2023-09-24T00:23:41,020 Created temporary directory: /tmp/pip-build-tracker-t9sewpln 2023-09-24T00:23:41,021 Initialized build tracking at /tmp/pip-build-tracker-t9sewpln 2023-09-24T00:23:41,021 Created build tracker: /tmp/pip-build-tracker-t9sewpln 2023-09-24T00:23:41,022 Entered build tracker: /tmp/pip-build-tracker-t9sewpln 2023-09-24T00:23:41,022 Created temporary directory: /tmp/pip-wheel-ew31ojg4 2023-09-24T00:23:41,025 Created temporary directory: /tmp/pip-ephem-wheel-cache-en6jxpx4 2023-09-24T00:23:41,047 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-24T00:23:41,050 2 location(s) to search for versions of sparsesem: 2023-09-24T00:23:41,050 * https://pypi.org/simple/sparsesem/ 2023-09-24T00:23:41,050 * https://www.piwheels.org/simple/sparsesem/ 2023-09-24T00:23:41,051 Fetching project page and analyzing links: https://pypi.org/simple/sparsesem/ 2023-09-24T00:23:41,052 Getting page https://pypi.org/simple/sparsesem/ 2023-09-24T00:23:41,053 Found index url https://pypi.org/simple/ 2023-09-24T00:23:41,305 Fetched page https://pypi.org/simple/sparsesem/ as application/vnd.pypi.simple.v1+json 2023-09-24T00:23:41,308 Skipping link: No binaries permitted for sparsesem: https://files.pythonhosted.org/packages/28/bf/ecaae6871258dfae1b301abb0b1db6b31cc664b14fecd39ba450853b1c2f/sparseSEM-1.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6) 2023-09-24T00:23:41,309 Found link https://files.pythonhosted.org/packages/07/50/b56fe69dcb5d94e7a9f20acea16588e30835a30116d25cd3496e05ae7f9b/sparseSEM-1.0.tar.gz (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6), version: 1.0 2023-09-24T00:23:41,310 Skipping link: No binaries permitted for sparsesem: https://files.pythonhosted.org/packages/98/5e/b029b5529389bff97775e70f0bc72c37ed3c927a2371900bc584d2f894a0/sparseSEM-1.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6) 2023-09-24T00:23:41,311 Found link https://files.pythonhosted.org/packages/75/29/7af0589feb4e3d7d9edd93b2800effadcbecf41cf275d28b053bd81e5daf/sparseSEM-1.1.tar.gz (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6), version: 1.1 2023-09-24T00:23:41,311 Skipping link: No binaries permitted for sparsesem: https://files.pythonhosted.org/packages/53/bc/44a2d84f0eb6596f619cfd120337d5ba31ac5607df529d20766a4a66b9e2/sparseSEM-2.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6) 2023-09-24T00:23:41,312 Found link https://files.pythonhosted.org/packages/18/c0/91a20e815164372250042b8dc422928b479d47ebe42c7aa1588e3021135f/sparseSEM-2.0.tar.gz (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6), version: 2.0 2023-09-24T00:23:41,313 Skipping link: No binaries permitted for sparsesem: https://files.pythonhosted.org/packages/e4/31/26b46723e17c3d34d964c9b9af1c5017d71711911bb71d2f2992f16a1003/sparseSEM-2.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6) 2023-09-24T00:23:41,314 Found link https://files.pythonhosted.org/packages/f0/40/663a718c54bfbffd201b56b1536a6bf30795912a49e5e6d77a8c3c6d1f01/sparseSEM-2.1.tar.gz (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6), version: 2.1 2023-09-24T00:23:41,315 Fetching project page and analyzing links: https://www.piwheels.org/simple/sparsesem/ 2023-09-24T00:23:41,315 Getting page https://www.piwheels.org/simple/sparsesem/ 2023-09-24T00:23:41,317 Found index url https://www.piwheels.org/simple/ 2023-09-24T00:23:41,477 Fetched page https://www.piwheels.org/simple/sparsesem/ as text/html 2023-09-24T00:23:41,479 Skipping link: not a file: https://www.piwheels.org/simple/sparsesem/ 2023-09-24T00:23:41,479 Skipping link: not a file: https://pypi.org/simple/sparsesem/ 2023-09-24T00:23:41,498 Given no hashes to check 1 links for project 'sparsesem': discarding no candidates 2023-09-24T00:23:41,516 Collecting sparsesem==1.0 2023-09-24T00:23:41,518 Created temporary directory: /tmp/pip-unpack-yonee1c5 2023-09-24T00:23:42,282 Downloading sparseSEM-1.0.tar.gz (4.8 MB) 2023-09-24T00:23:43,501 Added sparsesem==1.0 from https://files.pythonhosted.org/packages/07/50/b56fe69dcb5d94e7a9f20acea16588e30835a30116d25cd3496e05ae7f9b/sparseSEM-1.0.tar.gz to build tracker '/tmp/pip-build-tracker-t9sewpln' 2023-09-24T00:23:43,503 Running setup.py (path:/tmp/pip-wheel-ew31ojg4/sparsesem_0ff30adf34a24e6eb05ae202408cd8be/setup.py) egg_info for package sparsesem 2023-09-24T00:23:43,504 Created temporary directory: /tmp/pip-pip-egg-info-01us0jfr 2023-09-24T00:23:43,504 Preparing metadata (setup.py): started 2023-09-24T00:23:43,505 Running command python setup.py egg_info 2023-09-24T00:23:44,169 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-24T00:23:44,169 !! 2023-09-24T00:23:44,170 ******************************************************************************** 2023-09-24T00:23:44,171 Requirements should be satisfied by a PEP 517 installer. 2023-09-24T00:23:44,171 If you are using pip, you can try `pip install --use-pep517`. 2023-09-24T00:23:44,172 ******************************************************************************** 2023-09-24T00:23:44,173 !! 2023-09-24T00:23:44,173 dist.fetch_build_eggs(dist.setup_requires) 2023-09-24T00:23:44,519 running egg_info 2023-09-24T00:23:44,520 creating /tmp/pip-pip-egg-info-01us0jfr/sparseSEM.egg-info 2023-09-24T00:23:44,543 writing /tmp/pip-pip-egg-info-01us0jfr/sparseSEM.egg-info/PKG-INFO 2023-09-24T00:23:44,546 writing dependency_links to /tmp/pip-pip-egg-info-01us0jfr/sparseSEM.egg-info/dependency_links.txt 2023-09-24T00:23:44,548 writing requirements to /tmp/pip-pip-egg-info-01us0jfr/sparseSEM.egg-info/requires.txt 2023-09-24T00:23:44,549 writing top-level names to /tmp/pip-pip-egg-info-01us0jfr/sparseSEM.egg-info/top_level.txt 2023-09-24T00:23:44,550 writing manifest file '/tmp/pip-pip-egg-info-01us0jfr/sparseSEM.egg-info/SOURCES.txt' 2023-09-24T00:23:44,650 reading manifest file '/tmp/pip-pip-egg-info-01us0jfr/sparseSEM.egg-info/SOURCES.txt' 2023-09-24T00:23:44,651 reading manifest template 'MANIFEST.in' 2023-09-24T00:23:44,656 writing manifest file '/tmp/pip-pip-egg-info-01us0jfr/sparseSEM.egg-info/SOURCES.txt' 2023-09-24T00:23:44,766 Preparing metadata (setup.py): finished with status 'done' 2023-09-24T00:23:44,770 Source in /tmp/pip-wheel-ew31ojg4/sparsesem_0ff30adf34a24e6eb05ae202408cd8be has version 1.0, which satisfies requirement sparsesem==1.0 from https://files.pythonhosted.org/packages/07/50/b56fe69dcb5d94e7a9f20acea16588e30835a30116d25cd3496e05ae7f9b/sparseSEM-1.0.tar.gz 2023-09-24T00:23:44,771 Removed sparsesem==1.0 from https://files.pythonhosted.org/packages/07/50/b56fe69dcb5d94e7a9f20acea16588e30835a30116d25cd3496e05ae7f9b/sparseSEM-1.0.tar.gz from build tracker '/tmp/pip-build-tracker-t9sewpln' 2023-09-24T00:23:44,777 Created temporary directory: /tmp/pip-unpack-5z5jcn0p 2023-09-24T00:23:44,778 Created temporary directory: /tmp/pip-unpack-325wkvy8 2023-09-24T00:23:44,784 Building wheels for collected packages: sparsesem 2023-09-24T00:23:44,788 Created temporary directory: /tmp/pip-wheel-b00l7ov5 2023-09-24T00:23:44,789 Building wheel for sparsesem (setup.py): started 2023-09-24T00:23:44,790 Destination directory: /tmp/pip-wheel-b00l7ov5 2023-09-24T00:23:44,790 Running command python setup.py bdist_wheel 2023-09-24T00:23:45,451 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-24T00:23:45,452 !! 2023-09-24T00:23:45,453 ******************************************************************************** 2023-09-24T00:23:45,453 Requirements should be satisfied by a PEP 517 installer. 2023-09-24T00:23:45,454 If you are using pip, you can try `pip install --use-pep517`. 2023-09-24T00:23:45,455 ******************************************************************************** 2023-09-24T00:23:45,456 !! 2023-09-24T00:23:45,456 dist.fetch_build_eggs(dist.setup_requires) 2023-09-24T00:23:45,813 running bdist_wheel 2023-09-24T00:23:45,906 running build 2023-09-24T00:23:45,906 running build_py 2023-09-24T00:23:45,932 creating build 2023-09-24T00:23:45,933 creating build/lib.linux-armv7l-cpython-311 2023-09-24T00:23:45,933 creating build/lib.linux-armv7l-cpython-311/sparseSEM 2023-09-24T00:23:45,934 copying sparseSEM/elasticNetSMLcv.py -> build/lib.linux-armv7l-cpython-311/sparseSEM 2023-09-24T00:23:45,937 copying sparseSEM/__init__.py -> build/lib.linux-armv7l-cpython-311/sparseSEM 2023-09-24T00:23:45,938 copying sparseSEM/elasticNetSMLpoint.py -> build/lib.linux-armv7l-cpython-311/sparseSEM 2023-09-24T00:23:45,940 copying sparseSEM/elasticNetSML.py -> build/lib.linux-armv7l-cpython-311/sparseSEM 2023-09-24T00:23:45,942 copying sparseSEM/loadSEMlib.py -> build/lib.linux-armv7l-cpython-311/sparseSEM 2023-09-24T00:23:45,943 running egg_info 2023-09-24T00:23:45,989 writing sparseSEM.egg-info/PKG-INFO 2023-09-24T00:23:45,994 writing dependency_links to sparseSEM.egg-info/dependency_links.txt 2023-09-24T00:23:45,996 writing requirements to sparseSEM.egg-info/requires.txt 2023-09-24T00:23:45,997 writing top-level names to sparseSEM.egg-info/top_level.txt 2023-09-24T00:23:46,024 reading manifest file 'sparseSEM.egg-info/SOURCES.txt' 2023-09-24T00:23:46,027 reading manifest template 'MANIFEST.in' 2023-09-24T00:23:46,031 writing manifest file 'sparseSEM.egg-info/SOURCES.txt' 2023-09-24T00:23:46,034 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'sparseSEM.src' is absent from the `packages` configuration. 2023-09-24T00:23:46,034 !! 2023-09-24T00:23:46,035 ******************************************************************************** 2023-09-24T00:23:46,036 ############################ 2023-09-24T00:23:46,036 # Package would be ignored # 2023-09-24T00:23:46,037 ############################ 2023-09-24T00:23:46,038 Python recognizes 'sparseSEM.src' as an importable package[^1], 2023-09-24T00:23:46,039 but it is absent from setuptools' `packages` configuration. 2023-09-24T00:23:46,040 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-24T00:23:46,040 package, please make sure that 'sparseSEM.src' is explicitly added 2023-09-24T00:23:46,041 to the `packages` configuration field. 2023-09-24T00:23:46,042 Alternatively, you can also rely on setuptools' discovery methods 2023-09-24T00:23:46,042 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-24T00:23:46,044 instead of `find_packages(...)`/`find:`). 2023-09-24T00:23:46,045 You can read more about "package discovery" on setuptools documentation page: 2023-09-24T00:23:46,046 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-24T00:23:46,047 If you don't want 'sparseSEM.src' to be distributed and are 2023-09-24T00:23:46,047 already explicitly excluding 'sparseSEM.src' via 2023-09-24T00:23:46,048 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-24T00:23:46,048 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-24T00:23:46,049 combination with a more fine grained `package-data` configuration. 2023-09-24T00:23:46,051 You can read more about "package data files" on setuptools documentation page: 2023-09-24T00:23:46,052 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-24T00:23:46,054 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-24T00:23:46,054 even if it does not contain any `.py` files. 2023-09-24T00:23:46,055 On the other hand, currently there is no concept of package data 2023-09-24T00:23:46,055 directory, all directories are treated like packages. 2023-09-24T00:23:46,056 ******************************************************************************** 2023-09-24T00:23:46,057 !! 2023-09-24T00:23:46,057 check.warn(importable) 2023-09-24T00:23:46,058 copying sparseSEM/sparseSEM.cpython-310-darwin.so -> build/lib.linux-armv7l-cpython-311/sparseSEM 2023-09-24T00:23:46,058 creating build/lib.linux-armv7l-cpython-311/sparseSEM/src 2023-09-24T00:23:46,059 copying sparseSEM/src/lassoSEM.c -> build/lib.linux-armv7l-cpython-311/sparseSEM/src 2023-09-24T00:23:46,059 copying sparseSEM/src/lassoSEM.h -> build/lib.linux-armv7l-cpython-311/sparseSEM/src 2023-09-24T00:23:46,059 copying sparseSEM/src/lassoSMLv11beta.c -> build/lib.linux-armv7l-cpython-311/sparseSEM/src 2023-09-24T00:23:46,060 running build_ext 2023-09-24T00:23:46,558 building 'sparseSEM' extension 2023-09-24T00:23:46,559 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -L/opt/intel/oneapi/mkl/2023.1.0/lib -L/usr/lib/arm-linux-gnueabihf -lmkl_rt -o build/lib.linux-armv7l-cpython-311/sparseSEM.cpython-311-arm-linux-gnueabihf.so 2023-09-24T00:23:46,583 /usr/bin/ld: cannot find -lmkl_rt: No such file or directory 2023-09-24T00:23:46,596 collect2: error: ld returned 1 exit status 2023-09-24T00:23:46,598 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-24T00:23:46,741 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-24T00:23:46,754 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-24T00:23:46,754 exec(compile('"'"''"'"''"'"' 2023-09-24T00:23:46,754 # This is -- a caller that pip uses to run setup.py 2023-09-24T00:23:46,754 # 2023-09-24T00:23:46,754 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-24T00:23:46,754 # import from `distutils.core` to work with newer packaging standards. 2023-09-24T00:23:46,754 # - It provides a clear error message when setuptools is not installed. 2023-09-24T00:23:46,754 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-24T00:23:46,754 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-24T00:23:46,754 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-24T00:23:46,754 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-24T00:23:46,754 import os, sys, tokenize 2023-09-24T00:23:46,754 2023-09-24T00:23:46,754 try: 2023-09-24T00:23:46,754 import setuptools 2023-09-24T00:23:46,754 except ImportError as error: 2023-09-24T00:23:46,754 print( 2023-09-24T00:23:46,754 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-24T00:23:46,754 "the build environment.", 2023-09-24T00:23:46,754 file=sys.stderr, 2023-09-24T00:23:46,754 ) 2023-09-24T00:23:46,754 sys.exit(1) 2023-09-24T00:23:46,754 2023-09-24T00:23:46,754 __file__ = %r 2023-09-24T00:23:46,754 sys.argv[0] = __file__ 2023-09-24T00:23:46,754 2023-09-24T00:23:46,754 if os.path.exists(__file__): 2023-09-24T00:23:46,754 filename = __file__ 2023-09-24T00:23:46,754 with tokenize.open(__file__) as f: 2023-09-24T00:23:46,754 setup_py_code = f.read() 2023-09-24T00:23:46,754 else: 2023-09-24T00:23:46,754 filename = "" 2023-09-24T00:23:46,754 setup_py_code = "from setuptools import setup; setup()" 2023-09-24T00:23:46,754 2023-09-24T00:23:46,754 exec(compile(setup_py_code, filename, "exec")) 2023-09-24T00:23:46,754 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-ew31ojg4/sparsesem_0ff30adf34a24e6eb05ae202408cd8be/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-b00l7ov5[/] 2023-09-24T00:23:46,755 [bold magenta]cwd[/]: /tmp/pip-wheel-ew31ojg4/sparsesem_0ff30adf34a24e6eb05ae202408cd8be/ 2023-09-24T00:23:46,755 Building wheel for sparsesem (setup.py): finished with status 'error' 2023-09-24T00:23:46,757 ERROR: Failed building wheel for sparsesem 2023-09-24T00:23:46,758 Running setup.py clean for sparsesem 2023-09-24T00:23:46,759 Running command python setup.py clean 2023-09-24T00:23:47,442 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-24T00:23:47,442 !! 2023-09-24T00:23:47,443 ******************************************************************************** 2023-09-24T00:23:47,444 Requirements should be satisfied by a PEP 517 installer. 2023-09-24T00:23:47,444 If you are using pip, you can try `pip install --use-pep517`. 2023-09-24T00:23:47,445 ******************************************************************************** 2023-09-24T00:23:47,445 !! 2023-09-24T00:23:47,446 dist.fetch_build_eggs(dist.setup_requires) 2023-09-24T00:23:47,803 running clean 2023-09-24T00:23:47,851 removing 'build/lib.linux-armv7l-cpython-311' (and everything under it) 2023-09-24T00:23:47,856 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-09-24T00:23:47,856 'build/scripts-3.11' does not exist -- can't clean it 2023-09-24T00:23:47,857 removing 'build' 2023-09-24T00:23:47,967 Failed to build sparsesem 2023-09-24T00:23:47,969 ERROR: Failed to build one or more wheels 2023-09-24T00:23:47,970 Exception information: 2023-09-24T00:23:47,970 Traceback (most recent call last): 2023-09-24T00:23:47,970 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-24T00:23:47,970 status = run_func(*args) 2023-09-24T00:23:47,970 ^^^^^^^^^^^^^^^ 2023-09-24T00:23:47,970 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-24T00:23:47,970 return func(self, options, args) 2023-09-24T00:23:47,970 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-24T00:23:47,970 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-24T00:23:47,970 raise CommandError("Failed to build one or more wheels") 2023-09-24T00:23:47,970 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-24T00:23:47,973 Removed build tracker: '/tmp/pip-build-tracker-t9sewpln'