2023-09-24T09:43:05,755 Created temporary directory: /tmp/pip-build-tracker-5p418flw 2023-09-24T09:43:05,756 Initialized build tracking at /tmp/pip-build-tracker-5p418flw 2023-09-24T09:43:05,756 Created build tracker: /tmp/pip-build-tracker-5p418flw 2023-09-24T09:43:05,757 Entered build tracker: /tmp/pip-build-tracker-5p418flw 2023-09-24T09:43:05,757 Created temporary directory: /tmp/pip-wheel-x9i2iksp 2023-09-24T09:43:05,761 Created temporary directory: /tmp/pip-ephem-wheel-cache-njlo6sgn 2023-09-24T09:43:05,783 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-24T09:43:05,787 2 location(s) to search for versions of sparsesem: 2023-09-24T09:43:05,787 * https://pypi.org/simple/sparsesem/ 2023-09-24T09:43:05,787 * https://www.piwheels.org/simple/sparsesem/ 2023-09-24T09:43:05,788 Fetching project page and analyzing links: https://pypi.org/simple/sparsesem/ 2023-09-24T09:43:05,788 Getting page https://pypi.org/simple/sparsesem/ 2023-09-24T09:43:05,790 Found index url https://pypi.org/simple/ 2023-09-24T09:43:06,009 Fetched page https://pypi.org/simple/sparsesem/ as application/vnd.pypi.simple.v1+json 2023-09-24T09:43:06,012 Skipping link: No binaries permitted for sparsesem: https://files.pythonhosted.org/packages/28/bf/ecaae6871258dfae1b301abb0b1db6b31cc664b14fecd39ba450853b1c2f/sparseSEM-1.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6) 2023-09-24T09:43:06,013 Found link https://files.pythonhosted.org/packages/07/50/b56fe69dcb5d94e7a9f20acea16588e30835a30116d25cd3496e05ae7f9b/sparseSEM-1.0.tar.gz (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6), version: 1.0 2023-09-24T09:43:06,014 Skipping link: No binaries permitted for sparsesem: https://files.pythonhosted.org/packages/98/5e/b029b5529389bff97775e70f0bc72c37ed3c927a2371900bc584d2f894a0/sparseSEM-1.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6) 2023-09-24T09:43:06,015 Found link https://files.pythonhosted.org/packages/75/29/7af0589feb4e3d7d9edd93b2800effadcbecf41cf275d28b053bd81e5daf/sparseSEM-1.1.tar.gz (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6), version: 1.1 2023-09-24T09:43:06,015 Skipping link: No binaries permitted for sparsesem: https://files.pythonhosted.org/packages/53/bc/44a2d84f0eb6596f619cfd120337d5ba31ac5607df529d20766a4a66b9e2/sparseSEM-2.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6) 2023-09-24T09:43:06,016 Found link https://files.pythonhosted.org/packages/18/c0/91a20e815164372250042b8dc422928b479d47ebe42c7aa1588e3021135f/sparseSEM-2.0.tar.gz (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6), version: 2.0 2023-09-24T09:43:06,017 Skipping link: No binaries permitted for sparsesem: https://files.pythonhosted.org/packages/e4/31/26b46723e17c3d34d964c9b9af1c5017d71711911bb71d2f2992f16a1003/sparseSEM-2.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6) 2023-09-24T09:43:06,018 Found link https://files.pythonhosted.org/packages/f0/40/663a718c54bfbffd201b56b1536a6bf30795912a49e5e6d77a8c3c6d1f01/sparseSEM-2.1.tar.gz (from https://pypi.org/simple/sparsesem/) (requires-python:>=3.6), version: 2.1 2023-09-24T09:43:06,019 Fetching project page and analyzing links: https://www.piwheels.org/simple/sparsesem/ 2023-09-24T09:43:06,019 Getting page https://www.piwheels.org/simple/sparsesem/ 2023-09-24T09:43:06,021 Found index url https://www.piwheels.org/simple/ 2023-09-24T09:43:06,178 Fetched page https://www.piwheels.org/simple/sparsesem/ as text/html 2023-09-24T09:43:06,179 Skipping link: not a file: https://www.piwheels.org/simple/sparsesem/ 2023-09-24T09:43:06,180 Skipping link: not a file: https://pypi.org/simple/sparsesem/ 2023-09-24T09:43:06,198 Given no hashes to check 1 links for project 'sparsesem': discarding no candidates 2023-09-24T09:43:06,216 Collecting sparsesem==1.1 2023-09-24T09:43:06,218 Created temporary directory: /tmp/pip-unpack-7dxyn3nx 2023-09-24T09:43:06,495 Downloading sparseSEM-1.1.tar.gz (4.8 MB) 2023-09-24T09:43:07,879 Added sparsesem==1.1 from https://files.pythonhosted.org/packages/75/29/7af0589feb4e3d7d9edd93b2800effadcbecf41cf275d28b053bd81e5daf/sparseSEM-1.1.tar.gz to build tracker '/tmp/pip-build-tracker-5p418flw' 2023-09-24T09:43:07,881 Running setup.py (path:/tmp/pip-wheel-x9i2iksp/sparsesem_b6ded495194a4e178753903163423ec6/setup.py) egg_info for package sparsesem 2023-09-24T09:43:07,882 Created temporary directory: /tmp/pip-pip-egg-info-tzolr4b1 2023-09-24T09:43:07,883 Preparing metadata (setup.py): started 2023-09-24T09:43:07,884 Running command python setup.py egg_info 2023-09-24T09:43:08,581 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-24T09:43:08,581 !! 2023-09-24T09:43:08,582 ******************************************************************************** 2023-09-24T09:43:08,583 Requirements should be satisfied by a PEP 517 installer. 2023-09-24T09:43:08,583 If you are using pip, you can try `pip install --use-pep517`. 2023-09-24T09:43:08,583 ******************************************************************************** 2023-09-24T09:43:08,584 !! 2023-09-24T09:43:08,585 dist.fetch_build_eggs(dist.setup_requires) 2023-09-24T09:43:08,936 running egg_info 2023-09-24T09:43:08,938 creating /tmp/pip-pip-egg-info-tzolr4b1/sparseSEM.egg-info 2023-09-24T09:43:08,961 writing /tmp/pip-pip-egg-info-tzolr4b1/sparseSEM.egg-info/PKG-INFO 2023-09-24T09:43:08,964 writing dependency_links to /tmp/pip-pip-egg-info-tzolr4b1/sparseSEM.egg-info/dependency_links.txt 2023-09-24T09:43:08,966 writing requirements to /tmp/pip-pip-egg-info-tzolr4b1/sparseSEM.egg-info/requires.txt 2023-09-24T09:43:08,967 writing top-level names to /tmp/pip-pip-egg-info-tzolr4b1/sparseSEM.egg-info/top_level.txt 2023-09-24T09:43:08,969 writing manifest file '/tmp/pip-pip-egg-info-tzolr4b1/sparseSEM.egg-info/SOURCES.txt' 2023-09-24T09:43:09,069 reading manifest file '/tmp/pip-pip-egg-info-tzolr4b1/sparseSEM.egg-info/SOURCES.txt' 2023-09-24T09:43:09,071 reading manifest template 'MANIFEST.in' 2023-09-24T09:43:09,076 writing manifest file '/tmp/pip-pip-egg-info-tzolr4b1/sparseSEM.egg-info/SOURCES.txt' 2023-09-24T09:43:09,185 Preparing metadata (setup.py): finished with status 'done' 2023-09-24T09:43:09,189 Source in /tmp/pip-wheel-x9i2iksp/sparsesem_b6ded495194a4e178753903163423ec6 has version 1.1, which satisfies requirement sparsesem==1.1 from https://files.pythonhosted.org/packages/75/29/7af0589feb4e3d7d9edd93b2800effadcbecf41cf275d28b053bd81e5daf/sparseSEM-1.1.tar.gz 2023-09-24T09:43:09,190 Removed sparsesem==1.1 from https://files.pythonhosted.org/packages/75/29/7af0589feb4e3d7d9edd93b2800effadcbecf41cf275d28b053bd81e5daf/sparseSEM-1.1.tar.gz from build tracker '/tmp/pip-build-tracker-5p418flw' 2023-09-24T09:43:09,196 Created temporary directory: /tmp/pip-unpack-5u5bepu_ 2023-09-24T09:43:09,197 Created temporary directory: /tmp/pip-unpack-5felcvfp 2023-09-24T09:43:09,204 Building wheels for collected packages: sparsesem 2023-09-24T09:43:09,208 Created temporary directory: /tmp/pip-wheel-aeoxojns 2023-09-24T09:43:09,208 Building wheel for sparsesem (setup.py): started 2023-09-24T09:43:09,209 Destination directory: /tmp/pip-wheel-aeoxojns 2023-09-24T09:43:09,210 Running command python setup.py bdist_wheel 2023-09-24T09:43:09,872 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-24T09:43:09,872 !! 2023-09-24T09:43:09,874 ******************************************************************************** 2023-09-24T09:43:09,874 Requirements should be satisfied by a PEP 517 installer. 2023-09-24T09:43:09,875 If you are using pip, you can try `pip install --use-pep517`. 2023-09-24T09:43:09,876 ******************************************************************************** 2023-09-24T09:43:09,877 !! 2023-09-24T09:43:09,878 dist.fetch_build_eggs(dist.setup_requires) 2023-09-24T09:43:10,442 running bdist_wheel 2023-09-24T09:43:10,534 running build 2023-09-24T09:43:10,534 running build_py 2023-09-24T09:43:10,560 creating build 2023-09-24T09:43:10,561 creating build/lib.linux-armv7l-cpython-311 2023-09-24T09:43:10,562 creating build/lib.linux-armv7l-cpython-311/sparseSEM 2023-09-24T09:43:10,563 copying sparseSEM/elasticNetSMLcv.py -> build/lib.linux-armv7l-cpython-311/sparseSEM 2023-09-24T09:43:10,566 copying sparseSEM/loadSEMlib.py -> build/lib.linux-armv7l-cpython-311/sparseSEM 2023-09-24T09:43:10,567 copying sparseSEM/elasticNetSMLpoint.py -> build/lib.linux-armv7l-cpython-311/sparseSEM 2023-09-24T09:43:10,569 copying sparseSEM/__init__.py -> build/lib.linux-armv7l-cpython-311/sparseSEM 2023-09-24T09:43:10,571 copying sparseSEM/elasticNetSML.py -> build/lib.linux-armv7l-cpython-311/sparseSEM 2023-09-24T09:43:10,573 running egg_info 2023-09-24T09:43:10,618 writing sparseSEM.egg-info/PKG-INFO 2023-09-24T09:43:10,621 writing dependency_links to sparseSEM.egg-info/dependency_links.txt 2023-09-24T09:43:10,623 writing requirements to sparseSEM.egg-info/requires.txt 2023-09-24T09:43:10,624 writing top-level names to sparseSEM.egg-info/top_level.txt 2023-09-24T09:43:10,651 reading manifest file 'sparseSEM.egg-info/SOURCES.txt' 2023-09-24T09:43:10,654 reading manifest template 'MANIFEST.in' 2023-09-24T09:43:10,658 writing manifest file 'sparseSEM.egg-info/SOURCES.txt' 2023-09-24T09:43:10,660 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'sparseSEM.src' is absent from the `packages` configuration. 2023-09-24T09:43:10,661 !! 2023-09-24T09:43:10,662 ******************************************************************************** 2023-09-24T09:43:10,662 ############################ 2023-09-24T09:43:10,663 # Package would be ignored # 2023-09-24T09:43:10,664 ############################ 2023-09-24T09:43:10,665 Python recognizes 'sparseSEM.src' as an importable package[^1], 2023-09-24T09:43:10,666 but it is absent from setuptools' `packages` configuration. 2023-09-24T09:43:10,667 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-24T09:43:10,667 package, please make sure that 'sparseSEM.src' is explicitly added 2023-09-24T09:43:10,668 to the `packages` configuration field. 2023-09-24T09:43:10,669 Alternatively, you can also rely on setuptools' discovery methods 2023-09-24T09:43:10,669 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-24T09:43:10,670 instead of `find_packages(...)`/`find:`). 2023-09-24T09:43:10,671 You can read more about "package discovery" on setuptools documentation page: 2023-09-24T09:43:10,672 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-24T09:43:10,673 If you don't want 'sparseSEM.src' to be distributed and are 2023-09-24T09:43:10,674 already explicitly excluding 'sparseSEM.src' via 2023-09-24T09:43:10,674 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-24T09:43:10,675 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-24T09:43:10,675 combination with a more fine grained `package-data` configuration. 2023-09-24T09:43:10,676 You can read more about "package data files" on setuptools documentation page: 2023-09-24T09:43:10,677 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-24T09:43:10,680 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-24T09:43:10,680 even if it does not contain any `.py` files. 2023-09-24T09:43:10,681 On the other hand, currently there is no concept of package data 2023-09-24T09:43:10,681 directory, all directories are treated like packages. 2023-09-24T09:43:10,682 ******************************************************************************** 2023-09-24T09:43:10,683 !! 2023-09-24T09:43:10,683 check.warn(importable) 2023-09-24T09:43:10,684 copying sparseSEM/sparseSEM.cpython-310-darwin.so -> build/lib.linux-armv7l-cpython-311/sparseSEM 2023-09-24T09:43:10,684 creating build/lib.linux-armv7l-cpython-311/sparseSEM/src 2023-09-24T09:43:10,685 copying sparseSEM/src/lassoSEM.c -> build/lib.linux-armv7l-cpython-311/sparseSEM/src 2023-09-24T09:43:10,685 copying sparseSEM/src/lassoSEM.h -> build/lib.linux-armv7l-cpython-311/sparseSEM/src 2023-09-24T09:43:10,686 copying sparseSEM/src/lassoSMLv11beta.c -> build/lib.linux-armv7l-cpython-311/sparseSEM/src 2023-09-24T09:43:10,686 running build_ext 2023-09-24T09:43:11,196 building 'sparseSEM' extension 2023-09-24T09:43:11,196 creating build/temp.linux-armv7l-cpython-311 2023-09-24T09:43:11,197 creating build/temp.linux-armv7l-cpython-311/sparseSEM 2023-09-24T09:43:11,198 creating build/temp.linux-armv7l-cpython-311/sparseSEM/src 2023-09-24T09:43:11,199 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -IsparseSEM/src -I/opt/intel/oneapi/mkl/2023.1.0/include -I/usr/include/python3.11 -c sparseSEM/src/lassoSEM.c -o build/temp.linux-armv7l-cpython-311/sparseSEM/src/lassoSEM.o -std=c11 -O2 2023-09-24T09:43:11,302 sparseSEM/src/lassoSEM.c:5:10: fatal error: mkl.h: No such file or directory 2023-09-24T09:43:11,302 5 | #include "mkl.h" 2023-09-24T09:43:11,303 | ^~~~~~~ 2023-09-24T09:43:11,304 compilation terminated. 2023-09-24T09:43:11,306 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-24T09:43:11,449 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-24T09:43:11,462 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-24T09:43:11,462 exec(compile('"'"''"'"''"'"' 2023-09-24T09:43:11,462 # This is -- a caller that pip uses to run setup.py 2023-09-24T09:43:11,462 # 2023-09-24T09:43:11,462 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-24T09:43:11,462 # import from `distutils.core` to work with newer packaging standards. 2023-09-24T09:43:11,462 # - It provides a clear error message when setuptools is not installed. 2023-09-24T09:43:11,462 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-24T09:43:11,462 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-24T09:43:11,462 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-24T09:43:11,462 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-24T09:43:11,462 import os, sys, tokenize 2023-09-24T09:43:11,462 2023-09-24T09:43:11,462 try: 2023-09-24T09:43:11,462 import setuptools 2023-09-24T09:43:11,462 except ImportError as error: 2023-09-24T09:43:11,462 print( 2023-09-24T09:43:11,462 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-24T09:43:11,462 "the build environment.", 2023-09-24T09:43:11,462 file=sys.stderr, 2023-09-24T09:43:11,462 ) 2023-09-24T09:43:11,462 sys.exit(1) 2023-09-24T09:43:11,462 2023-09-24T09:43:11,462 __file__ = %r 2023-09-24T09:43:11,462 sys.argv[0] = __file__ 2023-09-24T09:43:11,462 2023-09-24T09:43:11,462 if os.path.exists(__file__): 2023-09-24T09:43:11,462 filename = __file__ 2023-09-24T09:43:11,462 with tokenize.open(__file__) as f: 2023-09-24T09:43:11,462 setup_py_code = f.read() 2023-09-24T09:43:11,462 else: 2023-09-24T09:43:11,462 filename = "" 2023-09-24T09:43:11,462 setup_py_code = "from setuptools import setup; setup()" 2023-09-24T09:43:11,462 2023-09-24T09:43:11,462 exec(compile(setup_py_code, filename, "exec")) 2023-09-24T09:43:11,462 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-x9i2iksp/sparsesem_b6ded495194a4e178753903163423ec6/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-aeoxojns[/] 2023-09-24T09:43:11,462 [bold magenta]cwd[/]: /tmp/pip-wheel-x9i2iksp/sparsesem_b6ded495194a4e178753903163423ec6/ 2023-09-24T09:43:11,463 Building wheel for sparsesem (setup.py): finished with status 'error' 2023-09-24T09:43:11,464 ERROR: Failed building wheel for sparsesem 2023-09-24T09:43:11,465 Running setup.py clean for sparsesem 2023-09-24T09:43:11,466 Running command python setup.py clean 2023-09-24T09:43:12,587 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-24T09:43:12,587 !! 2023-09-24T09:43:12,588 ******************************************************************************** 2023-09-24T09:43:12,588 Requirements should be satisfied by a PEP 517 installer. 2023-09-24T09:43:12,589 If you are using pip, you can try `pip install --use-pep517`. 2023-09-24T09:43:12,589 ******************************************************************************** 2023-09-24T09:43:12,590 !! 2023-09-24T09:43:12,591 dist.fetch_build_eggs(dist.setup_requires) 2023-09-24T09:43:12,940 running clean 2023-09-24T09:43:12,987 removing 'build/temp.linux-armv7l-cpython-311' (and everything under it) 2023-09-24T09:43:12,989 removing 'build/lib.linux-armv7l-cpython-311' (and everything under it) 2023-09-24T09:43:12,994 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-09-24T09:43:12,994 'build/scripts-3.11' does not exist -- can't clean it 2023-09-24T09:43:12,995 removing 'build' 2023-09-24T09:43:13,103 Failed to build sparsesem 2023-09-24T09:43:13,104 ERROR: Failed to build one or more wheels 2023-09-24T09:43:13,106 Exception information: 2023-09-24T09:43:13,106 Traceback (most recent call last): 2023-09-24T09:43:13,106 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-24T09:43:13,106 status = run_func(*args) 2023-09-24T09:43:13,106 ^^^^^^^^^^^^^^^ 2023-09-24T09:43:13,106 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-24T09:43:13,106 return func(self, options, args) 2023-09-24T09:43:13,106 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-24T09:43:13,106 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-24T09:43:13,106 raise CommandError("Failed to build one or more wheels") 2023-09-24T09:43:13,106 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-24T09:43:13,109 Removed build tracker: '/tmp/pip-build-tracker-5p418flw'