-none-any.whl (988 kB) 2023-09-23T11:18:34,023 Installing collected packages: wheel, setuptools, Cython 2023-09-23T11:18:34,431 Creating /tmp/pip-build-env-r3eigeb3/overlay/local/bin 2023-09-23T11:18:34,433 changing mode of /tmp/pip-build-env-r3eigeb3/overlay/local/bin/wheel to 755 2023-09-23T11:18:41,619 changing mode of /tmp/pip-build-env-r3eigeb3/overlay/local/bin/cygdb to 755 2023-09-23T11:18:41,621 changing mode of /tmp/pip-build-env-r3eigeb3/overlay/local/bin/cython to 755 2023-09-23T11:18:41,623 changing mode of /tmp/pip-build-env-r3eigeb3/overlay/local/bin/cythonize to 755 2023-09-23T11:18:41,649 Successfully installed Cython-0.29.36 setuptools-68.2.2 wheel-0.41.2 2023-09-23T11:18:43,090 Installing build dependencies: finished with status 'done' 2023-09-23T11:18:43,093 Getting requirements to build wheel: started 2023-09-23T11:18:43,094 Running command Getting requirements to build wheel 2023-09-23T11:18:43,809 # pysam: cython is available - using cythonize if necessary 2023-09-23T11:18:43,809 # pysam: htslib mode is shared 2023-09-23T11:18:43,810 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2023-09-23T11:18:43,810 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc 2023-09-23T11:18:43,811 # pysam: (sysconfig) CFLAGS=-Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-23T11:18:43,812 # pysam: (sysconfig) LDFLAGS= -g -fwrapv -O2 2023-09-23T11:18:44,113 checking for gcc... arm-linux-gnueabihf-gcc 2023-09-23T11:18:44,440 checking whether the C compiler works... yes 2023-09-23T11:18:44,441 checking for C compiler default output file name... a.out 2023-09-23T11:18:44,829 checking for suffix of executables... 2023-09-23T11:18:45,035 checking whether we are cross compiling... no 2023-09-23T11:18:45,153 checking for suffix of object files... o 2023-09-23T11:18:45,252 checking whether we are using the GNU C compiler... yes 2023-09-23T11:18:45,541 checking whether arm-linux-gnueabihf-gcc accepts -g... yes 2023-09-23T11:18:45,677 checking for arm-linux-gnueabihf-gcc option to accept ISO C89... none needed 2023-09-23T11:18:45,901 checking for ranlib... ranlib 2023-09-23T11:18:45,914 checking for grep that handles long lines and -e... /usr/bin/grep 2023-09-23T11:18:46,031 checking for C compiler warning flags... -Wall 2023-09-23T11:18:46,041 configure: Default CFLAGS_ARM/X86: -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-23T11:18:46,101 checking whether C compiler accepts -mssse3 -mpopcnt -msse4.1... no 2023-09-23T11:18:46,169 checking whether C compiler accepts -mavx2... no 2023-09-23T11:18:46,246 checking whether C compiler accepts -mavx512f... no 2023-09-23T11:18:46,714 checking whether C compiler supports ARM Neon... no 2023-09-23T11:18:46,717 checking for pkg-config... /usr/bin/pkg-config 2023-09-23T11:18:46,724 checking pkg-config is at least version 0.9.0... yes 2023-09-23T11:18:46,726 checking for special C compiler options needed for large files... no 2023-09-23T11:18:46,941 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-09-23T11:18:46,963 checking shared library type for unknown-Linux... plain .so 2023-09-23T11:18:47,086 checking whether the linker supports versioned symbols... no 2023-09-23T11:18:47,512 checking whether the compiler accepts -fvisibility=hidden... yes 2023-09-23T11:18:47,630 checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -E 2023-09-23T11:18:47,746 checking for egrep... /usr/bin/grep -E 2023-09-23T11:18:48,427 checking for ANSI C header files... yes 2023-09-23T11:18:48,601 checking for sys/types.h... yes 2023-09-23T11:18:49,009 checking for sys/stat.h... yes 2023-09-23T11:18:49,188 checking for stdlib.h... yes 2023-09-23T11:18:49,333 checking for string.h... yes 2023-09-23T11:18:49,483 checking for memory.h... yes 2023-09-23T11:18:49,625 checking for strings.h... yes 2023-09-23T11:18:49,769 checking for inttypes.h... yes 2023-09-23T11:18:49,998 checking for stdint.h... yes 2023-09-23T11:18:50,177 checking for unistd.h... yes 2023-09-23T11:18:50,204 checking for stdlib.h... (cached) yes 2023-09-23T11:18:50,227 checking for unistd.h... (cached) yes 2023-09-23T11:18:50,538 checking for sys/param.h... yes 2023-09-23T11:18:51,333 checking for getpagesize... yes 2023-09-23T11:18:51,723 checking for working mmap... yes 2023-09-23T11:18:51,942 checking for gmtime_r... yes 2023-09-23T11:18:52,236 checking for fsync... yes 2023-09-23T11:18:52,452 checking for drand48... yes 2023-09-23T11:18:52,679 checking for srand48_deterministic... no 2023-09-23T11:18:52,885 checking whether fdatasync is declared... yes 2023-09-23T11:18:53,112 checking for fdatasync... yes 2023-09-23T11:18:53,528 checking for library containing log... -lm 2023-09-23T11:18:53,644 checking for zlib.h... yes 2023-09-23T11:18:53,882 checking for inflate in -lz... yes 2023-09-23T11:18:54,069 checking for library containing recv... none required 2023-09-23T11:18:54,159 checking for bzlib.h... yes 2023-09-23T11:18:54,345 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-09-23T11:18:55,010 checking for lzma.h... yes 2023-09-23T11:18:55,201 checking for lzma_easy_buffer_encode in -llzma... yes 2023-09-23T11:18:55,207 checking whether htscodecs files are present... yes 2023-09-23T11:18:55,293 checking for libdeflate.h... yes 2023-09-23T11:18:55,730 checking for libdeflate_deflate_compress in -ldeflate... yes 2023-09-23T11:18:56,467 checking for curl/curl.h... yes 2023-09-23T11:18:56,956 checking for curl_easy_pause in -lcurl... yes 2023-09-23T11:18:57,420 checking for CCHmac... no 2023-09-23T11:18:58,025 checking for library containing HMAC... -lcrypto 2023-09-23T11:18:58,220 checking for library containing regcomp... none required 2023-09-23T11:18:58,573 checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes 2023-09-23T11:18:58,925 configure: creating ./config.status 2023-09-23T11:18:59,219 config.status: creating config.mk 2023-09-23T11:18:59,260 config.status: creating htslib.pc.tmp 2023-09-23T11:18:59,304 config.status: creating config.h 2023-09-23T11:18:59,336 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-09-23T11:18:59,882 # pysam: htslib configure options: --enable-libcurl 2023-09-23T11:18:59,882 # pysam: htslib_config HTS_CFLAGS_AVX2= 2023-09-23T11:18:59,883 # pysam: htslib_config HTS_CFLAGS_AVX512= 2023-09-23T11:18:59,884 # pysam: htslib_config HTS_CFLAGS_SSE4= 2023-09-23T11:18:59,884 # pysam: htslib_config HTS_HAVE_NEON= 2023-09-23T11:18:59,885 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o 2023-09-23T11:18:59,886 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2023-09-23T11:18:59,886 # pysam: htslib_config PLATFORM=default 2023-09-23T11:18:59,887 # pysam: config_option: ENABLE_GCS=1 2023-09-23T11:18:59,887 # pysam: config_option: ENABLE_PLUGINS=0 2023-09-23T11:18:59,888 # pysam: config_option: ENABLE_S3=1 2023-09-23T11:18:59,888 # pysam: config_option: HAVE_COMMONCRYPTO=0 2023-09-23T11:18:59,889 # pysam: config_option: HAVE_HMAC=1 2023-09-23T11:18:59,890 # pysam: config_option: HAVE_LIBBZ2=1 2023-09-23T11:18:59,890 # pysam: config_option: HAVE_LIBCURL=1 2023-09-23T11:18:59,890 # pysam: config_option: HAVE_LIBDEFLATE=1 2023-09-23T11:18:59,891 # pysam: config_option: HAVE_LIBLZMA=1 2023-09-23T11:18:59,891 # pysam: config_option: HAVE_MMAP=1 2023-09-23T11:18:59,892 running egg_info 2023-09-23T11:18:59,892 writing pysam.egg-info/PKG-INFO 2023-09-23T11:18:59,893 writing dependency_links to pysam.egg-info/dependency_links.txt 2023-09-23T11:18:59,893 writing requirements to pysam.egg-info/requires.txt 2023-09-23T11:18:59,894 writing top-level names to pysam.egg-info/top_level.txt 2023-09-23T11:18:59,932 reading manifest file 'pysam.egg-info/SOURCES.txt' 2023-09-23T11:18:59,955 reading manifest template 'MANIFEST.in' 2023-09-23T11:18:59,957 warning: no files found matching 'KNOWN_BUGS' 2023-09-23T11:18:59,957 warning: no files found matching 'THANKS' 2023-09-23T11:18:59,965 no previously-included directories found matching 'tests/' 2023-09-23T11:19:00,086 adding license file 'COPYING' 2023-09-23T11:19:00,087 adding license file 'AUTHORS' 2023-09-23T11:19:00,109 writing manifest file 'pysam.egg-info/SOURCES.txt' 2023-09-23T11:19:00,233 Getting requirements to build wheel: finished with status 'done' 2023-09-23T11:19:00,242 Created temporary directory: /tmp/pip-modern-metadata-9d1_ed4z 2023-09-23T11:19:00,244 Preparing metadata (pyproject.toml): started 2023-09-23T11:19:00,245 Running command Preparing metadata (pyproject.toml) 2023-09-23T11:19:00,896 # pysam: cython is available - using cythonize if necessary 2023-09-23T11:19:00,896 # pysam: htslib mode is shared 2023-09-23T11:19:00,896 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2023-09-23T11:19:00,897 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc 2023-09-23T11:19:00,897 # pysam: (sysconfig) CFLAGS=-Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-23T11:19:00,898 # pysam: (sysconfig) LDFLAGS= -g -fwrapv -O2 2023-09-23T11:19:01,478 checking for gcc... arm-linux-gnueabihf-gcc 2023-09-23T11:19:01,761 checking whether the C compiler works... yes 2023-09-23T11:19:01,763 checking for C compiler default output file name... a.out 2023-09-23T11:19:02,651 checking for suffix of executables... 2023-09-23T11:19:02,858 checking whether we are cross compiling... no 2023-09-23T11:19:03,521 checking for suffix of object files... o 2023-09-23T11:19:04,946 checking whether we are using the GNU C compiler... yes 2023-09-23T11:19:05,031 checking whether arm-linux-gnueabihf-gcc accepts -g... yes 2023-09-23T11:19:05,382 checking for arm-linux-gnueabihf-gcc option to accept ISO C89... none needed 2023-09-23T11:19:05,385 checking for ranlib... ranlib 2023-09-23T11:19:05,393 checking for grep that handles long lines and -e... /usr/bin/grep 2023-09-23T11:19:05,468 checking for C compiler warning flags... -Wall 2023-09-23T11:19:05,478 configure: Default CFLAGS_ARM/X86: -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-23T11:19:05,535 checking whether C compiler accepts -mssse3 -mpopcnt -msse4.1... no 2023-09-23T11:19:05,583 checking whether C compiler accepts -mavx2... no 2023-09-23T11:19:05,636 checking whether C compiler accepts -mavx512f... no 2023-09-23T11:19:06,139 checking whether C compiler supports ARM Neon... no 2023-09-23T11:19:06,142 checking for pkg-config... /usr/bin/pkg-config 2023-09-23T11:19:06,147 checking pkg-config is at least version 0.9.0... yes 2023-09-23T11:19:06,149 checking for special C compiler options needed for large files... no 2023-09-23T11:19:06,470 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-09-23T11:19:06,484 checking shared library type for unknown-Linux... plain .so 2023-09-23T11:19:06,604 checking whether the linker supports versioned symbols... no 2023-09-23T11:19:07,029 checking whether the compiler accepts -fvisibility=hidden... yes 2023-09-23T11:19:07,676 checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -E 2023-09-23T11:19:09,056 checking for egrep... /usr/bin/grep -E 2023-09-23T11:19:09,807 checking for ANSI C header files... yes 2023-09-23T11:19:10,181 checking for sys/types.h... yes 2023-09-23T11:19:10,487 checking for sys/stat.h... yes 2023-09-23T11:19:10,935 checking for stdlib.h... yes 2023-09-23T11:19:12,061 checking for string.h... yes 2023-09-23T11:19:12,417 checking for memory.h... yes 2023-09-23T11:19:12,628 checking for strings.h... yes 2023-09-23T11:19:12,783 checking for inttypes.h... yes 2023-09-23T11:19:12,932 checking for stdint.h... yes 2023-09-23T11:19:13,095 checking for unistd.h... yes 2023-09-23T11:19:13,120 checking for stdlib.h... (cached) yes 2023-09-23T11:19:13,142 checking for unistd.h... (cached) yes 2023-09-23T11:19:13,819 checking for sys/param.h... yes 2023-09-23T11:19:14,024 checking for getpagesize... yes 2023-09-23T11:19:14,642 checking for working mmap... yes 2023-09-23T11:19:14,847 checking for gmtime_r... yes 2023-09-23T11:19:15,543 checking for fsync... yes 2023-09-23T11:19:15,769 checking for drand48... yes 2023-09-23T11:19:16,035 checking for srand48_deterministic... no 2023-09-23T11:19:16,239 checking whether fdatasync is declared... yes 2023-09-23T11:19:16,429 checking for fdatasync... yes 2023-09-23T11:19:16,865 checking for library containing log... -lm 2023-09-23T11:19:16,979 checking for zlib.h... yes 2023-09-23T11:19:17,168 checking for inflate in -lz... yes 2023-09-23T11:19:17,355 checking for library containing recv... none required 2023-09-23T11:19:17,472 checking for bzlib.h... yes 2023-09-23T11:19:17,686 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-09-23T11:19:17,908 checking for lzma.h... yes 2023-09-23T11:19:18,103 checking for lzma_easy_buffer_encode in -llzma... yes 2023-09-23T11:19:18,108 checking whether htscodecs files are present... yes 2023-09-23T11:19:18,186 checking for libdeflate.h... yes 2023-09-23T11:19:18,386 checking for libdeflate_deflate_compress in -ldeflate... yes 2023-09-23T11:19:18,747 checking for curl/curl.h... yes 2023-09-23T11:19:19,108 checking for curl_easy_pause in -lcurl... yes 2023-09-23T11:19:19,349 checking for CCHmac... no 2023-09-23T11:19:19,950 checking for library containing HMAC... -lcrypto 2023-09-23T11:19:20,168 checking for library containing regcomp... none required 2023-09-23T11:19:20,295 checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes 2023-09-23T11:19:20,360 configure: creating ./config.status 2023-09-23T11:19:20,652 config.status: creating config.mk 2023-09-23T11:19:20,693 config.status: creating htslib.pc.tmp 2023-09-23T11:19:20,737 config.status: creating config.h 2023-09-23T11:19:20,757 config.status: config.h is unchanged 2023-09-23T11:19:20,763 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-09-23T11:19:21,267 # pysam: htslib configure options: --enable-libcurl 2023-09-23T11:19:21,267 # pysam: htslib_config HTS_CFLAGS_AVX2= 2023-09-23T11:19:21,268 # pysam: htslib_config HTS_CFLAGS_AVX512= 2023-09-23T11:19:21,269 # pysam: htslib_config HTS_CFLAGS_SSE4= 2023-09-23T11:19:21,269 # pysam: htslib_config HTS_HAVE_NEON= 2023-09-23T11:19:21,270 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o 2023-09-23T11:19:21,270 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2023-09-23T11:19:21,271 # pysam: htslib_config PLATFORM=default 2023-09-23T11:19:21,272 # pysam: config_option: ENABLE_GCS=1 2023-09-23T11:19:21,272 # pysam: config_option: ENABLE_PLUGINS=0 2023-09-23T11:19:21,273 # pysam: config_option: ENABLE_S3=1 2023-09-23T11:19:21,273 # pysam: config_option: HAVE_COMMONCRYPTO=0 2023-09-23T11:19:21,273 # pysam: config_option: HAVE_HMAC=1 2023-09-23T11:19:21,274 # pysam: config_option: HAVE_LIBBZ2=1 2023-09-23T11:19:21,274 # pysam: config_option: HAVE_LIBCURL=1 2023-09-23T11:19:21,275 # pysam: config_option: HAVE_LIBDEFLATE=1 2023-09-23T11:19:21,275 # pysam: config_option: HAVE_LIBLZMA=1 2023-09-23T11:19:21,276 # pysam: config_option: HAVE_MMAP=1 2023-09-23T11:19:21,276 running dist_info 2023-09-23T11:19:21,277 creating /tmp/pip-modern-metadata-9d1_ed4z/pysam.egg-info 2023-09-23T11:19:21,279 writing /tmp/pip-modern-metadata-9d1_ed4z/pysam.egg-info/PKG-INFO 2023-09-23T11:19:21,282 writing dependency_links to /tmp/pip-modern-metadata-9d1_ed4z/pysam.egg-info/dependency_links.txt 2023-09-23T11:19:21,284 writing requirements to /tmp/pip-modern-metadata-9d1_ed4z/pysam.egg-info/requires.txt 2023-09-23T11:19:21,285 writing top-level names to /tmp/pip-modern-metadata-9d1_ed4z/pysam.egg-info/top_level.txt 2023-09-23T11:19:21,286 writing manifest file '/tmp/pip-modern-metadata-9d1_ed4z/pysam.egg-info/SOURCES.txt' 2023-09-23T11:19:21,395 reading manifest file '/tmp/pip-modern-metadata-9d1_ed4z/pysam.egg-info/SOURCES.txt' 2023-09-23T11:19:21,398 reading manifest template 'MANIFEST.in' 2023-09-23T11:19:21,399 warning: no files found matching 'KNOWN_BUGS' 2023-09-23T11:19:21,400 warning: no files found matching 'THANKS' 2023-09-23T11:19:21,409 no previously-included directories found matching 'tests/' 2023-09-23T11:19:21,526 adding license file 'COPYING' 2023-09-23T11:19:21,527 adding license file 'AUTHORS' 2023-09-23T11:19:21,544 writing manifest file '/tmp/pip-modern-metadata-9d1_ed4z/pysam.egg-info/SOURCES.txt' 2023-09-23T11:19:21,545 creating '/tmp/pip-modern-metadata-9d1_ed4z/pysam-0.21.0.dist-info' 2023-09-23T11:19:21,723 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-23T11:19:21,728 Source in /tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 has version 0.21.0, which satisfies requirement pysam==0.21.0 from https://files.pythonhosted.org/packages/16/1c/a4999d93d6fd7791349f0822e1674b39971fe30d3b99638209ae6de3dfc7/pysam-0.21.0.tar.gz 2023-09-23T11:19:21,729 Removed pysam==0.21.0 from https://files.pythonhosted.org/packages/16/1c/a4999d93d6fd7791349f0822e1674b39971fe30d3b99638209ae6de3dfc7/pysam-0.21.0.tar.gz from build tracker '/tmp/pip-build-tracker-3klu_h5m' 2023-09-23T11:19:21,734 Created temporary directory: /tmp/pip-unpack-dqlxfw2b 2023-09-23T11:19:21,735 Created temporary directory: /tmp/pip-unpack-poco_o_w 2023-09-23T11:19:21,739 Building wheels for collected packages: pysam 2023-09-23T11:19:21,743 Created temporary directory: /tmp/pip-wheel-2tmo06k5 2023-09-23T11:19:21,744 Destination directory: /tmp/pip-wheel-2tmo06k5 2023-09-23T11:19:21,746 Building wheel for pysam (pyproject.toml): started 2023-09-23T11:19:21,747 Running command Building wheel for pysam (pyproject.toml) 2023-09-23T11:19:22,398 # pysam: cython is available - using cythonize if necessary 2023-09-23T11:19:22,399 # pysam: htslib mode is shared 2023-09-23T11:19:22,399 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2023-09-23T11:19:22,400 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc 2023-09-23T11:19:22,400 # pysam: (sysconfig) CFLAGS=-Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-23T11:19:22,401 # pysam: (sysconfig) LDFLAGS= -g -fwrapv -O2 2023-09-23T11:19:22,920 checking for gcc... arm-linux-gnueabihf-gcc 2023-09-23T11:19:23,216 checking whether the C compiler works... yes 2023-09-23T11:19:23,218 checking for C compiler default output file name... a.out 2023-09-23T11:19:23,386 checking for suffix of executables... 2023-09-23T11:19:23,588 checking whether we are cross compiling... no 2023-09-23T11:19:23,673 checking for suffix of object files... o 2023-09-23T11:19:23,751 checking whether we are using the GNU C compiler... yes 2023-09-23T11:19:23,825 checking whether arm-linux-gnueabihf-gcc accepts -g... yes 2023-09-23T11:19:23,978 checking for arm-linux-gnueabihf-gcc option to accept ISO C89... none needed 2023-09-23T11:19:23,982 checking for ranlib... ranlib 2023-09-23T11:19:23,994 checking for grep that handles long lines and -e... /usr/bin/grep 2023-09-23T11:19:24,102 checking for C compiler warning flags... -Wall 2023-09-23T11:19:24,116 configure: Default CFLAGS_ARM/X86: -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-23T11:19:24,176 checking whether C compiler accepts -mssse3 -mpopcnt -msse4.1... no 2023-09-23T11:19:24,224 checking whether C compiler accepts -mavx2... no 2023-09-23T11:19:24,276 checking whether C compiler accepts -mavx512f... no 2023-09-23T11:19:24,733 checking whether C compiler supports ARM Neon... no 2023-09-23T11:19:24,736 checking for pkg-config... /usr/bin/pkg-config 2023-09-23T11:19:24,741 checking pkg-config is at least version 0.9.0... yes 2023-09-23T11:19:24,743 checking for special C compiler options needed for large files... no 2023-09-23T11:19:24,933 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-09-23T11:19:24,953 checking shared library type for unknown-Linux... plain .so 2023-09-23T11:19:25,071 checking whether the linker supports versioned symbols... no 2023-09-23T11:19:25,466 checking whether the compiler accepts -fvisibility=hidden... yes 2023-09-23T11:19:25,601 checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -E 2023-09-23T11:19:25,773 checking for egrep... /usr/bin/grep -E 2023-09-23T11:19:26,293 checking for ANSI C header files... yes 2023-09-23T11:19:26,421 checking for sys/types.h... yes 2023-09-23T11:19:26,573 checking for sys/stat.h... yes 2023-09-23T11:19:26,773 checking for stdlib.h... yes 2023-09-23T11:19:26,921 checking for string.h... yes 2023-09-23T11:19:27,066 checking for memory.h... yes 2023-09-23T11:19:27,209 checking for strings.h... yes 2023-09-23T11:19:27,355 checking for inttypes.h... yes 2023-09-23T11:19:27,522 checking for stdint.h... yes 2023-09-23T11:19:27,690 checking for unistd.h... yes 2023-09-23T11:19:27,714 checking for stdlib.h... (cached) yes 2023-09-23T11:19:27,737 checking for unistd.h... (cached) yes 2023-09-23T11:19:27,915 checking for sys/param.h... yes 2023-09-23T11:19:28,113 checking for getpagesize... yes 2023-09-23T11:19:28,490 checking for working mmap... yes 2023-09-23T11:19:28,693 checking for gmtime_r... yes 2023-09-23T11:19:28,906 checking for fsync... yes 2023-09-23T11:19:29,125 checking for drand48... yes 2023-09-23T11:19:29,374 checking for srand48_deterministic... no 2023-09-23T11:19:30,038 checking whether fdatasync is declared... yes 2023-09-23T11:19:30,226 checking for fdatasync... yes 2023-09-23T11:19:30,640 checking for library containing log... -lm 2023-09-23T11:19:30,773 checking for zlib.h... yes 2023-09-23T11:19:30,963 checking for inflate in -lz... yes 2023-09-23T11:19:31,153 checking for library containing recv... none required 2023-09-23T11:19:31,241 checking for bzlib.h... yes 2023-09-23T11:19:31,425 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-09-23T11:19:31,654 checking for lzma.h... yes 2023-09-23T11:19:31,846 checking for lzma_easy_buffer_encode in -llzma... yes 2023-09-23T11:19:31,852 checking whether htscodecs files are present... yes 2023-09-23T11:19:31,930 checking for libdeflate.h... yes 2023-09-23T11:19:32,114 checking for libdeflate_deflate_compress in -ldeflate... yes 2023-09-23T11:19:32,268 checking for curl/curl.h... yes 2023-09-23T11:19:32,895 checking for curl_easy_pause in -lcurl... yes 2023-09-23T11:19:33,108 checking for CCHmac... no 2023-09-23T11:19:33,706 checking for library containing HMAC... -lcrypto 2023-09-23T11:19:33,899 checking for library containing regcomp... none required 2023-09-23T11:19:34,055 checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes 2023-09-23T11:19:34,125 configure: creating ./config.status 2023-09-23T11:19:34,415 config.status: creating config.mk 2023-09-23T11:19:34,454 config.status: creating htslib.pc.tmp 2023-09-23T11:19:34,496 config.status: creating config.h 2023-09-23T11:19:34,516 config.status: config.h is unchanged 2023-09-23T11:19:34,521 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-09-23T11:19:34,994 # pysam: htslib configure options: --enable-libcurl 2023-09-23T11:19:34,994 # pysam: htslib_config HTS_CFLAGS_AVX2= 2023-09-23T11:19:34,995 # pysam: htslib_config HTS_CFLAGS_AVX512= 2023-09-23T11:19:34,995 # pysam: htslib_config HTS_CFLAGS_SSE4= 2023-09-23T11:19:34,996 # pysam: htslib_config HTS_HAVE_NEON= 2023-09-23T11:19:34,996 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o 2023-09-23T11:19:34,997 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2023-09-23T11:19:34,997 # pysam: htslib_config PLATFORM=default 2023-09-23T11:19:34,998 # pysam: config_option: ENABLE_GCS=1 2023-09-23T11:19:34,999 # pysam: config_option: ENABLE_PLUGINS=0 2023-09-23T11:19:34,999 # pysam: config_option: ENABLE_S3=1 2023-09-23T11:19:35,000 # pysam: config_option: HAVE_COMMONCRYPTO=0 2023-09-23T11:19:35,001 # pysam: config_option: HAVE_HMAC=1 2023-09-23T11:19:35,001 # pysam: config_option: HAVE_LIBBZ2=1 2023-09-23T11:19:35,002 # pysam: config_option: HAVE_LIBCURL=1 2023-09-23T11:19:35,002 # pysam: config_option: HAVE_LIBDEFLATE=1 2023-09-23T11:19:35,003 # pysam: config_option: HAVE_LIBLZMA=1 2023-09-23T11:19:35,003 # pysam: config_option: HAVE_MMAP=1 2023-09-23T11:19:35,004 running bdist_wheel 2023-09-23T11:19:35,010 running build 2023-09-23T11:19:35,010 running build_py 2023-09-23T11:19:35,016 creating build 2023-09-23T11:19:35,016 creating build/lib.linux-armv7l-cpython-311 2023-09-23T11:19:35,017 creating build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,019 copying pysam/config.py -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,020 copying pysam/utils.py -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,022 copying pysam/__init__.py -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,024 copying pysam/version.py -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,026 copying pysam/bcftools.py -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,027 copying pysam/samtools.py -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,030 copying pysam/Pileup.py -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,033 creating build/lib.linux-armv7l-cpython-311/pysam/include 2023-09-23T11:19:35,034 copying pysam/include/__init__.py -> build/lib.linux-armv7l-cpython-311/pysam/include 2023-09-23T11:19:35,038 running egg_info 2023-09-23T11:19:35,043 writing pysam.egg-info/PKG-INFO 2023-09-23T11:19:35,046 writing dependency_links to pysam.egg-info/dependency_links.txt 2023-09-23T11:19:35,047 writing requirements to pysam.egg-info/requires.txt 2023-09-23T11:19:35,048 writing top-level names to pysam.egg-info/top_level.txt 2023-09-23T11:19:35,115 reading manifest file 'pysam.egg-info/SOURCES.txt' 2023-09-23T11:19:35,155 reading manifest template 'MANIFEST.in' 2023-09-23T11:19:35,156 warning: no files found matching 'KNOWN_BUGS' 2023-09-23T11:19:35,157 warning: no files found matching 'THANKS' 2023-09-23T11:19:35,164 no previously-included directories found matching 'tests/' 2023-09-23T11:19:35,275 adding license file 'COPYING' 2023-09-23T11:19:35,275 adding license file 'AUTHORS' 2023-09-23T11:19:35,298 writing manifest file 'pysam.egg-info/SOURCES.txt' 2023-09-23T11:19:35,303 /tmp/pip-build-env-r3eigeb3/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pysam.include.htslib.cram' is absent from the `packages` configuration. 2023-09-23T11:19:35,304 !! 2023-09-23T11:19:35,306 ******************************************************************************** 2023-09-23T11:19:35,307 ############################ 2023-09-23T11:19:35,307 # Package would be ignored # 2023-09-23T11:19:35,308 ############################ 2023-09-23T11:19:35,309 Python recognizes 'pysam.include.htslib.cram' as an importable package[^1], 2023-09-23T11:19:35,309 but it is absent from setuptools' `packages` configuration. 2023-09-23T11:19:35,310 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-23T11:19:35,311 package, please make sure that 'pysam.include.htslib.cram' is explicitly added 2023-09-23T11:19:35,311 to the `packages` configuration field. 2023-09-23T11:19:35,312 Alternatively, you can also rely on setuptools' discovery methods 2023-09-23T11:19:35,313 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-23T11:19:35,313 instead of `find_packages(...)`/`find:`). 2023-09-23T11:19:35,316 You can read more about "package discovery" on setuptools documentation page: 2023-09-23T11:19:35,317 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-23T11:19:35,320 If you don't want 'pysam.include.htslib.cram' to be distributed and are 2023-09-23T11:19:35,320 already explicitly excluding 'pysam.include.htslib.cram' via 2023-09-23T11:19:35,321 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-23T11:19:35,321 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-23T11:19:35,322 combination with a more fine grained `package-data` configuration. 2023-09-23T11:19:35,323 You can read more about "package data files" on setuptools documentation page: 2023-09-23T11:19:35,324 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-23T11:19:35,326 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-23T11:19:35,327 even if it does not contain any `.py` files. 2023-09-23T11:19:35,327 On the other hand, currently there is no concept of package data 2023-09-23T11:19:35,328 directory, all directories are treated like packages. 2023-09-23T11:19:35,328 ******************************************************************************** 2023-09-23T11:19:35,329 !! 2023-09-23T11:19:35,330 check.warn(importable) 2023-09-23T11:19:35,331 /tmp/pip-build-env-r3eigeb3/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pysam.include.htslib.htscodecs.htscodecs' is absent from the `packages` configuration. 2023-09-23T11:19:35,331 !! 2023-09-23T11:19:35,333 ******************************************************************************** 2023-09-23T11:19:35,333 ############################ 2023-09-23T11:19:35,333 # Package would be ignored # 2023-09-23T11:19:35,334 ############################ 2023-09-23T11:19:35,334 Python recognizes 'pysam.include.htslib.htscodecs.htscodecs' as an importable package[^1], 2023-09-23T11:19:35,335 but it is absent from setuptools' `packages` configuration. 2023-09-23T11:19:35,335 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-23T11:19:35,336 package, please make sure that 'pysam.include.htslib.htscodecs.htscodecs' is explicitly added 2023-09-23T11:19:35,336 to the `packages` configuration field. 2023-09-23T11:19:35,337 Alternatively, you can also rely on setuptools' discovery methods 2023-09-23T11:19:35,337 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-23T11:19:35,338 instead of `find_packages(...)`/`find:`). 2023-09-23T11:19:35,338 You can read more about "package discovery" on setuptools documentation page: 2023-09-23T11:19:35,339 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-23T11:19:35,340 If you don't want 'pysam.include.htslib.htscodecs.htscodecs' to be distributed and are 2023-09-23T11:19:35,341 already explicitly excluding 'pysam.include.htslib.htscodecs.htscodecs' via 2023-09-23T11:19:35,341 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-23T11:19:35,342 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-23T11:19:35,342 combination with a more fine grained `package-data` configuration. 2023-09-23T11:19:35,343 You can read more about "package data files" on setuptools documentation page: 2023-09-23T11:19:35,344 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-23T11:19:35,345 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-23T11:19:35,345 even if it does not contain any `.py` files. 2023-09-23T11:19:35,346 On the other hand, currently there is no concept of package data 2023-09-23T11:19:35,346 directory, all directories are treated like packages. 2023-09-23T11:19:35,347 ******************************************************************************** 2023-09-23T11:19:35,348 !! 2023-09-23T11:19:35,348 check.warn(importable) 2023-09-23T11:19:35,349 /tmp/pip-build-env-r3eigeb3/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pysam.include.htslib.m4' is absent from the `packages` configuration. 2023-09-23T11:19:35,349 !! 2023-09-23T11:19:35,350 ******************************************************************************** 2023-09-23T11:19:35,351 ############################ 2023-09-23T11:19:35,351 # Package would be ignored # 2023-09-23T11:19:35,352 ############################ 2023-09-23T11:19:35,352 Python recognizes 'pysam.include.htslib.m4' as an importable package[^1], 2023-09-23T11:19:35,353 but it is absent from setuptools' `packages` configuration. 2023-09-23T11:19:35,354 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-23T11:19:35,354 package, please make sure that 'pysam.include.htslib.m4' is explicitly added 2023-09-23T11:19:35,355 to the `packages` configuration field. 2023-09-23T11:19:35,356 Alternatively, you can also rely on setuptools' discovery methods 2023-09-23T11:19:35,356 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-23T11:19:35,357 instead of `find_packages(...)`/`find:`). 2023-09-23T11:19:35,358 You can read more about "package discovery" on setuptools documentation page: 2023-09-23T11:19:35,359 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-23T11:19:35,360 If you don't want 'pysam.include.htslib.m4' to be distributed and are 2023-09-23T11:19:35,360 already explicitly excluding 'pysam.include.htslib.m4' via 2023-09-23T11:19:35,361 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-23T11:19:35,361 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-23T11:19:35,362 combination with a more fine grained `package-data` configuration. 2023-09-23T11:19:35,363 You can read more about "package data files" on setuptools documentation page: 2023-09-23T11:19:35,364 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-23T11:19:35,365 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-23T11:19:35,365 even if it does not contain any `.py` files. 2023-09-23T11:19:35,366 On the other hand, currently there is no concept of package data 2023-09-23T11:19:35,366 directory, all directories are treated like packages. 2023-09-23T11:19:35,367 ******************************************************************************** 2023-09-23T11:19:35,368 !! 2023-09-23T11:19:35,368 check.warn(importable) 2023-09-23T11:19:35,369 /tmp/pip-build-env-r3eigeb3/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pysam.include.htslib.os' is absent from the `packages` configuration. 2023-09-23T11:19:35,369 !! 2023-09-23T11:19:35,370 ******************************************************************************** 2023-09-23T11:19:35,371 ############################ 2023-09-23T11:19:35,371 # Package would be ignored # 2023-09-23T11:19:35,372 ############################ 2023-09-23T11:19:35,376 Python recognizes 'pysam.include.htslib.os' as an importable package[^1], 2023-09-23T11:19:35,399 but it is absent from setuptools' `packages` configuration. 2023-09-23T11:19:35,417 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-23T11:19:35,419 package, please make sure that 'pysam.include.htslib.os' is explicitly added 2023-09-23T11:19:35,419 to the `packages` configuration field. 2023-09-23T11:19:35,420 Alternatively, you can also rely on setuptools' discovery methods 2023-09-23T11:19:35,421 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-23T11:19:35,421 instead of `find_packages(...)`/`find:`). 2023-09-23T11:19:35,423 You can read more about "package discovery" on setuptools documentation page: 2023-09-23T11:19:35,423 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-23T11:19:35,424 If you don't want 'pysam.include.htslib.os' to be distributed and are 2023-09-23T11:19:35,425 already explicitly excluding 'pysam.include.htslib.os' via 2023-09-23T11:19:35,426 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-23T11:19:35,426 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-23T11:19:35,427 combination with a more fine grained `package-data` configuration. 2023-09-23T11:19:35,428 You can read more about "package data files" on setuptools documentation page: 2023-09-23T11:19:35,429 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-23T11:19:35,432 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-23T11:19:35,433 even if it does not contain any `.py` files. 2023-09-23T11:19:35,433 On the other hand, currently there is no concept of package data 2023-09-23T11:19:35,434 directory, all directories are treated like packages. 2023-09-23T11:19:35,434 ******************************************************************************** 2023-09-23T11:19:35,435 !! 2023-09-23T11:19:35,436 check.warn(importable) 2023-09-23T11:19:35,436 /tmp/pip-build-env-r3eigeb3/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. 2023-09-23T11:19:35,437 !! 2023-09-23T11:19:35,437 ******************************************************************************** 2023-09-23T11:19:35,438 ############################ 2023-09-23T11:19:35,438 # Package would be ignored # 2023-09-23T11:19:35,439 ############################ 2023-09-23T11:19:35,439 Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], 2023-09-23T11:19:35,440 but it is absent from setuptools' `packages` configuration. 2023-09-23T11:19:35,441 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-23T11:19:35,441 package, please make sure that 'pysam.include.samtools.lz4' is explicitly added 2023-09-23T11:19:35,442 to the `packages` configuration field. 2023-09-23T11:19:35,443 Alternatively, you can also rely on setuptools' discovery methods 2023-09-23T11:19:35,443 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-23T11:19:35,444 instead of `find_packages(...)`/`find:`). 2023-09-23T11:19:35,445 You can read more about "package discovery" on setuptools documentation page: 2023-09-23T11:19:35,458 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-23T11:19:35,476 If you don't want 'pysam.include.samtools.lz4' to be distributed and are 2023-09-23T11:19:35,477 already explicitly excluding 'pysam.include.samtools.lz4' via 2023-09-23T11:19:35,477 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-23T11:19:35,478 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-23T11:19:35,478 combination with a more fine grained `package-data` configuration. 2023-09-23T11:19:35,479 You can read more about "package data files" on setuptools documentation page: 2023-09-23T11:19:35,480 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-23T11:19:35,482 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-23T11:19:35,482 even if it does not contain any `.py` files. 2023-09-23T11:19:35,485 On the other hand, currently there is no concept of package data 2023-09-23T11:19:35,485 directory, all directories are treated like packages. 2023-09-23T11:19:35,486 ******************************************************************************** 2023-09-23T11:19:35,487 !! 2023-09-23T11:19:35,488 check.warn(importable) 2023-09-23T11:19:35,490 copying pysam/cbcftools_util.h -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,490 copying pysam/csamtools_util.h -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,491 copying pysam/htslib_util.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,491 copying pysam/htslib_util.h -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,492 copying pysam/libcalignedsegment.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,492 copying pysam/libcalignedsegment.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,493 copying pysam/libcalignedsegment.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,494 copying pysam/libcalignedsegment.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,494 copying pysam/libcalignmentfile.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,495 copying pysam/libcalignmentfile.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,495 copying pysam/libcalignmentfile.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,496 copying pysam/libcalignmentfile.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,496 copying pysam/libcbcf.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,560 copying pysam/libcbcf.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,563 copying pysam/libcbcf.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,565 copying pysam/libcbcf.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,570 copying pysam/libcbcftools.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,574 copying pysam/libcbcftools.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,576 copying pysam/libcbcftools.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,578 copying pysam/libcbcftools.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,580 copying pysam/libcbgzf.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,588 copying pysam/libcbgzf.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,590 copying pysam/libcbgzf.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,592 copying pysam/libcfaidx.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,604 copying pysam/libcfaidx.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,606 copying pysam/libcfaidx.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,608 copying pysam/libcfaidx.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,611 copying pysam/libchtslib.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,625 copying pysam/libchtslib.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,629 copying pysam/libchtslib.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,631 copying pysam/libchtslib.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,634 copying pysam/libcsamfile.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,640 copying pysam/libcsamfile.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,642 copying pysam/libcsamfile.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,644 copying pysam/libcsamfile.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,646 copying pysam/libcsamtools.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,651 copying pysam/libcsamtools.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,652 copying pysam/libcsamtools.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,654 copying pysam/libcsamtools.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,656 copying pysam/libctabix.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,674 copying pysam/libctabix.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,676 copying pysam/libctabix.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,679 copying pysam/libctabix.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,682 copying pysam/libctabixproxies.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,708 copying pysam/libctabixproxies.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,711 copying pysam/libctabixproxies.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,713 copying pysam/libctabixproxies.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,716 copying pysam/libcutils.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,727 copying pysam/libcutils.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,729 copying pysam/libcutils.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,731 copying pysam/libcutils.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,733 copying pysam/libcvcf.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,763 copying pysam/libcvcf.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,765 copying pysam/libcvcf.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,766 copying pysam/libcvcf.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,769 copying pysam/py.typed -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,771 copying pysam/pysam_stream.h -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,773 copying pysam/pysam_util.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,774 copying pysam/pysam_util.h -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,776 copying pysam/version.h -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,778 copying pysam/version.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-09-23T11:19:35,780 creating build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,781 copying samtools/LICENSE -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,783 copying samtools/README -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,786 copying samtools/amplicon_stats.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,790 copying samtools/amplicon_stats.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,793 copying samtools/bam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,795 copying samtools/bam.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,798 copying samtools/bam.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,800 copying samtools/bam2depth.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,803 copying samtools/bam2depth.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,806 copying samtools/bam_addrprg.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,808 copying samtools/bam_addrprg.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,811 copying samtools/bam_ampliconclip.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,814 copying samtools/bam_ampliconclip.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,817 copying samtools/bam_ampliconclip.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,819 copying samtools/bam_aux.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,822 copying samtools/bam_aux.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,825 copying samtools/bam_cat.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,828 copying samtools/bam_cat.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,831 copying samtools/bam_color.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,834 copying samtools/bam_color.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,836 copying samtools/bam_consensus.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,843 copying samtools/bam_consensus.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,848 copying samtools/bam_fastq.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,854 copying samtools/bam_fastq.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,858 copying samtools/bam_flags.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,861 copying samtools/bam_flags.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,863 copying samtools/bam_import.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,866 copying samtools/bam_import.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,870 copying samtools/bam_index.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,873 copying samtools/bam_index.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,877 copying samtools/bam_lpileup.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,879 copying samtools/bam_lpileup.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,882 copying samtools/bam_lpileup.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,883 copying samtools/bam_markdup.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,887 copying samtools/bam_markdup.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,890 copying samtools/bam_mate.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,894 copying samtools/bam_mate.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,896 copying samtools/bam_md.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,899 copying samtools/bam_md.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,902 copying samtools/bam_plbuf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,904 copying samtools/bam_plbuf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,906 copying samtools/bam_plbuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,908 copying samtools/bam_plcmd.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,911 copying samtools/bam_plcmd.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,914 copying samtools/bam_quickcheck.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,917 copying samtools/bam_quickcheck.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,919 copying samtools/bam_reheader.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,922 copying samtools/bam_reheader.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,924 copying samtools/bam_rmdup.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,927 copying samtools/bam_rmdup.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,929 copying samtools/bam_rmdupse.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,932 copying samtools/bam_rmdupse.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,934 copying samtools/bam_samples.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,937 copying samtools/bam_samples.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,940 copying samtools/bam_sort.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,944 copying samtools/bam_sort.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,948 copying samtools/bam_split.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,952 copying samtools/bam_split.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,954 copying samtools/bam_stat.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,957 copying samtools/bam_stat.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,960 copying samtools/bamshuf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,963 copying samtools/bamshuf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,965 copying samtools/bamtk.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,968 copying samtools/bamtk.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,970 copying samtools/bedcov.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,973 copying samtools/bedcov.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,975 copying samtools/bedidx.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,978 copying samtools/bedidx.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,981 copying samtools/bedidx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,983 copying samtools/consensus_pileup.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,986 copying samtools/consensus_pileup.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,988 copying samtools/consensus_pileup.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,990 copying samtools/coverage.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,994 copying samtools/coverage.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:35,997 copying samtools/cram_size.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,000 copying samtools/cram_size.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,003 copying samtools/cut_target.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,006 copying samtools/cut_target.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,010 copying samtools/dict.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,013 copying samtools/dict.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,016 copying samtools/faidx.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,018 copying samtools/faidx.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,024 copying samtools/padding.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,028 copying samtools/padding.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,034 copying samtools/phase.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,038 copying samtools/phase.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,041 copying samtools/reference.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,044 copying samtools/reference.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,046 copying samtools/reset.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,049 copying samtools/reset.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,052 copying samtools/sam_opts.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,054 copying samtools/sam_opts.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,057 copying samtools/sam_opts.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,060 copying samtools/sam_utils.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,062 copying samtools/sam_utils.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,072 copying samtools/sam_utils.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,147 copying samtools/sam_view.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,466 copying samtools/sam_view.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,472 copying samtools/sample.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,476 copying samtools/sample.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,480 copying samtools/sample.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,483 copying samtools/samtools.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,486 copying samtools/samtools.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,489 copying samtools/samtools.pysam.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,492 copying samtools/splaysort.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,496 copying samtools/stats.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,503 copying samtools/stats.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,511 copying samtools/stats_isize.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,515 copying samtools/stats_isize.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,519 copying samtools/stats_isize.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,523 copying samtools/tmp_file.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,527 copying samtools/tmp_file.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,531 copying samtools/tmp_file.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,535 copying samtools/version.sh -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,539 creating build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4 2023-09-23T11:19:36,540 copying samtools/lz4/LICENSE -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4 2023-09-23T11:19:36,544 copying samtools/lz4/lz4.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4 2023-09-23T11:19:36,550 copying samtools/lz4/lz4.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4 2023-09-23T11:19:36,556 copying samtools/lz4/lz4.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4 2023-09-23T11:19:36,562 copying samtools/config.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-09-23T11:19:36,566 creating build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,568 copying bcftools/HMM.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,573 copying bcftools/HMM.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,579 copying bcftools/HMM.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,583 copying bcftools/LICENSE -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,587 copying bcftools/README -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,591 copying bcftools/abuf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,595 copying bcftools/abuf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,600 copying bcftools/abuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,603 copying bcftools/bam2bcf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,609 copying bcftools/bam2bcf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,614 copying bcftools/bam2bcf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,618 copying bcftools/bam2bcf_iaux.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,623 copying bcftools/bam2bcf_iaux.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,626 copying bcftools/bam2bcf_indel.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,630 copying bcftools/bam2bcf_indel.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,634 copying bcftools/bam_sample.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,638 copying bcftools/bam_sample.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,642 copying bcftools/bam_sample.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,645 copying bcftools/bcftools.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,648 copying bcftools/bcftools.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,651 copying bcftools/bcftools.pysam.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,654 copying bcftools/bin.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,657 copying bcftools/bin.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,660 copying bcftools/bin.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,663 copying bcftools/call.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,667 copying bcftools/ccall.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,670 copying bcftools/ccall.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,674 copying bcftools/cigar_state.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,677 copying bcftools/cols.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,680 copying bcftools/cols.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,682 copying bcftools/cols.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,684 copying bcftools/consensus.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,688 copying bcftools/consensus.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,692 copying bcftools/convert.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,696 copying bcftools/convert.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,700 copying bcftools/convert.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,702 copying bcftools/csq.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,709 copying bcftools/csq.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,715 copying bcftools/dbuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,717 copying bcftools/dist.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,720 copying bcftools/dist.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,723 copying bcftools/dist.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,725 copying bcftools/em.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,728 copying bcftools/em.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,732 copying bcftools/extsort.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,735 copying bcftools/extsort.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,738 copying bcftools/extsort.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,740 copying bcftools/filter.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,745 copying bcftools/filter.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,750 copying bcftools/filter.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,752 copying bcftools/gvcf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,755 copying bcftools/gvcf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,757 copying bcftools/gvcf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,760 copying bcftools/hclust.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,763 copying bcftools/hclust.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,765 copying bcftools/hclust.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,768 copying bcftools/hex.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,770 copying bcftools/khash_str2str.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,773 copying bcftools/kheap.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,775 copying bcftools/kmin.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,778 copying bcftools/kmin.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,781 copying bcftools/kmin.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,783 copying bcftools/main.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,786 copying bcftools/main.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,788 copying bcftools/mcall.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,792 copying bcftools/mcall.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,795 copying bcftools/mpileup.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,799 copying bcftools/mpileup.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,803 copying bcftools/mw.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,807 copying bcftools/ploidy.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,809 copying bcftools/ploidy.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,812 copying bcftools/ploidy.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,815 copying bcftools/prob1.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,818 copying bcftools/prob1.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,821 copying bcftools/prob1.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,824 copying bcftools/rbuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,826 copying bcftools/read_consensus.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,830 copying bcftools/read_consensus.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,833 copying bcftools/read_consensus.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,835 copying bcftools/regidx.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,838 copying bcftools/regidx.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,841 copying bcftools/regidx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,844 copying bcftools/reheader.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,847 copying bcftools/reheader.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,850 copying bcftools/smpl_ilist.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,853 copying bcftools/smpl_ilist.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,855 copying bcftools/smpl_ilist.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,858 copying bcftools/str_finder.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,860 copying bcftools/str_finder.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,863 copying bcftools/str_finder.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,865 copying bcftools/tabix.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,867 copying bcftools/tabix.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,870 copying bcftools/tsv2vcf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,872 copying bcftools/tsv2vcf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,875 copying bcftools/tsv2vcf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,877 copying bcftools/utlist.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,880 copying bcftools/variantkey.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,883 copying bcftools/vcfannotate.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,888 copying bcftools/vcfannotate.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,893 copying bcftools/vcfbuf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,896 copying bcftools/vcfbuf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,899 copying bcftools/vcfbuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,901 copying bcftools/vcfcall.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,905 copying bcftools/vcfcall.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,909 copying bcftools/vcfcnv.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,913 copying bcftools/vcfcnv.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,916 copying bcftools/vcfconcat.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,919 copying bcftools/vcfconcat.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,923 copying bcftools/vcfconvert.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,927 copying bcftools/vcfconvert.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,933 copying bcftools/vcffilter.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,937 copying bcftools/vcffilter.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,940 copying bcftools/vcfgtcheck.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,944 copying bcftools/vcfgtcheck.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,948 copying bcftools/vcfhead.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,951 copying bcftools/vcfhead.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,954 copying bcftools/vcfindex.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,957 copying bcftools/vcfindex.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,960 copying bcftools/vcfisec.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,963 copying bcftools/vcfisec.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,968 copying bcftools/vcfmerge.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,978 copying bcftools/vcfmerge.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,984 copying bcftools/vcfnorm.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:36,988 copying bcftools/vcfnorm.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,042 copying bcftools/vcfplugin.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,045 copying bcftools/vcfplugin.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,048 copying bcftools/vcfquery.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,051 copying bcftools/vcfquery.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,055 copying bcftools/vcfroh.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,058 copying bcftools/vcfroh.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,062 copying bcftools/vcfsom.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,065 copying bcftools/vcfsom.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,068 copying bcftools/vcfsort.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,071 copying bcftools/vcfsort.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,074 copying bcftools/vcfstats.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,079 copying bcftools/vcfstats.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,083 copying bcftools/vcfview.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,086 copying bcftools/vcfview.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,089 copying bcftools/vcmp.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,091 copying bcftools/vcmp.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,094 copying bcftools/vcmp.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,096 copying bcftools/version.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,098 copying bcftools/version.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,101 copying bcftools/version.sh -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,103 copying bcftools/config.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-09-23T11:19:37,105 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,106 copying htslib/LICENSE -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,109 copying htslib/Makefile -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,112 copying htslib/README -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,115 copying htslib/bcf_sr_sort.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,118 copying htslib/bcf_sr_sort.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,120 copying htslib/bgzf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,124 copying htslib/bgzip.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,127 copying htslib/builddir_vars.mk.in -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,130 copying htslib/config.h.in -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,132 copying htslib/config.mk.in -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,134 copying htslib/configure -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,140 copying htslib/configure.ac -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,143 copying htslib/errmod.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,145 copying htslib/faidx.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,148 copying htslib/header.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,152 copying htslib/header.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,155 copying htslib/hfile.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,158 copying htslib/hfile_gcs.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,161 copying htslib/hfile_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,164 copying htslib/hfile_libcurl.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,168 copying htslib/hfile_s3.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,171 copying htslib/hfile_s3_write.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,174 copying htslib/hts.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,180 copying htslib/hts_expr.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,183 copying htslib/hts_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,186 copying htslib/hts_os.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,188 copying htslib/hts_time_funcs.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,191 copying htslib/htscodecs_bundled.mk -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,194 copying htslib/htscodecs_external.mk -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,196 copying htslib/htsfile.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,199 copying htslib/htslib.mk -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,202 copying htslib/htslib.pc.in -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,204 copying htslib/htslib_vars.mk -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,206 copying htslib/kfunc.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,209 copying htslib/kstring.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,212 copying htslib/md5.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,215 copying htslib/multipart.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,218 copying htslib/plugin.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,221 copying htslib/probaln.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,224 copying htslib/realn.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,227 copying htslib/regidx.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,230 copying htslib/region.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,233 copying htslib/sam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,240 copying htslib/sam_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,242 copying htslib/synced_bcf_reader.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,246 copying htslib/tabix.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,249 copying htslib/tbx.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,252 copying htslib/textutils.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,255 copying htslib/textutils_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,258 copying htslib/thread_pool.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,261 copying htslib/thread_pool_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,264 copying htslib/vcf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,273 copying htslib/vcf_sweep.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,276 copying htslib/vcfutils.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,279 copying htslib/version.sh -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,281 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,283 copying htslib/cram/cram.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,285 copying htslib/cram/cram_codecs.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,290 copying htslib/cram/cram_codecs.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,293 copying htslib/cram/cram_decode.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,298 copying htslib/cram/cram_decode.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,301 copying htslib/cram/cram_encode.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,307 copying htslib/cram/cram_encode.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,309 copying htslib/cram/cram_external.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,312 copying htslib/cram/cram_index.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,315 copying htslib/cram/cram_index.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,317 copying htslib/cram/cram_io.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,322 copying htslib/cram/cram_io.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,325 copying htslib/cram/cram_samtools.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,327 copying htslib/cram/cram_stats.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,329 copying htslib/cram/cram_stats.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,331 copying htslib/cram/cram_structs.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,334 copying htslib/cram/mFILE.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,337 copying htslib/cram/mFILE.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,340 copying htslib/cram/misc.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,342 copying htslib/cram/open_trace_file.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,345 copying htslib/cram/open_trace_file.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,347 copying htslib/cram/os.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,350 copying htslib/cram/pooled_alloc.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,353 copying htslib/cram/pooled_alloc.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,355 copying htslib/cram/string_alloc.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,358 copying htslib/cram/string_alloc.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-09-23T11:19:37,360 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs 2023-09-23T11:19:37,361 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,362 copying htslib/htscodecs/htscodecs/arith_dynamic.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,366 copying htslib/htscodecs/htscodecs/arith_dynamic.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,368 copying htslib/htscodecs/htscodecs/c_range_coder.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,371 copying htslib/htscodecs/htscodecs/c_simple_model.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,374 copying htslib/htscodecs/htscodecs/fqzcomp_qual.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,377 copying htslib/htscodecs/htscodecs/fqzcomp_qual.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,380 copying htslib/htscodecs/htscodecs/htscodecs.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,382 copying htslib/htscodecs/htscodecs/htscodecs.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,384 copying htslib/htscodecs/htscodecs/htscodecs_endian.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,387 copying htslib/htscodecs/htscodecs/pack.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,389 copying htslib/htscodecs/htscodecs/pack.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,392 copying htslib/htscodecs/htscodecs/permute.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,395 copying htslib/htscodecs/htscodecs/pooled_alloc.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,397 copying htslib/htscodecs/htscodecs/rANS_byte.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,400 copying htslib/htscodecs/htscodecs/rANS_static.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,403 copying htslib/htscodecs/htscodecs/rANS_static.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,406 copying htslib/htscodecs/htscodecs/rANS_static16_int.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,409 copying htslib/htscodecs/htscodecs/rANS_static32x16pr.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,412 copying htslib/htscodecs/htscodecs/rANS_static32x16pr.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,415 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,419 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,422 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,426 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,430 copying htslib/htscodecs/htscodecs/rANS_static4x16.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,432 copying htslib/htscodecs/htscodecs/rANS_static4x16pr.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,435 copying htslib/htscodecs/htscodecs/rANS_word.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,438 copying htslib/htscodecs/htscodecs/rle.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,441 copying htslib/htscodecs/htscodecs/rle.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,443 copying htslib/htscodecs/htscodecs/tokenise_name3.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,446 copying htslib/htscodecs/htscodecs/tokenise_name3.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,448 copying htslib/htscodecs/htscodecs/utils.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,451 copying htslib/htscodecs/htscodecs/utils.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,453 copying htslib/htscodecs/htscodecs/varint.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,456 copying htslib/htscodecs/htscodecs/varint2.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,459 copying htslib/htscodecs/htscodecs/version.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:19:37,461 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4 2023-09-23T11:19:37,461 copying htslib/m4/ax_check_compile_flag.m4 -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4 2023-09-23T11:19:37,464 copying htslib/m4/hts_hide_dynamic_syms.m4 -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4 2023-09-23T11:19:37,466 copying htslib/m4/hts_prog_cc_warnings.m4 -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4 2023-09-23T11:19:37,468 copying htslib/m4/pkg.m4 -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4 2023-09-23T11:19:37,471 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib/os 2023-09-23T11:19:37,472 copying htslib/os/lzma_stub.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/os 2023-09-23T11:19:37,474 copying htslib/os/rand.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/os 2023-09-23T11:19:37,476 copying htslib/config.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-09-23T11:19:37,478 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,479 copying htslib/htslib/bgzf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,482 copying htslib/htslib/cram.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,485 copying htslib/htslib/faidx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,488 copying htslib/htslib/hfile.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,491 copying htslib/htslib/hts.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,495 copying htslib/htslib/hts_defs.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,497 copying htslib/htslib/hts_endian.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,500 copying htslib/htslib/hts_expr.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,503 copying htslib/htslib/hts_log.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,505 copying htslib/htslib/hts_os.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,507 copying htslib/htslib/kbitset.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,509 copying htslib/htslib/kfunc.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,511 copying htslib/htslib/khash.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,514 copying htslib/htslib/khash_str2int.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,516 copying htslib/htslib/klist.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,519 copying htslib/htslib/knetfile.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,521 copying htslib/htslib/kroundup.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,523 copying htslib/htslib/kseq.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,526 copying htslib/htslib/ksort.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,528 copying htslib/htslib/kstring.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,531 copying htslib/htslib/regidx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,533 copying htslib/htslib/sam.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,537 copying htslib/htslib/synced_bcf_reader.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,540 copying htslib/htslib/tbx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,542 copying htslib/htslib/thread_pool.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,545 copying htslib/htslib/vcf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,549 copying htslib/htslib/vcf_sweep.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,551 copying htslib/htslib/vcfutils.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-09-23T11:19:37,557 running build_ext 2023-09-23T11:19:37,622 skipping 'pysam/libchtslib.c' Cython extension (up-to-date) 2023-09-23T11:19:37,622 skipping 'pysam/libcsamtools.c' Cython extension (up-to-date) 2023-09-23T11:19:37,623 skipping 'pysam/libcbcftools.c' Cython extension (up-to-date) 2023-09-23T11:19:37,624 skipping 'pysam/libcutils.c' Cython extension (up-to-date) 2023-09-23T11:19:37,624 skipping 'pysam/libcalignmentfile.c' Cython extension (up-to-date) 2023-09-23T11:19:37,625 skipping 'pysam/libcsamfile.c' Cython extension (up-to-date) 2023-09-23T11:19:37,625 skipping 'pysam/libcalignedsegment.c' Cython extension (up-to-date) 2023-09-23T11:19:37,626 skipping 'pysam/libctabix.c' Cython extension (up-to-date) 2023-09-23T11:19:37,627 skipping 'pysam/libcfaidx.c' Cython extension (up-to-date) 2023-09-23T11:19:37,627 skipping 'pysam/libcbcf.c' Cython extension (up-to-date) 2023-09-23T11:19:37,628 skipping 'pysam/libcbgzf.c' Cython extension (up-to-date) 2023-09-23T11:19:37,628 skipping 'pysam/libctabixproxies.c' Cython extension (up-to-date) 2023-09-23T11:19:37,629 skipping 'pysam/libcvcf.c' Cython extension (up-to-date) 2023-09-23T11:19:37,629 creating htslib/config_vars.h for 'pysam.libchtslib' extension 2023-09-23T11:19:37,630 building 'libhts.a' 2023-09-23T11:19:37,680 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kfunc.o kfunc.c 2023-09-23T11:19:38,142 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kstring.o kstring.c 2023-09-23T11:19:38,998 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bcf_sr_sort.o bcf_sr_sort.c 2023-09-23T11:19:41,570 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bgzf.o bgzf.c 2023-09-23T11:19:44,861 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o errmod.o errmod.c 2023-09-23T11:19:45,544 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o faidx.o faidx.c 2023-09-23T11:19:47,521 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o header.o header.c 2023-09-23T11:19:52,025 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile.o hfile.c 2023-09-23T11:19:53,747 echo '#define HTS_VERSION_TEXT "1.17"' > version.h 2023-09-23T11:19:53,753 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts.o hts.c 2023-09-23T11:20:02,330 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_expr.o hts_expr.c 2023-09-23T11:20:04,290 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_os.o hts_os.c 2023-09-23T11:20:04,400 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o md5.o md5.c 2023-09-23T11:20:05,046 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o multipart.o multipart.c 2023-09-23T11:20:05,815 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o probaln.o probaln.c 2023-09-23T11:20:06,557 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o realn.o realn.c 2023-09-23T11:20:07,482 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o regidx.o regidx.c 2023-09-23T11:20:09,004 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o region.o region.c 2023-09-23T11:20:09,657 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o sam.o sam.c 2023-09-23T11:20:23,793 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o synced_bcf_reader.o synced_bcf_reader.c 2023-09-23T11:20:26,516 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf_sweep.o vcf_sweep.c 2023-09-23T11:20:26,872 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o tbx.o tbx.c 2023-09-23T11:20:27,715 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o textutils.o textutils.c 2023-09-23T11:20:28,697 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o thread_pool.o thread_pool.c 2023-09-23T11:20:29,622 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf.o vcf.c 2023-09-23T11:20:44,349 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcfutils.o vcfutils.c 2023-09-23T11:20:47,606 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_codecs.o cram/cram_codecs.c 2023-09-23T11:20:53,201 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_decode.o cram/cram_decode.c 2023-09-23T11:20:59,506 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_encode.o cram/cram_encode.c 2023-09-23T11:21:07,877 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_external.o cram/cram_external.c 2023-09-23T11:21:09,032 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_index.o cram/cram_index.c 2023-09-23T11:21:10,372 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_io.o cram/cram_io.c 2023-09-23T11:21:18,109 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_stats.o cram/cram_stats.c 2023-09-23T11:21:18,847 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/mFILE.o cram/mFILE.c 2023-09-23T11:21:19,514 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/open_trace_file.o cram/open_trace_file.c 2023-09-23T11:21:20,041 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/pooled_alloc.o cram/pooled_alloc.c 2023-09-23T11:21:20,227 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/string_alloc.o cram/string_alloc.c 2023-09-23T11:21:20,427 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c 2023-09-23T11:21:24,203 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c 2023-09-23T11:21:28,233 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c 2023-09-23T11:21:28,300 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c 2023-09-23T11:21:29,102 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c 2023-09-23T11:21:33,984 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static32x16pr.c 2023-09-23T11:21:37,191 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rANS_static.c 2023-09-23T11:21:39,288 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rle.o htscodecs/htscodecs/rle.c 2023-09-23T11:21:39,767 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/tokenise_name3.c 2023-09-23T11:21:42,973 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/utils.o htscodecs/htscodecs/utils.c 2023-09-23T11:21:43,277 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_libcurl.o hfile_libcurl.c 2023-09-23T11:21:43,770 hfile_libcurl.c: In function ‘libcurl_open’: 2023-09-23T11:21:43,771 hfile_libcurl.c:1335:9: warning: ‘CURLINFO_CONTENT_LENGTH_DOWNLOAD’ is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 2023-09-23T11:21:43,771 1335 | if (curl_easy_getinfo(fp->easy, CURLINFO_CONTENT_LENGTH_DOWNLOAD, 2023-09-23T11:21:43,772 | ^~ 2023-09-23T11:21:43,772 In file included from hfile_libcurl.c:47: 2023-09-23T11:21:43,773 /usr/include/arm-linux-gnueabihf/curl/curl.h:2858:3: note: declared here 2023-09-23T11:21:43,773 2858 | CURLINFO_CONTENT_LENGTH_DOWNLOAD 2023-09-23T11:21:43,774 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-23T11:21:45,831 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_gcs.o hfile_gcs.c 2023-09-23T11:21:46,318 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_s3.o hfile_s3.c 2023-09-23T11:21:49,574 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_s3_write.o hfile_s3_write.c 2023-09-23T11:21:51,050 ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o 2023-09-23T11:21:51,380 ranlib libhts.a 2023-09-23T11:21:51,692 building 'pysam.libchtslib' extension 2023-09-23T11:21:51,693 creating build/temp.linux-armv7l-cpython-311 2023-09-23T11:21:51,693 creating build/temp.linux-armv7l-cpython-311/pysam 2023-09-23T11:21:51,694 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c pysam/htslib_util.c -o build/temp.linux-armv7l-cpython-311/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:21:52,007 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c pysam/libchtslib.c -o build/temp.linux-armv7l-cpython-311/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:07,387 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/htslib_util.o build/temp.linux-armv7l-cpython-311/pysam/libchtslib.o htslib/kfunc.o htslib/kstring.o htslib/bcf_sr_sort.o htslib/bgzf.o htslib/errmod.o htslib/faidx.o htslib/header.o htslib/hfile.o htslib/hts.o htslib/hts_expr.o htslib/hts_os.o htslib/md5.o htslib/multipart.o htslib/probaln.o htslib/realn.o htslib/regidx.o htslib/region.o htslib/sam.o htslib/synced_bcf_reader.o htslib/vcf_sweep.o htslib/tbx.o htslib/textutils.o htslib/thread_pool.o htslib/vcf.o htslib/vcfutils.o htslib/cram/cram_codecs.o htslib/cram/cram_decode.o htslib/cram/cram_encode.o htslib/cram/cram_external.o htslib/cram/cram_index.o htslib/cram/cram_io.o htslib/cram/cram_stats.o htslib/cram/mFILE.o htslib/cram/open_trace_file.o htslib/cram/pooled_alloc.o htslib/cram/string_alloc.o htslib/htscodecs/htscodecs/arith_dynamic.o htslib/htscodecs/htscodecs/fqzcomp_qual.o htslib/htscodecs/htscodecs/htscodecs.o htslib/htscodecs/htscodecs/pack.o htslib/htscodecs/htscodecs/rANS_static4x16pr.o htslib/htscodecs/htscodecs/rANS_static32x16pr.o htslib/htscodecs/htscodecs/rANS_static.o htslib/htscodecs/htscodecs/rle.o htslib/htscodecs/htscodecs/tokenise_name3.o htslib/htscodecs/htscodecs/utils.o htslib/hfile_libcurl.o htslib/hfile_gcs.o htslib/hfile_s3.o htslib/hfile_s3_write.o -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -o build/lib.linux-armv7l-cpython-311/pysam/libchtslib.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-09-23T11:22:08,206 creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension 2023-09-23T11:22:08,208 building 'pysam.libcsamtools' extension 2023-09-23T11:22:08,209 creating build/temp.linux-armv7l-cpython-311/samtools 2023-09-23T11:22:08,211 creating build/temp.linux-armv7l-cpython-311/samtools/lz4 2023-09-23T11:22:08,212 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c pysam/libcsamtools.c -o build/temp.linux-armv7l-cpython-311/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:09,264 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:13,445 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:14,025 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:16,571 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:17,308 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:19,292 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:19,516 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:20,301 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_color.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:20,590 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:23,952 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:25,553 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:25,794 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_import.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:26,799 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_index.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:27,259 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:27,880 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:32,854 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:34,451 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_md.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:35,539 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:35,749 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:38,223 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:38,582 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:39,402 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:40,910 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:42,137 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:42,978 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:52,295 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_split.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:53,642 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:54,449 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:56,742 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bamtk.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:57,236 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bedcov.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:22:58,349 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/bedidx.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:00,153 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:00,787 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/coverage.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:01,926 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/cram_size.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/cram_size.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:02,126 samtools/cram_size.c.pysam.c: In function ‘cram_size’: 2023-09-23T11:23:02,127 samtools/cram_size.c.pysam.c:563:20: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘off_t’ {aka ‘long int’} [-Wformat=] 2023-09-23T11:23:02,128 563 | fprintf(outfp, "Total file size %18"PRId64"\n", end); 2023-09-23T11:23:02,128 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ 2023-09-23T11:23:02,129 | | 2023-09-23T11:23:02,129 | off_t {aka long int} 2023-09-23T11:23:02,130 In file included from /tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib/htslib/hts.h:33, 2023-09-23T11:23:02,131 from /tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib/htslib/sam.h:33, 2023-09-23T11:23:02,131 from samtools/cram_size.c.pysam.c:39: 2023-09-23T11:23:02,132 /usr/include/inttypes.h:57:41: note: format string is defined here 2023-09-23T11:23:02,133 57 | # define PRId64 __PRI64_PREFIX "d" 2023-09-23T11:23:02,133 samtools/cram_size.c.pysam.c:564:20: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘off_t’ {aka ‘long int’} [-Wformat=] 2023-09-23T11:23:02,134 564 | fprintf(outfp, "Format overhead size %18"PRId64"\n", end - tot_size); 2023-09-23T11:23:02,135 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~ 2023-09-23T11:23:02,136 | | 2023-09-23T11:23:02,136 | off_t {aka long int} 2023-09-23T11:23:02,137 /usr/include/inttypes.h:57:41: note: format string is defined here 2023-09-23T11:23:02,137 57 | # define PRId64 __PRI64_PREFIX "d" 2023-09-23T11:23:03,609 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/cut_target.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:04,334 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/dict.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:05,381 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/faidx.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:06,002 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/lz4/lz4.c -o build/temp.linux-armv7l-cpython-311/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:12,197 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/padding.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:13,571 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/phase.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:16,965 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/reference.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:17,967 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/reset.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/reset.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:19,028 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:19,344 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:19,887 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/sam_view.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:22,993 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/sample.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:23,801 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/samtools.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:24,009 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/stats.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:29,217 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:29,865 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:30,390 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcsamtools.o build/temp.linux-armv7l-cpython-311/samtools/amplicon_stats.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam2depth.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_addrprg.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_aux.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_cat.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_color.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_consensus.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_fastq.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_flags.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_import.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_index.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_lpileup.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_markdup.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_mate.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_md.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_plbuf.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_plcmd.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_quickcheck.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_reheader.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_rmdup.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_rmdupse.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_samples.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_sort.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_split.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_stat.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bamshuf.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bamtk.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bedcov.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bedidx.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/consensus_pileup.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/coverage.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/cram_size.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/cut_target.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/dict.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/faidx.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/lz4/lz4.o build/temp.linux-armv7l-cpython-311/samtools/padding.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/phase.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/reference.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/reset.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/sam_opts.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/sam_utils.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/sam_view.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/sample.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/samtools.pysam.o build/temp.linux-armv7l-cpython-311/samtools/stats.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/stats_isize.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/tmp_file.c.pysam.o -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-09-23T11:23:31,157 building 'pysam.libcbcftools' extension 2023-09-23T11:23:31,158 creating build/temp.linux-armv7l-cpython-311/bcftools 2023-09-23T11:23:31,160 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/HMM.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:32,207 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/abuf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:35,019 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:37,556 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/bam2bcf_iaux.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_iaux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:39,234 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:41,740 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:43,686 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/bcftools.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:43,897 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/bin.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:44,216 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/ccall.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:44,942 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/cols.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:45,171 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:47,668 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/convert.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:23:53,911 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/csq.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:03,843 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/dist.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:04,115 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/em.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:04,727 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/extsort.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:05,293 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/filter.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:19,305 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:19,904 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/hclust.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:20,569 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/kmin.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:21,029 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/main.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:21,374 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/mcall.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:25,301 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:27,963 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:29,027 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/prob1.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:30,629 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/read_consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/read_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:32,519 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/regidx.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:33,963 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/reheader.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:37,208 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:37,675 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:38,108 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/tabix.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:38,474 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:38,850 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:48,423 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:49,839 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:53,768 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:55,921 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:24:58,599 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:02,232 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:03,801 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:06,903 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:07,268 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:07,956 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:09,737 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:12,236 bcftools/vcfmerge.c.pysam.c: In function ‘maux_init’: 2023-09-23T11:25:12,237 bcftools/vcfmerge.c.pysam.c:751:34: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-09-23T11:25:12,237 751 | ma->gvcf = (gvcf_aux_t*) calloc(ma->n,sizeof(gvcf_aux_t)); // -Walloc-size-larger-than gives a harmless warning caused by signed integer ma->n 2023-09-23T11:25:12,238 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-23T11:25:12,239 In file included from /tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib/htslib/kstring.h:30, 2023-09-23T11:25:12,239 from /tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib/htslib/hts.h:37, 2023-09-23T11:25:12,240 from /tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib/htslib/vcf.h:39, 2023-09-23T11:25:12,240 from bcftools/vcfmerge.c.pysam.c:35: 2023-09-23T11:25:12,241 /usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here 2023-09-23T11:25:12,241 556 | extern void *calloc (size_t __nmemb, size_t __size) 2023-09-23T11:25:12,242 | ^~~~~~ 2023-09-23T11:25:21,224 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:29,869 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:30,127 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:31,404 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:34,034 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:35,404 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:36,214 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:40,692 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:42,692 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:43,136 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c bcftools/version.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:43,488 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c pysam/libcbcftools.c -o build/temp.linux-armv7l-cpython-311/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:44,552 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/bcftools/HMM.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/abuf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_iaux.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bam_sample.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bcftools.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bin.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/ccall.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/cols.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/consensus.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/convert.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/csq.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/dist.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/em.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/extsort.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/filter.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/gvcf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/hclust.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/kmin.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/main.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/mcall.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/mpileup.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/ploidy.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/prob1.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/read_consensus.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/regidx.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/reheader.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/smpl_ilist.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/str_finder.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/tabix.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/tsv2vcf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfannotate.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfbuf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfcall.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfcnv.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfconcat.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfconvert.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcffilter.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfhead.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfindex.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfisec.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfmerge.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfnorm.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfplugin.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfquery.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfroh.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfsom.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfsort.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfstats.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfview.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcmp.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/version.c.pysam.o build/temp.linux-armv7l-cpython-311/pysam/libcbcftools.o -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-09-23T11:25:44,982 building 'pysam.libcutils' extension 2023-09-23T11:25:44,983 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c pysam/libcutils.c -o build/temp.linux-armv7l-cpython-311/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:57,025 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c pysam/pysam_util.c -o build/temp.linux-armv7l-cpython-311/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:25:57,174 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcutils.o build/temp.linux-armv7l-cpython-311/pysam/pysam_util.o -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcsamtools.cpython-311-arm-linux-gnueabihf -lcbcftools.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcutils.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-09-23T11:25:57,364 building 'pysam.libcalignmentfile' extension 2023-09-23T11:25:57,365 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c pysam/libcalignmentfile.c -o build/temp.linux-armv7l-cpython-311/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:26:02,158 pysam/libcalignmentfile.c: In function ‘__pyx_f_5pysam_17libcalignmentfile_20IteratorRowSelection_cnext’: 2023-09-23T11:26:02,187 pysam/libcalignmentfile.c:28658:16: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2023-09-23T11:26:02,188 28658 | (void)(bgzf_seek(hts_get_bgzfp(__pyx_v_self->__pyx_base.htsfile), __pyx_v_pos, 0)); 2023-09-23T11:26:02,189 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-23T11:26:02,388 pysam/libcalignmentfile.c: In function ‘__pyx_pf_5pysam_17libcalignmentfile_13AlignmentFile_6_open’: 2023-09-23T11:26:02,403 pysam/libcalignmentfile.c:14341:20: warning: ignoring return value of ‘sam_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2023-09-23T11:26:02,403 14341 | (void)(sam_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_hdr)); 2023-09-23T11:26:02,404 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-23T11:26:43,411 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcalignmentfile.o -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-09-23T11:26:43,646 building 'pysam.libcsamfile' extension 2023-09-23T11:26:43,647 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c pysam/libcsamfile.c -o build/temp.linux-armv7l-cpython-311/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:26:46,009 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcsamfile.o -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-09-23T11:26:46,179 building 'pysam.libcalignedsegment' extension 2023-09-23T11:26:46,180 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c pysam/libcalignedsegment.c -o build/temp.linux-armv7l-cpython-311/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:26:54,858 pysam/libcalignedsegment.c: In function ‘__pyx_pf_5pysam_18libcalignedsegment_14AlignedSegment_18fromstring’: 2023-09-23T11:26:54,873 pysam/libcalignedsegment.c:14415:10: warning: ignoring return value of ‘sam_parse1’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2023-09-23T11:26:54,874 14415 | (void)(sam_parse1((&__pyx_v_line), __pyx_v_dest->header->ptr, __pyx_v_dest->_delegate)); 2023-09-23T11:26:54,874 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-23T11:27:48,383 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcalignedsegment.o -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-09-23T11:27:48,669 building 'pysam.libctabix' extension 2023-09-23T11:27:48,670 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c pysam/libctabix.c -o build/temp.linux-armv7l-cpython-311/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:28:12,489 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libctabix.o -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libctabix.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-09-23T11:28:12,691 building 'pysam.libcfaidx' extension 2023-09-23T11:28:12,692 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c pysam/libcfaidx.c -o build/temp.linux-armv7l-cpython-311/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:28:27,571 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcfaidx.o -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-09-23T11:28:27,745 building 'pysam.libcbcf' extension 2023-09-23T11:28:27,745 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c pysam/libcbcf.c -o build/temp.linux-armv7l-cpython-311/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:28:38,299 pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_6close’: 2023-09-23T11:28:38,364 pysam/libcbcf.c:67371:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2023-09-23T11:28:38,365 67371 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr)); 2023-09-23T11:28:38,365 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-23T11:28:38,377 pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_4__dealloc__’: 2023-09-23T11:28:38,442 pysam/libcbcf.c:67096:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2023-09-23T11:28:38,443 67096 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr)); 2023-09-23T11:28:38,443 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-23T11:28:38,447 pysam/libcbcf.c: In function ‘__pyx_f_5pysam_7libcbcf_11VariantFile_write’: 2023-09-23T11:28:38,511 pysam/libcbcf.c:72230:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2023-09-23T11:28:38,512 72230 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr)); 2023-09-23T11:28:38,512 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-23T11:28:39,317 pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_13VariantHeader_20add_meta’: 2023-09-23T11:28:39,351 pysam/libcbcf.c:35394:11: warning: ignoring return value of ‘bcf_hrec_add_key’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2023-09-23T11:28:39,351 35394 | bcf_hrec_add_key(__pyx_v_hrec, __pyx_t_17, ((int)__pyx_t_18)); 2023-09-23T11:28:39,352 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-23T11:28:39,383 pysam/libcbcf.c:35420:11: warning: ignoring return value of ‘bcf_hrec_set_val’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2023-09-23T11:28:39,383 35420 | bcf_hrec_set_val(__pyx_v_hrec, (__pyx_v_hrec->nkeys - 1), __pyx_t_19, ((int)__pyx_t_18), __pyx_v_quoted); 2023-09-23T11:28:39,384 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-23T11:29:54,198 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcbcf.o -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcbcf.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-09-23T11:29:54,526 building 'pysam.libcbgzf' extension 2023-09-23T11:29:54,527 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c pysam/libcbgzf.c -o build/temp.linux-armv7l-cpython-311/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:30:00,193 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcbgzf.o -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-09-23T11:30:00,359 building 'pysam.libctabixproxies' extension 2023-09-23T11:30:00,359 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c pysam/libctabixproxies.c -o build/temp.linux-armv7l-cpython-311/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:30:20,902 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libctabixproxies.o -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-09-23T11:30:21,086 building 'pysam.libcvcf' extension 2023-09-23T11:30:21,087 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/htslib -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/samtools/lz4 -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/bcftools -I/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -I/usr/include/python3.11 -c pysam/libcvcf.c -o build/temp.linux-armv7l-cpython-311/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-09-23T11:31:01,042 pysam/libcvcf.c: In function ‘__pyx_pf_5pysam_7libcvcf_3VCF_32parse_data.constprop’: 2023-09-23T11:31:01,069 pysam/libcvcf.c:25833:15: warning: ‘__pyx_v_qual’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-23T11:31:01,070 25833 | __pyx_t_8 = PyFloat_FromDouble(__pyx_v_qual); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 873, __pyx_L1_error) 2023-09-23T11:31:01,071 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-23T11:31:01,092 pysam/libcvcf.c:20265:10: note: ‘__pyx_v_qual’ was declared here 2023-09-23T11:31:01,093 20265 | double __pyx_v_qual; 2023-09-23T11:31:01,093 | ^~~~~~~~~~~~ 2023-09-23T11:31:28,495 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcvcf.o -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945/pysam -L/tmp/pip-wheel-adhyfo3x/pysam_530e8eceb2c24676abc2c94830e8e945 -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcvcf.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-09-23T11:31:29,722 installing to build/bdist.linux-armv7l/wheel 2023-09-23T11:31:29,723 running install 2023-09-23T11:31:29,746 running install_lib 2023-09-23T11:31:29,751 creating build/bdist.linux-armv7l 2023-09-23T11:31:29,752 creating build/bdist.linux-armv7l/wheel 2023-09-23T11:31:29,755 creating build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:29,756 copying build/lib.linux-armv7l-cpython-311/pysam/libctabix.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:29,778 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcf.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:29,781 copying build/lib.linux-armv7l-cpython-311/pysam/version.h -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:29,783 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:29,784 copying build/lib.linux-armv7l-cpython-311/pysam/libcvcf.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:29,788 copying build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:29,802 copying build/lib.linux-armv7l-cpython-311/pysam/config.py -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:29,804 creating build/bdist.linux-armv7l/wheel/pysam/include 2023-09-23T11:31:29,808 creating build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,810 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/str_finder.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,813 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf_iaux.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,816 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/abuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,819 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfisec.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,822 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfsort.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,825 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/main.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,828 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcmp.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,830 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/hclust.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,832 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfisec.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,835 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,838 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/cols.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,841 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/cols.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,843 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/kmin.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,845 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfplugin.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,848 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfindex.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,851 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,854 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bin.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,856 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/dist.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,858 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/hclust.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,860 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/smpl_ilist.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,862 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcmp.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,865 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/ploidy.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,867 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/config.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,869 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/cigar_state.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,871 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/HMM.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,874 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/read_consensus.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,877 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfview.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,880 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfcall.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,884 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcffilter.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,887 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfbuf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,890 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfsort.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,893 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfnorm.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,897 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/README -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,899 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/consensus.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,902 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/str_finder.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,905 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/consensus.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,908 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam_sample.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,910 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf_indel.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,913 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/mcall.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,919 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/prob1.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,922 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcmp.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,924 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfbuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,926 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/HMM.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,929 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/prob1.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,932 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bcftools.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,934 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam_sample.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,937 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/version.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,939 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/ccall.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,942 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfcnv.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,945 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/version.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,948 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfconvert.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,951 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/extsort.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,953 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/rbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,955 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/convert.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,959 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfstats.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,963 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf_iaux.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,966 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/utlist.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,970 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/cols.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,971 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfsom.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,974 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfcnv.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,978 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/tabix.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,981 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/str_finder.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,983 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfconcat.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,987 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/reheader.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,990 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/hex.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,992 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/convert.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,996 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/tsv2vcf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:29,998 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/hclust.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,001 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfquery.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,004 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/filter.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,007 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfquery.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,010 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/dbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,012 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/filter.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,022 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/csq.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,028 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcffilter.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,031 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfhead.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,034 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/call.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,036 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/extsort.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,038 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,040 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/ccall.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,042 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/mpileup.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,046 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bcftools.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,048 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfconvert.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,051 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/regidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,053 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/tsv2vcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,055 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfstats.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,058 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/version.sh -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,060 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfgtcheck.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,064 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/variantkey.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,066 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf_indel.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,069 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/ploidy.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,071 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfmerge.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,075 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/csq.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,082 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/main.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,084 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/abuf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,087 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfindex.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,089 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/kheap.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,092 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/prob1.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,093 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/tsv2vcf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,095 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/gvcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,097 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/em.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,100 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfannotate.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,104 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/kmin.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,106 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/ploidy.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,108 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/khash_str2str.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,110 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/smpl_ilist.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,112 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bin.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,114 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/smpl_ilist.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,116 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/regidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,118 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/abuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,120 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/mw.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,124 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/gvcf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,127 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/convert.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,129 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bcftools.pysam.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,131 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/mpileup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,135 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/gvcf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,138 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfhead.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,141 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/reheader.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,144 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/dist.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,146 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfview.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,150 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/em.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,152 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/read_consensus.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,156 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfcall.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,160 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/mcall.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,164 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/dist.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,167 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfroh.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,171 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam_sample.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,173 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/LICENSE -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,176 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/regidx.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,180 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,182 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/tabix.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,185 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/read_consensus.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,188 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfnorm.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,194 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfplugin.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,197 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/extsort.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,199 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfroh.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,203 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfannotate.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,209 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfgtcheck.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,213 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfconcat.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,216 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bin.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,218 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/filter.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,224 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfsom.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,226 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/kmin.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,228 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfmerge.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,233 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/HMM.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-09-23T11:31:30,235 copying build/lib.linux-armv7l-cpython-311/pysam/include/__init__.py -> build/bdist.linux-armv7l/wheel/pysam/include 2023-09-23T11:31:30,239 creating build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,240 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_view.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,243 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam2depth.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,246 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bedidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,248 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/padding.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,250 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/phase.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,254 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/reset.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,257 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/consensus_pileup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,259 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/reference.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,262 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_opts.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,264 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_split.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,266 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/cut_target.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,269 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_quickcheck.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,271 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bamshuf.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,273 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sample.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,275 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,277 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_rmdup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,280 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_rmdup.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,282 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_sort.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,287 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_stat.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,290 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/config.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,291 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_split.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,294 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/consensus_pileup.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,297 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/faidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,300 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/stats.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,305 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_index.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,307 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/amplicon_stats.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,311 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_addrprg.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,313 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/README -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,315 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/faidx.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,318 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_utils.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,320 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bedidx.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,322 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_plbuf.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,324 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_plbuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,326 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_aux.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,327 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/cram_size.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,330 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/samtools.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,332 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/tmp_file.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,334 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_lpileup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,336 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_plcmd.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,339 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_fastq.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,342 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_opts.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,344 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_markdup.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,347 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bedcov.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,349 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_consensus.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,353 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_color.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,355 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/splaysort.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,357 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/reset.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,360 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_lpileup.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,361 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_import.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,364 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,366 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bedcov.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,369 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_aux.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,371 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/dict.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,373 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_stat.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,375 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_ampliconclip.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,377 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bamtk.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,379 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/stats_isize.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,381 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/amplicon_stats.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,384 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_mate.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,387 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/stats_isize.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,389 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_cat.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,391 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_md.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,394 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/stats.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,398 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/samtools.pysam.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,400 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_ampliconclip.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,402 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_rmdupse.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,405 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/cut_target.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,407 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_lpileup.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,409 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_flags.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,411 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/version.sh -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,413 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/tmp_file.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,414 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_plbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,416 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_color.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,418 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/samtools.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,420 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_mate.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,423 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/tmp_file.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,426 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bamshuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,428 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_md.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,431 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/coverage.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,434 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_opts.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,436 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_markdup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,439 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/consensus_pileup.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,441 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bamtk.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,443 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_view.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,446 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_samples.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,449 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sample.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,451 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,453 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_fastq.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,455 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_rmdupse.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,457 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_samples.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,460 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_addrprg.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,463 creating build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-09-23T11:31:30,464 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4/lz4.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-09-23T11:31:30,467 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4/lz4.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-09-23T11:31:30,470 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4/lz4.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-09-23T11:31:30,472 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4/LICENSE -> build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-09-23T11:31:30,474 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_plcmd.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,477 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_cat.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,480 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_quickcheck.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,482 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_consensus.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,485 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_import.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,488 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_utils.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,490 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_reheader.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,493 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/coverage.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,496 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/dict.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,498 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/LICENSE -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,500 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_sort.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,504 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/phase.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,506 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam2depth.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,509 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/stats_isize.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,511 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_utils.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,513 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_flags.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,514 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/padding.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,517 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/reference.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,519 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bedidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,522 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sample.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,524 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_reheader.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,526 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_index.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,528 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/cram_size.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,531 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_ampliconclip.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-09-23T11:31:30,535 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,536 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/Makefile -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,539 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs_bundled.mk -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,541 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,543 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/string_alloc.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,545 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_structs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,548 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_stats.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,550 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,552 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/pooled_alloc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,554 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/open_trace_file.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,556 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_encode.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,558 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_encode.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,563 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_io.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,565 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/mFILE.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,568 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_samtools.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,569 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_stats.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,571 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/pooled_alloc.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,573 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_external.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,575 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/misc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,577 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/open_trace_file.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,579 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_decode.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,584 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_io.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,588 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_decode.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,590 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_codecs.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,594 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_codecs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,597 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/os.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,599 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_index.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,601 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/mFILE.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,603 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_index.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,605 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/string_alloc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-09-23T11:31:30,607 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htsfile.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,609 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hfile_gcs.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,612 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib_vars.mk -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,614 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs 2023-09-23T11:31:30,616 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,617 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/version.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,618 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,620 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/varint2.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,623 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/htscodecs.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,624 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/permute.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,627 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/pooled_alloc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,628 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/htscodecs_endian.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,630 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16pr.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,633 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,637 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,639 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_byte.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,641 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rle.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,644 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,646 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,649 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/utils.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,651 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/varint.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,653 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,656 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/utils.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,658 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static16_int.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,661 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/c_simple_model.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,664 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,666 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,670 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,672 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/c_range_coder.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,674 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,676 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,678 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,682 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/pack.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,684 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/htscodecs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,686 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,688 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,690 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rle.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,693 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/pack.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,695 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,698 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_word.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-09-23T11:31:30,701 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/config.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,703 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/faidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,706 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/errmod.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,708 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/README -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,710 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/plugin.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,712 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/header.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,714 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/bgzf.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,718 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-09-23T11:31:30,720 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4/hts_prog_cc_warnings.m4 -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-09-23T11:31:30,722 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4/pkg.m4 -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-09-23T11:31:30,725 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4/hts_hide_dynamic_syms.m4 -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-09-23T11:31:30,727 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4/ax_check_compile_flag.m4 -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-09-23T11:31:30,729 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/config.h.in -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,731 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/md5.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,733 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/vcf.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,744 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/kstring.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,747 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/os 2023-09-23T11:31:30,748 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/os/lzma_stub.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/os 2023-09-23T11:31:30,751 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/os/rand.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/os 2023-09-23T11:31:30,753 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/vcfutils.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,756 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs_external.mk -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,758 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/sam.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,764 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hts_time_funcs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,766 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/probaln.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,768 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hfile_libcurl.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,772 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/vcf_sweep.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,774 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hfile.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,776 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/version.sh -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,778 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/config.mk.in -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,780 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/tbx.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,783 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hts_os.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,785 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/thread_pool.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,787 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/sam_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,789 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/multipart.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,792 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/bgzip.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,794 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/builddir_vars.mk.in -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,796 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/thread_pool_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,798 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/bcf_sr_sort.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,800 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/header.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,803 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hts_expr.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,806 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/regidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,809 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hfile_s3_write.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,811 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/configure.ac -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,814 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/textutils_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,817 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/configure -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,822 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/realn.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,824 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hfile_s3.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,827 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib.pc.in -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,829 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,831 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kseq.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,834 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_os.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,836 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/khash_str2int.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,838 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_expr.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,840 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/khash.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,842 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kroundup.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,844 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/sam.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,849 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/cram.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,851 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_log.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,853 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_endian.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,855 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kfunc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,858 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/knetfile.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,860 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_defs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,861 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,864 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hfile.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,867 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kstring.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,869 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/bgzf.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,871 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/tbx.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,873 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/regidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,876 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/klist.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,878 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/thread_pool.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,880 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/synced_bcf_reader.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,886 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/vcfutils.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,888 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kbitset.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,890 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/faidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,892 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/vcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,896 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/ksort.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,898 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/vcf_sweep.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-09-23T11:31:30,900 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/bcf_sr_sort.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,902 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/textutils.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,904 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/region.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,907 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib.mk -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,909 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hts.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,914 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/synced_bcf_reader.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,918 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/LICENSE -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,920 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hts_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,922 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/tabix.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,925 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hfile_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,927 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/kfunc.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-09-23T11:31:30,929 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcf.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:30,933 copying build/lib.linux-armv7l-cpython-311/pysam/libcutils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:30,947 copying build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:30,973 copying build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.c -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:30,989 copying build/lib.linux-armv7l-cpython-311/pysam/py.typed -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:30,990 copying build/lib.linux-armv7l-cpython-311/pysam/libcutils.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:30,992 copying build/lib.linux-armv7l-cpython-311/pysam/utils.py -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:30,994 copying build/lib.linux-armv7l-cpython-311/pysam/__init__.py -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:30,996 copying build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.c -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,014 copying build/lib.linux-armv7l-cpython-311/pysam/pysam_util.h -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,016 copying build/lib.linux-armv7l-cpython-311/pysam/libcvcf.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,017 copying build/lib.linux-armv7l-cpython-311/pysam/libctabix.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,019 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,023 copying build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,025 copying build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,028 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.c -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,032 copying build/lib.linux-armv7l-cpython-311/pysam/version.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,034 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,038 copying build/lib.linux-armv7l-cpython-311/pysam/libchtslib.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,040 copying build/lib.linux-armv7l-cpython-311/pysam/libchtslib.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,113 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcf.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,115 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcf.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,195 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,197 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,200 copying build/lib.linux-armv7l-cpython-311/pysam/cbcftools_util.h -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,202 copying build/lib.linux-armv7l-cpython-311/pysam/libchtslib.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,204 copying build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.c -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,212 copying build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,214 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,217 copying build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,219 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.c -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,226 copying build/lib.linux-armv7l-cpython-311/pysam/libcutils.c -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,237 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,239 copying build/lib.linux-armv7l-cpython-311/pysam/htslib_util.h -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,241 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcf.c -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,307 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,309 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,310 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,347 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,348 copying build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,350 copying build/lib.linux-armv7l-cpython-311/pysam/csamtools_util.h -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,352 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.c -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,396 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,398 copying build/lib.linux-armv7l-cpython-311/pysam/htslib_util.c -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,399 copying build/lib.linux-armv7l-cpython-311/pysam/libctabix.c -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,417 copying build/lib.linux-armv7l-cpython-311/pysam/libcvcf.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,418 copying build/lib.linux-armv7l-cpython-311/pysam/libchtslib.c -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,433 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,495 copying build/lib.linux-armv7l-cpython-311/pysam/version.py -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,497 copying build/lib.linux-armv7l-cpython-311/pysam/libchtslib.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,501 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,551 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,553 copying build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,555 copying build/lib.linux-armv7l-cpython-311/pysam/libcutils.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,557 copying build/lib.linux-armv7l-cpython-311/pysam/bcftools.py -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,560 copying build/lib.linux-armv7l-cpython-311/pysam/libcvcf.c -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,602 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.c -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,646 copying build/lib.linux-armv7l-cpython-311/pysam/samtools.py -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,649 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.c -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,654 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,660 copying build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,669 copying build/lib.linux-armv7l-cpython-311/pysam/libctabix.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,671 copying build/lib.linux-armv7l-cpython-311/pysam/libctabix.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,674 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,677 copying build/lib.linux-armv7l-cpython-311/pysam/libcutils.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,680 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,682 copying build/lib.linux-armv7l-cpython-311/pysam/Pileup.py -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,684 copying build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,686 copying build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,690 copying build/lib.linux-armv7l-cpython-311/pysam/pysam_stream.h -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,692 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,693 copying build/lib.linux-armv7l-cpython-311/pysam/libcvcf.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,746 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,793 copying build/lib.linux-armv7l-cpython-311/pysam/pysam_util.c -> build/bdist.linux-armv7l/wheel/pysam 2023-09-23T11:31:31,795 running install_egg_info 2023-09-23T11:31:31,800 Copying pysam.egg-info to build/bdist.linux-armv7l/wheel/pysam-0.21.0-py3.11.egg-info 2023-09-23T11:31:31,812 running install_scripts 2023-09-23T11:31:31,864 creating build/bdist.linux-armv7l/wheel/pysam-0.21.0.dist-info/WHEEL 2023-09-23T11:31:31,867 creating '/tmp/pip-wheel-2tmo06k5/.tmp-l9luz4lt/pysam-0.21.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-23T11:31:31,871 adding 'pysam/Pileup.py' 2023-09-23T11:31:31,873 adding 'pysam/__init__.py' 2023-09-23T11:31:31,874 adding 'pysam/bcftools.py' 2023-09-23T11:31:31,875 adding 'pysam/cbcftools_util.h' 2023-09-23T11:31:31,877 adding 'pysam/config.py' 2023-09-23T11:31:31,878 adding 'pysam/csamtools_util.h' 2023-09-23T11:31:31,879 adding 'pysam/htslib_util.c' 2023-09-23T11:31:31,881 adding 'pysam/htslib_util.h' 2023-09-23T11:31:32,064 adding 'pysam/libcalignedsegment.c' 2023-09-23T11:31:32,687 adding 'pysam/libcalignedsegment.cpython-311-arm-linux-gnueabihf.so' 2023-09-23T11:31:32,714 adding 'pysam/libcalignedsegment.pxd' 2023-09-23T11:31:32,715 adding 'pysam/libcalignedsegment.pyi' 2023-09-23T11:31:32,727 adding 'pysam/libcalignedsegment.pyx' 2023-09-23T11:31:32,859 adding 'pysam/libcalignmentfile.c' 2023-09-23T11:31:33,330 adding 'pysam/libcalignmentfile.cpython-311-arm-linux-gnueabihf.so' 2023-09-23T11:31:33,350 adding 'pysam/libcalignmentfile.pxd' 2023-09-23T11:31:33,352 adding 'pysam/libcalignmentfile.pyi' 2023-09-23T11:31:33,365 adding 'pysam/libcalignmentfile.pyx' 2023-09-23T11:31:33,595 adding 'pysam/libcbcf.c' 2023-09-23T11:31:34,391 adding 'pysam/libcbcf.cpython-311-arm-linux-gnueabihf.so' 2023-09-23T11:31:34,426 adding 'pysam/libcbcf.pxd' 2023-09-23T11:31:34,427 adding 'pysam/libcbcf.pyi' 2023-09-23T11:31:34,442 adding 'pysam/libcbcf.pyx' 2023-09-23T11:31:34,453 adding 'pysam/libcbcftools.c' 2023-09-23T11:31:35,255 adding 'pysam/libcbcftools.cpython-311-arm-linux-gnueabihf.so' 2023-09-23T11:31:35,284 adding 'pysam/libcbcftools.pxd' 2023-09-23T11:31:35,286 adding 'pysam/libcbcftools.pyi' 2023-09-23T11:31:35,287 adding 'pysam/libcbcftools.pyx' 2023-09-23T11:31:35,316 adding 'pysam/libcbgzf.c' 2023-09-23T11:31:35,388 adding 'pysam/libcbgzf.cpython-311-arm-linux-gnueabihf.so' 2023-09-23T11:31:35,392 adding 'pysam/libcbgzf.pyi' 2023-09-23T11:31:35,394 adding 'pysam/libcbgzf.pyx' 2023-09-23T11:31:35,445 adding 'pysam/libcfaidx.c' 2023-09-23T11:31:35,616 adding 'pysam/libcfaidx.cpython-311-arm-linux-gnueabihf.so' 2023-09-23T11:31:35,623 adding 'pysam/libcfaidx.pxd' 2023-09-23T11:31:35,624 adding 'pysam/libcfaidx.pyi' 2023-09-23T11:31:35,627 adding 'pysam/libcfaidx.pyx' 2023-09-23T11:31:35,682 adding 'pysam/libchtslib.c' 2023-09-23T11:31:36,745 adding 'pysam/libchtslib.cpython-311-arm-linux-gnueabihf.so' 2023-09-23T11:31:36,797 adding 'pysam/libchtslib.pxd' 2023-09-23T11:31:36,800 adding 'pysam/libchtslib.pyi' 2023-09-23T11:31:36,802 adding 'pysam/libchtslib.pyx' 2023-09-23T11:31:36,824 adding 'pysam/libcsamfile.c' 2023-09-23T11:31:36,850 adding 'pysam/libcsamfile.cpython-311-arm-linux-gnueabihf.so' 2023-09-23T11:31:36,853 adding 'pysam/libcsamfile.pxd' 2023-09-23T11:31:36,854 adding 'pysam/libcsamfile.pyi' 2023-09-23T11:31:36,855 adding 'pysam/libcsamfile.pyx' 2023-09-23T11:31:36,865 adding 'pysam/libcsamtools.c' 2023-09-23T11:31:37,423 adding 'pysam/libcsamtools.cpython-311-arm-linux-gnueabihf.so' 2023-09-23T11:31:37,444 adding 'pysam/libcsamtools.pxd' 2023-09-23T11:31:37,445 adding 'pysam/libcsamtools.pyi' 2023-09-23T11:31:37,446 adding 'pysam/libcsamtools.pyx' 2023-09-23T11:31:37,518 adding 'pysam/libctabix.c' 2023-09-23T11:31:37,767 adding 'pysam/libctabix.cpython-311-arm-linux-gnueabihf.so' 2023-09-23T11:31:37,778 adding 'pysam/libctabix.pxd' 2023-09-23T11:31:37,779 adding 'pysam/libctabix.pyi' 2023-09-23T11:31:37,784 adding 'pysam/libctabix.pyx' 2023-09-23T11:31:37,858 adding 'pysam/libctabixproxies.c' 2023-09-23T11:31:38,105 adding 'pysam/libctabixproxies.cpython-311-arm-linux-gnueabihf.so' 2023-09-23T11:31:38,116 adding 'pysam/libctabixproxies.pxd' 2023-09-23T11:31:38,117 adding 'pysam/libctabixproxies.pyi' 2023-09-23T11:31:38,121 adding 'pysam/libctabixproxies.pyx' 2023-09-23T11:31:38,163 adding 'pysam/libcutils.c' 2023-09-23T11:31:38,298 adding 'pysam/libcutils.cpython-311-arm-linux-gnueabihf.so' 2023-09-23T11:31:38,304 adding 'pysam/libcutils.pxd' 2023-09-23T11:31:38,305 adding 'pysam/libcutils.pyi' 2023-09-23T11:31:38,308 adding 'pysam/libcutils.pyx' 2023-09-23T11:31:38,436 adding 'pysam/libcvcf.c' 2023-09-23T11:31:38,992 adding 'pysam/libcvcf.cpython-311-arm-linux-gnueabihf.so' 2023-09-23T11:31:39,014 adding 'pysam/libcvcf.pxd' 2023-09-23T11:31:39,015 adding 'pysam/libcvcf.pyi' 2023-09-23T11:31:39,021 adding 'pysam/libcvcf.pyx' 2023-09-23T11:31:39,023 adding 'pysam/py.typed' 2023-09-23T11:31:39,024 adding 'pysam/pysam_stream.h' 2023-09-23T11:31:39,025 adding 'pysam/pysam_util.c' 2023-09-23T11:31:39,027 adding 'pysam/pysam_util.h' 2023-09-23T11:31:39,028 adding 'pysam/samtools.py' 2023-09-23T11:31:39,030 adding 'pysam/utils.py' 2023-09-23T11:31:39,031 adding 'pysam/version.h' 2023-09-23T11:31:39,033 adding 'pysam/version.py' 2023-09-23T11:31:39,034 adding 'pysam/version.pyi' 2023-09-23T11:31:39,035 adding 'pysam/include/__init__.py' 2023-09-23T11:31:39,040 adding 'pysam/include/bcftools/HMM.c' 2023-09-23T11:31:39,043 adding 'pysam/include/bcftools/HMM.c.pysam.c' 2023-09-23T11:31:39,044 adding 'pysam/include/bcftools/HMM.h' 2023-09-23T11:31:39,051 adding 'pysam/include/bcftools/LICENSE' 2023-09-23T11:31:39,053 adding 'pysam/include/bcftools/README' 2023-09-23T11:31:39,056 adding 'pysam/include/bcftools/abuf.c' 2023-09-23T11:31:39,060 adding 'pysam/include/bcftools/abuf.c.pysam.c' 2023-09-23T11:31:39,062 adding 'pysam/include/bcftools/abuf.h' 2023-09-23T11:31:39,067 adding 'pysam/include/bcftools/bam2bcf.c' 2023-09-23T11:31:39,074 adding 'pysam/include/bcftools/bam2bcf.c.pysam.c' 2023-09-23T11:31:39,076 adding 'pysam/include/bcftools/bam2bcf.h' 2023-09-23T11:31:39,080 adding 'pysam/include/bcftools/bam2bcf_iaux.c' 2023-09-23T11:31:39,084 adding 'pysam/include/bcftools/bam2bcf_iaux.c.pysam.c' 2023-09-23T11:31:39,088 adding 'pysam/include/bcftools/bam2bcf_indel.c' 2023-09-23T11:31:39,093 adding 'pysam/include/bcftools/bam2bcf_indel.c.pysam.c' 2023-09-23T11:31:39,095 adding 'pysam/include/bcftools/bam_sample.c' 2023-09-23T11:31:39,097 adding 'pysam/include/bcftools/bam_sample.c.pysam.c' 2023-09-23T11:31:39,099 adding 'pysam/include/bcftools/bam_sample.h' 2023-09-23T11:31:39,100 adding 'pysam/include/bcftools/bcftools.h' 2023-09-23T11:31:39,101 adding 'pysam/include/bcftools/bcftools.pysam.c' 2023-09-23T11:31:39,102 adding 'pysam/include/bcftools/bcftools.pysam.h' 2023-09-23T11:31:39,103 adding 'pysam/include/bcftools/bin.c' 2023-09-23T11:31:39,105 adding 'pysam/include/bcftools/bin.c.pysam.c' 2023-09-23T11:31:39,106 adding 'pysam/include/bcftools/bin.h' 2023-09-23T11:31:39,108 adding 'pysam/include/bcftools/call.h' 2023-09-23T11:31:39,110 adding 'pysam/include/bcftools/ccall.c' 2023-09-23T11:31:39,112 adding 'pysam/include/bcftools/ccall.c.pysam.c' 2023-09-23T11:31:39,113 adding 'pysam/include/bcftools/cigar_state.h' 2023-09-23T11:31:39,115 adding 'pysam/include/bcftools/cols.c' 2023-09-23T11:31:39,116 adding 'pysam/include/bcftools/cols.c.pysam.c' 2023-09-23T11:31:39,117 adding 'pysam/include/bcftools/cols.h' 2023-09-23T11:31:39,118 adding 'pysam/include/bcftools/config.h' 2023-09-23T11:31:39,124 adding 'pysam/include/bcftools/consensus.c' 2023-09-23T11:31:39,130 adding 'pysam/include/bcftools/consensus.c.pysam.c' 2023-09-23T11:31:39,136 adding 'pysam/include/bcftools/convert.c' 2023-09-23T11:31:39,143 adding 'pysam/include/bcftools/convert.c.pysam.c' 2023-09-23T11:31:39,144 adding 'pysam/include/bcftools/convert.h' 2023-09-23T11:31:39,163 adding 'pysam/include/bcftools/csq.c' 2023-09-23T11:31:39,183 adding 'pysam/include/bcftools/csq.c.pysam.c' 2023-09-23T11:31:39,186 adding 'pysam/include/bcftools/dbuf.h' 2023-09-23T11:31:39,187 adding 'pysam/include/bcftools/dist.c' 2023-09-23T11:31:39,189 adding 'pysam/include/bcftools/dist.c.pysam.c' 2023-09-23T11:31:39,190 adding 'pysam/include/bcftools/dist.h' 2023-09-23T11:31:39,192 adding 'pysam/include/bcftools/em.c' 2023-09-23T11:31:39,194 adding 'pysam/include/bcftools/em.c.pysam.c' 2023-09-23T11:31:39,196 adding 'pysam/include/bcftools/extsort.c' 2023-09-23T11:31:39,198 adding 'pysam/include/bcftools/extsort.c.pysam.c' 2023-09-23T11:31:39,199 adding 'pysam/include/bcftools/extsort.h' 2023-09-23T11:31:39,212 adding 'pysam/include/bcftools/filter.c' 2023-09-23T11:31:39,227 adding 'pysam/include/bcftools/filter.c.pysam.c' 2023-09-23T11:31:39,229 adding 'pysam/include/bcftools/filter.h' 2023-09-23T11:31:39,231 adding 'pysam/include/bcftools/gvcf.c' 2023-09-23T11:31:39,232 adding 'pysam/include/bcftools/gvcf.c.pysam.c' 2023-09-23T11:31:39,234 adding 'pysam/include/bcftools/gvcf.h' 2023-09-23T11:31:39,236 adding 'pysam/include/bcftools/hclust.c' 2023-09-23T11:31:39,238 adding 'pysam/include/bcftools/hclust.c.pysam.c' 2023-09-23T11:31:39,240 adding 'pysam/include/bcftools/hclust.h' 2023-09-23T11:31:39,241 adding 'pysam/include/bcftools/hex.h' 2023-09-23T11:31:39,242 adding 'pysam/include/bcftools/khash_str2str.h' 2023-09-23T11:31:39,244 adding 'pysam/include/bcftools/kheap.h' 2023-09-23T11:31:39,246 adding 'pysam/include/bcftools/kmin.c' 2023-09-23T11:31:39,248 adding 'pysam/include/bcftools/kmin.c.pysam.c' 2023-09-23T11:31:39,249 adding 'pysam/include/bcftools/kmin.h' 2023-09-23T11:31:39,251 adding 'pysam/include/bcftools/main.c' 2023-09-23T11:31:39,253 adding 'pysam/include/bcftools/main.c.pysam.c' 2023-09-23T11:31:39,260 adding 'pysam/include/bcftools/mcall.c' 2023-09-23T11:31:39,268 adding 'pysam/include/bcftools/mcall.c.pysam.c' 2023-09-23T11:31:39,276 adding 'pysam/include/bcftools/mpileup.c' 2023-09-23T11:31:39,285 adding 'pysam/include/bcftools/mpileup.c.pysam.c' 2023-09-23T11:31:39,288 adding 'pysam/include/bcftools/mw.h' 2023-09-23T11:31:39,290 adding 'pysam/include/bcftools/ploidy.c' 2023-09-23T11:31:39,292 adding 'pysam/include/bcftools/ploidy.c.pysam.c' 2023-09-23T11:31:39,294 adding 'pysam/include/bcftools/ploidy.h' 2023-09-23T11:31:39,296 adding 'pysam/include/bcftools/prob1.c' 2023-09-23T11:31:39,299 adding 'pysam/include/bcftools/prob1.c.pysam.c' 2023-09-23T11:31:39,300 adding 'pysam/include/bcftools/prob1.h' 2023-09-23T11:31:39,302 adding 'pysam/include/bcftools/rbuf.h' 2023-09-23T11:31:39,306 adding 'pysam/include/bcftools/read_consensus.c' 2023-09-23T11:31:39,309 adding 'pysam/include/bcftools/read_consensus.c.pysam.c' 2023-09-23T11:31:39,311 adding 'pysam/include/bcftools/read_consensus.h' 2023-09-23T11:31:39,313 adding 'pysam/include/bcftools/regidx.c' 2023-09-23T11:31:39,316 adding 'pysam/include/bcftools/regidx.c.pysam.c' 2023-09-23T11:31:39,318 adding 'pysam/include/bcftools/regidx.h' 2023-09-23T11:31:39,321 adding 'pysam/include/bcftools/reheader.c' 2023-09-23T11:31:39,324 adding 'pysam/include/bcftools/reheader.c.pysam.c' 2023-09-23T11:31:39,326 adding 'pysam/include/bcftools/smpl_ilist.c' 2023-09-23T11:31:39,327 adding 'pysam/include/bcftools/smpl_ilist.c.pysam.c' 2023-09-23T11:31:39,329 adding 'pysam/include/bcftools/smpl_ilist.h' 2023-09-23T11:31:39,330 adding 'pysam/include/bcftools/str_finder.c' 2023-09-23T11:31:39,332 adding 'pysam/include/bcftools/str_finder.c.pysam.c' 2023-09-23T11:31:39,333 adding 'pysam/include/bcftools/str_finder.h' 2023-09-23T11:31:39,335 adding 'pysam/include/bcftools/tabix.c' 2023-09-23T11:31:39,336 adding 'pysam/include/bcftools/tabix.c.pysam.c' 2023-09-23T11:31:39,338 adding 'pysam/include/bcftools/tsv2vcf.c' 2023-09-23T11:31:39,339 adding 'pysam/include/bcftools/tsv2vcf.c.pysam.c' 2023-09-23T11:31:39,340 adding 'pysam/include/bcftools/tsv2vcf.h' 2023-09-23T11:31:39,344 adding 'pysam/include/bcftools/utlist.h' 2023-09-23T11:31:39,347 adding 'pysam/include/bcftools/variantkey.h' 2023-09-23T11:31:39,361 adding 'pysam/include/bcftools/vcfannotate.c' 2023-09-23T11:31:39,377 adding 'pysam/include/bcftools/vcfannotate.c.pysam.c' 2023-09-23T11:31:39,381 adding 'pysam/include/bcftools/vcfbuf.c' 2023-09-23T11:31:39,383 adding 'pysam/include/bcftools/vcfbuf.c.pysam.c' 2023-09-23T11:31:39,385 adding 'pysam/include/bcftools/vcfbuf.h' 2023-09-23T11:31:39,390 adding 'pysam/include/bcftools/vcfcall.c' 2023-09-23T11:31:39,396 adding 'pysam/include/bcftools/vcfcall.c.pysam.c' 2023-09-23T11:31:39,402 adding 'pysam/include/bcftools/vcfcnv.c' 2023-09-23T11:31:39,408 adding 'pysam/include/bcftools/vcfcnv.c.pysam.c' 2023-09-23T11:31:39,414 adding 'pysam/include/bcftools/vcfconcat.c' 2023-09-23T11:31:39,420 adding 'pysam/include/bcftools/vcfconcat.c.pysam.c' 2023-09-23T11:31:39,427 adding 'pysam/include/bcftools/vcfconvert.c' 2023-09-23T11:31:39,434 adding 'pysam/include/bcftools/vcfconvert.c.pysam.c' 2023-09-23T11:31:39,438 adding 'pysam/include/bcftools/vcffilter.c' 2023-09-23T11:31:39,442 adding 'pysam/include/bcftools/vcffilter.c.pysam.c' 2023-09-23T11:31:39,447 adding 'pysam/include/bcftools/vcfgtcheck.c' 2023-09-23T11:31:39,453 adding 'pysam/include/bcftools/vcfgtcheck.c.pysam.c' 2023-09-23T11:31:39,455 adding 'pysam/include/bcftools/vcfhead.c' 2023-09-23T11:31:39,456 adding 'pysam/include/bcftools/vcfhead.c.pysam.c' 2023-09-23T11:31:39,458 adding 'pysam/include/bcftools/vcfindex.c' 2023-09-23T11:31:39,460 adding 'pysam/include/bcftools/vcfindex.c.pysam.c' 2023-09-23T11:31:39,464 adding 'pysam/include/bcftools/vcfisec.c' 2023-09-23T11:31:39,467 adding 'pysam/include/bcftools/vcfisec.c.pysam.c' 2023-09-23T11:31:39,481 adding 'pysam/include/bcftools/vcfmerge.c' 2023-09-23T11:31:39,496 adding 'pysam/include/bcftools/vcfmerge.c.pysam.c' 2023-09-23T11:31:39,506 adding 'pysam/include/bcftools/vcfnorm.c' 2023-09-23T11:31:39,516 adding 'pysam/include/bcftools/vcfnorm.c.pysam.c' 2023-09-23T11:31:39,520 adding 'pysam/include/bcftools/vcfplugin.c' 2023-09-23T11:31:39,524 adding 'pysam/include/bcftools/vcfplugin.c.pysam.c' 2023-09-23T11:31:39,526 adding 'pysam/include/bcftools/vcfquery.c' 2023-09-23T11:31:39,529 adding 'pysam/include/bcftools/vcfquery.c.pysam.c' 2023-09-23T11:31:39,534 adding 'pysam/include/bcftools/vcfroh.c' 2023-09-23T11:31:39,540 adding 'pysam/include/bcftools/vcfroh.c.pysam.c' 2023-09-23T11:31:39,543 adding 'pysam/include/bcftools/vcfsom.c' 2023-09-23T11:31:39,546 adding 'pysam/include/bcftools/vcfsom.c.pysam.c' 2023-09-23T11:31:39,548 adding 'pysam/include/bcftools/vcfsort.c' 2023-09-23T11:31:39,551 adding 'pysam/include/bcftools/vcfsort.c.pysam.c' 2023-09-23T11:31:39,559 adding 'pysam/include/bcftools/vcfstats.c' 2023-09-23T11:31:39,567 adding 'pysam/include/bcftools/vcfstats.c.pysam.c' 2023-09-23T11:31:39,572 adding 'pysam/include/bcftools/vcfview.c' 2023-09-23T11:31:39,576 adding 'pysam/include/bcftools/vcfview.c.pysam.c' 2023-09-23T11:31:39,578 adding 'pysam/include/bcftools/vcmp.c' 2023-09-23T11:31:39,579 adding 'pysam/include/bcftools/vcmp.c.pysam.c' 2023-09-23T11:31:39,581 adding 'pysam/include/bcftools/vcmp.h' 2023-09-23T11:31:39,582 adding 'pysam/include/bcftools/version.c' 2023-09-23T11:31:39,583 adding 'pysam/include/bcftools/version.c.pysam.c' 2023-09-23T11:31:39,585 adding 'pysam/include/bcftools/version.sh' 2023-09-23T11:31:39,588 adding 'pysam/include/htslib/LICENSE' 2023-09-23T11:31:39,592 adding 'pysam/include/htslib/Makefile' 2023-09-23T11:31:39,594 adding 'pysam/include/htslib/README' 2023-09-23T11:31:39,597 adding 'pysam/include/htslib/bcf_sr_sort.c' 2023-09-23T11:31:39,598 adding 'pysam/include/htslib/bcf_sr_sort.h' 2023-09-23T11:31:39,608 adding 'pysam/include/htslib/bgzf.c' 2023-09-23T11:31:39,611 adding 'pysam/include/htslib/bgzip.c' 2023-09-23T11:31:39,612 adding 'pysam/include/htslib/builddir_vars.mk.in' 2023-09-23T11:31:39,614 adding 'pysam/include/htslib/config.h' 2023-09-23T11:31:39,615 adding 'pysam/include/htslib/config.h.in' 2023-09-23T11:31:39,617 adding 'pysam/include/htslib/config.mk.in' 2023-09-23T11:31:39,638 adding 'pysam/include/htslib/configure' 2023-09-23T11:31:39,643 adding 'pysam/include/htslib/configure.ac' 2023-09-23T11:31:39,644 adding 'pysam/include/htslib/errmod.c' 2023-09-23T11:31:39,648 adding 'pysam/include/htslib/faidx.c' 2023-09-23T11:31:39,656 adding 'pysam/include/htslib/header.c' 2023-09-23T11:31:39,659 adding 'pysam/include/htslib/header.h' 2023-09-23T11:31:39,664 adding 'pysam/include/htslib/hfile.c' 2023-09-23T11:31:39,666 adding 'pysam/include/htslib/hfile_gcs.c' 2023-09-23T11:31:39,668 adding 'pysam/include/htslib/hfile_internal.h' 2023-09-23T11:31:39,673 adding 'pysam/include/htslib/hfile_libcurl.c' 2023-09-23T11:31:39,678 adding 'pysam/include/htslib/hfile_s3.c' 2023-09-23T11:31:39,681 adding 'pysam/include/htslib/hfile_s3_write.c' 2023-09-23T11:31:39,699 adding 'pysam/include/htslib/hts.c' 2023-09-23T11:31:39,704 adding 'pysam/include/htslib/hts_expr.c' 2023-09-23T11:31:39,705 adding 'pysam/include/htslib/hts_internal.h' 2023-09-23T11:31:39,707 adding 'pysam/include/htslib/hts_os.c' 2023-09-23T11:31:39,708 adding 'pysam/include/htslib/hts_time_funcs.h' 2023-09-23T11:31:39,710 adding 'pysam/include/htslib/htscodecs_bundled.mk' 2023-09-23T11:31:39,711 adding 'pysam/include/htslib/htscodecs_external.mk' 2023-09-23T11:31:39,713 adding 'pysam/include/htslib/htsfile.c' 2023-09-23T11:31:39,714 adding 'pysam/include/htslib/htslib.mk' 2023-09-23T11:31:39,716 adding 'pysam/include/htslib/htslib.pc.in' 2023-09-23T11:31:39,717 adding 'pysam/include/htslib/htslib_vars.mk' 2023-09-23T11:31:39,719 adding 'pysam/include/htslib/kfunc.c' 2023-09-23T11:31:39,721 adding 'pysam/include/htslib/kstring.c' 2023-09-23T11:31:39,723 adding 'pysam/include/htslib/md5.c' 2023-09-23T11:31:39,725 adding 'pysam/include/htslib/multipart.c' 2023-09-23T11:31:39,726 adding 'pysam/include/htslib/plugin.c' 2023-09-23T11:31:39,729 adding 'pysam/include/htslib/probaln.c' 2023-09-23T11:31:39,731 adding 'pysam/include/htslib/realn.c' 2023-09-23T11:31:39,734 adding 'pysam/include/htslib/regidx.c' 2023-09-23T11:31:39,735 adding 'pysam/include/htslib/region.c' 2023-09-23T11:31:39,759 adding 'pysam/include/htslib/sam.c' 2023-09-23T11:31:39,762 adding 'pysam/include/htslib/sam_internal.h' 2023-09-23T11:31:39,768 adding 'pysam/include/htslib/synced_bcf_reader.c' 2023-09-23T11:31:39,771 adding 'pysam/include/htslib/tabix.c' 2023-09-23T11:31:39,774 adding 'pysam/include/htslib/tbx.c' 2023-09-23T11:31:39,776 adding 'pysam/include/htslib/textutils.c' 2023-09-23T11:31:39,778 adding 'pysam/include/htslib/textutils_internal.h' 2023-09-23T11:31:39,783 adding 'pysam/include/htslib/thread_pool.c' 2023-09-23T11:31:39,785 adding 'pysam/include/htslib/thread_pool_internal.h' 2023-09-23T11:31:39,805 adding 'pysam/include/htslib/vcf.c' 2023-09-23T11:31:39,808 adding 'pysam/include/htslib/vcf_sweep.c' 2023-09-23T11:31:39,811 adding 'pysam/include/htslib/vcfutils.c' 2023-09-23T11:31:39,813 adding 'pysam/include/htslib/version.sh' 2023-09-23T11:31:39,815 adding 'pysam/include/htslib/cram/cram.h' 2023-09-23T11:31:39,826 adding 'pysam/include/htslib/cram/cram_codecs.c' 2023-09-23T11:31:39,829 adding 'pysam/include/htslib/cram/cram_codecs.h' 2023-09-23T11:31:39,841 adding 'pysam/include/htslib/cram/cram_decode.c' 2023-09-23T11:31:39,843 adding 'pysam/include/htslib/cram/cram_decode.h' 2023-09-23T11:31:39,857 adding 'pysam/include/htslib/cram/cram_encode.c' 2023-09-23T11:31:39,860 adding 'pysam/include/htslib/cram/cram_encode.h' 2023-09-23T11:31:39,863 adding 'pysam/include/htslib/cram/cram_external.c' 2023-09-23T11:31:39,866 adding 'pysam/include/htslib/cram/cram_index.c' 2023-09-23T11:31:39,868 adding 'pysam/include/htslib/cram/cram_index.h' 2023-09-23T11:31:39,887 adding 'pysam/include/htslib/cram/cram_io.c' 2023-09-23T11:31:39,890 adding 'pysam/include/htslib/cram/cram_io.h' 2023-09-23T11:31:39,892 adding 'pysam/include/htslib/cram/cram_samtools.h' 2023-09-23T11:31:39,894 adding 'pysam/include/htslib/cram/cram_stats.c' 2023-09-23T11:31:39,895 adding 'pysam/include/htslib/cram/cram_stats.h' 2023-09-23T11:31:39,899 adding 'pysam/include/htslib/cram/cram_structs.h' 2023-09-23T11:31:39,901 adding 'pysam/include/htslib/cram/mFILE.c' 2023-09-23T11:31:39,903 adding 'pysam/include/htslib/cram/mFILE.h' 2023-09-23T11:31:39,904 adding 'pysam/include/htslib/cram/misc.h' 2023-09-23T11:31:39,906 adding 'pysam/include/htslib/cram/open_trace_file.c' 2023-09-23T11:31:39,908 adding 'pysam/include/htslib/cram/open_trace_file.h' 2023-09-23T11:31:39,909 adding 'pysam/include/htslib/cram/os.h' 2023-09-23T11:31:39,911 adding 'pysam/include/htslib/cram/pooled_alloc.c' 2023-09-23T11:31:39,912 adding 'pysam/include/htslib/cram/pooled_alloc.h' 2023-09-23T11:31:39,914 adding 'pysam/include/htslib/cram/string_alloc.c' 2023-09-23T11:31:39,915 adding 'pysam/include/htslib/cram/string_alloc.h' 2023-09-23T11:31:39,920 adding 'pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.c' 2023-09-23T11:31:39,922 adding 'pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.h' 2023-09-23T11:31:39,923 adding 'pysam/include/htslib/htscodecs/htscodecs/c_range_coder.h' 2023-09-23T11:31:39,925 adding 'pysam/include/htslib/htscodecs/htscodecs/c_simple_model.h' 2023-09-23T11:31:39,930 adding 'pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.c' 2023-09-23T11:31:39,932 adding 'pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.h' 2023-09-23T11:31:39,934 adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs.c' 2023-09-23T11:31:39,935 adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs.h' 2023-09-23T11:31:39,936 adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs_endian.h' 2023-09-23T11:31:39,938 adding 'pysam/include/htslib/htscodecs/htscodecs/pack.c' 2023-09-23T11:31:39,940 adding 'pysam/include/htslib/htscodecs/htscodecs/pack.h' 2023-09-23T11:31:39,942 adding 'pysam/include/htslib/htscodecs/htscodecs/permute.h' 2023-09-23T11:31:39,944 adding 'pysam/include/htslib/htscodecs/htscodecs/pooled_alloc.h' 2023-09-23T11:31:39,946 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_byte.h' 2023-09-23T11:31:39,949 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static.c' 2023-09-23T11:31:39,951 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static.h' 2023-09-23T11:31:39,953 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static16_int.h' 2023-09-23T11:31:39,956 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.c' 2023-09-23T11:31:39,957 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.h' 2023-09-23T11:31:39,962 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c' 2023-09-23T11:31:39,967 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c' 2023-09-23T11:31:39,974 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c' 2023-09-23T11:31:39,988 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c' 2023-09-23T11:31:39,990 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16.h' 2023-09-23T11:31:39,996 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16pr.c' 2023-09-23T11:31:39,999 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_word.h' 2023-09-23T11:31:40,001 adding 'pysam/include/htslib/htscodecs/htscodecs/rle.c' 2023-09-23T11:31:40,002 adding 'pysam/include/htslib/htscodecs/htscodecs/rle.h' 2023-09-23T11:31:40,008 adding 'pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.c' 2023-09-23T11:31:40,010 adding 'pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.h' 2023-09-23T11:31:40,012 adding 'pysam/include/htslib/htscodecs/htscodecs/utils.c' 2023-09-23T11:31:40,014 adding 'pysam/include/htslib/htscodecs/htscodecs/utils.h' 2023-09-23T11:31:40,016 adding 'pysam/include/htslib/htscodecs/htscodecs/varint.h' 2023-09-23T11:31:40,018 adding 'pysam/include/htslib/htscodecs/htscodecs/varint2.h' 2023-09-23T11:31:40,019 adding 'pysam/include/htslib/htscodecs/htscodecs/version.h' 2023-09-23T11:31:40,022 adding 'pysam/include/htslib/htslib/bgzf.h' 2023-09-23T11:31:40,026 adding 'pysam/include/htslib/htslib/cram.h' 2023-09-23T11:31:40,028 adding 'pysam/include/htslib/htslib/faidx.h' 2023-09-23T11:31:40,030 adding 'pysam/include/htslib/htslib/hfile.h' 2023-09-23T11:31:40,038 adding 'pysam/include/htslib/htslib/hts.h' 2023-09-23T11:31:40,040 adding 'pysam/include/htslib/htslib/hts_defs.h' 2023-09-23T11:31:40,042 adding 'pysam/include/htslib/htslib/hts_endian.h' 2023-09-23T11:31:40,044 adding 'pysam/include/htslib/htslib/hts_expr.h' 2023-09-23T11:31:40,046 adding 'pysam/include/htslib/htslib/hts_log.h' 2023-09-23T11:31:40,047 adding 'pysam/include/htslib/htslib/hts_os.h' 2023-09-23T11:31:40,048 adding 'pysam/include/htslib/htslib/kbitset.h' 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2023-09-23T11:31:40,094 adding 'pysam/include/htslib/htslib/vcf.h' 2023-09-23T11:31:40,096 adding 'pysam/include/htslib/htslib/vcf_sweep.h' 2023-09-23T11:31:40,097 adding 'pysam/include/htslib/htslib/vcfutils.h' 2023-09-23T11:31:40,099 adding 'pysam/include/htslib/m4/ax_check_compile_flag.m4' 2023-09-23T11:31:40,101 adding 'pysam/include/htslib/m4/hts_hide_dynamic_syms.m4' 2023-09-23T11:31:40,102 adding 'pysam/include/htslib/m4/hts_prog_cc_warnings.m4' 2023-09-23T11:31:40,321 adding 'pysam/include/htslib/m4/pkg.m4' 2023-09-23T11:31:40,322 adding 'pysam/include/htslib/os/lzma_stub.h' 2023-09-23T11:31:40,324 adding 'pysam/include/htslib/os/rand.c' 2023-09-23T11:31:40,327 adding 'pysam/include/samtools/LICENSE' 2023-09-23T11:31:40,329 adding 'pysam/include/samtools/README' 2023-09-23T11:31:40,336 adding 'pysam/include/samtools/amplicon_stats.c' 2023-09-23T11:31:40,343 adding 'pysam/include/samtools/amplicon_stats.c.pysam.c' 2023-09-23T11:31:40,345 adding 'pysam/include/samtools/bam.c' 2023-09-23T11:31:40,347 adding 'pysam/include/samtools/bam.c.pysam.c' 2023-09-23T11:31:40,348 adding 'pysam/include/samtools/bam.h' 2023-09-23T11:31:40,352 adding 'pysam/include/samtools/bam2depth.c' 2023-09-23T11:31:40,356 adding 'pysam/include/samtools/bam2depth.c.pysam.c' 2023-09-23T11:31:40,358 adding 'pysam/include/samtools/bam_addrprg.c' 2023-09-23T11:31:40,361 adding 'pysam/include/samtools/bam_addrprg.c.pysam.c' 2023-09-23T11:31:40,364 adding 'pysam/include/samtools/bam_ampliconclip.c' 2023-09-23T11:31:40,368 adding 'pysam/include/samtools/bam_ampliconclip.c.pysam.c' 2023-09-23T11:31:40,370 adding 'pysam/include/samtools/bam_ampliconclip.h' 2023-09-23T11:31:40,371 adding 'pysam/include/samtools/bam_aux.c' 2023-09-23T11:31:40,372 adding 'pysam/include/samtools/bam_aux.c.pysam.c' 2023-09-23T11:31:40,374 adding 'pysam/include/samtools/bam_cat.c' 2023-09-23T11:31:40,377 adding 'pysam/include/samtools/bam_cat.c.pysam.c' 2023-09-23T11:31:40,379 adding 'pysam/include/samtools/bam_color.c' 2023-09-23T11:31:40,380 adding 'pysam/include/samtools/bam_color.c.pysam.c' 2023-09-23T11:31:40,391 adding 'pysam/include/samtools/bam_consensus.c' 2023-09-23T11:31:40,404 adding 'pysam/include/samtools/bam_consensus.c.pysam.c' 2023-09-23T11:31:40,408 adding 'pysam/include/samtools/bam_fastq.c' 2023-09-23T11:31:40,412 adding 'pysam/include/samtools/bam_fastq.c.pysam.c' 2023-09-23T11:31:40,413 adding 'pysam/include/samtools/bam_flags.c' 2023-09-23T11:31:40,415 adding 'pysam/include/samtools/bam_flags.c.pysam.c' 2023-09-23T11:31:40,417 adding 'pysam/include/samtools/bam_import.c' 2023-09-23T11:31:40,419 adding 'pysam/include/samtools/bam_import.c.pysam.c' 2023-09-23T11:31:40,421 adding 'pysam/include/samtools/bam_index.c' 2023-09-23T11:31:40,423 adding 'pysam/include/samtools/bam_index.c.pysam.c' 2023-09-23T11:31:40,425 adding 'pysam/include/samtools/bam_lpileup.c' 2023-09-23T11:31:40,426 adding 'pysam/include/samtools/bam_lpileup.c.pysam.c' 2023-09-23T11:31:40,428 adding 'pysam/include/samtools/bam_lpileup.h' 2023-09-23T11:31:40,436 adding 'pysam/include/samtools/bam_markdup.c' 2023-09-23T11:31:40,445 adding 'pysam/include/samtools/bam_markdup.c.pysam.c' 2023-09-23T11:31:40,449 adding 'pysam/include/samtools/bam_mate.c' 2023-09-23T11:31:40,452 adding 'pysam/include/samtools/bam_mate.c.pysam.c' 2023-09-23T11:31:40,455 adding 'pysam/include/samtools/bam_md.c' 2023-09-23T11:31:40,458 adding 'pysam/include/samtools/bam_md.c.pysam.c' 2023-09-23T11:31:40,459 adding 'pysam/include/samtools/bam_plbuf.c' 2023-09-23T11:31:40,460 adding 'pysam/include/samtools/bam_plbuf.c.pysam.c' 2023-09-23T11:31:40,462 adding 'pysam/include/samtools/bam_plbuf.h' 2023-09-23T11:31:40,467 adding 'pysam/include/samtools/bam_plcmd.c' 2023-09-23T11:31:40,472 adding 'pysam/include/samtools/bam_plcmd.c.pysam.c' 2023-09-23T11:31:40,474 adding 'pysam/include/samtools/bam_quickcheck.c' 2023-09-23T11:31:40,476 adding 'pysam/include/samtools/bam_quickcheck.c.pysam.c' 2023-09-23T11:31:40,478 adding 'pysam/include/samtools/bam_reheader.c' 2023-09-23T11:31:40,481 adding 'pysam/include/samtools/bam_reheader.c.pysam.c' 2023-09-23T11:31:40,483 adding 'pysam/include/samtools/bam_rmdup.c' 2023-09-23T11:31:40,485 adding 'pysam/include/samtools/bam_rmdup.c.pysam.c' 2023-09-23T11:31:40,487 adding 'pysam/include/samtools/bam_rmdupse.c' 2023-09-23T11:31:40,488 adding 'pysam/include/samtools/bam_rmdupse.c.pysam.c' 2023-09-23T11:31:40,490 adding 'pysam/include/samtools/bam_samples.c' 2023-09-23T11:31:40,493 adding 'pysam/include/samtools/bam_samples.c.pysam.c' 2023-09-23T11:31:40,506 adding 'pysam/include/samtools/bam_sort.c' 2023-09-23T11:31:40,521 adding 'pysam/include/samtools/bam_sort.c.pysam.c' 2023-09-23T11:31:40,525 adding 'pysam/include/samtools/bam_split.c' 2023-09-23T11:31:40,527 adding 'pysam/include/samtools/bam_split.c.pysam.c' 2023-09-23T11:31:40,529 adding 'pysam/include/samtools/bam_stat.c' 2023-09-23T11:31:40,531 adding 'pysam/include/samtools/bam_stat.c.pysam.c' 2023-09-23T11:31:40,534 adding 'pysam/include/samtools/bamshuf.c' 2023-09-23T11:31:40,536 adding 'pysam/include/samtools/bamshuf.c.pysam.c' 2023-09-23T11:31:40,538 adding 'pysam/include/samtools/bamtk.c' 2023-09-23T11:31:40,541 adding 'pysam/include/samtools/bamtk.c.pysam.c' 2023-09-23T11:31:40,542 adding 'pysam/include/samtools/bedcov.c' 2023-09-23T11:31:40,544 adding 'pysam/include/samtools/bedcov.c.pysam.c' 2023-09-23T11:31:40,547 adding 'pysam/include/samtools/bedidx.c' 2023-09-23T11:31:40,550 adding 'pysam/include/samtools/bedidx.c.pysam.c' 2023-09-23T11:31:40,551 adding 'pysam/include/samtools/bedidx.h' 2023-09-23T11:31:40,552 adding 'pysam/include/samtools/config.h' 2023-09-23T11:31:40,555 adding 'pysam/include/samtools/consensus_pileup.c' 2023-09-23T11:31:40,557 adding 'pysam/include/samtools/consensus_pileup.c.pysam.c' 2023-09-23T11:31:40,558 adding 'pysam/include/samtools/consensus_pileup.h' 2023-09-23T11:31:40,562 adding 'pysam/include/samtools/coverage.c' 2023-09-23T11:31:40,565 adding 'pysam/include/samtools/coverage.c.pysam.c' 2023-09-23T11:31:40,568 adding 'pysam/include/samtools/cram_size.c' 2023-09-23T11:31:40,571 adding 'pysam/include/samtools/cram_size.c.pysam.c' 2023-09-23T11:31:40,573 adding 'pysam/include/samtools/cut_target.c' 2023-09-23T11:31:40,575 adding 'pysam/include/samtools/cut_target.c.pysam.c' 2023-09-23T11:31:40,576 adding 'pysam/include/samtools/dict.c' 2023-09-23T11:31:40,578 adding 'pysam/include/samtools/dict.c.pysam.c' 2023-09-23T11:31:40,580 adding 'pysam/include/samtools/faidx.c' 2023-09-23T11:31:40,583 adding 'pysam/include/samtools/faidx.c.pysam.c' 2023-09-23T11:31:40,586 adding 'pysam/include/samtools/padding.c' 2023-09-23T11:31:40,589 adding 'pysam/include/samtools/padding.c.pysam.c' 2023-09-23T11:31:40,593 adding 'pysam/include/samtools/phase.c' 2023-09-23T11:31:40,597 adding 'pysam/include/samtools/phase.c.pysam.c' 2023-09-23T11:31:40,600 adding 'pysam/include/samtools/reference.c' 2023-09-23T11:31:40,602 adding 'pysam/include/samtools/reference.c.pysam.c' 2023-09-23T11:31:40,605 adding 'pysam/include/samtools/reset.c' 2023-09-23T11:31:40,608 adding 'pysam/include/samtools/reset.c.pysam.c' 2023-09-23T11:31:40,610 adding 'pysam/include/samtools/sam_opts.c' 2023-09-23T11:31:40,611 adding 'pysam/include/samtools/sam_opts.c.pysam.c' 2023-09-23T11:31:40,613 adding 'pysam/include/samtools/sam_opts.h' 2023-09-23T11:31:40,614 adding 'pysam/include/samtools/sam_utils.c' 2023-09-23T11:31:40,616 adding 'pysam/include/samtools/sam_utils.c.pysam.c' 2023-09-23T11:31:40,617 adding 'pysam/include/samtools/sam_utils.h' 2023-09-23T11:31:40,624 adding 'pysam/include/samtools/sam_view.c' 2023-09-23T11:31:40,631 adding 'pysam/include/samtools/sam_view.c.pysam.c' 2023-09-23T11:31:40,633 adding 'pysam/include/samtools/sample.c' 2023-09-23T11:31:40,634 adding 'pysam/include/samtools/sample.c.pysam.c' 2023-09-23T11:31:40,635 adding 'pysam/include/samtools/sample.h' 2023-09-23T11:31:40,637 adding 'pysam/include/samtools/samtools.h' 2023-09-23T11:31:40,638 adding 'pysam/include/samtools/samtools.pysam.c' 2023-09-23T11:31:40,640 adding 'pysam/include/samtools/samtools.pysam.h' 2023-09-23T11:31:40,641 adding 'pysam/include/samtools/splaysort.h' 2023-09-23T11:31:40,653 adding 'pysam/include/samtools/stats.c' 2023-09-23T11:31:40,665 adding 'pysam/include/samtools/stats.c.pysam.c' 2023-09-23T11:31:40,668 adding 'pysam/include/samtools/stats_isize.c' 2023-09-23T11:31:40,670 adding 'pysam/include/samtools/stats_isize.c.pysam.c' 2023-09-23T11:31:40,671 adding 'pysam/include/samtools/stats_isize.h' 2023-09-23T11:31:40,673 adding 'pysam/include/samtools/tmp_file.c' 2023-09-23T11:31:40,675 adding 'pysam/include/samtools/tmp_file.c.pysam.c' 2023-09-23T11:31:40,677 adding 'pysam/include/samtools/tmp_file.h' 2023-09-23T11:31:40,678 adding 'pysam/include/samtools/version.sh' 2023-09-23T11:31:40,680 adding 'pysam/include/samtools/lz4/LICENSE' 2023-09-23T11:31:40,686 adding 'pysam/include/samtools/lz4/lz4.c' 2023-09-23T11:31:40,692 adding 'pysam/include/samtools/lz4/lz4.c.pysam.c' 2023-09-23T11:31:40,696 adding 'pysam/include/samtools/lz4/lz4.h' 2023-09-23T11:31:40,698 adding 'pysam-0.21.0.dist-info/AUTHORS' 2023-09-23T11:31:40,699 adding 'pysam-0.21.0.dist-info/COPYING' 2023-09-23T11:31:40,700 adding 'pysam-0.21.0.dist-info/METADATA' 2023-09-23T11:31:40,701 adding 'pysam-0.21.0.dist-info/WHEEL' 2023-09-23T11:31:40,702 adding 'pysam-0.21.0.dist-info/top_level.txt' 2023-09-23T11:31:40,709 adding 'pysam-0.21.0.dist-info/RECORD' 2023-09-23T11:31:40,888 removing build/bdist.linux-armv7l/wheel 2023-09-23T11:31:41,156 Building wheel for pysam (pyproject.toml): finished with status 'done' 2023-09-23T11:31:41,523 Created wheel for pysam: filename=pysam-0.21.0-cp311-cp311-linux_armv7l.whl size=16179463 sha256=528cb2c664f544f58a4e15ecb6d9e1c6bcfee699d56f0c438f627fa88e6a58d8 2023-09-23T11:31:41,524 Stored in directory: /tmp/pip-ephem-wheel-cache-w1imr9ub/wheels/52/2d/ed/b1e5c4ad36c535940dc1b1da900d05f571f88ff26f7be95f4c 2023-09-23T11:31:41,555 Successfully built pysam 2023-09-23T11:31:41,977 Removed build tracker: '/tmp/pip-build-tracker-3klu_h5m'