2023-09-24T09:59:00,320 Created temporary directory: /tmp/pip-build-tracker-uok59v2r 2023-09-24T09:59:00,321 Initialized build tracking at /tmp/pip-build-tracker-uok59v2r 2023-09-24T09:59:00,321 Created build tracker: /tmp/pip-build-tracker-uok59v2r 2023-09-24T09:59:00,322 Entered build tracker: /tmp/pip-build-tracker-uok59v2r 2023-09-24T09:59:00,322 Created temporary directory: /tmp/pip-wheel-cn6469s7 2023-09-24T09:59:00,325 Created temporary directory: /tmp/pip-ephem-wheel-cache-4l3mwbe1 2023-09-24T09:59:00,347 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-24T09:59:00,351 2 location(s) to search for versions of pmx-biobb: 2023-09-24T09:59:00,351 * https://pypi.org/simple/pmx-biobb/ 2023-09-24T09:59:00,351 * https://www.piwheels.org/simple/pmx-biobb/ 2023-09-24T09:59:00,352 Fetching project page and analyzing links: https://pypi.org/simple/pmx-biobb/ 2023-09-24T09:59:00,353 Getting page https://pypi.org/simple/pmx-biobb/ 2023-09-24T09:59:00,354 Found index url https://pypi.org/simple/ 2023-09-24T09:59:00,493 Fetched page https://pypi.org/simple/pmx-biobb/ as application/vnd.pypi.simple.v1+json 2023-09-24T09:59:00,498 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/ea/0e/652070bd7d0ca56047ee9da48bdce6ad248973b822b5fe7d931c07a93625/pmx_biobb-1.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:59:00,500 Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:59:00,500 Skipping link: 1.0.0 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:59:00,501 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/5b/2f2f6e34ed256b51485f1313f89aeb9647a2df056fad635dc6c69354a142/pmx_biobb-1.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:59:00,502 Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:59:00,502 Skipping link: 1.0.1 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:59:00,503 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/dc/26/88efc470b39ed04650850696ca8d4c1777e1f1788960a41b063c4f9f64cc/pmx_biobb-2.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,504 Found link https://files.pythonhosted.org/packages/32/7c/dd656cd2d785a7b9815e0ca54fb9bec35c258cdc058d9450726e65bc201c/pmx_biobb-2.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 2.0.0 2023-09-24T09:59:00,505 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/73/a2/51564515b8b81b725a8aa81b962e040e66d59ce4637be894cf02315fc403/pmx_biobb-3.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,505 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/e7/93/4fac73a6fe156e0940953662d457f0424e847a9546db1c10a7bbad5d3642/pmx_biobb-3.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,506 Found link https://files.pythonhosted.org/packages/3c/b8/7dcc8b482f02b8ff26aa1a9819fd389f9cc01087954d968e156a073ea4ac/pmx_biobb-3.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.1 2023-09-24T09:59:00,507 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/c4/2a/c00053a2535945c6900b99621be5c40437e939c64f36ea7d14e3bb5febbe/pmx_biobb-3.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,508 Found link https://files.pythonhosted.org/packages/8a/0b/e7b469ecf2b337e713cafe136f826f79709c9940a4d3a1eb00a669657af0/pmx_biobb-3.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.2 2023-09-24T09:59:00,509 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/8a/70/3744fd3fd4d13d0fcd04c50740aa9584ba6c5b7eb43e1a4dd65a7c223cf2/pmx_biobb-3.0.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,510 Found link https://files.pythonhosted.org/packages/6f/b2/61607c93aa5d3c34838e44ed7df748137d3b266a06a32b6d521a19ddedb4/pmx_biobb-3.0.3.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.3 2023-09-24T09:59:00,510 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/34/3e/e0a91c21ec82ca2108ec1f20c6f9fb0feb3e83b1d9277b2b521b43e77067/pmx_biobb-4.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,511 Found link https://files.pythonhosted.org/packages/d3/ee/61a98e8a9a4a1d5ab8ea32a2712cc1dfb3d7326a8404fcbd3347b28fab4d/pmx_biobb-4.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.0 2023-09-24T09:59:00,512 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/cf/d3/2cac189bd5b21c71cb79a57bf2f38121a2ecc930294758e3565302de7d21/pmx_biobb-4.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,512 Found link https://files.pythonhosted.org/packages/b9/64/0a7b31944dfae299db2a1da0949f82c4843cbc8ee4abb2f2b3f716d38640/pmx_biobb-4.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.1 2023-09-24T09:59:00,513 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/6d/c32f57cf60dce3b6835df798488a8e6980ca6e2865723f9e1c9551a8bff3/pmx_biobb-4.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,514 Found link https://files.pythonhosted.org/packages/1e/f1/377ebcaabe3ae496f4e58c434464cc6899d7a1a6287abea0ac19c9a84f38/pmx_biobb-4.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.2 2023-09-24T09:59:00,515 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/21/d8/92f5da41c0ccee7807122989b44711b075159e3129707c40a469a5333825/pmx_biobb-4.1.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,516 Found link https://files.pythonhosted.org/packages/de/e6/7e0419f8305191fb52c09e3f36db33fa8e37e029e6e2d0c361cb384cfefa/pmx_biobb-4.1.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.1.2 2023-09-24T09:59:00,516 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/8f/b7/67894a846ff237417e009dd532d744eff5fd675e98ccb50e27fda4c145e1/pmx_biobb-4.1.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,517 Found link https://files.pythonhosted.org/packages/ff/3a/d6a0cec96cc00189a683995a26e729c9d09e503129b35192923c46bd93ed/pmx_biobb-4.1.3.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.1.3 2023-09-24T09:59:00,518 Fetching project page and analyzing links: https://www.piwheels.org/simple/pmx-biobb/ 2023-09-24T09:59:00,519 Getting page https://www.piwheels.org/simple/pmx-biobb/ 2023-09-24T09:59:00,520 Found index url https://www.piwheels.org/simple/ 2023-09-24T09:59:00,681 Fetched page https://www.piwheels.org/simple/pmx-biobb/ as text/html 2023-09-24T09:59:00,693 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp39-cp39-linux_armv7l.whl#sha256=53bd7ffc22fe4dae9200c2f72b9650e77d4ab7809ecb0219685e7429222e7b43 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,693 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp39-cp39-linux_armv6l.whl#sha256=53bd7ffc22fe4dae9200c2f72b9650e77d4ab7809ecb0219685e7429222e7b43 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,694 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp37-cp37m-linux_armv7l.whl#sha256=49e6d6e858b81a9cb06fd1e8dfb1a6813af3e81f6f471e1473a782a4063ca3eb (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,694 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp37-cp37m-linux_armv6l.whl#sha256=49e6d6e858b81a9cb06fd1e8dfb1a6813af3e81f6f471e1473a782a4063ca3eb (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,695 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp39-cp39-linux_armv7l.whl#sha256=5cfda4f30e6f90d0f14fdd9d401fec01a00d3b528b9cd88614bc3161a158087a (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,695 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp39-cp39-linux_armv6l.whl#sha256=5cfda4f30e6f90d0f14fdd9d401fec01a00d3b528b9cd88614bc3161a158087a (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,696 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp37-cp37m-linux_armv7l.whl#sha256=c9442c9129d171b9470330209ab7822af7bdaeaaae306c2c891597b1267bfec5 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,696 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp37-cp37m-linux_armv6l.whl#sha256=c9442c9129d171b9470330209ab7822af7bdaeaaae306c2c891597b1267bfec5 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,697 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp39-cp39-linux_armv7l.whl#sha256=47ab27371c794d3c80f75be7a95551af23c6e6a52f55acc0bf15aca71c443d0b (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,698 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp39-cp39-linux_armv6l.whl#sha256=47ab27371c794d3c80f75be7a95551af23c6e6a52f55acc0bf15aca71c443d0b (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,698 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp37-cp37m-linux_armv7l.whl#sha256=dff92724f2cf8b25319328fe3e99d42581794b289ae551733a6615c659395b84 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,699 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp37-cp37m-linux_armv6l.whl#sha256=dff92724f2cf8b25319328fe3e99d42581794b289ae551733a6615c659395b84 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,699 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp39-cp39-linux_armv7l.whl#sha256=bd751f2807a45f17c0e9676ccda12b6edbbebf475c170e3ec27044838f1d5b82 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,700 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp39-cp39-linux_armv6l.whl#sha256=bd751f2807a45f17c0e9676ccda12b6edbbebf475c170e3ec27044838f1d5b82 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,701 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv7l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,701 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv6l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,702 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv7l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,702 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv6l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,702 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp37-cp37m-linux_armv7l.whl#sha256=a27ba6f102f456ee697a94e3336dc27b59746723f1054ffdd4229bc85b007dd1 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,703 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp37-cp37m-linux_armv6l.whl#sha256=a27ba6f102f456ee697a94e3336dc27b59746723f1054ffdd4229bc85b007dd1 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,704 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp39-cp39-linux_armv7l.whl#sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,704 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp39-cp39-linux_armv6l.whl#sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,705 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv7l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,705 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv6l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,706 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv7l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,706 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv6l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,707 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv7l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,708 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv6l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,708 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv7l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,709 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv6l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,709 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv7l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,710 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv6l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,710 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,711 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,711 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,712 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-09-24T09:59:00,712 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:59:00,713 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:59:00,714 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:59:00,714 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-09-24T09:59:00,715 Skipping link: not a file: https://www.piwheels.org/simple/pmx-biobb/ 2023-09-24T09:59:00,715 Skipping link: not a file: https://pypi.org/simple/pmx-biobb/ 2023-09-24T09:59:00,735 Given no hashes to check 1 links for project 'pmx-biobb': discarding no candidates 2023-09-24T09:59:00,753 Collecting pmx-biobb==3.0.3 2023-09-24T09:59:00,755 Created temporary directory: /tmp/pip-unpack-etf7uox8 2023-09-24T09:59:01,229 Downloading pmx_biobb-3.0.3.tar.gz (5.3 MB) 2023-09-24T09:59:04,217 Added pmx-biobb==3.0.3 from https://files.pythonhosted.org/packages/6f/b2/61607c93aa5d3c34838e44ed7df748137d3b266a06a32b6d521a19ddedb4/pmx_biobb-3.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-uok59v2r' 2023-09-24T09:59:04,219 Running setup.py (path:/tmp/pip-wheel-cn6469s7/pmx-biobb_c07d72576c6d498495e4196d8e7e25ea/setup.py) egg_info for package pmx-biobb 2023-09-24T09:59:04,220 Created temporary directory: /tmp/pip-pip-egg-info-mzl_jiap 2023-09-24T09:59:04,220 Preparing metadata (setup.py): started 2023-09-24T09:59:04,221 Running command python setup.py egg_info 2023-09-24T09:59:05,288 running egg_info 2023-09-24T09:59:05,290 creating /tmp/pip-pip-egg-info-mzl_jiap/pmx_biobb.egg-info 2023-09-24T09:59:05,313 writing /tmp/pip-pip-egg-info-mzl_jiap/pmx_biobb.egg-info/PKG-INFO 2023-09-24T09:59:05,317 writing dependency_links to /tmp/pip-pip-egg-info-mzl_jiap/pmx_biobb.egg-info/dependency_links.txt 2023-09-24T09:59:05,319 writing entry points to /tmp/pip-pip-egg-info-mzl_jiap/pmx_biobb.egg-info/entry_points.txt 2023-09-24T09:59:05,320 writing requirements to /tmp/pip-pip-egg-info-mzl_jiap/pmx_biobb.egg-info/requires.txt 2023-09-24T09:59:05,321 writing top-level names to /tmp/pip-pip-egg-info-mzl_jiap/pmx_biobb.egg-info/top_level.txt 2023-09-24T09:59:05,322 writing manifest file '/tmp/pip-pip-egg-info-mzl_jiap/pmx_biobb.egg-info/SOURCES.txt' 2023-09-24T09:59:05,396 reading manifest file '/tmp/pip-pip-egg-info-mzl_jiap/pmx_biobb.egg-info/SOURCES.txt' 2023-09-24T09:59:05,397 reading manifest template 'MANIFEST.in' 2023-09-24T09:59:05,419 adding license file 'LICENSE' 2023-09-24T09:59:05,430 writing manifest file '/tmp/pip-pip-egg-info-mzl_jiap/pmx_biobb.egg-info/SOURCES.txt' 2023-09-24T09:59:05,538 Preparing metadata (setup.py): finished with status 'done' 2023-09-24T09:59:05,542 Source in /tmp/pip-wheel-cn6469s7/pmx-biobb_c07d72576c6d498495e4196d8e7e25ea has version 3.0.3, which satisfies requirement pmx-biobb==3.0.3 from https://files.pythonhosted.org/packages/6f/b2/61607c93aa5d3c34838e44ed7df748137d3b266a06a32b6d521a19ddedb4/pmx_biobb-3.0.3.tar.gz 2023-09-24T09:59:05,543 Removed pmx-biobb==3.0.3 from https://files.pythonhosted.org/packages/6f/b2/61607c93aa5d3c34838e44ed7df748137d3b266a06a32b6d521a19ddedb4/pmx_biobb-3.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-uok59v2r' 2023-09-24T09:59:05,549 Created temporary directory: /tmp/pip-unpack-k5sb3bwg 2023-09-24T09:59:05,550 Created temporary directory: /tmp/pip-unpack-1a2sx_ij 2023-09-24T09:59:05,555 Building wheels for collected packages: pmx-biobb 2023-09-24T09:59:05,559 Created temporary directory: /tmp/pip-wheel-10ga6lln 2023-09-24T09:59:05,560 Building wheel for pmx-biobb (setup.py): started 2023-09-24T09:59:05,561 Destination directory: /tmp/pip-wheel-10ga6lln 2023-09-24T09:59:05,562 Running command python setup.py bdist_wheel 2023-09-24T09:59:06,565 running bdist_wheel 2023-09-24T09:59:06,656 running build 2023-09-24T09:59:06,657 running build_py 2023-09-24T09:59:06,660 creating build 2023-09-24T09:59:06,661 creating build/lib.linux-armv7l-cpython-311 2023-09-24T09:59:06,661 creating build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,663 copying src/pmx/atom.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,665 copying src/pmx/options.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,668 copying src/pmx/xdrfile.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,669 copying src/pmx/gmx.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,671 copying src/pmx/mutdb.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,674 copying src/pmx/forcefield.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,677 copying src/pmx/xtc.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,679 copying src/pmx/library.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,683 copying src/pmx/geometry.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,685 copying src/pmx/alchemy.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,689 copying src/pmx/ligand_alchemy.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,694 copying src/pmx/jobscript.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,696 copying src/pmx/rotamer.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,698 copying src/pmx/rosetta.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,701 copying src/pmx/chain.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,703 copying src/pmx/molecule.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,706 copying src/pmx/utils.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,708 copying src/pmx/estimators.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,711 copying src/pmx/model.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,714 copying src/pmx/analysis.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,716 copying src/pmx/ffparser.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,718 copying src/pmx/builder.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,721 copying src/pmx/parser.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,723 copying src/pmx/_version.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,724 copying src/pmx/ndx.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,726 copying src/pmx/__init__.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,728 copying src/pmx/rosetta_analyze.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,730 copying src/pmx/atomselection.py -> build/lib.linux-armv7l-cpython-311/pmx 2023-09-24T09:59:06,732 running egg_info 2023-09-24T09:59:06,786 writing src/pmx_biobb.egg-info/PKG-INFO 2023-09-24T09:59:06,789 writing dependency_links to src/pmx_biobb.egg-info/dependency_links.txt 2023-09-24T09:59:06,790 writing entry points to src/pmx_biobb.egg-info/entry_points.txt 2023-09-24T09:59:06,792 writing requirements to src/pmx_biobb.egg-info/requires.txt 2023-09-24T09:59:06,793 writing top-level names to src/pmx_biobb.egg-info/top_level.txt 2023-09-24T09:59:06,820 reading manifest file 'src/pmx_biobb.egg-info/SOURCES.txt' 2023-09-24T09:59:06,828 reading manifest template 'MANIFEST.in' 2023-09-24T09:59:06,843 adding license file 'LICENSE' 2023-09-24T09:59:06,857 writing manifest file 'src/pmx_biobb.egg-info/SOURCES.txt' 2023-09-24T09:59:06,860 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.data' is absent from the `packages` configuration. 2023-09-24T09:59:06,861 !! 2023-09-24T09:59:06,862 ******************************************************************************** 2023-09-24T09:59:06,863 ############################ 2023-09-24T09:59:06,863 # Package would be ignored # 2023-09-24T09:59:06,864 ############################ 2023-09-24T09:59:06,864 Python recognizes 'pmx.data' as an importable package[^1], 2023-09-24T09:59:06,865 but it is absent from setuptools' `packages` configuration. 2023-09-24T09:59:06,866 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-24T09:59:06,866 package, please make sure that 'pmx.data' is explicitly added 2023-09-24T09:59:06,867 to the `packages` configuration field. 2023-09-24T09:59:06,868 Alternatively, you can also rely on setuptools' discovery methods 2023-09-24T09:59:06,868 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-24T09:59:06,868 instead of `find_packages(...)`/`find:`). 2023-09-24T09:59:06,869 You can read more about "package discovery" on setuptools documentation page: 2023-09-24T09:59:06,870 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-24T09:59:06,871 If you don't want 'pmx.data' to be distributed and are 2023-09-24T09:59:06,872 already explicitly excluding 'pmx.data' via 2023-09-24T09:59:06,872 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-24T09:59:06,872 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-24T09:59:06,873 combination with a more fine grained `package-data` configuration. 2023-09-24T09:59:06,873 You can read more about "package data files" on setuptools documentation page: 2023-09-24T09:59:06,874 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-24T09:59:06,876 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-24T09:59:06,876 even if it does not contain any `.py` files. 2023-09-24T09:59:06,876 On the other hand, currently there is no concept of package data 2023-09-24T09:59:06,877 directory, all directories are treated like packages. 2023-09-24T09:59:06,877 ******************************************************************************** 2023-09-24T09:59:06,879 !! 2023-09-24T09:59:06,879 check.warn(importable) 2023-09-24T09:59:06,880 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.data.mutff' is absent from the `packages` configuration. 2023-09-24T09:59:06,881 !! 2023-09-24T09:59:06,882 ******************************************************************************** 2023-09-24T09:59:06,882 ############################ 2023-09-24T09:59:06,883 # Package would be ignored # 2023-09-24T09:59:06,884 ############################ 2023-09-24T09:59:06,884 Python recognizes 'pmx.data.mutff' as an importable package[^1], 2023-09-24T09:59:06,885 but it is absent from setuptools' `packages` configuration. 2023-09-24T09:59:06,886 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-24T09:59:06,887 package, please make sure that 'pmx.data.mutff' is explicitly added 2023-09-24T09:59:06,887 to the `packages` configuration field. 2023-09-24T09:59:06,888 Alternatively, you can also rely on setuptools' discovery methods 2023-09-24T09:59:06,889 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-24T09:59:06,889 instead of `find_packages(...)`/`find:`). 2023-09-24T09:59:06,890 You can read more about "package discovery" on setuptools documentation page: 2023-09-24T09:59:06,891 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-24T09:59:06,892 If you don't want 'pmx.data.mutff' to be distributed and are 2023-09-24T09:59:06,893 already explicitly excluding 'pmx.data.mutff' via 2023-09-24T09:59:06,893 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-24T09:59:06,894 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-24T09:59:06,894 combination with a more fine grained `package-data` configuration. 2023-09-24T09:59:06,896 You can read more about "package data files" on setuptools documentation page: 2023-09-24T09:59:06,896 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-24T09:59:06,897 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-24T09:59:06,898 even if it does not contain any `.py` files. 2023-09-24T09:59:06,898 On the other hand, currently there is no concept of package data 2023-09-24T09:59:06,898 directory, all directories are treated like packages. 2023-09-24T09:59:06,899 ******************************************************************************** 2023-09-24T09:59:06,900 !! 2023-09-24T09:59:06,900 check.warn(importable) 2023-09-24T09:59:06,900 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.extensions.pmx' is absent from the `packages` configuration. 2023-09-24T09:59:06,901 !! 2023-09-24T09:59:06,902 ******************************************************************************** 2023-09-24T09:59:06,902 ############################ 2023-09-24T09:59:06,903 # Package would be ignored # 2023-09-24T09:59:06,903 ############################ 2023-09-24T09:59:06,904 Python recognizes 'pmx.extensions.pmx' as an importable package[^1], 2023-09-24T09:59:06,904 but it is absent from setuptools' `packages` configuration. 2023-09-24T09:59:06,905 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-24T09:59:06,905 package, please make sure that 'pmx.extensions.pmx' is explicitly added 2023-09-24T09:59:06,908 to the `packages` configuration field. 2023-09-24T09:59:06,910 Alternatively, you can also rely on setuptools' discovery methods 2023-09-24T09:59:06,914 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-24T09:59:06,914 instead of `find_packages(...)`/`find:`). 2023-09-24T09:59:06,916 You can read more about "package discovery" on setuptools documentation page: 2023-09-24T09:59:06,916 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-24T09:59:06,918 If you don't want 'pmx.extensions.pmx' to be distributed and are 2023-09-24T09:59:06,918 already explicitly excluding 'pmx.extensions.pmx' via 2023-09-24T09:59:06,919 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-24T09:59:06,919 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-24T09:59:06,920 combination with a more fine grained `package-data` configuration. 2023-09-24T09:59:06,921 You can read more about "package data files" on setuptools documentation page: 2023-09-24T09:59:06,922 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-24T09:59:06,924 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-24T09:59:06,924 even if it does not contain any `.py` files. 2023-09-24T09:59:06,925 On the other hand, currently there is no concept of package data 2023-09-24T09:59:06,925 directory, all directories are treated like packages. 2023-09-24T09:59:06,926 ******************************************************************************** 2023-09-24T09:59:06,927 !! 2023-09-24T09:59:06,928 check.warn(importable) 2023-09-24T09:59:06,928 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.extensions.xdr' is absent from the `packages` configuration. 2023-09-24T09:59:06,929 !! 2023-09-24T09:59:06,930 ******************************************************************************** 2023-09-24T09:59:06,931 ############################ 2023-09-24T09:59:06,931 # Package would be ignored # 2023-09-24T09:59:06,932 ############################ 2023-09-24T09:59:06,933 Python recognizes 'pmx.extensions.xdr' as an importable package[^1], 2023-09-24T09:59:06,933 but it is absent from setuptools' `packages` configuration. 2023-09-24T09:59:06,934 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-24T09:59:06,935 package, please make sure that 'pmx.extensions.xdr' is explicitly added 2023-09-24T09:59:06,935 to the `packages` configuration field. 2023-09-24T09:59:06,936 Alternatively, you can also rely on setuptools' discovery methods 2023-09-24T09:59:06,936 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-24T09:59:06,937 instead of `find_packages(...)`/`find:`). 2023-09-24T09:59:06,938 You can read more about "package discovery" on setuptools documentation page: 2023-09-24T09:59:06,938 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-24T09:59:06,939 If you don't want 'pmx.extensions.xdr' to be distributed and are 2023-09-24T09:59:06,940 already explicitly excluding 'pmx.extensions.xdr' via 2023-09-24T09:59:06,940 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-24T09:59:06,941 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-24T09:59:06,941 combination with a more fine grained `package-data` configuration. 2023-09-24T09:59:06,942 You can read more about "package data files" on setuptools documentation page: 2023-09-24T09:59:06,943 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-24T09:59:06,944 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-24T09:59:06,945 even if it does not contain any `.py` files. 2023-09-24T09:59:06,945 On the other hand, currently there is no concept of package data 2023-09-24T09:59:06,946 directory, all directories are treated like packages. 2023-09-24T09:59:06,947 ******************************************************************************** 2023-09-24T09:59:06,948 !! 2023-09-24T09:59:06,949 check.warn(importable) 2023-09-24T09:59:06,949 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.scripts' is absent from the `packages` configuration. 2023-09-24T09:59:06,950 !! 2023-09-24T09:59:06,951 ******************************************************************************** 2023-09-24T09:59:06,952 ############################ 2023-09-24T09:59:06,952 # Package would be ignored # 2023-09-24T09:59:06,953 ############################ 2023-09-24T09:59:06,953 Python recognizes 'pmx.scripts' as an importable package[^1], 2023-09-24T09:59:06,954 but it is absent from setuptools' `packages` configuration. 2023-09-24T09:59:06,955 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-24T09:59:06,956 package, please make sure that 'pmx.scripts' is explicitly added 2023-09-24T09:59:06,956 to the `packages` configuration field. 2023-09-24T09:59:06,957 Alternatively, you can also rely on setuptools' discovery methods 2023-09-24T09:59:06,958 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-24T09:59:06,959 instead of `find_packages(...)`/`find:`). 2023-09-24T09:59:06,960 You can read more about "package discovery" on setuptools documentation page: 2023-09-24T09:59:06,961 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-24T09:59:06,962 If you don't want 'pmx.scripts' to be distributed and are 2023-09-24T09:59:06,963 already explicitly excluding 'pmx.scripts' via 2023-09-24T09:59:06,964 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-24T09:59:06,964 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-24T09:59:06,965 combination with a more fine grained `package-data` configuration. 2023-09-24T09:59:06,966 You can read more about "package data files" on setuptools documentation page: 2023-09-24T09:59:06,967 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-24T09:59:06,969 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-24T09:59:06,969 even if it does not contain any `.py` files. 2023-09-24T09:59:06,969 On the other hand, currently there is no concept of package data 2023-09-24T09:59:06,970 directory, all directories are treated like packages. 2023-09-24T09:59:06,970 ******************************************************************************** 2023-09-24T09:59:06,971 !! 2023-09-24T09:59:06,972 check.warn(importable) 2023-09-24T09:59:06,972 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.scripts.icolos_entrypoints' is absent from the `packages` configuration. 2023-09-24T09:59:06,973 !! 2023-09-24T09:59:06,974 ******************************************************************************** 2023-09-24T09:59:06,974 ############################ 2023-09-24T09:59:06,975 # Package would be ignored # 2023-09-24T09:59:06,975 ############################ 2023-09-24T09:59:06,975 Python recognizes 'pmx.scripts.icolos_entrypoints' as an importable package[^1], 2023-09-24T09:59:06,976 but it is absent from setuptools' `packages` configuration. 2023-09-24T09:59:06,977 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-24T09:59:06,978 package, please make sure that 'pmx.scripts.icolos_entrypoints' is explicitly added 2023-09-24T09:59:06,978 to the `packages` configuration field. 2023-09-24T09:59:06,980 Alternatively, you can also rely on setuptools' discovery methods 2023-09-24T09:59:06,980 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-24T09:59:06,981 instead of `find_packages(...)`/`find:`). 2023-09-24T09:59:06,982 You can read more about "package discovery" on setuptools documentation page: 2023-09-24T09:59:06,984 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-24T09:59:06,985 If you don't want 'pmx.scripts.icolos_entrypoints' to be distributed and are 2023-09-24T09:59:06,986 already explicitly excluding 'pmx.scripts.icolos_entrypoints' via 2023-09-24T09:59:06,987 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-24T09:59:06,987 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-24T09:59:06,988 combination with a more fine grained `package-data` configuration. 2023-09-24T09:59:06,989 You can read more about "package data files" on setuptools documentation page: 2023-09-24T09:59:06,990 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-24T09:59:06,991 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-24T09:59:06,992 even if it does not contain any `.py` files. 2023-09-24T09:59:06,993 On the other hand, currently there is no concept of package data 2023-09-24T09:59:06,993 directory, all directories are treated like packages. 2023-09-24T09:59:06,994 ******************************************************************************** 2023-09-24T09:59:06,995 !! 2023-09-24T09:59:07,019 check.warn(importable) 2023-09-24T09:59:07,020 creating build/lib.linux-armv7l-cpython-311/pmx/data 2023-09-24T09:59:07,021 copying src/pmx/data/aminoacids.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data 2023-09-24T09:59:07,024 copying src/pmx/data/bbdep.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data 2023-09-24T09:59:07,186 copying src/pmx/data/blosum62_new.mat -> build/lib.linux-armv7l-cpython-311/pmx/data 2023-09-24T09:59:07,188 copying src/pmx/data/bp.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data 2023-09-24T09:59:07,193 copying src/pmx/data/bp_amber.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data 2023-09-24T09:59:07,198 copying src/pmx/data/bp_charmm.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data 2023-09-24T09:59:07,202 copying src/pmx/data/rna.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data 2023-09-24T09:59:07,205 creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff 2023-09-24T09:59:07,206 copying src/pmx/data/mutff/atommass.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff 2023-09-24T09:59:07,208 copying src/pmx/data/mutff/elements.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff 2023-09-24T09:59:07,210 copying src/pmx/data/mutff/residuetypes.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff 2023-09-24T09:59:07,213 copying src/pmx/data/mutff/spc216.gro -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff 2023-09-24T09:59:07,215 copying src/pmx/data/mutff/specbond.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff 2023-09-24T09:59:07,217 copying src/pmx/data/mutff/vdwradii.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff 2023-09-24T09:59:07,219 copying src/pmx/data/mutff/xlateat.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff 2023-09-24T09:59:07,221 creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,221 copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.am -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,224 copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.in -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,226 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,229 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,230 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,233 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,235 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,237 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,240 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,243 copying src/pmx/data/mutff/amber14sbmut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,245 copying src/pmx/data/mutff/amber14sbmut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,247 copying src/pmx/data/mutff/amber14sbmut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,249 copying src/pmx/data/mutff/amber14sbmut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,251 copying src/pmx/data/mutff/amber14sbmut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,254 copying src/pmx/data/mutff/amber14sbmut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,258 copying src/pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,261 copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,264 copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,266 copying src/pmx/data/mutff/amber14sbmut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,268 copying src/pmx/data/mutff/amber14sbmut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,270 copying src/pmx/data/mutff/amber14sbmut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,320 copying src/pmx/data/mutff/amber14sbmut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,341 copying src/pmx/data/mutff/amber14sbmut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,343 copying src/pmx/data/mutff/amber14sbmut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,346 copying src/pmx/data/mutff/amber14sbmut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,348 copying src/pmx/data/mutff/amber14sbmut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,351 copying src/pmx/data/mutff/amber14sbmut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,353 copying src/pmx/data/mutff/amber14sbmut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,356 copying src/pmx/data/mutff/amber14sbmut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,358 copying src/pmx/data/mutff/amber14sbmut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,360 copying src/pmx/data/mutff/amber14sbmut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,362 copying src/pmx/data/mutff/amber14sbmut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,365 copying src/pmx/data/mutff/amber14sbmut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,367 copying src/pmx/data/mutff/amber14sbmut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:07,369 creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,370 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,374 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,376 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,378 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,381 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,383 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,385 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,389 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,391 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,394 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,397 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,419 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,422 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,424 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,427 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,429 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,432 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,434 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,438 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,440 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,442 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,444 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,447 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,449 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,504 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,526 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,536 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,540 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,543 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,546 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,548 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,551 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,554 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,557 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,559 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,561 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,564 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,566 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,568 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,571 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,573 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:07,576 creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,577 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,579 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,581 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,584 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,586 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,588 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,592 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,594 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,597 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,600 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,629 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,632 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,634 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,636 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,638 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,641 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,643 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,647 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,649 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,651 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,653 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,655 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,657 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,703 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,724 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,732 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,737 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,739 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,742 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,744 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,746 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,749 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,753 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,755 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,757 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,759 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,761 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,763 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,765 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,767 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:07,768 creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,769 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,772 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,774 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,776 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,778 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,780 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,786 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,788 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,791 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,793 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,795 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,797 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,800 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,802 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,805 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,807 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,809 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,811 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,814 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,862 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,885 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,887 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,889 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,891 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,893 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,895 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,898 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,900 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,902 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,904 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,906 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,908 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:07,910 creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,911 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,915 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,917 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,920 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,922 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,924 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,928 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,930 copying src/pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,933 copying src/pmx/data/mutff/charmm22star-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,937 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,939 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,941 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,944 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,946 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,949 copying src/pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,953 copying src/pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,958 copying src/pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,962 copying src/pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,968 copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,971 copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,973 copying src/pmx/data/mutff/charmm22star-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,976 copying src/pmx/data/mutff/charmm22star-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,979 copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,981 copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,985 copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:07,987 copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:08,037 copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:08,057 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:08,059 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:08,061 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:08,063 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:08,065 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:08,067 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:08,070 copying src/pmx/data/mutff/charmm22star-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:08,072 copying src/pmx/data/mutff/charmm22star-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:08,074 copying src/pmx/data/mutff/charmm22star-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:08,076 copying src/pmx/data/mutff/charmm22star-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:08,078 copying src/pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:08,080 copying src/pmx/data/mutff/charmm22star-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:08,082 copying src/pmx/data/mutff/charmm22star-mut.ff/tips3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:08,084 copying src/pmx/data/mutff/charmm22star-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:08,086 creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,087 copying src/pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,090 copying src/pmx/data/mutff/charmm36m-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,094 copying src/pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,113 copying src/pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,141 copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,143 copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,145 copying src/pmx/data/mutff/charmm36m-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,147 copying src/pmx/data/mutff/charmm36m-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,149 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,151 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,153 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,156 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,158 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,160 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,182 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,184 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,186 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,230 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,249 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,257 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,261 copying src/pmx/data/mutff/charmm36m-mut.ff/nbfix.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,263 copying src/pmx/data/mutff/charmm36m-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,265 copying src/pmx/data/mutff/charmm36m-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,268 copying src/pmx/data/mutff/charmm36m-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,270 copying src/pmx/data/mutff/charmm36m-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,272 copying src/pmx/data/mutff/charmm36m-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:08,274 creating build/lib.linux-armv7l-cpython-311/pmx/extensions 2023-09-24T09:59:08,274 creating build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx 2023-09-24T09:59:08,275 copying src/pmx/extensions/pmx/Energy.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx 2023-09-24T09:59:08,278 copying src/pmx/extensions/pmx/Geometry.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx 2023-09-24T09:59:08,280 copying src/pmx/extensions/pmx/Geometry.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx 2023-09-24T09:59:08,283 copying src/pmx/extensions/pmx/cpp_test.cpp -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx 2023-09-24T09:59:08,285 copying src/pmx/extensions/pmx/init.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx 2023-09-24T09:59:08,288 copying src/pmx/extensions/pmx/pmx.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx 2023-09-24T09:59:08,290 copying src/pmx/extensions/pmx/wrap_Geometry.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx 2023-09-24T09:59:08,293 creating build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr 2023-09-24T09:59:08,294 copying src/pmx/extensions/xdr/trr2xtc.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr 2023-09-24T09:59:08,297 copying src/pmx/extensions/xdr/xdrfile.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr 2023-09-24T09:59:08,301 copying src/pmx/extensions/xdr/xdrfile.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr 2023-09-24T09:59:08,304 copying src/pmx/extensions/xdr/xdrfile_c_test.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr 2023-09-24T09:59:08,307 copying src/pmx/extensions/xdr/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr 2023-09-24T09:59:08,319 copying src/pmx/extensions/xdr/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr 2023-09-24T09:59:08,331 copying src/pmx/extensions/xdr/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr 2023-09-24T09:59:08,342 copying src/pmx/extensions/xdr/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr 2023-09-24T09:59:08,350 creating build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:59:08,352 copying src/pmx/scripts/__init__.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:59:08,357 copying src/pmx/scripts/analyze_dhdl.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:59:08,360 copying src/pmx/scripts/atomMapping.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:59:08,363 copying src/pmx/scripts/build_cyclic_top.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:59:08,366 copying src/pmx/scripts/cli.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:59:08,368 copying src/pmx/scripts/generate_hybrid_residue.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:59:08,372 copying src/pmx/scripts/generate_hybrid_topology.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:59:08,374 copying src/pmx/scripts/ligandHybrid.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:59:08,377 copying src/pmx/scripts/make_double_box.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:59:08,379 copying src/pmx/scripts/md_setup.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:59:08,382 copying src/pmx/scripts/mutate.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:59:08,385 copying src/pmx/scripts/prepare_crooks_runs.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:59:08,387 copying src/pmx/scripts/set_gmxlib.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:59:08,389 copying src/pmx/scripts/setup_abfe.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts 2023-09-24T09:59:08,392 creating build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints 2023-09-24T09:59:08,393 copying src/pmx/scripts/icolos_entrypoints/__init__.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints 2023-09-24T09:59:08,395 copying src/pmx/scripts/icolos_entrypoints/assemble_systems.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints 2023-09-24T09:59:08,399 UPDATING build/lib.linux-armv7l-cpython-311/pmx/_version.py 2023-09-24T09:59:08,400 set build/lib.linux-armv7l-cpython-311/pmx/_version.py to '3.0.3' 2023-09-24T09:59:08,400 running build_ext 2023-09-24T09:59:08,908 building 'pmx._pmx' extension 2023-09-24T09:59:08,908 creating build/temp.linux-armv7l-cpython-311 2023-09-24T09:59:08,909 creating build/temp.linux-armv7l-cpython-311/src 2023-09-24T09:59:08,909 creating build/temp.linux-armv7l-cpython-311/src/pmx 2023-09-24T09:59:08,910 creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions 2023-09-24T09:59:08,911 creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx 2023-09-24T09:59:08,912 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/Energy.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Energy.o 2023-09-24T09:59:10,047 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/Geometry.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Geometry.o 2023-09-24T09:59:10,447 src/pmx/extensions/pmx/Geometry.c: In function ‘spread_atoms_on_grid’: 2023-09-24T09:59:10,448 src/pmx/extensions/pmx/Geometry.c:527:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable] 2023-09-24T09:59:10,449 527 | int nx, ny, nz; 2023-09-24T09:59:10,450 | ^~ 2023-09-24T09:59:10,453 src/pmx/extensions/pmx/Geometry.c: In function ‘search_neighbors’: 2023-09-24T09:59:10,454 src/pmx/extensions/pmx/Geometry.c:586:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable] 2023-09-24T09:59:10,455 586 | int nx, ny, nz; 2023-09-24T09:59:10,456 | ^~ 2023-09-24T09:59:12,329 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/init.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/init.o 2023-09-24T09:59:12,721 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/wrap_Geometry.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/wrap_Geometry.o 2023-09-24T09:59:14,287 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Energy.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Geometry.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/init.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/wrap_Geometry.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/pmx/_pmx.cpython-311-arm-linux-gnueabihf.so 2023-09-24T09:59:14,415 building 'pmx._xdrio' extension 2023-09-24T09:59:14,416 creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr 2023-09-24T09:59:14,416 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.11 -c src/pmx/extensions/xdr/xdrfile.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile.o 2023-09-24T09:59:14,458 src/pmx/extensions/xdr/xdrfile.c:5:2: warning: "/*" within comment [-Wcomment] 2023-09-24T09:59:14,459 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-09-24T09:59:14,459 | 2023-09-24T09:59:14,549 In file included from src/pmx/extensions/xdr/xdrfile.c:60: 2023-09-24T09:59:14,549 src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-09-24T09:59:14,550 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-09-24T09:59:14,550 | 2023-09-24T09:59:14,558 src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofint’: 2023-09-24T09:59:14,558 src/pmx/extensions/xdr/xdrfile.c:499:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-24T09:59:14,559 499 | while (size >= num && num_of_bits < 32) 2023-09-24T09:59:14,559 | ^~ 2023-09-24T09:59:14,560 src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofints’: 2023-09-24T09:59:14,561 src/pmx/extensions/xdr/xdrfile.c:545:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-24T09:59:14,561 545 | while (bytes[num_of_bytes] >= num) 2023-09-24T09:59:14,562 | ^~ 2023-09-24T09:59:14,563 src/pmx/extensions/xdr/xdrfile.c: In function ‘encodeints’: 2023-09-24T09:59:14,563 src/pmx/extensions/xdr/xdrfile.c:654:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-24T09:59:14,564 654 | if (num_of_bits >= num_of_bytes * 8) 2023-09-24T09:59:14,565 | ^~ 2023-09-24T09:59:14,565 src/pmx/extensions/xdr/xdrfile.c:656:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-24T09:59:14,566 656 | for (i = 0; i < num_of_bytes; i++) 2023-09-24T09:59:14,567 | ^ 2023-09-24T09:59:14,568 src/pmx/extensions/xdr/xdrfile.c:664:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-24T09:59:14,568 664 | for (i = 0; i < num_of_bytes-1; i++) 2023-09-24T09:59:14,569 | ^ 2023-09-24T09:59:14,569 src/pmx/extensions/xdr/xdrfile.c: In function ‘decodebits’: 2023-09-24T09:59:14,570 src/pmx/extensions/xdr/xdrfile.c:704:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-24T09:59:14,570 704 | if (lastbits < num_of_bits) 2023-09-24T09:59:14,571 | ^ 2023-09-24T09:59:14,572 src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_float’: 2023-09-24T09:59:14,572 src/pmx/extensions/xdr/xdrfile.c:814:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-24T09:59:14,573 814 | if(size3>xfp->buf1size) 2023-09-24T09:59:14,574 | ^ 2023-09-24T09:59:14,574 src/pmx/extensions/xdr/xdrfile.c:866:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-24T09:59:14,575 866 | maxidx = (LASTIDXxfp->buf1size) 2023-09-24T09:59:14,582 | ^ 2023-09-24T09:59:14,586 src/pmx/extensions/xdr/xdrfile.c:1133:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-24T09:59:14,587 1133 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) 2023-09-24T09:59:14,587 | ^ 2023-09-24T09:59:14,588 src/pmx/extensions/xdr/xdrfile.c:1139:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-24T09:59:14,588 1139 | maxidx = (LASTIDXxfp->buf1size) 2023-09-24T09:59:14,599 | ^ 2023-09-24T09:59:14,601 src/pmx/extensions/xdr/xdrfile.c:1366:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-24T09:59:14,601 1366 | maxidx = (LASTIDXxfp->buf1size) { 2023-09-24T09:59:14,612 | ^ 2023-09-24T09:59:14,619 src/pmx/extensions/xdr/xdrfile.c:1617:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-24T09:59:14,619 1617 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { 2023-09-24T09:59:14,620 | ^ 2023-09-24T09:59:14,620 src/pmx/extensions/xdr/xdrfile.c:1622:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-24T09:59:14,621 1622 | maxidx = (LASTIDX build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:18,349 copying build/lib.linux-armv7l-cpython-311/pmx/options.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:18,351 copying build/lib.linux-armv7l-cpython-311/pmx/xdrfile.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:18,354 copying build/lib.linux-armv7l-cpython-311/pmx/gmx.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:18,356 copying build/lib.linux-armv7l-cpython-311/pmx/mutdb.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:18,358 creating build/bdist.linux-armv7l/wheel/pmx/extensions 2023-09-24T09:59:18,360 creating build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-09-24T09:59:18,361 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-09-24T09:59:18,363 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_c_test.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-09-24T09:59:18,365 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-09-24T09:59:18,368 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-09-24T09:59:18,370 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-09-24T09:59:18,372 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/trr2xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-09-24T09:59:18,374 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-09-24T09:59:18,377 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-09-24T09:59:18,380 creating build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-09-24T09:59:18,381 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/cpp_test.cpp -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-09-24T09:59:18,383 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/init.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-09-24T09:59:18,385 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Energy.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-09-24T09:59:18,387 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/pmx.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-09-24T09:59:18,390 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/wrap_Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-09-24T09:59:18,392 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-09-24T09:59:18,395 copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Geometry.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-09-24T09:59:18,397 copying build/lib.linux-armv7l-cpython-311/pmx/forcefield.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:18,402 copying build/lib.linux-armv7l-cpython-311/pmx/xtc.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:18,404 copying build/lib.linux-armv7l-cpython-311/pmx/library.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:18,409 copying build/lib.linux-armv7l-cpython-311/pmx/geometry.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:18,411 copying build/lib.linux-armv7l-cpython-311/pmx/alchemy.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:18,415 copying build/lib.linux-armv7l-cpython-311/pmx/ligand_alchemy.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:18,420 copying build/lib.linux-armv7l-cpython-311/pmx/jobscript.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:18,422 copying build/lib.linux-armv7l-cpython-311/pmx/rotamer.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:18,424 copying build/lib.linux-armv7l-cpython-311/pmx/rosetta.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:18,427 copying build/lib.linux-armv7l-cpython-311/pmx/chain.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:18,430 copying build/lib.linux-armv7l-cpython-311/pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:18,434 creating build/bdist.linux-armv7l/wheel/pmx/data 2023-09-24T09:59:18,435 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-09-24T09:59:18,436 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/specbond.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-09-24T09:59:18,438 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/vdwradii.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-09-24T09:59:18,440 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/spc216.gro -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-09-24T09:59:18,444 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,445 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,446 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,448 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,450 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,451 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tips3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,453 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,456 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,458 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,460 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,462 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,464 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,518 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,522 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,525 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,527 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,529 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,531 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,533 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,535 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,539 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,542 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,544 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,565 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,567 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,570 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,572 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,574 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,577 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,579 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,582 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,584 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/lipids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,587 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,589 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/lipids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,591 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,593 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,596 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,600 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,603 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,605 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,607 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,609 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-09-24T09:59:18,611 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/xlateat.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-09-24T09:59:18,613 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/elements.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-09-24T09:59:18,616 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,617 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,619 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,621 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,623 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,625 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,628 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,630 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,632 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,634 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,637 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,639 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,641 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,696 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,700 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,703 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,705 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,708 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,739 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,741 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,744 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,746 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,748 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,753 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,756 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,758 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,760 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,763 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,766 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,769 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,771 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,774 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,776 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-09-24T09:59:18,778 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/atommass.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-09-24T09:59:18,781 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,782 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,785 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,787 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,789 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,792 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,794 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,796 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,798 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/Makefile.am -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,800 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,802 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/Makefile.in -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,805 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,809 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,811 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,813 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,890 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,894 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,897 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,899 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,901 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,922 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,924 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,926 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,928 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,930 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,934 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,937 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,939 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,941 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,943 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,946 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,949 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,951 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,953 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,955 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-09-24T09:59:18,957 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/residuetypes.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-09-24T09:59:18,961 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:18,962 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:18,964 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:18,967 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:18,969 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:18,971 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:18,998 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,000 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,003 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,006 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,008 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,010 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,013 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,015 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,018 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,068 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,071 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,073 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,075 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,077 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,079 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,099 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,100 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,105 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,106 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,108 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,110 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,113 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,116 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,124 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,126 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,128 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,129 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,132 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,134 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,136 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,139 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,141 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,143 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,145 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,147 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-09-24T09:59:19,149 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,150 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,152 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,154 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,156 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,158 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,177 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,180 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,183 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,185 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,186 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,189 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,192 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,194 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,196 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,241 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,244 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,246 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,249 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,250 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,252 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,271 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,274 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,278 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,280 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,282 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,284 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,287 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,290 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,297 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,300 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,301 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,303 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,306 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,308 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,310 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,312 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,315 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,317 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,319 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,321 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,323 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-09-24T09:59:19,325 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,326 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,328 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,330 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,333 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,335 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,336 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,338 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,385 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,405 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,407 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,409 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/nbfix.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,411 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,413 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,417 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,447 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,451 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,453 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,455 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,457 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,478 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,485 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,487 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,489 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,491 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,493 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,521 copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-09-24T09:59:19,524 copying build/lib.linux-armv7l-cpython-311/pmx/data/bp_amber.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-09-24T09:59:19,528 copying build/lib.linux-armv7l-cpython-311/pmx/data/bp.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-09-24T09:59:19,533 copying build/lib.linux-armv7l-cpython-311/pmx/data/bp_charmm.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-09-24T09:59:19,537 copying build/lib.linux-armv7l-cpython-311/pmx/data/bbdep.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-09-24T09:59:19,820 copying build/lib.linux-armv7l-cpython-311/pmx/data/aminoacids.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-09-24T09:59:19,826 copying build/lib.linux-armv7l-cpython-311/pmx/data/rna.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-09-24T09:59:19,830 copying build/lib.linux-armv7l-cpython-311/pmx/data/blosum62_new.mat -> build/bdist.linux-armv7l/wheel/pmx/data 2023-09-24T09:59:19,832 copying build/lib.linux-armv7l-cpython-311/pmx/_pmx.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:19,837 copying build/lib.linux-armv7l-cpython-311/pmx/molecule.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:19,840 copying build/lib.linux-armv7l-cpython-311/pmx/utils.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:19,843 copying build/lib.linux-armv7l-cpython-311/pmx/estimators.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:19,846 copying build/lib.linux-armv7l-cpython-311/pmx/model.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:19,849 copying build/lib.linux-armv7l-cpython-311/pmx/analysis.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:19,851 copying build/lib.linux-armv7l-cpython-311/pmx/ffparser.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:19,855 creating build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:59:19,856 creating build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints 2023-09-24T09:59:19,857 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints 2023-09-24T09:59:19,858 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints/assemble_systems.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints 2023-09-24T09:59:19,861 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/analyze_dhdl.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:59:19,863 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/setup_abfe.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:59:19,866 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/set_gmxlib.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:59:19,868 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligandHybrid.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:59:19,870 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/md_setup.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:59:19,873 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/make_double_box.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:59:19,876 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/cli.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:59:19,878 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/generate_hybrid_residue.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:59:19,882 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/build_cyclic_top.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:59:19,885 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/mutate.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:59:19,888 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/atomMapping.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:59:19,891 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/generate_hybrid_topology.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:59:19,893 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:59:19,895 copying build/lib.linux-armv7l-cpython-311/pmx/scripts/prepare_crooks_runs.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-09-24T09:59:19,897 copying build/lib.linux-armv7l-cpython-311/pmx/builder.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:19,900 copying build/lib.linux-armv7l-cpython-311/pmx/parser.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:19,903 copying build/lib.linux-armv7l-cpython-311/pmx/_version.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:19,905 copying build/lib.linux-armv7l-cpython-311/pmx/ndx.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:19,908 copying build/lib.linux-armv7l-cpython-311/pmx/__init__.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:19,910 copying build/lib.linux-armv7l-cpython-311/pmx/rosetta_analyze.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:19,913 copying build/lib.linux-armv7l-cpython-311/pmx/atomselection.py -> build/bdist.linux-armv7l/wheel/pmx 2023-09-24T09:59:19,916 running install_egg_info 2023-09-24T09:59:19,946 Copying src/pmx_biobb.egg-info to build/bdist.linux-armv7l/wheel/pmx_biobb-3.0.3-py3.11.egg-info 2023-09-24T09:59:19,960 running install_scripts 2023-09-24T09:59:20,012 creating build/bdist.linux-armv7l/wheel/pmx_biobb-3.0.3.dist-info/WHEEL 2023-09-24T09:59:20,015 creating '/tmp/pip-wheel-10ga6lln/pmx_biobb-3.0.3-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-24T09:59:20,018 adding 'pmx/__init__.py' 2023-09-24T09:59:20,053 adding 'pmx/_pmx.cpython-311-arm-linux-gnueabihf.so' 2023-09-24T09:59:20,056 adding 'pmx/_version.py' 2023-09-24T09:59:20,078 adding 'pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so' 2023-09-24T09:59:20,086 adding 'pmx/alchemy.py' 2023-09-24T09:59:20,089 adding 'pmx/analysis.py' 2023-09-24T09:59:20,091 adding 'pmx/atom.py' 2023-09-24T09:59:20,093 adding 'pmx/atomselection.py' 2023-09-24T09:59:20,095 adding 'pmx/builder.py' 2023-09-24T09:59:20,099 adding 'pmx/chain.py' 2023-09-24T09:59:20,102 adding 'pmx/estimators.py' 2023-09-24T09:59:20,105 adding 'pmx/ffparser.py' 2023-09-24T09:59:20,114 adding 'pmx/forcefield.py' 2023-09-24T09:59:20,116 adding 'pmx/geometry.py' 2023-09-24T09:59:20,118 adding 'pmx/gmx.py' 2023-09-24T09:59:20,120 adding 'pmx/jobscript.py' 2023-09-24T09:59:20,128 adding 'pmx/library.py' 2023-09-24T09:59:20,141 adding 'pmx/ligand_alchemy.py' 2023-09-24T09:59:20,147 adding 'pmx/model.py' 2023-09-24T09:59:20,150 adding 'pmx/molecule.py' 2023-09-24T09:59:20,152 adding 'pmx/mutdb.py' 2023-09-24T09:59:20,154 adding 'pmx/ndx.py' 2023-09-24T09:59:20,156 adding 'pmx/options.py' 2023-09-24T09:59:20,158 adding 'pmx/parser.py' 2023-09-24T09:59:20,160 adding 'pmx/rosetta.py' 2023-09-24T09:59:20,162 adding 'pmx/rosetta_analyze.py' 2023-09-24T09:59:20,164 adding 'pmx/rotamer.py' 2023-09-24T09:59:20,167 adding 'pmx/utils.py' 2023-09-24T09:59:20,169 adding 'pmx/xdrfile.py' 2023-09-24T09:59:20,170 adding 'pmx/xtc.py' 2023-09-24T09:59:20,196 adding 'pmx/data/aminoacids.pkl' 2023-09-24T09:59:22,001 adding 'pmx/data/bbdep.pkl' 2023-09-24T09:59:22,141 adding 'pmx/data/blosum62_new.mat' 2023-09-24T09:59:22,156 adding 'pmx/data/bp.pkl' 2023-09-24T09:59:22,177 adding 'pmx/data/bp_amber.pkl' 2023-09-24T09:59:22,197 adding 'pmx/data/bp_charmm.pkl' 2023-09-24T09:59:22,206 adding 'pmx/data/rna.pkl' 2023-09-24T09:59:22,209 adding 'pmx/data/mutff/atommass.dat' 2023-09-24T09:59:22,211 adding 'pmx/data/mutff/elements.dat' 2023-09-24T09:59:22,212 adding 'pmx/data/mutff/residuetypes.dat' 2023-09-24T09:59:22,218 adding 'pmx/data/mutff/spc216.gro' 2023-09-24T09:59:22,220 adding 'pmx/data/mutff/specbond.dat' 2023-09-24T09:59:22,221 adding 'pmx/data/mutff/vdwradii.dat' 2023-09-24T09:59:22,222 adding 'pmx/data/mutff/xlateat.dat' 2023-09-24T09:59:22,224 adding 'pmx/data/mutff/amber14sbmut.ff/Makefile.am' 2023-09-24T09:59:22,227 adding 'pmx/data/mutff/amber14sbmut.ff/Makefile.in' 2023-09-24T09:59:22,229 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.arn' 2023-09-24T09:59:22,230 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb' 2023-09-24T09:59:22,231 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb' 2023-09-24T09:59:22,232 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb' 2023-09-24T09:59:22,234 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b' 2023-09-24T09:59:22,240 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp' 2023-09-24T09:59:22,242 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd' 2023-09-24T09:59:22,244 adding 'pmx/data/mutff/amber14sbmut.ff/atomtypes.atp' 2023-09-24T09:59:22,245 adding 'pmx/data/mutff/amber14sbmut.ff/dna.arn' 2023-09-24T09:59:22,246 adding 'pmx/data/mutff/amber14sbmut.ff/dna.hdb' 2023-09-24T09:59:22,247 adding 'pmx/data/mutff/amber14sbmut.ff/dna.r2b' 2023-09-24T09:59:22,250 adding 'pmx/data/mutff/amber14sbmut.ff/dna.rtp' 2023-09-24T09:59:22,257 adding 'pmx/data/mutff/amber14sbmut.ff/ffbonded.itp' 2023-09-24T09:59:22,259 adding 'pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp' 2023-09-24T09:59:22,260 adding 'pmx/data/mutff/amber14sbmut.ff/forcefield.doc' 2023-09-24T09:59:22,261 adding 'pmx/data/mutff/amber14sbmut.ff/forcefield.itp' 2023-09-24T09:59:22,262 adding 'pmx/data/mutff/amber14sbmut.ff/gbsa.itp' 2023-09-24T09:59:22,264 adding 'pmx/data/mutff/amber14sbmut.ff/ions.itp' 2023-09-24T09:59:22,440 adding 'pmx/data/mutff/amber14sbmut.ff/mutres.mtp' 2023-09-24T09:59:22,530 adding 'pmx/data/mutff/amber14sbmut.ff/mutres.rtp' 2023-09-24T09:59:22,541 adding 'pmx/data/mutff/amber14sbmut.ff/rna.arn' 2023-09-24T09:59:22,543 adding 'pmx/data/mutff/amber14sbmut.ff/rna.hdb' 2023-09-24T09:59:22,544 adding 'pmx/data/mutff/amber14sbmut.ff/rna.r2b' 2023-09-24T09:59:22,547 adding 'pmx/data/mutff/amber14sbmut.ff/rna.rtp' 2023-09-24T09:59:22,549 adding 'pmx/data/mutff/amber14sbmut.ff/spc.itp' 2023-09-24T09:59:22,551 adding 'pmx/data/mutff/amber14sbmut.ff/spce.itp' 2023-09-24T09:59:22,552 adding 'pmx/data/mutff/amber14sbmut.ff/tip3p.itp' 2023-09-24T09:59:22,554 adding 'pmx/data/mutff/amber14sbmut.ff/tip4p.itp' 2023-09-24T09:59:22,556 adding 'pmx/data/mutff/amber14sbmut.ff/tip4pew.itp' 2023-09-24T09:59:22,558 adding 'pmx/data/mutff/amber14sbmut.ff/tip5p.itp' 2023-09-24T09:59:22,560 adding 'pmx/data/mutff/amber14sbmut.ff/urea.itp' 2023-09-24T09:59:22,562 adding 'pmx/data/mutff/amber14sbmut.ff/watermodels.dat' 2023-09-24T09:59:22,568 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn' 2023-09-24T09:59:22,570 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup' 2023-09-24T09:59:22,572 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb' 2023-09-24T09:59:22,575 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb' 2023-09-24T09:59:22,577 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb' 2023-09-24T09:59:22,579 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b' 2023-09-24T09:59:22,589 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp' 2023-09-24T09:59:22,593 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd' 2023-09-24T09:59:22,596 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp' 2023-09-24T09:59:22,601 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp' 2023-09-24T09:59:22,663 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres' 2023-09-24T09:59:22,676 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp' 2023-09-24T09:59:22,678 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn' 2023-09-24T09:59:22,679 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb' 2023-09-24T09:59:22,680 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b' 2023-09-24T09:59:22,683 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp' 2023-09-24T09:59:22,685 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp' 2023-09-24T09:59:22,689 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp' 2023-09-24T09:59:22,691 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp' 2023-09-24T09:59:22,692 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc' 2023-09-24T09:59:22,694 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp' 2023-09-24T09:59:22,695 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp' 2023-09-24T09:59:22,696 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp' 2023-09-24T09:59:22,851 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp' 2023-09-24T09:59:22,933 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp' 2023-09-24T09:59:22,960 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp' 2023-09-24T09:59:22,970 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp' 2023-09-24T09:59:22,973 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp' 2023-09-24T09:59:22,976 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp' 2023-09-24T09:59:22,977 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn' 2023-09-24T09:59:22,978 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb' 2023-09-24T09:59:22,979 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b' 2023-09-24T09:59:22,981 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp' 2023-09-24T09:59:22,983 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp' 2023-09-24T09:59:22,984 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp' 2023-09-24T09:59:22,985 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp' 2023-09-24T09:59:22,986 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp' 2023-09-24T09:59:22,987 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp' 2023-09-24T09:59:22,989 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp' 2023-09-24T09:59:22,990 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp' 2023-09-24T09:59:22,991 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat' 2023-09-24T09:59:22,993 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn' 2023-09-24T09:59:22,994 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb' 2023-09-24T09:59:22,996 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb' 2023-09-24T09:59:22,997 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb' 2023-09-24T09:59:22,998 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b' 2023-09-24T09:59:23,006 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp' 2023-09-24T09:59:23,008 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd' 2023-09-24T09:59:23,010 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp' 2023-09-24T09:59:23,014 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp' 2023-09-24T09:59:23,075 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres' 2023-09-24T09:59:23,088 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp' 2023-09-24T09:59:23,089 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn' 2023-09-24T09:59:23,091 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb' 2023-09-24T09:59:23,092 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b' 2023-09-24T09:59:23,094 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp' 2023-09-24T09:59:23,096 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp' 2023-09-24T09:59:23,100 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp' 2023-09-24T09:59:23,102 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp' 2023-09-24T09:59:23,103 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc' 2023-09-24T09:59:23,104 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp' 2023-09-24T09:59:23,105 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp' 2023-09-24T09:59:23,107 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp' 2023-09-24T09:59:23,262 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp' 2023-09-24T09:59:23,343 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp' 2023-09-24T09:59:23,370 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp' 2023-09-24T09:59:23,380 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp' 2023-09-24T09:59:23,383 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp' 2023-09-24T09:59:23,386 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp' 2023-09-24T09:59:23,387 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn' 2023-09-24T09:59:23,388 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb' 2023-09-24T09:59:23,390 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b' 2023-09-24T09:59:23,392 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp' 2023-09-24T09:59:23,393 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp' 2023-09-24T09:59:23,394 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp' 2023-09-24T09:59:23,396 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp' 2023-09-24T09:59:23,397 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp' 2023-09-24T09:59:23,398 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp' 2023-09-24T09:59:23,399 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp' 2023-09-24T09:59:23,400 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp' 2023-09-24T09:59:23,401 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat' 2023-09-24T09:59:23,404 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn' 2023-09-24T09:59:23,406 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb' 2023-09-24T09:59:23,407 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb' 2023-09-24T09:59:23,408 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb' 2023-09-24T09:59:23,409 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b' 2023-09-24T09:59:23,418 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp' 2023-09-24T09:59:23,420 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd' 2023-09-24T09:59:23,422 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp' 2023-09-24T09:59:23,423 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn' 2023-09-24T09:59:23,424 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb' 2023-09-24T09:59:23,425 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b' 2023-09-24T09:59:23,427 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp' 2023-09-24T09:59:23,431 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp' 2023-09-24T09:59:23,433 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp' 2023-09-24T09:59:23,434 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc' 2023-09-24T09:59:23,436 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp' 2023-09-24T09:59:23,437 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp' 2023-09-24T09:59:23,438 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp' 2023-09-24T09:59:23,624 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp' 2023-09-24T09:59:23,721 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp' 2023-09-24T09:59:23,733 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn' 2023-09-24T09:59:23,734 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb' 2023-09-24T09:59:23,736 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b' 2023-09-24T09:59:23,738 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp' 2023-09-24T09:59:23,739 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp' 2023-09-24T09:59:23,741 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp' 2023-09-24T09:59:23,742 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp' 2023-09-24T09:59:23,743 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp' 2023-09-24T09:59:23,744 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp' 2023-09-24T09:59:23,746 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp' 2023-09-24T09:59:23,747 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp' 2023-09-24T09:59:23,748 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat' 2023-09-24T09:59:23,750 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn' 2023-09-24T09:59:23,752 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb' 2023-09-24T09:59:23,753 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb' 2023-09-24T09:59:23,754 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb' 2023-09-24T09:59:23,755 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b' 2023-09-24T09:59:23,759 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp' 2023-09-24T09:59:23,761 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd' 2023-09-24T09:59:23,763 adding 'pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp' 2023-09-24T09:59:23,768 adding 'pmx/data/mutff/charmm22star-mut.ff/cmap.itp' 2023-09-24T09:59:23,769 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.arn' 2023-09-24T09:59:23,770 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb' 2023-09-24T09:59:23,771 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.hdb' 2023-09-24T09:59:23,772 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb' 2023-09-24T09:59:23,774 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.rtp' 2023-09-24T09:59:23,781 adding 'pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp' 2023-09-24T09:59:23,788 adding 'pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp' 2023-09-24T09:59:23,793 adding 'pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp' 2023-09-24T09:59:23,805 adding 'pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp' 2023-09-24T09:59:23,807 adding 'pmx/data/mutff/charmm22star-mut.ff/forcefield.doc' 2023-09-24T09:59:23,808 adding 'pmx/data/mutff/charmm22star-mut.ff/forcefield.itp' 2023-09-24T09:59:23,810 adding 'pmx/data/mutff/charmm22star-mut.ff/gb.itp' 2023-09-24T09:59:23,811 adding 'pmx/data/mutff/charmm22star-mut.ff/ions.itp' 2023-09-24T09:59:23,812 adding 'pmx/data/mutff/charmm22star-mut.ff/lipids.hdb' 2023-09-24T09:59:23,816 adding 'pmx/data/mutff/charmm22star-mut.ff/lipids.rtp' 2023-09-24T09:59:23,817 adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.arn' 2023-09-24T09:59:23,968 adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.mtp' 2023-09-24T09:59:24,049 adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.rtp' 2023-09-24T09:59:24,059 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.arn' 2023-09-24T09:59:24,060 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb' 2023-09-24T09:59:24,061 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.hdb' 2023-09-24T09:59:24,063 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb' 2023-09-24T09:59:24,064 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.r2b' 2023-09-24T09:59:24,065 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.rtp' 2023-09-24T09:59:24,067 adding 'pmx/data/mutff/charmm22star-mut.ff/spc.itp' 2023-09-24T09:59:24,068 adding 'pmx/data/mutff/charmm22star-mut.ff/spce.itp' 2023-09-24T09:59:24,069 adding 'pmx/data/mutff/charmm22star-mut.ff/tip3p.itp' 2023-09-24T09:59:24,070 adding 'pmx/data/mutff/charmm22star-mut.ff/tip4p.itp' 2023-09-24T09:59:24,071 adding 'pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp' 2023-09-24T09:59:24,073 adding 'pmx/data/mutff/charmm22star-mut.ff/tip5p.itp' 2023-09-24T09:59:24,074 adding 'pmx/data/mutff/charmm22star-mut.ff/tips3p.itp' 2023-09-24T09:59:24,075 adding 'pmx/data/mutff/charmm22star-mut.ff/watermodels.dat' 2023-09-24T09:59:24,079 adding 'pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp' 2023-09-24T09:59:24,091 adding 'pmx/data/mutff/charmm36m-mut.ff/cmap.itp' 2023-09-24T09:59:24,175 adding 'pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp' 2023-09-24T09:59:24,303 adding 'pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp' 2023-09-24T09:59:24,318 adding 'pmx/data/mutff/charmm36m-mut.ff/forcefield.doc' 2023-09-24T09:59:24,319 adding 'pmx/data/mutff/charmm36m-mut.ff/forcefield.itp' 2023-09-24T09:59:24,321 adding 'pmx/data/mutff/charmm36m-mut.ff/gb.itp' 2023-09-24T09:59:24,322 adding 'pmx/data/mutff/charmm36m-mut.ff/ions.itp' 2023-09-24T09:59:24,323 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.arn' 2023-09-24T09:59:24,324 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb' 2023-09-24T09:59:24,326 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.hdb' 2023-09-24T09:59:24,327 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb' 2023-09-24T09:59:24,329 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.r2b' 2023-09-24T09:59:24,465 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.rtp' 2023-09-24T09:59:24,476 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.vsd' 2023-09-24T09:59:24,477 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.arn' 2023-09-24T09:59:24,642 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.mtp' 2023-09-24T09:59:24,730 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.rtp' 2023-09-24T09:59:24,757 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp' 2023-09-24T09:59:24,767 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp' 2023-09-24T09:59:24,769 adding 'pmx/data/mutff/charmm36m-mut.ff/nbfix.itp' 2023-09-24T09:59:24,770 adding 'pmx/data/mutff/charmm36m-mut.ff/spc.itp' 2023-09-24T09:59:24,771 adding 'pmx/data/mutff/charmm36m-mut.ff/spce.itp' 2023-09-24T09:59:24,772 adding 'pmx/data/mutff/charmm36m-mut.ff/tip3p.itp' 2023-09-24T09:59:24,773 adding 'pmx/data/mutff/charmm36m-mut.ff/tip4p.itp' 2023-09-24T09:59:24,774 adding 'pmx/data/mutff/charmm36m-mut.ff/watermodels.dat' 2023-09-24T09:59:24,777 adding 'pmx/extensions/pmx/Energy.c' 2023-09-24T09:59:24,780 adding 'pmx/extensions/pmx/Geometry.c' 2023-09-24T09:59:24,783 adding 'pmx/extensions/pmx/Geometry.h' 2023-09-24T09:59:24,784 adding 'pmx/extensions/pmx/cpp_test.cpp' 2023-09-24T09:59:24,786 adding 'pmx/extensions/pmx/init.c' 2023-09-24T09:59:24,787 adding 'pmx/extensions/pmx/pmx.h' 2023-09-24T09:59:24,789 adding 'pmx/extensions/pmx/wrap_Geometry.c' 2023-09-24T09:59:24,792 adding 'pmx/extensions/xdr/trr2xtc.c' 2023-09-24T09:59:24,798 adding 'pmx/extensions/xdr/xdrfile.c' 2023-09-24T09:59:24,801 adding 'pmx/extensions/xdr/xdrfile.h' 2023-09-24T09:59:24,803 adding 'pmx/extensions/xdr/xdrfile_c_test.c' 2023-09-24T09:59:24,805 adding 'pmx/extensions/xdr/xdrfile_trr.c' 2023-09-24T09:59:24,806 adding 'pmx/extensions/xdr/xdrfile_trr.h' 2023-09-24T09:59:24,808 adding 'pmx/extensions/xdr/xdrfile_xtc.c' 2023-09-24T09:59:24,809 adding 'pmx/extensions/xdr/xdrfile_xtc.h' 2023-09-24T09:59:24,811 adding 'pmx/scripts/__init__.py' 2023-09-24T09:59:24,814 adding 'pmx/scripts/analyze_dhdl.py' 2023-09-24T09:59:24,816 adding 'pmx/scripts/atomMapping.py' 2023-09-24T09:59:24,818 adding 'pmx/scripts/build_cyclic_top.py' 2023-09-24T09:59:24,820 adding 'pmx/scripts/cli.py' 2023-09-24T09:59:24,827 adding 'pmx/scripts/generate_hybrid_residue.py' 2023-09-24T09:59:24,829 adding 'pmx/scripts/generate_hybrid_topology.py' 2023-09-24T09:59:24,831 adding 'pmx/scripts/ligandHybrid.py' 2023-09-24T09:59:24,832 adding 'pmx/scripts/make_double_box.py' 2023-09-24T09:59:24,835 adding 'pmx/scripts/md_setup.py' 2023-09-24T09:59:24,838 adding 'pmx/scripts/mutate.py' 2023-09-24T09:59:24,839 adding 'pmx/scripts/prepare_crooks_runs.py' 2023-09-24T09:59:24,841 adding 'pmx/scripts/set_gmxlib.py' 2023-09-24T09:59:24,843 adding 'pmx/scripts/setup_abfe.py' 2023-09-24T09:59:24,845 adding 'pmx/scripts/icolos_entrypoints/__init__.py' 2023-09-24T09:59:24,846 adding 'pmx/scripts/icolos_entrypoints/assemble_systems.py' 2023-09-24T09:59:24,849 adding 'pmx_biobb-3.0.3.dist-info/LICENSE' 2023-09-24T09:59:24,850 adding 'pmx_biobb-3.0.3.dist-info/METADATA' 2023-09-24T09:59:24,851 adding 'pmx_biobb-3.0.3.dist-info/WHEEL' 2023-09-24T09:59:24,852 adding 'pmx_biobb-3.0.3.dist-info/entry_points.txt' 2023-09-24T09:59:24,853 adding 'pmx_biobb-3.0.3.dist-info/top_level.txt' 2023-09-24T09:59:24,857 adding 'pmx_biobb-3.0.3.dist-info/RECORD' 2023-09-24T09:59:24,928 removing build/bdist.linux-armv7l/wheel 2023-09-24T09:59:25,155 Building wheel for pmx-biobb (setup.py): finished with status 'done' 2023-09-24T09:59:25,227 Created wheel for pmx-biobb: filename=pmx_biobb-3.0.3-cp311-cp311-linux_armv7l.whl size=5908834 sha256=7e73de5f2261d43b7ce076f78698fe893948d8d7cc9c88c7ee3def9a035a4e68 2023-09-24T09:59:25,228 Stored in directory: /tmp/pip-ephem-wheel-cache-4l3mwbe1/wheels/d3/5c/4f/cff1985dd82839272be6ab3400a4a03cfbe38c58727b605b43 2023-09-24T09:59:25,248 Successfully built pmx-biobb 2023-09-24T09:59:25,397 Removed build tracker: '/tmp/pip-build-tracker-uok59v2r'