2023-09-24T09:57:57,458 Created temporary directory: /tmp/pip-build-tracker-zh0mff49 2023-09-24T09:57:57,459 Initialized build tracking at /tmp/pip-build-tracker-zh0mff49 2023-09-24T09:57:57,459 Created build tracker: /tmp/pip-build-tracker-zh0mff49 2023-09-24T09:57:57,460 Entered build tracker: /tmp/pip-build-tracker-zh0mff49 2023-09-24T09:57:57,461 Created temporary directory: /tmp/pip-wheel-gx1uhzyb 2023-09-24T09:57:57,464 Created temporary directory: /tmp/pip-ephem-wheel-cache-e4djhmns 2023-09-24T09:57:57,485 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-24T09:57:57,489 2 location(s) to search for versions of pmx-biobb: 2023-09-24T09:57:57,489 * https://pypi.org/simple/pmx-biobb/ 2023-09-24T09:57:57,489 * https://www.piwheels.org/simple/pmx-biobb/ 2023-09-24T09:57:57,490 Fetching project page and analyzing links: https://pypi.org/simple/pmx-biobb/ 2023-09-24T09:57:57,491 Getting page https://pypi.org/simple/pmx-biobb/ 2023-09-24T09:57:57,492 Found index url https://pypi.org/simple/ 2023-09-24T09:57:57,643 Fetched page https://pypi.org/simple/pmx-biobb/ as application/vnd.pypi.simple.v1+json 2023-09-24T09:57:57,648 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/ea/0e/652070bd7d0ca56047ee9da48bdce6ad248973b822b5fe7d931c07a93625/pmx_biobb-1.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:57:57,649 Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:57:57,650 Skipping link: 1.0.0 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:57:57,651 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/5b/2f2f6e34ed256b51485f1313f89aeb9647a2df056fad635dc6c69354a142/pmx_biobb-1.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:57:57,651 Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:57:57,652 Skipping link: 1.0.1 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:57:57,653 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/dc/26/88efc470b39ed04650850696ca8d4c1777e1f1788960a41b063c4f9f64cc/pmx_biobb-2.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,654 Found link https://files.pythonhosted.org/packages/32/7c/dd656cd2d785a7b9815e0ca54fb9bec35c258cdc058d9450726e65bc201c/pmx_biobb-2.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 2.0.0 2023-09-24T09:57:57,654 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/73/a2/51564515b8b81b725a8aa81b962e040e66d59ce4637be894cf02315fc403/pmx_biobb-3.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,655 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/e7/93/4fac73a6fe156e0940953662d457f0424e847a9546db1c10a7bbad5d3642/pmx_biobb-3.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,656 Found link https://files.pythonhosted.org/packages/3c/b8/7dcc8b482f02b8ff26aa1a9819fd389f9cc01087954d968e156a073ea4ac/pmx_biobb-3.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.1 2023-09-24T09:57:57,657 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/c4/2a/c00053a2535945c6900b99621be5c40437e939c64f36ea7d14e3bb5febbe/pmx_biobb-3.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,658 Found link https://files.pythonhosted.org/packages/8a/0b/e7b469ecf2b337e713cafe136f826f79709c9940a4d3a1eb00a669657af0/pmx_biobb-3.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.2 2023-09-24T09:57:57,658 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/8a/70/3744fd3fd4d13d0fcd04c50740aa9584ba6c5b7eb43e1a4dd65a7c223cf2/pmx_biobb-3.0.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,659 Found link https://files.pythonhosted.org/packages/6f/b2/61607c93aa5d3c34838e44ed7df748137d3b266a06a32b6d521a19ddedb4/pmx_biobb-3.0.3.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.3 2023-09-24T09:57:57,660 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/34/3e/e0a91c21ec82ca2108ec1f20c6f9fb0feb3e83b1d9277b2b521b43e77067/pmx_biobb-4.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,661 Found link https://files.pythonhosted.org/packages/d3/ee/61a98e8a9a4a1d5ab8ea32a2712cc1dfb3d7326a8404fcbd3347b28fab4d/pmx_biobb-4.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.0 2023-09-24T09:57:57,661 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/cf/d3/2cac189bd5b21c71cb79a57bf2f38121a2ecc930294758e3565302de7d21/pmx_biobb-4.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,662 Found link https://files.pythonhosted.org/packages/b9/64/0a7b31944dfae299db2a1da0949f82c4843cbc8ee4abb2f2b3f716d38640/pmx_biobb-4.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.1 2023-09-24T09:57:57,663 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/6d/c32f57cf60dce3b6835df798488a8e6980ca6e2865723f9e1c9551a8bff3/pmx_biobb-4.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,664 Found link https://files.pythonhosted.org/packages/1e/f1/377ebcaabe3ae496f4e58c434464cc6899d7a1a6287abea0ac19c9a84f38/pmx_biobb-4.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.2 2023-09-24T09:57:57,665 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/21/d8/92f5da41c0ccee7807122989b44711b075159e3129707c40a469a5333825/pmx_biobb-4.1.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,666 Found link https://files.pythonhosted.org/packages/de/e6/7e0419f8305191fb52c09e3f36db33fa8e37e029e6e2d0c361cb384cfefa/pmx_biobb-4.1.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.1.2 2023-09-24T09:57:57,666 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/8f/b7/67894a846ff237417e009dd532d744eff5fd675e98ccb50e27fda4c145e1/pmx_biobb-4.1.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,667 Found link https://files.pythonhosted.org/packages/ff/3a/d6a0cec96cc00189a683995a26e729c9d09e503129b35192923c46bd93ed/pmx_biobb-4.1.3.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.1.3 2023-09-24T09:57:57,668 Fetching project page and analyzing links: https://www.piwheels.org/simple/pmx-biobb/ 2023-09-24T09:57:57,669 Getting page https://www.piwheels.org/simple/pmx-biobb/ 2023-09-24T09:57:57,670 Found index url https://www.piwheels.org/simple/ 2023-09-24T09:57:57,828 Fetched page https://www.piwheels.org/simple/pmx-biobb/ as text/html 2023-09-24T09:57:57,839 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp39-cp39-linux_armv7l.whl#sha256=53bd7ffc22fe4dae9200c2f72b9650e77d4ab7809ecb0219685e7429222e7b43 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,840 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp39-cp39-linux_armv6l.whl#sha256=53bd7ffc22fe4dae9200c2f72b9650e77d4ab7809ecb0219685e7429222e7b43 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,840 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp37-cp37m-linux_armv7l.whl#sha256=49e6d6e858b81a9cb06fd1e8dfb1a6813af3e81f6f471e1473a782a4063ca3eb (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,841 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp37-cp37m-linux_armv6l.whl#sha256=49e6d6e858b81a9cb06fd1e8dfb1a6813af3e81f6f471e1473a782a4063ca3eb (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,841 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp39-cp39-linux_armv7l.whl#sha256=5cfda4f30e6f90d0f14fdd9d401fec01a00d3b528b9cd88614bc3161a158087a (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,842 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp39-cp39-linux_armv6l.whl#sha256=5cfda4f30e6f90d0f14fdd9d401fec01a00d3b528b9cd88614bc3161a158087a (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,842 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp37-cp37m-linux_armv7l.whl#sha256=c9442c9129d171b9470330209ab7822af7bdaeaaae306c2c891597b1267bfec5 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,843 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp37-cp37m-linux_armv6l.whl#sha256=c9442c9129d171b9470330209ab7822af7bdaeaaae306c2c891597b1267bfec5 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,844 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp39-cp39-linux_armv7l.whl#sha256=47ab27371c794d3c80f75be7a95551af23c6e6a52f55acc0bf15aca71c443d0b (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,844 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp39-cp39-linux_armv6l.whl#sha256=47ab27371c794d3c80f75be7a95551af23c6e6a52f55acc0bf15aca71c443d0b (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,845 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp37-cp37m-linux_armv7l.whl#sha256=dff92724f2cf8b25319328fe3e99d42581794b289ae551733a6615c659395b84 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,845 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp37-cp37m-linux_armv6l.whl#sha256=dff92724f2cf8b25319328fe3e99d42581794b289ae551733a6615c659395b84 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,846 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp39-cp39-linux_armv7l.whl#sha256=bd751f2807a45f17c0e9676ccda12b6edbbebf475c170e3ec27044838f1d5b82 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,846 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp39-cp39-linux_armv6l.whl#sha256=bd751f2807a45f17c0e9676ccda12b6edbbebf475c170e3ec27044838f1d5b82 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,847 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv7l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,848 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv6l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,848 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv7l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,849 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv6l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,849 Skipping link: No binaries permitted for pmx-biobb: 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https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp39-cp39-linux_armv6l.whl#sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,851 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv7l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,852 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv6l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,852 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv7l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,853 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv6l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,854 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv7l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,854 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv6l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,855 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv7l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,855 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv6l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,856 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv7l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,856 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv6l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,857 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,857 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,858 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,858 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:57:57,859 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:57:57,859 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:57:57,860 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:57:57,861 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:57:57,861 Skipping link: not a file: https://www.piwheels.org/simple/pmx-biobb/ 2023-09-24T09:57:57,862 Skipping link: not a file: https://pypi.org/simple/pmx-biobb/ 2023-09-24T09:57:57,881 Given no hashes to check 1 links for project 'pmx-biobb': discarding no candidates 2023-09-24T09:57:57,899 Collecting pmx-biobb==3.0.1 2023-09-24T09:57:57,902 Created temporary directory: /tmp/pip-unpack-3kjri2gr 2023-09-24T09:57:58,835 Downloading pmx_biobb-3.0.1.tar.gz (5.3 MB) 2023-09-24T09:58:01,950 Added pmx-biobb==3.0.1 from https://files.pythonhosted.org/packages/3c/b8/7dcc8b482f02b8ff26aa1a9819fd389f9cc01087954d968e156a073ea4ac/pmx_biobb-3.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-zh0mff49' 2023-09-24T09:58:01,952 Running setup.py (path:/tmp/pip-wheel-gx1uhzyb/pmx-biobb_99a6ef9708674c35a3a22963ea3c7902/setup.py) egg_info for package pmx-biobb 2023-09-24T09:58:01,953 Created temporary directory: /tmp/pip-pip-egg-info-iod8jb5z 2023-09-24T09:58:01,954 Preparing metadata (setup.py): started 2023-09-24T09:58:01,955 Running command python setup.py egg_info 2023-09-24T09:58:03,040 running egg_info 2023-09-24T09:58:03,042 creating /tmp/pip-pip-egg-info-iod8jb5z/pmx_biobb.egg-info 2023-09-24T09:58:03,065 writing /tmp/pip-pip-egg-info-iod8jb5z/pmx_biobb.egg-info/PKG-INFO 2023-09-24T09:58:03,069 writing dependency_links to /tmp/pip-pip-egg-info-iod8jb5z/pmx_biobb.egg-info/dependency_links.txt 2023-09-24T09:58:03,070 writing entry points to /tmp/pip-pip-egg-info-iod8jb5z/pmx_biobb.egg-info/entry_points.txt 2023-09-24T09:58:03,071 writing requirements to /tmp/pip-pip-egg-info-iod8jb5z/pmx_biobb.egg-info/requires.txt 2023-09-24T09:58:03,072 writing top-level names to /tmp/pip-pip-egg-info-iod8jb5z/pmx_biobb.egg-info/top_level.txt 2023-09-24T09:58:03,074 writing manifest file '/tmp/pip-pip-egg-info-iod8jb5z/pmx_biobb.egg-info/SOURCES.txt' 2023-09-24T09:58:03,146 reading manifest file '/tmp/pip-pip-egg-info-iod8jb5z/pmx_biobb.egg-info/SOURCES.txt' 2023-09-24T09:58:03,148 reading manifest template 'MANIFEST.in' 2023-09-24T09:58:03,168 adding license file 'LICENSE' 2023-09-24T09:58:03,179 writing manifest file '/tmp/pip-pip-egg-info-iod8jb5z/pmx_biobb.egg-info/SOURCES.txt' 2023-09-24T09:58:03,287 Preparing metadata (setup.py): finished with status 'done' 2023-09-24T09:58:03,291 Source in /tmp/pip-wheel-gx1uhzyb/pmx-biobb_99a6ef9708674c35a3a22963ea3c7902 has version 3.0.1, which satisfies requirement pmx-biobb==3.0.1 from https://files.pythonhosted.org/packages/3c/b8/7dcc8b482f02b8ff26aa1a9819fd389f9cc01087954d968e156a073ea4ac/pmx_biobb-3.0.1.tar.gz 2023-09-24T09:58:03,292 Removed pmx-biobb==3.0.1 from https://files.pythonhosted.org/packages/3c/b8/7dcc8b482f02b8ff26aa1a9819fd389f9cc01087954d968e156a073ea4ac/pmx_biobb-3.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-zh0mff49' 2023-09-24T09:58:03,298 Created temporary directory: /tmp/pip-unpack-ucb9m_v_ 2023-09-24T09:58:03,299 Created temporary directory: /tmp/pip-unpack-w636wlt1 2023-09-24T09:58:03,303 Building wheels for collected packages: pmx-biobb 2023-09-24T09:58:03,307 Created temporary directory: /tmp/pip-wheel-cbw1w_ls 2023-09-24T09:58:03,308 Building wheel for pmx-biobb (setup.py): started 2023-09-24T09:58:03,309 Destination directory: /tmp/pip-wheel-cbw1w_ls 2023-09-24T09:58:03,310 Running command python setup.py bdist_wheel 2023-09-24T09:58:04,299 running bdist_wheel 2023-09-24T09:58:04,389 running build 2023-09-24T09:58:04,389 running build_py 2023-09-24T09:58:04,393 creating build 2023-09-24T09:58:04,393 creating build/lib.linux-armv7l-cpython-311 2023-09-24T09:58:04,394 creating build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,395 copying src/pmx/atom.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,398 copying src/pmx/options.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,400 copying src/pmx/xdrfile.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,402 copying src/pmx/gmx.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,404 copying src/pmx/mutdb.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,406 copying src/pmx/forcefield.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,410 copying src/pmx/xtc.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,411 copying src/pmx/library.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,415 copying src/pmx/geometry.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,417 copying src/pmx/alchemy.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,420 copying src/pmx/ligand_alchemy.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,424 copying src/pmx/jobscript.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,426 copying src/pmx/rotamer.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,428 copying src/pmx/rosetta.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,431 copying src/pmx/chain.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,433 copying src/pmx/molecule.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,436 copying src/pmx/utils.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,438 copying src/pmx/estimators.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,441 copying src/pmx/model.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,443 copying src/pmx/analysis.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,446 copying src/pmx/ffparser.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,448 copying src/pmx/builder.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,450 copying src/pmx/parser.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,453 copying src/pmx/_version.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,454 copying src/pmx/ndx.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,456 copying src/pmx/__init__.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,458 copying src/pmx/rosetta_analyze.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,460 copying src/pmx/atomselection.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:58:04,462 running egg_info 2023-09-24T09:58:04,515 writing src/pmx_biobb.egg-info/PKG-INFO 2023-09-24T09:58:04,518 writing dependency_links to src/pmx_biobb.egg-info/dependency_links.txt 2023-09-24T09:58:04,519 writing entry points to src/pmx_biobb.egg-info/entry_points.txt 2023-09-24T09:58:04,521 writing requirements to src/pmx_biobb.egg-info/requires.txt 2023-09-24T09:58:04,522 writing top-level names to src/pmx_biobb.egg-info/top_level.txt 2023-09-24T09:58:04,549 reading manifest file 'src/pmx_biobb.egg-info/SOURCES.txt' 2023-09-24T09:58:04,557 reading manifest template 'MANIFEST.in' 2023-09-24T09:58:04,572 adding license file 'LICENSE' 2023-09-24T09:58:04,586 writing manifest file 'src/pmx_biobb.egg-info/SOURCES.txt' 2023-09-24T09:58:04,589 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.data' is absent from the `packages` configuration. 2023-09-24T09:58:04,590 !! 2023-09-24T09:58:04,591 ******************************************************************************** 2023-09-24T09:58:04,591 ############################ 2023-09-24T09:58:04,592 # Package would be ignored # 2023-09-24T09:58:04,593 ############################ 2023-09-24T09:58:04,593 Python recognizes 'pmx.data' as an importable package[^1], 2023-09-24T09:58:04,594 but it is absent from setuptools' `packages` configuration. 2023-09-24T09:58:04,595 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-24T09:58:04,596 package, please make sure that 'pmx.data' is explicitly added 2023-09-24T09:58:04,596 to the `packages` configuration field. 2023-09-24T09:58:04,597 Alternatively, you can also rely on setuptools' discovery methods 2023-09-24T09:58:04,597 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-24T09:58:04,598 instead of `find_packages(...)`/`find:`). 2023-09-24T09:58:04,598 You can read more about "package discovery" on setuptools documentation page: 2023-09-24T09:58:04,599 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-24T09:58:04,600 If you don't want 'pmx.data' to be distributed and are 2023-09-24T09:58:04,600 already explicitly excluding 'pmx.data' via 2023-09-24T09:58:04,601 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-24T09:58:04,601 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-24T09:58:04,602 combination with a more fine grained `package-data` configuration. 2023-09-24T09:58:04,602 You can read more about "package data files" on setuptools documentation page: 2023-09-24T09:58:04,603 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-24T09:58:04,604 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-24T09:58:04,605 even if it does not contain any `.py` files. 2023-09-24T09:58:04,605 On the other hand, currently there is no concept of package data 2023-09-24T09:58:04,606 directory, all directories are treated like packages. 2023-09-24T09:58:04,606 ******************************************************************************** 2023-09-24T09:58:04,607 !! 2023-09-24T09:58:04,608 check.warn(importable) 2023-09-24T09:58:04,609 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.data.mutff' is absent from the `packages` configuration. 2023-09-24T09:58:04,609 !! 2023-09-24T09:58:04,611 ******************************************************************************** 2023-09-24T09:58:04,611 ############################ 2023-09-24T09:58:04,612 # Package would be ignored # 2023-09-24T09:58:04,612 ############################ 2023-09-24T09:58:04,613 Python recognizes 'pmx.data.mutff' as an importable package[^1], 2023-09-24T09:58:04,613 but it is absent from setuptools' `packages` configuration. 2023-09-24T09:58:04,615 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-24T09:58:04,615 package, please make sure that 'pmx.data.mutff' is explicitly added 2023-09-24T09:58:04,615 to the `packages` configuration field. 2023-09-24T09:58:04,616 Alternatively, you can also rely on setuptools' discovery methods 2023-09-24T09:58:04,617 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-24T09:58:04,617 instead of `find_packages(...)`/`find:`). 2023-09-24T09:58:04,618 You can read more about "package discovery" on setuptools documentation page: 2023-09-24T09:58:04,619 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-24T09:58:04,620 If you don't want 'pmx.data.mutff' to be distributed and are 2023-09-24T09:58:04,621 already explicitly excluding 'pmx.data.mutff' via 2023-09-24T09:58:04,621 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-24T09:58:04,622 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-24T09:58:04,623 combination with a more fine grained `package-data` configuration. 2023-09-24T09:58:04,624 You can read more about "package data files" on setuptools documentation page: 2023-09-24T09:58:04,624 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-24T09:58:04,626 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-24T09:58:04,627 even if it does not contain any `.py` files. 2023-09-24T09:58:04,629 On the other hand, currently there is no concept of package data 2023-09-24T09:58:04,629 directory, all directories are treated like packages. 2023-09-24T09:58:04,630 ******************************************************************************** 2023-09-24T09:58:04,631 !! 2023-09-24T09:58:04,631 check.warn(importable) 2023-09-24T09:58:04,631 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.extensions.pmx' is absent from the `packages` configuration. 2023-09-24T09:58:04,632 !! 2023-09-24T09:58:04,634 ******************************************************************************** 2023-09-24T09:58:04,635 ############################ 2023-09-24T09:58:04,635 # Package would be ignored # 2023-09-24T09:58:04,636 ############################ 2023-09-24T09:58:04,636 Python recognizes 'pmx.extensions.pmx' as an importable package[^1], 2023-09-24T09:58:04,636 but it is absent from setuptools' `packages` configuration. 2023-09-24T09:58:04,637 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-24T09:58:04,638 package, please make sure that 'pmx.extensions.pmx' is explicitly added 2023-09-24T09:58:04,638 to the `packages` configuration field. 2023-09-24T09:58:04,640 Alternatively, you can also rely on setuptools' discovery methods 2023-09-24T09:58:04,640 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-24T09:58:04,641 instead of `find_packages(...)`/`find:`). 2023-09-24T09:58:04,642 You can read more about "package discovery" on setuptools documentation page: 2023-09-24T09:58:04,643 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-24T09:58:04,645 If you don't want 'pmx.extensions.pmx' to be distributed and are 2023-09-24T09:58:04,645 already explicitly excluding 'pmx.extensions.pmx' via 2023-09-24T09:58:04,646 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-24T09:58:04,647 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-24T09:58:04,647 combination with a more fine grained `package-data` configuration. 2023-09-24T09:58:04,649 You can read more about "package data files" on setuptools documentation page: 2023-09-24T09:58:04,650 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-24T09:58:04,651 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-24T09:58:04,652 even if it does not contain any `.py` files. 2023-09-24T09:58:04,653 On the other hand, currently there is no concept of package data 2023-09-24T09:58:04,653 directory, all directories are treated like packages. 2023-09-24T09:58:04,654 ******************************************************************************** 2023-09-24T09:58:04,655 !! 2023-09-24T09:58:04,655 check.warn(importable) 2023-09-24T09:58:04,656 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.extensions.xdr' is absent from the `packages` configuration. 2023-09-24T09:58:04,657 !! 2023-09-24T09:58:04,658 ******************************************************************************** 2023-09-24T09:58:04,659 ############################ 2023-09-24T09:58:04,659 # Package would be ignored # 2023-09-24T09:58:04,660 ############################ 2023-09-24T09:58:04,661 Python recognizes 'pmx.extensions.xdr' as an importable package[^1], 2023-09-24T09:58:04,661 but it is absent from setuptools' `packages` configuration. 2023-09-24T09:58:04,662 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-24T09:58:04,663 package, please make sure that 'pmx.extensions.xdr' is explicitly added 2023-09-24T09:58:04,663 to the `packages` configuration field. 2023-09-24T09:58:04,664 Alternatively, you can also rely on setuptools' discovery methods 2023-09-24T09:58:04,664 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-24T09:58:04,665 instead of `find_packages(...)`/`find:`). 2023-09-24T09:58:04,666 You can read more about "package discovery" on setuptools documentation page: 2023-09-24T09:58:04,667 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-24T09:58:04,668 If you don't want 'pmx.extensions.xdr' to be distributed and are 2023-09-24T09:58:04,668 already explicitly excluding 'pmx.extensions.xdr' via 2023-09-24T09:58:04,668 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-24T09:58:04,669 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-24T09:58:04,669 combination with a more fine grained `package-data` configuration. 2023-09-24T09:58:04,670 You can read more about "package data files" on setuptools documentation page: 2023-09-24T09:58:04,671 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-24T09:58:04,673 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-24T09:58:04,674 even if it does not contain any `.py` files. 2023-09-24T09:58:04,674 On the other hand, currently there is no concept of package data 2023-09-24T09:58:04,675 directory, all directories are treated like packages. 2023-09-24T09:58:04,676 ******************************************************************************** 2023-09-24T09:58:04,677 !! 2023-09-24T09:58:04,678 check.warn(importable) 2023-09-24T09:58:04,678 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.scripts' is absent from the `packages` configuration. 2023-09-24T09:58:04,679 !! 2023-09-24T09:58:04,680 ******************************************************************************** 2023-09-24T09:58:04,681 ############################ 2023-09-24T09:58:04,682 # Package would be ignored # 2023-09-24T09:58:04,683 ############################ 2023-09-24T09:58:04,683 Python recognizes 'pmx.scripts' as an importable package[^1], 2023-09-24T09:58:04,684 but it is absent from setuptools' `packages` configuration. 2023-09-24T09:58:04,685 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-24T09:58:04,686 package, please make sure that 'pmx.scripts' is explicitly added 2023-09-24T09:58:04,686 to the `packages` configuration field. 2023-09-24T09:58:04,687 Alternatively, you can also rely on setuptools' discovery methods 2023-09-24T09:58:04,688 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-24T09:58:04,689 instead of `find_packages(...)`/`find:`). 2023-09-24T09:58:04,690 You can read more about "package discovery" on setuptools documentation page: 2023-09-24T09:58:04,691 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-24T09:58:04,693 If you don't want 'pmx.scripts' to be distributed and are 2023-09-24T09:58:04,693 already explicitly excluding 'pmx.scripts' via 2023-09-24T09:58:04,694 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-24T09:58:04,695 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-24T09:58:04,696 combination with a more fine grained `package-data` configuration. 2023-09-24T09:58:04,697 You can read more about "package data files" on setuptools documentation page: 2023-09-24T09:58:04,697 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-24T09:58:04,699 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-24T09:58:04,699 even if it does not contain any `.py` files. 2023-09-24T09:58:04,700 On the other hand, currently there is no concept of package data 2023-09-24T09:58:04,700 directory, all directories are treated like packages. 2023-09-24T09:58:04,701 ******************************************************************************** 2023-09-24T09:58:04,701 !! 2023-09-24T09:58:04,702 check.warn(importable) 2023-09-24T09:58:04,702 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.scripts.icolos_entrypoints' is absent from the `packages` configuration. 2023-09-24T09:58:04,703 !! 2023-09-24T09:58:04,704 ******************************************************************************** 2023-09-24T09:58:04,704 ############################ 2023-09-24T09:58:04,720 # Package would be ignored # 2023-09-24T09:58:04,722 ############################ 2023-09-24T09:58:04,735 Python recognizes 'pmx.scripts.icolos_entrypoints' as an importable package[^1], 2023-09-24T09:58:04,742 but it is absent from setuptools' `packages` configuration. 2023-09-24T09:58:04,779 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-24T09:58:04,799 package, please make sure that 'pmx.scripts.icolos_entrypoints' is explicitly added 2023-09-24T09:58:04,829 to the `packages` configuration field. 2023-09-24T09:58:04,866 Alternatively, you can also rely on setuptools' discovery methods 2023-09-24T09:58:04,885 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-24T09:58:04,892 instead of `find_packages(...)`/`find:`). 2023-09-24T09:58:04,897 You can read more about "package discovery" on setuptools documentation page: 2023-09-24T09:58:04,899 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-24T09:58:04,901 If you don't want 'pmx.scripts.icolos_entrypoints' to be distributed and are 2023-09-24T09:58:04,901 already explicitly excluding 'pmx.scripts.icolos_entrypoints' via 2023-09-24T09:58:04,902 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-24T09:58:04,902 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-24T09:58:04,903 combination with a more fine grained `package-data` configuration. 2023-09-24T09:58:04,904 You can read more about "package data files" on setuptools documentation page: 2023-09-24T09:58:04,905 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-24T09:58:04,906 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-24T09:58:04,907 even if it does not contain any `.py` files. 2023-09-24T09:58:04,907 On the other hand, currently there is no concept of package data 2023-09-24T09:58:04,908 directory, all directories are treated like packages. 2023-09-24T09:58:04,908 ******************************************************************************** 2023-09-24T09:58:04,909 !! 2023-09-24T09:58:04,910 check.warn(importable) 2023-09-24T09:58:04,911 creating build/lib.linux-armv7l-cpython-311/pmx/data 2023-09-24T09:58:04,913 copying src/pmx/data/aminoacids.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data 2023-09-24T09:58:04,913 copying src/pmx/data/bbdep.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data 2023-09-24T09:58:04,914 copying src/pmx/data/blosum62_new.mat -> build/lib.linux-armv7l-cpython-311/pmx/data 2023-09-24T09:58:04,914 copying src/pmx/data/bp.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data 2023-09-24T09:58:04,915 copying src/pmx/data/bp_amber.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data 2023-09-24T09:58:04,919 copying src/pmx/data/bp_charmm.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data 2023-09-24T09:58:04,923 copying src/pmx/data/rna.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data 2023-09-24T09:58:04,927 creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff 2023-09-24T09:58:04,928 copying src/pmx/data/mutff/atommass.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff 2023-09-24T09:58:04,930 copying src/pmx/data/mutff/elements.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff 2023-09-24T09:58:04,932 copying src/pmx/data/mutff/residuetypes.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff 2023-09-24T09:58:04,934 copying src/pmx/data/mutff/spc216.gro -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff 2023-09-24T09:58:04,937 copying src/pmx/data/mutff/specbond.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff 2023-09-24T09:58:04,939 copying src/pmx/data/mutff/vdwradii.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff 2023-09-24T09:58:04,940 copying src/pmx/data/mutff/xlateat.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff 2023-09-24T09:58:04,942 creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,943 copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.am -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,945 copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.in -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,948 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,950 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,952 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,954 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,956 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,958 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,962 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,964 copying src/pmx/data/mutff/amber14sbmut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,966 copying src/pmx/data/mutff/amber14sbmut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,968 copying src/pmx/data/mutff/amber14sbmut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,970 copying src/pmx/data/mutff/amber14sbmut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,972 copying src/pmx/data/mutff/amber14sbmut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,975 copying src/pmx/data/mutff/amber14sbmut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,979 copying src/pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,981 copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,983 copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,985 copying src/pmx/data/mutff/amber14sbmut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,987 copying src/pmx/data/mutff/amber14sbmut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:04,989 copying src/pmx/data/mutff/amber14sbmut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:05,035 copying src/pmx/data/mutff/amber14sbmut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:05,059 copying src/pmx/data/mutff/amber14sbmut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:05,061 copying src/pmx/data/mutff/amber14sbmut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:05,063 copying src/pmx/data/mutff/amber14sbmut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:05,065 copying src/pmx/data/mutff/amber14sbmut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:05,068 copying src/pmx/data/mutff/amber14sbmut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:05,070 copying src/pmx/data/mutff/amber14sbmut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:05,072 copying src/pmx/data/mutff/amber14sbmut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:05,074 copying src/pmx/data/mutff/amber14sbmut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:05,076 copying src/pmx/data/mutff/amber14sbmut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:05,078 copying src/pmx/data/mutff/amber14sbmut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:05,080 copying src/pmx/data/mutff/amber14sbmut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:05,081 copying src/pmx/data/mutff/amber14sbmut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:05,084 creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,084 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,087 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,089 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,091 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,094 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,096 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,098 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,102 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,105 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,107 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,110 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,130 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,134 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,135 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,137 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,140 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,142 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,145 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,149 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,152 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,154 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,156 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,158 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,160 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,206 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,225 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,232 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,236 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,238 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,241 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,243 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,245 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,247 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,250 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,252 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,254 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,255 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,257 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,259 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,261 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,263 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:05,265 creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,266 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,268 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,270 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,273 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,275 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,277 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,280 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,283 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,285 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,288 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,316 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,319 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,321 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,323 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,325 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,328 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,330 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,334 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,337 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,339 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,341 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,343 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,346 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,401 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,419 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,426 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,430 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,433 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,436 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,438 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,440 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,442 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,445 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,447 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,449 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,451 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,453 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,455 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,457 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,459 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:05,460 creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,461 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,464 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,466 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,469 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,471 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,472 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,477 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,480 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,482 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,484 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,486 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,488 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,491 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,495 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,497 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,499 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,501 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,503 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,505 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,555 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,583 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,585 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,588 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,589 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,593 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,595 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,597 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,599 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,601 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,603 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,606 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,608 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:05,610 creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,611 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,614 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,616 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,619 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,621 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,623 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,626 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,629 copying src/pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,631 copying src/pmx/data/mutff/charmm22star-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,634 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,636 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,638 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,640 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,642 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,645 copying src/pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,649 copying src/pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,653 copying src/pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,657 copying src/pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,663 copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,666 copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,668 copying src/pmx/data/mutff/charmm22star-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,670 copying src/pmx/data/mutff/charmm22star-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,673 copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,675 copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,678 copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,680 copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,733 copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,753 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,755 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,757 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,759 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,761 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,763 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,766 copying src/pmx/data/mutff/charmm22star-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,768 copying src/pmx/data/mutff/charmm22star-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,770 copying src/pmx/data/mutff/charmm22star-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,772 copying src/pmx/data/mutff/charmm22star-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,773 copying src/pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,775 copying src/pmx/data/mutff/charmm22star-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,777 copying src/pmx/data/mutff/charmm22star-mut.ff/tips3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,779 copying src/pmx/data/mutff/charmm22star-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:05,781 creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,782 copying src/pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,785 copying src/pmx/data/mutff/charmm36m-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,789 copying src/pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,810 copying src/pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,835 copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,838 copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,840 copying src/pmx/data/mutff/charmm36m-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,842 copying src/pmx/data/mutff/charmm36m-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,844 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,846 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,848 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,850 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,852 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,854 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,872 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,874 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,876 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,921 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,944 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,952 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,956 copying src/pmx/data/mutff/charmm36m-mut.ff/nbfix.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,958 copying src/pmx/data/mutff/charmm36m-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,959 copying src/pmx/data/mutff/charmm36m-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,961 copying src/pmx/data/mutff/charmm36m-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,963 copying src/pmx/data/mutff/charmm36m-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,965 copying src/pmx/data/mutff/charmm36m-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:05,967 creating build/lib.linux-armv7l-cpython-311/pmx/extensions 2023-09-24T09:58:05,968 creating build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx 2023-09-24T09:58:05,969 copying src/pmx/extensions/pmx/Energy.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx 2023-09-24T09:58:05,971 copying src/pmx/extensions/pmx/Geometry.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx 2023-09-24T09:58:05,974 copying src/pmx/extensions/pmx/Geometry.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx 2023-09-24T09:58:05,977 copying src/pmx/extensions/pmx/cpp_test.cpp -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx 2023-09-24T09:58:05,979 copying src/pmx/extensions/pmx/init.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx 2023-09-24T09:58:05,981 copying src/pmx/extensions/pmx/pmx.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx 2023-09-24T09:58:05,983 copying src/pmx/extensions/pmx/wrap_Geometry.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx 2023-09-24T09:58:05,985 creating build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr 2023-09-24T09:58:05,986 copying src/pmx/extensions/xdr/trr2xtc.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr 2023-09-24T09:58:05,989 copying src/pmx/extensions/xdr/xdrfile.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr 2023-09-24T09:58:05,992 copying src/pmx/extensions/xdr/xdrfile.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr 2023-09-24T09:58:05,995 copying src/pmx/extensions/xdr/xdrfile_c_test.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr 2023-09-24T09:58:05,997 copying src/pmx/extensions/xdr/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr 2023-09-24T09:58:06,000 copying src/pmx/extensions/xdr/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr 2023-09-24T09:58:06,002 copying src/pmx/extensions/xdr/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr 2023-09-24T09:58:06,004 copying src/pmx/extensions/xdr/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr 2023-09-24T09:58:06,006 creating build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:58:06,007 copying src/pmx/scripts/__init__.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:58:06,009 copying src/pmx/scripts/analyze_dhdl.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:58:06,012 copying src/pmx/scripts/atomMapping.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:58:06,015 copying src/pmx/scripts/build_cyclic_top.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:58:06,017 copying src/pmx/scripts/cli.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:58:06,019 copying src/pmx/scripts/generate_hybrid_residue.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:58:06,023 copying src/pmx/scripts/generate_hybrid_topology.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:58:06,025 copying src/pmx/scripts/ligandHybrid.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:58:06,028 copying src/pmx/scripts/make_double_box.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:58:06,030 copying src/pmx/scripts/md_setup.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:58:06,032 copying src/pmx/scripts/mutate.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:58:06,035 copying src/pmx/scripts/prepare_crooks_runs.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:58:06,037 copying src/pmx/scripts/set_gmxlib.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:58:06,039 copying src/pmx/scripts/setup_abfe.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:58:06,042 creating build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints 2023-09-24T09:58:06,042 copying src/pmx/scripts/icolos_entrypoints/__init__.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints 2023-09-24T09:58:06,044 copying src/pmx/scripts/icolos_entrypoints/assemble_systems.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints 2023-09-24T09:58:06,048 UPDATING build/lib.linux-armv7l-cpython-311/pmx/_version.py 2023-09-24T09:58:06,049 set build/lib.linux-armv7l-cpython-311/pmx/_version.py to '3.0.1' 2023-09-24T09:58:06,050 running build_ext 2023-09-24T09:58:06,552 building 'pmx._pmx' extension 2023-09-24T09:58:06,553 creating build/temp.linux-armv7l-cpython-311 2023-09-24T09:58:06,553 creating build/temp.linux-armv7l-cpython-311/src 2023-09-24T09:58:06,554 creating build/temp.linux-armv7l-cpython-311/src/pmx 2023-09-24T09:58:06,555 creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions 2023-09-24T09:58:06,555 creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx 2023-09-24T09:58:06,556 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/Energy.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Energy.o 2023-09-24T09:58:07,654 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/Geometry.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Geometry.o 2023-09-24T09:58:08,059 src/pmx/extensions/pmx/Geometry.c: In function ‘spread_atoms_on_grid’: 2023-09-24T09:58:08,060 src/pmx/extensions/pmx/Geometry.c:527:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable] 2023-09-24T09:58:08,061 527 | int nx, ny, nz; 2023-09-24T09:58:08,062 | ^~ 2023-09-24T09:58:08,063 src/pmx/extensions/pmx/Geometry.c: In function ‘search_neighbors’: 2023-09-24T09:58:08,064 src/pmx/extensions/pmx/Geometry.c:586:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable] 2023-09-24T09:58:08,064 586 | int nx, ny, nz; 2023-09-24T09:58:08,065 | ^~ 2023-09-24T09:58:09,940 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/init.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/init.o 2023-09-24T09:58:10,335 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/wrap_Geometry.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/wrap_Geometry.o 2023-09-24T09:58:11,889 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Energy.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Geometry.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/init.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/wrap_Geometry.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/pmx/_pmx.cpython-311-arm-linux-gnueabihf.so 2023-09-24T09:58:12,016 building 'pmx._xdrio' extension 2023-09-24T09:58:12,018 creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr 2023-09-24T09:58:12,018 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.11 -c src/pmx/extensions/xdr/xdrfile.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile.o 2023-09-24T09:58:12,060 src/pmx/extensions/xdr/xdrfile.c:5:2: warning: "/*" within comment [-Wcomment] 2023-09-24T09:58:12,060 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-09-24T09:58:12,061 | 2023-09-24T09:58:12,149 In file included from src/pmx/extensions/xdr/xdrfile.c:60: 2023-09-24T09:58:12,150 src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-09-24T09:58:12,150 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-09-24T09:58:12,151 | 2023-09-24T09:58:12,158 src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofint’: 2023-09-24T09:58:12,159 src/pmx/extensions/xdr/xdrfile.c:499:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-24T09:58:12,159 499 | while (size >= num && num_of_bits < 32) 2023-09-24T09:58:12,160 | ^~ 2023-09-24T09:58:12,161 src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofints’: 2023-09-24T09:58:12,161 src/pmx/extensions/xdr/xdrfile.c:545:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-24T09:58:12,162 545 | while (bytes[num_of_bytes] >= num) 2023-09-24T09:58:12,163 | ^~ 2023-09-24T09:58:12,163 src/pmx/extensions/xdr/xdrfile.c: In function ‘encodeints’: 2023-09-24T09:58:12,164 src/pmx/extensions/xdr/xdrfile.c:654:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-24T09:58:12,165 654 | if (num_of_bits >= num_of_bytes * 8) 2023-09-24T09:58:12,165 | ^~ 2023-09-24T09:58:12,166 src/pmx/extensions/xdr/xdrfile.c:656:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-24T09:58:12,167 656 | for (i = 0; i < num_of_bytes; i++) 2023-09-24T09:58:12,168 | ^ 2023-09-24T09:58:12,168 src/pmx/extensions/xdr/xdrfile.c:664:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-24T09:58:12,169 664 | for (i = 0; i < num_of_bytes-1; i++) 2023-09-24T09:58:12,169 | ^ 2023-09-24T09:58:12,170 src/pmx/extensions/xdr/xdrfile.c: In function ‘decodebits’: 2023-09-24T09:58:12,171 src/pmx/extensions/xdr/xdrfile.c:704:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-24T09:58:12,171 704 | if (lastbits < num_of_bits) 2023-09-24T09:58:12,172 | ^ 2023-09-24T09:58:12,173 src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_float’: 2023-09-24T09:58:12,173 src/pmx/extensions/xdr/xdrfile.c:814:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-24T09:58:12,174 814 | if(size3>xfp->buf1size) 2023-09-24T09:58:12,175 | ^ 2023-09-24T09:58:12,177 src/pmx/extensions/xdr/xdrfile.c:866:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-24T09:58:12,177 866 | maxidx = (LASTIDXxfp->buf1size) 2023-09-24T09:58:12,187 | ^ 2023-09-24T09:58:12,192 src/pmx/extensions/xdr/xdrfile.c:1133:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-24T09:58:12,193 1133 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) 2023-09-24T09:58:12,193 | ^ 2023-09-24T09:58:12,194 src/pmx/extensions/xdr/xdrfile.c:1139:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-24T09:58:12,195 1139 | maxidx = (LASTIDXxfp->buf1size) 2023-09-24T09:58:12,207 | ^ 2023-09-24T09:58:12,209 src/pmx/extensions/xdr/xdrfile.c:1366:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-24T09:58:12,210 1366 | maxidx = (LASTIDXxfp->buf1size) { 2023-09-24T09:58:12,222 | ^ 2023-09-24T09:58:12,229 src/pmx/extensions/xdr/xdrfile.c:1617:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-24T09:58:12,230 1617 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { 2023-09-24T09:58:12,230 | ^ 2023-09-24T09:58:12,231 src/pmx/extensions/xdr/xdrfile.c:1622:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-24T09:58:12,232 1622 | maxidx = (LASTIDX build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:15,955 copying build/lib.linux-armv7l-cpython-311/pmx/options.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:15,957 copying build/lib.linux-armv7l-cpython-311/pmx/xdrfile.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:15,959 copying build/lib.linux-armv7l-cpython-311/pmx/gmx.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:15,961 copying build/lib.linux-armv7l-cpython-311/pmx/mutdb.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:15,964 creating build/bdist.linux-armv7l/wheel/pmx/extensions 2023-09-24T09:58:15,965 creating build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-09-24T09:58:15,966 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-09-24T09:58:15,968 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_c_test.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-09-24T09:58:15,970 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-09-24T09:58:15,973 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-09-24T09:58:15,974 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-09-24T09:58:15,976 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/trr2xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-09-24T09:58:15,978 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-09-24T09:58:15,982 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-09-24T09:58:15,984 creating build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-09-24T09:58:15,985 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/cpp_test.cpp -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-09-24T09:58:15,987 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/init.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-09-24T09:58:15,989 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Energy.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-09-24T09:58:15,992 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/pmx.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-09-24T09:58:15,994 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/wrap_Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-09-24T09:58:15,996 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-09-24T09:58:15,999 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Geometry.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-09-24T09:58:16,001 copying build/lib.linux-armv7l-cpython-311/pmx/forcefield.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:16,005 copying build/lib.linux-armv7l-cpython-311/pmx/xtc.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:16,007 copying build/lib.linux-armv7l-cpython-311/pmx/library.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:16,011 copying build/lib.linux-armv7l-cpython-311/pmx/geometry.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:16,014 copying build/lib.linux-armv7l-cpython-311/pmx/alchemy.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:16,017 copying build/lib.linux-armv7l-cpython-311/pmx/ligand_alchemy.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:16,021 copying build/lib.linux-armv7l-cpython-311/pmx/jobscript.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:16,023 copying build/lib.linux-armv7l-cpython-311/pmx/rotamer.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:16,025 copying build/lib.linux-armv7l-cpython-311/pmx/rosetta.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:16,027 copying build/lib.linux-armv7l-cpython-311/pmx/chain.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:16,030 copying build/lib.linux-armv7l-cpython-311/pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:16,035 creating build/bdist.linux-armv7l/wheel/pmx/data 2023-09-24T09:58:16,036 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-09-24T09:58:16,037 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/specbond.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-09-24T09:58:16,038 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/vdwradii.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-09-24T09:58:16,040 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/spc216.gro -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-09-24T09:58:16,043 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,044 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,046 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,048 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,049 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,051 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tips3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,053 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,055 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,057 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,059 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,061 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,063 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,105 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,109 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,111 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,113 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,114 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,116 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,118 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,120 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,123 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,126 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,128 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,147 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,149 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,153 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,155 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,157 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,159 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,161 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,165 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,167 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/lipids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,170 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,172 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/lipids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,174 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,176 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,179 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,184 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,186 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,189 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,191 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,193 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:58:16,196 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/xlateat.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-09-24T09:58:16,198 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/elements.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-09-24T09:58:16,201 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,202 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,204 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,206 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,208 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,210 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,213 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,215 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,217 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,220 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,223 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,225 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,227 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,299 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,303 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,306 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,308 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,310 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,342 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,344 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,346 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,348 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,350 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,353 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,356 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,358 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,360 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,362 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,364 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,367 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,368 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,370 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,372 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:58:16,374 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/atommass.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-09-24T09:58:16,377 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,378 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,380 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,382 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,383 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,385 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,387 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,389 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,391 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/Makefile.am -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,392 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,394 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/Makefile.in -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,397 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,399 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,401 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,403 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,470 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,474 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,477 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,479 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,481 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,503 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,505 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,507 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,508 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,510 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,514 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,516 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,518 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,520 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,522 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,525 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,527 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,529 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,531 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,532 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:58:16,534 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/residuetypes.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-09-24T09:58:16,537 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,538 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,540 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,542 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,543 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,545 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,564 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,566 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,569 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,571 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,572 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,574 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,577 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,579 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,581 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,630 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,633 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,635 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,637 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,639 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,641 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,669 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,671 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,676 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,679 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,681 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,683 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,686 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,692 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,704 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,706 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,709 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,711 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,714 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,717 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,720 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,723 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,725 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,728 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,731 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,733 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:58:16,736 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,737 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,739 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,741 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,744 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,746 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,779 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,781 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,784 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,786 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,788 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,790 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,793 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,795 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,797 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,841 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,844 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,846 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,848 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,850 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,852 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,872 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,874 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,879 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,881 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,883 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,885 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,888 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,892 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,899 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,902 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,904 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,906 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,909 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,911 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,913 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,916 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,919 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,921 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,924 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,926 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,928 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:58:16,931 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:16,932 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:16,934 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:16,936 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:16,939 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:16,941 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:16,943 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:16,946 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:16,991 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:17,009 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:17,011 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:17,015 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/nbfix.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:17,017 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:17,019 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:17,023 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:17,051 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:17,057 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:17,060 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:17,063 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:17,067 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:17,094 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:17,103 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:17,105 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:17,108 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:17,111 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:17,114 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:17,149 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:58:17,151 copying build/lib.linux-armv7l-cpython-311/pmx/data/bp_amber.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-09-24T09:58:17,155 copying build/lib.linux-armv7l-cpython-311/pmx/data/bp.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-09-24T09:58:17,159 copying build/lib.linux-armv7l-cpython-311/pmx/data/bp_charmm.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-09-24T09:58:17,164 copying build/lib.linux-armv7l-cpython-311/pmx/data/bbdep.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-09-24T09:58:17,408 copying build/lib.linux-armv7l-cpython-311/pmx/data/aminoacids.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-09-24T09:58:17,414 copying build/lib.linux-armv7l-cpython-311/pmx/data/rna.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-09-24T09:58:17,417 copying build/lib.linux-armv7l-cpython-311/pmx/data/blosum62_new.mat -> build/bdist.linux-armv7l/wheel/pmx/data 2023-09-24T09:58:17,419 copying build/lib.linux-armv7l-cpython-311/pmx/_pmx.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:17,425 copying build/lib.linux-armv7l-cpython-311/pmx/molecule.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:17,427 copying build/lib.linux-armv7l-cpython-311/pmx/utils.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:17,430 copying build/lib.linux-armv7l-cpython-311/pmx/estimators.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:17,432 copying build/lib.linux-armv7l-cpython-311/pmx/model.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:17,435 copying build/lib.linux-armv7l-cpython-311/pmx/analysis.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:17,437 copying build/lib.linux-armv7l-cpython-311/pmx/ffparser.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:17,440 creating build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:58:17,441 creating build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints 2023-09-24T09:58:17,442 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints 2023-09-24T09:58:17,444 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints/assemble_systems.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints 2023-09-24T09:58:17,446 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/analyze_dhdl.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:58:17,448 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/setup_abfe.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:58:17,451 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/set_gmxlib.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:58:17,453 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligandHybrid.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:58:17,455 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/md_setup.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:58:17,458 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/make_double_box.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:58:17,459 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/cli.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:58:17,461 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/generate_hybrid_residue.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:58:17,465 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/build_cyclic_top.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:58:17,468 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/mutate.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:58:17,471 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/atomMapping.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:58:17,473 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/generate_hybrid_topology.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:58:17,476 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:58:17,477 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/prepare_crooks_runs.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:58:17,480 copying build/lib.linux-armv7l-cpython-311/pmx/builder.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:17,483 copying build/lib.linux-armv7l-cpython-311/pmx/parser.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:17,486 copying build/lib.linux-armv7l-cpython-311/pmx/_version.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:17,488 copying build/lib.linux-armv7l-cpython-311/pmx/ndx.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:17,491 copying build/lib.linux-armv7l-cpython-311/pmx/__init__.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:17,494 copying build/lib.linux-armv7l-cpython-311/pmx/rosetta_analyze.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:17,496 copying build/lib.linux-armv7l-cpython-311/pmx/atomselection.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:58:17,499 running install_egg_info 2023-09-24T09:58:17,531 Copying src/pmx_biobb.egg-info to build/bdist.linux-armv7l/wheel/pmx_biobb-3.0.1-py3.11.egg-info 2023-09-24T09:58:17,545 running install_scripts 2023-09-24T09:58:17,596 creating build/bdist.linux-armv7l/wheel/pmx_biobb-3.0.1.dist-info/WHEEL 2023-09-24T09:58:17,599 creating '/tmp/pip-wheel-cbw1w_ls/pmx_biobb-3.0.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-24T09:58:17,602 adding 'pmx/__init__.py' 2023-09-24T09:58:17,638 adding 'pmx/_pmx.cpython-311-arm-linux-gnueabihf.so' 2023-09-24T09:58:17,641 adding 'pmx/_version.py' 2023-09-24T09:58:17,664 adding 'pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so' 2023-09-24T09:58:17,672 adding 'pmx/alchemy.py' 2023-09-24T09:58:17,676 adding 'pmx/analysis.py' 2023-09-24T09:58:17,679 adding 'pmx/atom.py' 2023-09-24T09:58:17,682 adding 'pmx/atomselection.py' 2023-09-24T09:58:17,685 adding 'pmx/builder.py' 2023-09-24T09:58:17,689 adding 'pmx/chain.py' 2023-09-24T09:58:17,693 adding 'pmx/estimators.py' 2023-09-24T09:58:17,696 adding 'pmx/ffparser.py' 2023-09-24T09:58:17,706 adding 'pmx/forcefield.py' 2023-09-24T09:58:17,709 adding 'pmx/geometry.py' 2023-09-24T09:58:17,711 adding 'pmx/gmx.py' 2023-09-24T09:58:17,713 adding 'pmx/jobscript.py' 2023-09-24T09:58:17,722 adding 'pmx/library.py' 2023-09-24T09:58:17,736 adding 'pmx/ligand_alchemy.py' 2023-09-24T09:58:17,743 adding 'pmx/model.py' 2023-09-24T09:58:17,747 adding 'pmx/molecule.py' 2023-09-24T09:58:17,749 adding 'pmx/mutdb.py' 2023-09-24T09:58:17,752 adding 'pmx/ndx.py' 2023-09-24T09:58:17,754 adding 'pmx/options.py' 2023-09-24T09:58:17,756 adding 'pmx/parser.py' 2023-09-24T09:58:17,760 adding 'pmx/rosetta.py' 2023-09-24T09:58:17,763 adding 'pmx/rosetta_analyze.py' 2023-09-24T09:58:17,765 adding 'pmx/rotamer.py' 2023-09-24T09:58:17,768 adding 'pmx/utils.py' 2023-09-24T09:58:17,770 adding 'pmx/xdrfile.py' 2023-09-24T09:58:17,771 adding 'pmx/xtc.py' 2023-09-24T09:58:17,798 adding 'pmx/data/aminoacids.pkl' 2023-09-24T09:58:19,617 adding 'pmx/data/bbdep.pkl' 2023-09-24T09:58:19,757 adding 'pmx/data/blosum62_new.mat' 2023-09-24T09:58:19,773 adding 'pmx/data/bp.pkl' 2023-09-24T09:58:19,793 adding 'pmx/data/bp_amber.pkl' 2023-09-24T09:58:19,813 adding 'pmx/data/bp_charmm.pkl' 2023-09-24T09:58:19,823 adding 'pmx/data/rna.pkl' 2023-09-24T09:58:19,825 adding 'pmx/data/mutff/atommass.dat' 2023-09-24T09:58:19,827 adding 'pmx/data/mutff/elements.dat' 2023-09-24T09:58:19,829 adding 'pmx/data/mutff/residuetypes.dat' 2023-09-24T09:58:19,835 adding 'pmx/data/mutff/spc216.gro' 2023-09-24T09:58:19,837 adding 'pmx/data/mutff/specbond.dat' 2023-09-24T09:58:19,838 adding 'pmx/data/mutff/vdwradii.dat' 2023-09-24T09:58:19,839 adding 'pmx/data/mutff/xlateat.dat' 2023-09-24T09:58:19,841 adding 'pmx/data/mutff/amber14sbmut.ff/Makefile.am' 2023-09-24T09:58:19,844 adding 'pmx/data/mutff/amber14sbmut.ff/Makefile.in' 2023-09-24T09:58:19,846 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.arn' 2023-09-24T09:58:19,847 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb' 2023-09-24T09:58:19,848 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb' 2023-09-24T09:58:19,849 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb' 2023-09-24T09:58:19,851 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b' 2023-09-24T09:58:19,857 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp' 2023-09-24T09:58:19,859 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd' 2023-09-24T09:58:19,861 adding 'pmx/data/mutff/amber14sbmut.ff/atomtypes.atp' 2023-09-24T09:58:19,862 adding 'pmx/data/mutff/amber14sbmut.ff/dna.arn' 2023-09-24T09:58:19,863 adding 'pmx/data/mutff/amber14sbmut.ff/dna.hdb' 2023-09-24T09:58:19,864 adding 'pmx/data/mutff/amber14sbmut.ff/dna.r2b' 2023-09-24T09:58:19,867 adding 'pmx/data/mutff/amber14sbmut.ff/dna.rtp' 2023-09-24T09:58:19,874 adding 'pmx/data/mutff/amber14sbmut.ff/ffbonded.itp' 2023-09-24T09:58:19,876 adding 'pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp' 2023-09-24T09:58:19,877 adding 'pmx/data/mutff/amber14sbmut.ff/forcefield.doc' 2023-09-24T09:58:19,878 adding 'pmx/data/mutff/amber14sbmut.ff/forcefield.itp' 2023-09-24T09:58:19,880 adding 'pmx/data/mutff/amber14sbmut.ff/gbsa.itp' 2023-09-24T09:58:19,881 adding 'pmx/data/mutff/amber14sbmut.ff/ions.itp' 2023-09-24T09:58:20,060 adding 'pmx/data/mutff/amber14sbmut.ff/mutres.mtp' 2023-09-24T09:58:20,150 adding 'pmx/data/mutff/amber14sbmut.ff/mutres.rtp' 2023-09-24T09:58:20,161 adding 'pmx/data/mutff/amber14sbmut.ff/rna.arn' 2023-09-24T09:58:20,162 adding 'pmx/data/mutff/amber14sbmut.ff/rna.hdb' 2023-09-24T09:58:20,163 adding 'pmx/data/mutff/amber14sbmut.ff/rna.r2b' 2023-09-24T09:58:20,166 adding 'pmx/data/mutff/amber14sbmut.ff/rna.rtp' 2023-09-24T09:58:20,167 adding 'pmx/data/mutff/amber14sbmut.ff/spc.itp' 2023-09-24T09:58:20,168 adding 'pmx/data/mutff/amber14sbmut.ff/spce.itp' 2023-09-24T09:58:20,170 adding 'pmx/data/mutff/amber14sbmut.ff/tip3p.itp' 2023-09-24T09:58:20,171 adding 'pmx/data/mutff/amber14sbmut.ff/tip4p.itp' 2023-09-24T09:58:20,172 adding 'pmx/data/mutff/amber14sbmut.ff/tip4pew.itp' 2023-09-24T09:58:20,173 adding 'pmx/data/mutff/amber14sbmut.ff/tip5p.itp' 2023-09-24T09:58:20,175 adding 'pmx/data/mutff/amber14sbmut.ff/urea.itp' 2023-09-24T09:58:20,176 adding 'pmx/data/mutff/amber14sbmut.ff/watermodels.dat' 2023-09-24T09:58:20,179 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn' 2023-09-24T09:58:20,181 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup' 2023-09-24T09:58:20,182 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb' 2023-09-24T09:58:20,183 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb' 2023-09-24T09:58:20,184 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb' 2023-09-24T09:58:20,186 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b' 2023-09-24T09:58:20,194 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp' 2023-09-24T09:58:20,196 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd' 2023-09-24T09:58:20,198 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp' 2023-09-24T09:58:20,201 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp' 2023-09-24T09:58:20,263 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres' 2023-09-24T09:58:20,276 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp' 2023-09-24T09:58:20,278 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn' 2023-09-24T09:58:20,279 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb' 2023-09-24T09:58:20,280 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b' 2023-09-24T09:58:20,283 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp' 2023-09-24T09:58:20,285 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp' 2023-09-24T09:58:20,289 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp' 2023-09-24T09:58:20,291 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp' 2023-09-24T09:58:20,293 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc' 2023-09-24T09:58:20,294 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp' 2023-09-24T09:58:20,295 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp' 2023-09-24T09:58:20,297 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp' 2023-09-24T09:58:20,452 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp' 2023-09-24T09:58:20,535 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp' 2023-09-24T09:58:20,562 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp' 2023-09-24T09:58:20,572 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp' 2023-09-24T09:58:20,575 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp' 2023-09-24T09:58:20,578 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp' 2023-09-24T09:58:20,579 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn' 2023-09-24T09:58:20,580 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb' 2023-09-24T09:58:20,581 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b' 2023-09-24T09:58:20,583 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp' 2023-09-24T09:58:20,585 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp' 2023-09-24T09:58:20,586 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp' 2023-09-24T09:58:20,587 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp' 2023-09-24T09:58:20,588 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp' 2023-09-24T09:58:20,590 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp' 2023-09-24T09:58:20,591 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp' 2023-09-24T09:58:20,592 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp' 2023-09-24T09:58:20,593 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat' 2023-09-24T09:58:20,596 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn' 2023-09-24T09:58:20,597 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb' 2023-09-24T09:58:20,598 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb' 2023-09-24T09:58:20,599 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb' 2023-09-24T09:58:20,601 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b' 2023-09-24T09:58:20,609 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp' 2023-09-24T09:58:20,612 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd' 2023-09-24T09:58:20,613 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp' 2023-09-24T09:58:20,617 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp' 2023-09-24T09:58:20,679 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres' 2023-09-24T09:58:20,692 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp' 2023-09-24T09:58:20,694 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn' 2023-09-24T09:58:20,695 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb' 2023-09-24T09:58:20,696 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b' 2023-09-24T09:58:20,699 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp' 2023-09-24T09:58:20,701 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp' 2023-09-24T09:58:20,705 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp' 2023-09-24T09:58:20,707 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp' 2023-09-24T09:58:20,708 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc' 2023-09-24T09:58:20,710 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp' 2023-09-24T09:58:20,711 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp' 2023-09-24T09:58:20,712 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp' 2023-09-24T09:58:20,868 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp' 2023-09-24T09:58:20,950 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp' 2023-09-24T09:58:20,977 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp' 2023-09-24T09:58:20,987 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp' 2023-09-24T09:58:20,990 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp' 2023-09-24T09:58:20,993 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp' 2023-09-24T09:58:20,994 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn' 2023-09-24T09:58:20,996 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb' 2023-09-24T09:58:20,997 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b' 2023-09-24T09:58:21,000 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp' 2023-09-24T09:58:21,001 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp' 2023-09-24T09:58:21,002 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp' 2023-09-24T09:58:21,003 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp' 2023-09-24T09:58:21,004 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp' 2023-09-24T09:58:21,006 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp' 2023-09-24T09:58:21,007 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp' 2023-09-24T09:58:21,008 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp' 2023-09-24T09:58:21,009 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat' 2023-09-24T09:58:21,012 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn' 2023-09-24T09:58:21,013 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb' 2023-09-24T09:58:21,015 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb' 2023-09-24T09:58:21,016 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb' 2023-09-24T09:58:21,017 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b' 2023-09-24T09:58:21,026 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp' 2023-09-24T09:58:21,028 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd' 2023-09-24T09:58:21,030 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp' 2023-09-24T09:58:21,031 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn' 2023-09-24T09:58:21,032 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb' 2023-09-24T09:58:21,033 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b' 2023-09-24T09:58:21,036 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp' 2023-09-24T09:58:21,040 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp' 2023-09-24T09:58:21,042 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp' 2023-09-24T09:58:21,043 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc' 2023-09-24T09:58:21,044 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp' 2023-09-24T09:58:21,046 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp' 2023-09-24T09:58:21,047 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp' 2023-09-24T09:58:21,234 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp' 2023-09-24T09:58:21,332 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp' 2023-09-24T09:58:21,344 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn' 2023-09-24T09:58:21,345 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb' 2023-09-24T09:58:21,346 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b' 2023-09-24T09:58:21,349 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp' 2023-09-24T09:58:21,350 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp' 2023-09-24T09:58:21,352 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp' 2023-09-24T09:58:21,353 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp' 2023-09-24T09:58:21,354 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp' 2023-09-24T09:58:21,356 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp' 2023-09-24T09:58:21,357 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp' 2023-09-24T09:58:21,358 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp' 2023-09-24T09:58:21,359 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat' 2023-09-24T09:58:21,362 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn' 2023-09-24T09:58:21,363 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb' 2023-09-24T09:58:21,365 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb' 2023-09-24T09:58:21,366 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb' 2023-09-24T09:58:21,367 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b' 2023-09-24T09:58:21,371 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp' 2023-09-24T09:58:21,373 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd' 2023-09-24T09:58:21,375 adding 'pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp' 2023-09-24T09:58:21,380 adding 'pmx/data/mutff/charmm22star-mut.ff/cmap.itp' 2023-09-24T09:58:21,382 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.arn' 2023-09-24T09:58:21,383 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb' 2023-09-24T09:58:21,384 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.hdb' 2023-09-24T09:58:21,385 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb' 2023-09-24T09:58:21,387 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.rtp' 2023-09-24T09:58:21,394 adding 'pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp' 2023-09-24T09:58:21,401 adding 'pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp' 2023-09-24T09:58:21,406 adding 'pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp' 2023-09-24T09:58:21,418 adding 'pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp' 2023-09-24T09:58:21,420 adding 'pmx/data/mutff/charmm22star-mut.ff/forcefield.doc' 2023-09-24T09:58:21,422 adding 'pmx/data/mutff/charmm22star-mut.ff/forcefield.itp' 2023-09-24T09:58:21,423 adding 'pmx/data/mutff/charmm22star-mut.ff/gb.itp' 2023-09-24T09:58:21,424 adding 'pmx/data/mutff/charmm22star-mut.ff/ions.itp' 2023-09-24T09:58:21,425 adding 'pmx/data/mutff/charmm22star-mut.ff/lipids.hdb' 2023-09-24T09:58:21,429 adding 'pmx/data/mutff/charmm22star-mut.ff/lipids.rtp' 2023-09-24T09:58:21,431 adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.arn' 2023-09-24T09:58:21,582 adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.mtp' 2023-09-24T09:58:21,663 adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.rtp' 2023-09-24T09:58:21,674 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.arn' 2023-09-24T09:58:21,675 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb' 2023-09-24T09:58:21,676 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.hdb' 2023-09-24T09:58:21,677 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb' 2023-09-24T09:58:21,679 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.r2b' 2023-09-24T09:58:21,680 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.rtp' 2023-09-24T09:58:21,682 adding 'pmx/data/mutff/charmm22star-mut.ff/spc.itp' 2023-09-24T09:58:21,683 adding 'pmx/data/mutff/charmm22star-mut.ff/spce.itp' 2023-09-24T09:58:21,684 adding 'pmx/data/mutff/charmm22star-mut.ff/tip3p.itp' 2023-09-24T09:58:21,685 adding 'pmx/data/mutff/charmm22star-mut.ff/tip4p.itp' 2023-09-24T09:58:21,687 adding 'pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp' 2023-09-24T09:58:21,688 adding 'pmx/data/mutff/charmm22star-mut.ff/tip5p.itp' 2023-09-24T09:58:21,690 adding 'pmx/data/mutff/charmm22star-mut.ff/tips3p.itp' 2023-09-24T09:58:21,691 adding 'pmx/data/mutff/charmm22star-mut.ff/watermodels.dat' 2023-09-24T09:58:21,695 adding 'pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp' 2023-09-24T09:58:21,708 adding 'pmx/data/mutff/charmm36m-mut.ff/cmap.itp' 2023-09-24T09:58:21,791 adding 'pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp' 2023-09-24T09:58:21,922 adding 'pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp' 2023-09-24T09:58:21,937 adding 'pmx/data/mutff/charmm36m-mut.ff/forcefield.doc' 2023-09-24T09:58:21,938 adding 'pmx/data/mutff/charmm36m-mut.ff/forcefield.itp' 2023-09-24T09:58:21,940 adding 'pmx/data/mutff/charmm36m-mut.ff/gb.itp' 2023-09-24T09:58:21,941 adding 'pmx/data/mutff/charmm36m-mut.ff/ions.itp' 2023-09-24T09:58:21,942 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.arn' 2023-09-24T09:58:21,943 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb' 2023-09-24T09:58:21,945 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.hdb' 2023-09-24T09:58:21,947 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb' 2023-09-24T09:58:21,948 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.r2b' 2023-09-24T09:58:22,085 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.rtp' 2023-09-24T09:58:22,096 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.vsd' 2023-09-24T09:58:22,097 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.arn' 2023-09-24T09:58:22,263 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.mtp' 2023-09-24T09:58:22,351 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.rtp' 2023-09-24T09:58:22,379 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp' 2023-09-24T09:58:22,388 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp' 2023-09-24T09:58:22,391 adding 'pmx/data/mutff/charmm36m-mut.ff/nbfix.itp' 2023-09-24T09:58:22,392 adding 'pmx/data/mutff/charmm36m-mut.ff/spc.itp' 2023-09-24T09:58:22,393 adding 'pmx/data/mutff/charmm36m-mut.ff/spce.itp' 2023-09-24T09:58:22,394 adding 'pmx/data/mutff/charmm36m-mut.ff/tip3p.itp' 2023-09-24T09:58:22,395 adding 'pmx/data/mutff/charmm36m-mut.ff/tip4p.itp' 2023-09-24T09:58:22,396 adding 'pmx/data/mutff/charmm36m-mut.ff/watermodels.dat' 2023-09-24T09:58:22,399 adding 'pmx/extensions/pmx/Energy.c' 2023-09-24T09:58:22,401 adding 'pmx/extensions/pmx/Geometry.c' 2023-09-24T09:58:22,404 adding 'pmx/extensions/pmx/Geometry.h' 2023-09-24T09:58:22,406 adding 'pmx/extensions/pmx/cpp_test.cpp' 2023-09-24T09:58:22,407 adding 'pmx/extensions/pmx/init.c' 2023-09-24T09:58:22,409 adding 'pmx/extensions/pmx/pmx.h' 2023-09-24T09:58:22,411 adding 'pmx/extensions/pmx/wrap_Geometry.c' 2023-09-24T09:58:22,413 adding 'pmx/extensions/xdr/trr2xtc.c' 2023-09-24T09:58:22,420 adding 'pmx/extensions/xdr/xdrfile.c' 2023-09-24T09:58:22,423 adding 'pmx/extensions/xdr/xdrfile.h' 2023-09-24T09:58:22,425 adding 'pmx/extensions/xdr/xdrfile_c_test.c' 2023-09-24T09:58:22,427 adding 'pmx/extensions/xdr/xdrfile_trr.c' 2023-09-24T09:58:22,429 adding 'pmx/extensions/xdr/xdrfile_trr.h' 2023-09-24T09:58:22,430 adding 'pmx/extensions/xdr/xdrfile_xtc.c' 2023-09-24T09:58:22,432 adding 'pmx/extensions/xdr/xdrfile_xtc.h' 2023-09-24T09:58:22,434 adding 'pmx/scripts/__init__.py' 2023-09-24T09:58:22,437 adding 'pmx/scripts/analyze_dhdl.py' 2023-09-24T09:58:22,439 adding 'pmx/scripts/atomMapping.py' 2023-09-24T09:58:22,441 adding 'pmx/scripts/build_cyclic_top.py' 2023-09-24T09:58:22,442 adding 'pmx/scripts/cli.py' 2023-09-24T09:58:22,449 adding 'pmx/scripts/generate_hybrid_residue.py' 2023-09-24T09:58:22,452 adding 'pmx/scripts/generate_hybrid_topology.py' 2023-09-24T09:58:22,454 adding 'pmx/scripts/ligandHybrid.py' 2023-09-24T09:58:22,455 adding 'pmx/scripts/make_double_box.py' 2023-09-24T09:58:22,458 adding 'pmx/scripts/md_setup.py' 2023-09-24T09:58:22,461 adding 'pmx/scripts/mutate.py' 2023-09-24T09:58:22,462 adding 'pmx/scripts/prepare_crooks_runs.py' 2023-09-24T09:58:22,464 adding 'pmx/scripts/set_gmxlib.py' 2023-09-24T09:58:22,466 adding 'pmx/scripts/setup_abfe.py' 2023-09-24T09:58:22,468 adding 'pmx/scripts/icolos_entrypoints/__init__.py' 2023-09-24T09:58:22,470 adding 'pmx/scripts/icolos_entrypoints/assemble_systems.py' 2023-09-24T09:58:22,472 adding 'pmx_biobb-3.0.1.dist-info/LICENSE' 2023-09-24T09:58:22,474 adding 'pmx_biobb-3.0.1.dist-info/METADATA' 2023-09-24T09:58:22,475 adding 'pmx_biobb-3.0.1.dist-info/WHEEL' 2023-09-24T09:58:22,476 adding 'pmx_biobb-3.0.1.dist-info/entry_points.txt' 2023-09-24T09:58:22,477 adding 'pmx_biobb-3.0.1.dist-info/top_level.txt' 2023-09-24T09:58:22,481 adding 'pmx_biobb-3.0.1.dist-info/RECORD' 2023-09-24T09:58:22,562 removing build/bdist.linux-armv7l/wheel 2023-09-24T09:58:22,788 Building wheel for pmx-biobb (setup.py): finished with status 'done' 2023-09-24T09:58:22,860 Created wheel for pmx-biobb: filename=pmx_biobb-3.0.1-cp311-cp311-linux_armv7l.whl size=5908831 sha256=c2f9b6cb2cb584c68d74d0ee760d79c627644692dc8371d1189026b09a9dc068 2023-09-24T09:58:22,861 Stored in directory: /tmp/pip-ephem-wheel-cache-e4djhmns/wheels/e9/b0/dc/9e4778d0eb2525902992799ca7feb1bd3999ade1f68826470a 2023-09-24T09:58:22,882 Successfully built pmx-biobb 2023-09-24T09:58:23,024 Removed build tracker: '/tmp/pip-build-tracker-zh0mff49'