2023-09-24T22:52:31,594 Created temporary directory: /tmp/pip-build-tracker-sam1d2wy
2023-09-24T22:52:31,595 Initialized build tracking at /tmp/pip-build-tracker-sam1d2wy
2023-09-24T22:52:31,596 Created build tracker: /tmp/pip-build-tracker-sam1d2wy
2023-09-24T22:52:31,596 Entered build tracker: /tmp/pip-build-tracker-sam1d2wy
2023-09-24T22:52:31,597 Created temporary directory: /tmp/pip-wheel-ajy94kzm
2023-09-24T22:52:31,600 Created temporary directory: /tmp/pip-ephem-wheel-cache-2uvzqzoi
2023-09-24T22:52:31,622 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-24T22:52:31,626 2 location(s) to search for versions of pmx-biobb:
2023-09-24T22:52:31,626 * https://pypi.org/simple/pmx-biobb/
2023-09-24T22:52:31,626 * https://www.piwheels.org/simple/pmx-biobb/
2023-09-24T22:52:31,627 Fetching project page and analyzing links: https://pypi.org/simple/pmx-biobb/
2023-09-24T22:52:31,628 Getting page https://pypi.org/simple/pmx-biobb/
2023-09-24T22:52:31,629 Found index url https://pypi.org/simple/
2023-09-24T22:52:31,889 Fetched page https://pypi.org/simple/pmx-biobb/ as application/vnd.pypi.simple.v1+json
2023-09-24T22:52:31,895   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/ea/0e/652070bd7d0ca56047ee9da48bdce6ad248973b822b5fe7d931c07a93625/pmx_biobb-1.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T22:52:31,896   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T22:52:31,896   Skipping link: 1.0.0 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T22:52:31,897   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/5b/2f2f6e34ed256b51485f1313f89aeb9647a2df056fad635dc6c69354a142/pmx_biobb-1.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T22:52:31,898   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T22:52:31,899   Skipping link: 1.0.1 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T22:52:31,899   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/dc/26/88efc470b39ed04650850696ca8d4c1777e1f1788960a41b063c4f9f64cc/pmx_biobb-2.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:31,900   Found link https://files.pythonhosted.org/packages/32/7c/dd656cd2d785a7b9815e0ca54fb9bec35c258cdc058d9450726e65bc201c/pmx_biobb-2.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 2.0.0
2023-09-24T22:52:31,901   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/73/a2/51564515b8b81b725a8aa81b962e040e66d59ce4637be894cf02315fc403/pmx_biobb-3.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:31,901   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/e7/93/4fac73a6fe156e0940953662d457f0424e847a9546db1c10a7bbad5d3642/pmx_biobb-3.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:31,902   Found link https://files.pythonhosted.org/packages/3c/b8/7dcc8b482f02b8ff26aa1a9819fd389f9cc01087954d968e156a073ea4ac/pmx_biobb-3.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.1
2023-09-24T22:52:31,903   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/c4/2a/c00053a2535945c6900b99621be5c40437e939c64f36ea7d14e3bb5febbe/pmx_biobb-3.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:31,904   Found link https://files.pythonhosted.org/packages/8a/0b/e7b469ecf2b337e713cafe136f826f79709c9940a4d3a1eb00a669657af0/pmx_biobb-3.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.2
2023-09-24T22:52:31,905   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/8a/70/3744fd3fd4d13d0fcd04c50740aa9584ba6c5b7eb43e1a4dd65a7c223cf2/pmx_biobb-3.0.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:31,906   Found link https://files.pythonhosted.org/packages/6f/b2/61607c93aa5d3c34838e44ed7df748137d3b266a06a32b6d521a19ddedb4/pmx_biobb-3.0.3.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.3
2023-09-24T22:52:31,906   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/34/3e/e0a91c21ec82ca2108ec1f20c6f9fb0feb3e83b1d9277b2b521b43e77067/pmx_biobb-4.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:31,907   Found link https://files.pythonhosted.org/packages/d3/ee/61a98e8a9a4a1d5ab8ea32a2712cc1dfb3d7326a8404fcbd3347b28fab4d/pmx_biobb-4.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.0
2023-09-24T22:52:31,908   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/cf/d3/2cac189bd5b21c71cb79a57bf2f38121a2ecc930294758e3565302de7d21/pmx_biobb-4.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:31,909   Found link https://files.pythonhosted.org/packages/b9/64/0a7b31944dfae299db2a1da0949f82c4843cbc8ee4abb2f2b3f716d38640/pmx_biobb-4.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.1
2023-09-24T22:52:31,909   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/6d/c32f57cf60dce3b6835df798488a8e6980ca6e2865723f9e1c9551a8bff3/pmx_biobb-4.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:31,910   Found link https://files.pythonhosted.org/packages/1e/f1/377ebcaabe3ae496f4e58c434464cc6899d7a1a6287abea0ac19c9a84f38/pmx_biobb-4.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.2
2023-09-24T22:52:31,911   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/21/d8/92f5da41c0ccee7807122989b44711b075159e3129707c40a469a5333825/pmx_biobb-4.1.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:31,912   Found link https://files.pythonhosted.org/packages/de/e6/7e0419f8305191fb52c09e3f36db33fa8e37e029e6e2d0c361cb384cfefa/pmx_biobb-4.1.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.1.2
2023-09-24T22:52:31,912   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/8f/b7/67894a846ff237417e009dd532d744eff5fd675e98ccb50e27fda4c145e1/pmx_biobb-4.1.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:31,913   Found link https://files.pythonhosted.org/packages/ff/3a/d6a0cec96cc00189a683995a26e729c9d09e503129b35192923c46bd93ed/pmx_biobb-4.1.3.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.1.3
2023-09-24T22:52:31,914 Fetching project page and analyzing links: https://www.piwheels.org/simple/pmx-biobb/
2023-09-24T22:52:31,915 Getting page https://www.piwheels.org/simple/pmx-biobb/
2023-09-24T22:52:31,916 Found index url https://www.piwheels.org/simple/
2023-09-24T22:52:32,076 Fetched page https://www.piwheels.org/simple/pmx-biobb/ as text/html
2023-09-24T22:52:32,089   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp39-cp39-linux_armv7l.whl#sha256=53bd7ffc22fe4dae9200c2f72b9650e77d4ab7809ecb0219685e7429222e7b43 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,090   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp39-cp39-linux_armv6l.whl#sha256=53bd7ffc22fe4dae9200c2f72b9650e77d4ab7809ecb0219685e7429222e7b43 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,090   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp37-cp37m-linux_armv7l.whl#sha256=49e6d6e858b81a9cb06fd1e8dfb1a6813af3e81f6f471e1473a782a4063ca3eb (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,091   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp37-cp37m-linux_armv6l.whl#sha256=49e6d6e858b81a9cb06fd1e8dfb1a6813af3e81f6f471e1473a782a4063ca3eb (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,091   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp39-cp39-linux_armv7l.whl#sha256=5cfda4f30e6f90d0f14fdd9d401fec01a00d3b528b9cd88614bc3161a158087a (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,092   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp39-cp39-linux_armv6l.whl#sha256=5cfda4f30e6f90d0f14fdd9d401fec01a00d3b528b9cd88614bc3161a158087a (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,092   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp37-cp37m-linux_armv7l.whl#sha256=c9442c9129d171b9470330209ab7822af7bdaeaaae306c2c891597b1267bfec5 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,093   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp37-cp37m-linux_armv6l.whl#sha256=c9442c9129d171b9470330209ab7822af7bdaeaaae306c2c891597b1267bfec5 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,093   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp39-cp39-linux_armv7l.whl#sha256=47ab27371c794d3c80f75be7a95551af23c6e6a52f55acc0bf15aca71c443d0b (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,094   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp39-cp39-linux_armv6l.whl#sha256=47ab27371c794d3c80f75be7a95551af23c6e6a52f55acc0bf15aca71c443d0b (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,095   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp37-cp37m-linux_armv7l.whl#sha256=dff92724f2cf8b25319328fe3e99d42581794b289ae551733a6615c659395b84 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,096   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp37-cp37m-linux_armv6l.whl#sha256=dff92724f2cf8b25319328fe3e99d42581794b289ae551733a6615c659395b84 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,096   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp39-cp39-linux_armv7l.whl#sha256=bd751f2807a45f17c0e9676ccda12b6edbbebf475c170e3ec27044838f1d5b82 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,097   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp39-cp39-linux_armv6l.whl#sha256=bd751f2807a45f17c0e9676ccda12b6edbbebf475c170e3ec27044838f1d5b82 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,098   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv7l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,098   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv6l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,099   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv7l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,099   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv6l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,100   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp37-cp37m-linux_armv7l.whl#sha256=a27ba6f102f456ee697a94e3336dc27b59746723f1054ffdd4229bc85b007dd1 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,100   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp37-cp37m-linux_armv6l.whl#sha256=a27ba6f102f456ee697a94e3336dc27b59746723f1054ffdd4229bc85b007dd1 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,101   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp311-cp311-linux_armv7l.whl#sha256=7e73de5f2261d43b7ce076f78698fe893948d8d7cc9c88c7ee3def9a035a4e68 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,101   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp311-cp311-linux_armv6l.whl#sha256=7e73de5f2261d43b7ce076f78698fe893948d8d7cc9c88c7ee3def9a035a4e68 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,102   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp39-cp39-linux_armv7l.whl#sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,102   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp39-cp39-linux_armv6l.whl#sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,103   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv7l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,103   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv6l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,104   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv7l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,105   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv6l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,105   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv7l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,106   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv6l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,106   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp311-cp311-linux_armv7l.whl#sha256=c2f9b6cb2cb584c68d74d0ee760d79c627644692dc8371d1189026b09a9dc068 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,107   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp311-cp311-linux_armv6l.whl#sha256=c2f9b6cb2cb584c68d74d0ee760d79c627644692dc8371d1189026b09a9dc068 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,107   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv7l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,108   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv6l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,108   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv7l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,109   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv6l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,109   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,110   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,110   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,111   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T22:52:32,112   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T22:52:32,112   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T22:52:32,113   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T22:52:32,113   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T22:52:32,114 Skipping link: not a file: https://www.piwheels.org/simple/pmx-biobb/
2023-09-24T22:52:32,114 Skipping link: not a file: https://pypi.org/simple/pmx-biobb/
2023-09-24T22:52:32,133 Given no hashes to check 1 links for project 'pmx-biobb': discarding no candidates
2023-09-24T22:52:32,151 Collecting pmx-biobb==4.0.0
2023-09-24T22:52:32,154   Created temporary directory: /tmp/pip-unpack-zf9hlke6
2023-09-24T22:52:32,953   Downloading pmx_biobb-4.0.0.tar.gz (3.8 MB)
2023-09-24T22:52:34,993   Added pmx-biobb==4.0.0 from https://files.pythonhosted.org/packages/d3/ee/61a98e8a9a4a1d5ab8ea32a2712cc1dfb3d7326a8404fcbd3347b28fab4d/pmx_biobb-4.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-sam1d2wy'
2023-09-24T22:52:34,995   Running setup.py (path:/tmp/pip-wheel-ajy94kzm/pmx-biobb_70a56c1f9b3246e2b9064b6655e9d097/setup.py) egg_info for package pmx-biobb
2023-09-24T22:52:34,996   Created temporary directory: /tmp/pip-pip-egg-info-jng7j279
2023-09-24T22:52:34,997   Preparing metadata (setup.py): started
2023-09-24T22:52:34,998   Running command python setup.py egg_info
2023-09-24T22:52:35,719   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-09-24T22:52:35,720   !!

2023-09-24T22:52:35,721           ********************************************************************************
2023-09-24T22:52:35,721           Requirements should be satisfied by a PEP 517 installer.
2023-09-24T22:52:35,722           If you are using pip, you can try `pip install --use-pep517`.
2023-09-24T22:52:35,723           ********************************************************************************

2023-09-24T22:52:35,724   !!
2023-09-24T22:52:35,724     dist.fetch_build_eggs(dist.setup_requires)
2023-09-24T22:52:39,685   running egg_info
2023-09-24T22:52:39,687   creating /tmp/pip-pip-egg-info-jng7j279/pmx_biobb.egg-info
2023-09-24T22:52:39,712   writing /tmp/pip-pip-egg-info-jng7j279/pmx_biobb.egg-info/PKG-INFO
2023-09-24T22:52:39,716   writing dependency_links to /tmp/pip-pip-egg-info-jng7j279/pmx_biobb.egg-info/dependency_links.txt
2023-09-24T22:52:39,717   writing entry points to /tmp/pip-pip-egg-info-jng7j279/pmx_biobb.egg-info/entry_points.txt
2023-09-24T22:52:39,719   writing requirements to /tmp/pip-pip-egg-info-jng7j279/pmx_biobb.egg-info/requires.txt
2023-09-24T22:52:39,720   writing top-level names to /tmp/pip-pip-egg-info-jng7j279/pmx_biobb.egg-info/top_level.txt
2023-09-24T22:52:39,721   writing manifest file '/tmp/pip-pip-egg-info-jng7j279/pmx_biobb.egg-info/SOURCES.txt'
2023-09-24T22:52:39,799   reading manifest file '/tmp/pip-pip-egg-info-jng7j279/pmx_biobb.egg-info/SOURCES.txt'
2023-09-24T22:52:39,800   reading manifest template 'MANIFEST.in'
2023-09-24T22:52:39,818   adding license file 'LICENSE'
2023-09-24T22:52:39,826   writing manifest file '/tmp/pip-pip-egg-info-jng7j279/pmx_biobb.egg-info/SOURCES.txt'
2023-09-24T22:52:39,937   Preparing metadata (setup.py): finished with status 'done'
2023-09-24T22:52:39,941   Source in /tmp/pip-wheel-ajy94kzm/pmx-biobb_70a56c1f9b3246e2b9064b6655e9d097 has version 4.0.0, which satisfies requirement pmx-biobb==4.0.0 from https://files.pythonhosted.org/packages/d3/ee/61a98e8a9a4a1d5ab8ea32a2712cc1dfb3d7326a8404fcbd3347b28fab4d/pmx_biobb-4.0.0.tar.gz
2023-09-24T22:52:39,942   Removed pmx-biobb==4.0.0 from https://files.pythonhosted.org/packages/d3/ee/61a98e8a9a4a1d5ab8ea32a2712cc1dfb3d7326a8404fcbd3347b28fab4d/pmx_biobb-4.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-sam1d2wy'
2023-09-24T22:52:39,948 Created temporary directory: /tmp/pip-unpack-w3fy73vs
2023-09-24T22:52:39,949 Created temporary directory: /tmp/pip-unpack-tnjj2bs8
2023-09-24T22:52:39,954 Building wheels for collected packages: pmx-biobb
2023-09-24T22:52:39,958   Created temporary directory: /tmp/pip-wheel-vo80ehfj
2023-09-24T22:52:39,959   Building wheel for pmx-biobb (setup.py): started
2023-09-24T22:52:39,960   Destination directory: /tmp/pip-wheel-vo80ehfj
2023-09-24T22:52:39,961   Running command python setup.py bdist_wheel
2023-09-24T22:52:40,651   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-09-24T22:52:40,651   !!

2023-09-24T22:52:40,652           ********************************************************************************
2023-09-24T22:52:40,653           Requirements should be satisfied by a PEP 517 installer.
2023-09-24T22:52:40,653           If you are using pip, you can try `pip install --use-pep517`.
2023-09-24T22:52:40,654           ********************************************************************************

2023-09-24T22:52:40,655   !!
2023-09-24T22:52:40,655     dist.fetch_build_eggs(dist.setup_requires)
2023-09-24T22:52:41,078   running bdist_wheel
2023-09-24T22:52:41,181   running build
2023-09-24T22:52:41,181   running build_py
2023-09-24T22:52:41,184   creating build
2023-09-24T22:52:41,185   creating build/lib.linux-armv7l-cpython-311
2023-09-24T22:52:41,186   creating build/lib.linux-armv7l-cpython-311/pmx
2023-09-24T22:52:41,187   copying src/pmx/_version.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-24T22:52:41,189   running egg_info
2023-09-24T22:52:41,240   writing src/pmx_biobb.egg-info/PKG-INFO
2023-09-24T22:52:41,243   writing dependency_links to src/pmx_biobb.egg-info/dependency_links.txt
2023-09-24T22:52:41,244   writing entry points to src/pmx_biobb.egg-info/entry_points.txt
2023-09-24T22:52:41,246   writing requirements to src/pmx_biobb.egg-info/requires.txt
2023-09-24T22:52:41,247   writing top-level names to src/pmx_biobb.egg-info/top_level.txt
2023-09-24T22:52:41,275   reading manifest file 'src/pmx_biobb.egg-info/SOURCES.txt'
2023-09-24T22:52:41,282   reading manifest template 'MANIFEST.in'
2023-09-24T22:52:41,294   adding license file 'LICENSE'
2023-09-24T22:52:41,305   writing manifest file 'src/pmx_biobb.egg-info/SOURCES.txt'
2023-09-24T22:52:41,308   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.data' is absent from the `packages` configuration.
2023-09-24T22:52:41,308   !!

2023-09-24T22:52:41,309           ********************************************************************************
2023-09-24T22:52:41,310           ############################
2023-09-24T22:52:41,310           # Package would be ignored #
2023-09-24T22:52:41,311           ############################
2023-09-24T22:52:41,311           Python recognizes 'pmx.data' as an importable package[^1],
2023-09-24T22:52:41,312           but it is absent from setuptools' `packages` configuration.

2023-09-24T22:52:41,313           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-24T22:52:41,313           package, please make sure that 'pmx.data' is explicitly added
2023-09-24T22:52:41,314           to the `packages` configuration field.

2023-09-24T22:52:41,314           Alternatively, you can also rely on setuptools' discovery methods
2023-09-24T22:52:41,315           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-24T22:52:41,315           instead of `find_packages(...)`/`find:`).

2023-09-24T22:52:41,316           You can read more about "package discovery" on setuptools documentation page:

2023-09-24T22:52:41,317           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-24T22:52:41,318           If you don't want 'pmx.data' to be distributed and are
2023-09-24T22:52:41,318           already explicitly excluding 'pmx.data' via
2023-09-24T22:52:41,319           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-24T22:52:41,319           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-24T22:52:41,320           combination with a more fine grained `package-data` configuration.

2023-09-24T22:52:41,321           You can read more about "package data files" on setuptools documentation page:

2023-09-24T22:52:41,321           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-24T22:52:41,323           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-24T22:52:41,323                 even if it does not contain any `.py` files.
2023-09-24T22:52:41,324                 On the other hand, currently there is no concept of package data
2023-09-24T22:52:41,324                 directory, all directories are treated like packages.
2023-09-24T22:52:41,325           ********************************************************************************

2023-09-24T22:52:41,325   !!
2023-09-24T22:52:41,326     check.warn(importable)
2023-09-24T22:52:41,326   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.data.mutff45' is absent from the `packages` configuration.
2023-09-24T22:52:41,327   !!

2023-09-24T22:52:41,328           ********************************************************************************
2023-09-24T22:52:41,328           ############################
2023-09-24T22:52:41,329           # Package would be ignored #
2023-09-24T22:52:41,329           ############################
2023-09-24T22:52:41,329           Python recognizes 'pmx.data.mutff45' as an importable package[^1],
2023-09-24T22:52:41,330           but it is absent from setuptools' `packages` configuration.

2023-09-24T22:52:41,331           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-24T22:52:41,331           package, please make sure that 'pmx.data.mutff45' is explicitly added
2023-09-24T22:52:41,332           to the `packages` configuration field.

2023-09-24T22:52:41,332           Alternatively, you can also rely on setuptools' discovery methods
2023-09-24T22:52:41,333           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-24T22:52:41,333           instead of `find_packages(...)`/`find:`).

2023-09-24T22:52:41,334           You can read more about "package discovery" on setuptools documentation page:

2023-09-24T22:52:41,335           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-24T22:52:41,336           If you don't want 'pmx.data.mutff45' to be distributed and are
2023-09-24T22:52:41,337           already explicitly excluding 'pmx.data.mutff45' via
2023-09-24T22:52:41,337           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-24T22:52:41,338           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-24T22:52:41,338           combination with a more fine grained `package-data` configuration.

2023-09-24T22:52:41,340           You can read more about "package data files" on setuptools documentation page:

2023-09-24T22:52:41,341           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-24T22:52:41,342           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-24T22:52:41,342                 even if it does not contain any `.py` files.
2023-09-24T22:52:41,343                 On the other hand, currently there is no concept of package data
2023-09-24T22:52:41,343                 directory, all directories are treated like packages.
2023-09-24T22:52:41,344           ********************************************************************************

2023-09-24T22:52:41,345   !!
2023-09-24T22:52:41,345     check.warn(importable)
2023-09-24T22:52:41,345   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.data.mutff45dna' is absent from the `packages` configuration.
2023-09-24T22:52:41,346   !!

2023-09-24T22:52:41,347           ********************************************************************************
2023-09-24T22:52:41,347           ############################
2023-09-24T22:52:41,348           # Package would be ignored #
2023-09-24T22:52:41,348           ############################
2023-09-24T22:52:41,349           Python recognizes 'pmx.data.mutff45dna' as an importable package[^1],
2023-09-24T22:52:41,349           but it is absent from setuptools' `packages` configuration.

2023-09-24T22:52:41,350           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-24T22:52:41,351           package, please make sure that 'pmx.data.mutff45dna' is explicitly added
2023-09-24T22:52:41,351           to the `packages` configuration field.

2023-09-24T22:52:41,352           Alternatively, you can also rely on setuptools' discovery methods
2023-09-24T22:52:41,353           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-24T22:52:41,353           instead of `find_packages(...)`/`find:`).

2023-09-24T22:52:41,354           You can read more about "package discovery" on setuptools documentation page:

2023-09-24T22:52:41,355           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-24T22:52:41,357           If you don't want 'pmx.data.mutff45dna' to be distributed and are
2023-09-24T22:52:41,357           already explicitly excluding 'pmx.data.mutff45dna' via
2023-09-24T22:52:41,358           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-24T22:52:41,358           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-24T22:52:41,358           combination with a more fine grained `package-data` configuration.

2023-09-24T22:52:41,360           You can read more about "package data files" on setuptools documentation page:

2023-09-24T22:52:41,361           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-24T22:52:41,362           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-24T22:52:41,363                 even if it does not contain any `.py` files.
2023-09-24T22:52:41,364                 On the other hand, currently there is no concept of package data
2023-09-24T22:52:41,364                 directory, all directories are treated like packages.
2023-09-24T22:52:41,365           ********************************************************************************

2023-09-24T22:52:41,366   !!
2023-09-24T22:52:41,366     check.warn(importable)
2023-09-24T22:52:41,367   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.extensions.pmx' is absent from the `packages` configuration.
2023-09-24T22:52:41,367   !!

2023-09-24T22:52:41,368           ********************************************************************************
2023-09-24T22:52:41,369           ############################
2023-09-24T22:52:41,370           # Package would be ignored #
2023-09-24T22:52:41,370           ############################
2023-09-24T22:52:41,371           Python recognizes 'pmx.extensions.pmx' as an importable package[^1],
2023-09-24T22:52:41,371           but it is absent from setuptools' `packages` configuration.

2023-09-24T22:52:41,372           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-24T22:52:41,372           package, please make sure that 'pmx.extensions.pmx' is explicitly added
2023-09-24T22:52:41,373           to the `packages` configuration field.

2023-09-24T22:52:41,374           Alternatively, you can also rely on setuptools' discovery methods
2023-09-24T22:52:41,374           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-24T22:52:41,375           instead of `find_packages(...)`/`find:`).

2023-09-24T22:52:41,376           You can read more about "package discovery" on setuptools documentation page:

2023-09-24T22:52:41,377           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-24T22:52:41,378           If you don't want 'pmx.extensions.pmx' to be distributed and are
2023-09-24T22:52:41,378           already explicitly excluding 'pmx.extensions.pmx' via
2023-09-24T22:52:41,379           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-24T22:52:41,379           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-24T22:52:41,380           combination with a more fine grained `package-data` configuration.

2023-09-24T22:52:41,381           You can read more about "package data files" on setuptools documentation page:

2023-09-24T22:52:41,382           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-24T22:52:41,383           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-24T22:52:41,383                 even if it does not contain any `.py` files.
2023-09-24T22:52:41,384                 On the other hand, currently there is no concept of package data
2023-09-24T22:52:41,384                 directory, all directories are treated like packages.
2023-09-24T22:52:41,385           ********************************************************************************

2023-09-24T22:52:41,386   !!
2023-09-24T22:52:41,386     check.warn(importable)
2023-09-24T22:52:41,387   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.extensions.xdr' is absent from the `packages` configuration.
2023-09-24T22:52:41,388   !!

2023-09-24T22:52:41,389           ********************************************************************************
2023-09-24T22:52:41,389           ############################
2023-09-24T22:52:41,390           # Package would be ignored #
2023-09-24T22:52:41,390           ############################
2023-09-24T22:52:41,391           Python recognizes 'pmx.extensions.xdr' as an importable package[^1],
2023-09-24T22:52:41,391           but it is absent from setuptools' `packages` configuration.

2023-09-24T22:52:41,392           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-24T22:52:41,393           package, please make sure that 'pmx.extensions.xdr' is explicitly added
2023-09-24T22:52:41,393           to the `packages` configuration field.

2023-09-24T22:52:41,394           Alternatively, you can also rely on setuptools' discovery methods
2023-09-24T22:52:41,395           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-24T22:52:41,396           instead of `find_packages(...)`/`find:`).

2023-09-24T22:52:41,397           You can read more about "package discovery" on setuptools documentation page:

2023-09-24T22:52:41,398           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-24T22:52:41,399           If you don't want 'pmx.extensions.xdr' to be distributed and are
2023-09-24T22:52:41,399           already explicitly excluding 'pmx.extensions.xdr' via
2023-09-24T22:52:41,400           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-24T22:52:41,400           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-24T22:52:41,401           combination with a more fine grained `package-data` configuration.

2023-09-24T22:52:41,402           You can read more about "package data files" on setuptools documentation page:

2023-09-24T22:52:41,403           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-24T22:52:41,404           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-24T22:52:41,405                 even if it does not contain any `.py` files.
2023-09-24T22:52:41,405                 On the other hand, currently there is no concept of package data
2023-09-24T22:52:41,406                 directory, all directories are treated like packages.
2023-09-24T22:52:41,406           ********************************************************************************

2023-09-24T22:52:41,407   !!
2023-09-24T22:52:41,408     check.warn(importable)
2023-09-24T22:52:41,408   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.scripts' is absent from the `packages` configuration.
2023-09-24T22:52:41,409   !!

2023-09-24T22:52:41,410           ********************************************************************************
2023-09-24T22:52:41,410           ############################
2023-09-24T22:52:41,411           # Package would be ignored #
2023-09-24T22:52:41,411           ############################
2023-09-24T22:52:41,412           Python recognizes 'pmx.scripts' as an importable package[^1],
2023-09-24T22:52:41,420           but it is absent from setuptools' `packages` configuration.

2023-09-24T22:52:41,447           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-24T22:52:41,466           package, please make sure that 'pmx.scripts' is explicitly added
2023-09-24T22:52:41,495           to the `packages` configuration field.

2023-09-24T22:52:41,534           Alternatively, you can also rely on setuptools' discovery methods
2023-09-24T22:52:41,562           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-24T22:52:41,585           instead of `find_packages(...)`/`find:`).

2023-09-24T22:52:41,587           You can read more about "package discovery" on setuptools documentation page:

2023-09-24T22:52:41,588           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-24T22:52:41,590           If you don't want 'pmx.scripts' to be distributed and are
2023-09-24T22:52:41,590           already explicitly excluding 'pmx.scripts' via
2023-09-24T22:52:41,591           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-24T22:52:41,591           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-24T22:52:41,592           combination with a more fine grained `package-data` configuration.

2023-09-24T22:52:41,593           You can read more about "package data files" on setuptools documentation page:

2023-09-24T22:52:41,594           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-24T22:52:41,596           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-24T22:52:41,597                 even if it does not contain any `.py` files.
2023-09-24T22:52:41,597                 On the other hand, currently there is no concept of package data
2023-09-24T22:52:41,598                 directory, all directories are treated like packages.
2023-09-24T22:52:41,598           ********************************************************************************

2023-09-24T22:52:41,599   !!
2023-09-24T22:52:41,600     check.warn(importable)
2023-09-24T22:52:41,601   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.scripts.ligands' is absent from the `packages` configuration.
2023-09-24T22:52:41,602   !!

2023-09-24T22:52:41,604           ********************************************************************************
2023-09-24T22:52:41,605           ############################
2023-09-24T22:52:41,608           # Package would be ignored #
2023-09-24T22:52:41,608           ############################
2023-09-24T22:52:41,609           Python recognizes 'pmx.scripts.ligands' as an importable package[^1],
2023-09-24T22:52:41,609           but it is absent from setuptools' `packages` configuration.

2023-09-24T22:52:41,611           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-24T22:52:41,613           package, please make sure that 'pmx.scripts.ligands' is explicitly added
2023-09-24T22:52:41,614           to the `packages` configuration field.

2023-09-24T22:52:41,615           Alternatively, you can also rely on setuptools' discovery methods
2023-09-24T22:52:41,615           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-24T22:52:41,617           instead of `find_packages(...)`/`find:`).

2023-09-24T22:52:41,618           You can read more about "package discovery" on setuptools documentation page:

2023-09-24T22:52:41,619           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-24T22:52:41,620           If you don't want 'pmx.scripts.ligands' to be distributed and are
2023-09-24T22:52:41,621           already explicitly excluding 'pmx.scripts.ligands' via
2023-09-24T22:52:41,621           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-24T22:52:41,622           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-24T22:52:41,623           combination with a more fine grained `package-data` configuration.

2023-09-24T22:52:41,624           You can read more about "package data files" on setuptools documentation page:

2023-09-24T22:52:41,625           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-24T22:52:41,627           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-24T22:52:41,628                 even if it does not contain any `.py` files.
2023-09-24T22:52:41,628                 On the other hand, currently there is no concept of package data
2023-09-24T22:52:41,629                 directory, all directories are treated like packages.
2023-09-24T22:52:41,630           ********************************************************************************

2023-09-24T22:52:41,630   !!
2023-09-24T22:52:41,631     check.warn(importable)
2023-09-24T22:52:41,631   creating build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-24T22:52:41,632   copying src/pmx/data/bbdep.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-24T22:52:41,633   copying src/pmx/data/blosum62_new.mat -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-24T22:52:41,633   copying src/pmx/data/bp.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-24T22:52:41,634   copying src/pmx/data/bp_amber.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-24T22:52:41,634   copying src/pmx/data/bp_charmm.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-24T22:52:41,635   copying src/pmx/data/rna.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-24T22:52:41,635   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-24T22:52:41,636   copying src/pmx/data/mutff45/atommass.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-24T22:52:41,636   copying src/pmx/data/mutff45/elements.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-24T22:52:41,637   copying src/pmx/data/mutff45/spc216.gro -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-24T22:52:41,637   copying src/pmx/data/mutff45/specbond.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-24T22:52:41,638   copying src/pmx/data/mutff45/xlateat.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-24T22:52:41,638   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,639   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,640   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,641   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,643   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,646   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,648   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,672   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,674   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,676   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,679   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,682   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,686   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,688   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,690   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,693   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,740   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,761   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,763   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,765   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,767   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,770   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,772   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,774   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,776   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,778   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,780   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,782   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,784   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:41,786   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,788   copying src/pmx/data/mutff45/amber99sbmut.ff/Makefile.am -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,790   copying src/pmx/data/mutff45/amber99sbmut.ff/Makefile.in -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,792   copying src/pmx/data/mutff45/amber99sbmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,794   copying src/pmx/data/mutff45/amber99sbmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,797   copying src/pmx/data/mutff45/amber99sbmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,799   copying src/pmx/data/mutff45/amber99sbmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,801   copying src/pmx/data/mutff45/amber99sbmut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,803   copying src/pmx/data/mutff45/amber99sbmut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,805   copying src/pmx/data/mutff45/amber99sbmut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,807   copying src/pmx/data/mutff45/amber99sbmut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,810   copying src/pmx/data/mutff45/amber99sbmut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,812   copying src/pmx/data/mutff45/amber99sbmut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,814   copying src/pmx/data/mutff45/amber99sbmut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,816   copying src/pmx/data/mutff45/amber99sbmut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,818   copying src/pmx/data/mutff45/amber99sbmut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,821   copying src/pmx/data/mutff45/amber99sbmut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,823   copying src/pmx/data/mutff45/amber99sbmut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,825   copying src/pmx/data/mutff45/amber99sbmut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,827   copying src/pmx/data/mutff45/amber99sbmut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,829   copying src/pmx/data/mutff45/amber99sbmut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,831   copying src/pmx/data/mutff45/amber99sbmut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,833   copying src/pmx/data/mutff45/amber99sbmut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,835   copying src/pmx/data/mutff45/amber99sbmut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:41,837   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,838   copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,839   copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,841   copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,843   copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,845   copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,848   copying src/pmx/data/mutff45/charmm22starmut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,850   copying src/pmx/data/mutff45/charmm22starmut.ff/dna.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,851   copying src/pmx/data/mutff45/charmm22starmut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,853   copying src/pmx/data/mutff45/charmm22starmut.ff/dna.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,855   copying src/pmx/data/mutff45/charmm22starmut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,857   copying src/pmx/data/mutff45/charmm22starmut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,861   copying src/pmx/data/mutff45/charmm22starmut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,865   copying src/pmx/data/mutff45/charmm22starmut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,867   copying src/pmx/data/mutff45/charmm22starmut.ff/gb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,869   copying src/pmx/data/mutff45/charmm22starmut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,871   copying src/pmx/data/mutff45/charmm22starmut.ff/lipids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,873   copying src/pmx/data/mutff45/charmm22starmut.ff/lipids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,876   copying src/pmx/data/mutff45/charmm22starmut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,878   copying src/pmx/data/mutff45/charmm22starmut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,880   copying src/pmx/data/mutff45/charmm22starmut.ff/rna.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,882   copying src/pmx/data/mutff45/charmm22starmut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,884   copying src/pmx/data/mutff45/charmm22starmut.ff/rna.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,886   copying src/pmx/data/mutff45/charmm22starmut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,888   copying src/pmx/data/mutff45/charmm22starmut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,891   copying src/pmx/data/mutff45/charmm22starmut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,893   copying src/pmx/data/mutff45/charmm22starmut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,895   copying src/pmx/data/mutff45/charmm22starmut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,897   copying src/pmx/data/mutff45/charmm22starmut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,898   copying src/pmx/data/mutff45/charmm22starmut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,900   copying src/pmx/data/mutff45/charmm22starmut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,902   copying src/pmx/data/mutff45/charmm22starmut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:41,904   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-24T22:52:41,905   copying src/pmx/data/mutff45/charmm36mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-24T22:52:41,907   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna
2023-09-24T22:52:41,908   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,909   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,912   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,914   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,916   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,919   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,921   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,923   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,927   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,930   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,932   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,935   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,965   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,968   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,970   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,972   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,975   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,978   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,980   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,983   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,986   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,988   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,990   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:41,992   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:42,045   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:42,072   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:42,081   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:42,090   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:42,100   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:42,109   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:42,111   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:42,113   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:42,115   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:42,118   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:42,120   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:42,122   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:42,124   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:42,126   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:42,128   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:42,130   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:42,131   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:42,134   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,135   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,137   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,139   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,142   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,143   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,145   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,149   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,151   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,154   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,157   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,160   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,161   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,163   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,165   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,168   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,170   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,173   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,174   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,176   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,178   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,185   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,192   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,195   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,198   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,201   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,203   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,206   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,209   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,211   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,214   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,216   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,219   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,221   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,223   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,226   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:42,228   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,229   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,235   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,237   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,240   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,242   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,244   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,247   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,249   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,252   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,254   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,285   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,287   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,294   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,299   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/nbfix.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,301   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,303   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,305   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,307   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,309   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:42,311   creating build/lib.linux-armv7l-cpython-311/pmx/extensions
2023-09-24T22:52:42,312   creating build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-24T22:52:42,313   copying src/pmx/extensions/pmx/Energy.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-24T22:52:42,315   copying src/pmx/extensions/pmx/Geometry.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-24T22:52:42,318   copying src/pmx/extensions/pmx/Geometry.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-24T22:52:42,321   copying src/pmx/extensions/pmx/cpp_test.cpp -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-24T22:52:42,323   copying src/pmx/extensions/pmx/init.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-24T22:52:42,325   copying src/pmx/extensions/pmx/pmx.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-24T22:52:42,327   copying src/pmx/extensions/pmx/wrap_Geometry.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-24T22:52:42,330   creating build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-24T22:52:42,331   copying src/pmx/extensions/xdr/trr2xtc.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-24T22:52:42,333   copying src/pmx/extensions/xdr/xdrfile.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-24T22:52:42,337   copying src/pmx/extensions/xdr/xdrfile.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-24T22:52:42,339   copying src/pmx/extensions/xdr/xdrfile_c_test.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-24T22:52:42,342   copying src/pmx/extensions/xdr/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-24T22:52:42,344   copying src/pmx/extensions/xdr/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-24T22:52:42,346   copying src/pmx/extensions/xdr/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-24T22:52:42,348   copying src/pmx/extensions/xdr/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-24T22:52:42,350   creating build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-24T22:52:42,351   copying src/pmx/scripts/md_setup.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-24T22:52:42,354   creating build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands
2023-09-24T22:52:42,355   copying src/pmx/scripts/ligands/atoms_to_morph.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands
2023-09-24T22:52:42,358   copying src/pmx/scripts/ligands/atoms_to_morph_rdkit2018.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands
2023-09-24T22:52:42,362   copying src/pmx/scripts/ligands/build_mst_graph.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands
2023-09-24T22:52:42,364   copying src/pmx/scripts/ligands/make_hybrid.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands
2023-09-24T22:52:42,368   copying src/pmx/scripts/ligands/one_ff_file.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands
2023-09-24T22:52:42,370   UPDATING build/lib.linux-armv7l-cpython-311/pmx/_version.py
2023-09-24T22:52:42,371   set build/lib.linux-armv7l-cpython-311/pmx/_version.py to '4.0.0'
2023-09-24T22:52:42,372   running build_ext
2023-09-24T22:52:42,908   building 'pmx._pmx' extension
2023-09-24T22:52:42,909   creating build/temp.linux-armv7l-cpython-311
2023-09-24T22:52:42,909   creating build/temp.linux-armv7l-cpython-311/src
2023-09-24T22:52:42,910   creating build/temp.linux-armv7l-cpython-311/src/pmx
2023-09-24T22:52:42,911   creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions
2023-09-24T22:52:42,911   creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx
2023-09-24T22:52:42,913   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/Energy.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Energy.o
2023-09-24T22:52:44,074   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/Geometry.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Geometry.o
2023-09-24T22:52:44,659   src/pmx/extensions/pmx/Geometry.c: In function ‘spread_atoms_on_grid’:
2023-09-24T22:52:44,660   src/pmx/extensions/pmx/Geometry.c:527:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable]
2023-09-24T22:52:44,660     527 |   int nx, ny, nz;
2023-09-24T22:52:44,661         |               ^~
2023-09-24T22:52:44,661   src/pmx/extensions/pmx/Geometry.c: In function ‘search_neighbors’:
2023-09-24T22:52:44,662   src/pmx/extensions/pmx/Geometry.c:586:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable]
2023-09-24T22:52:44,663     586 |   int nx, ny, nz;
2023-09-24T22:52:44,665         |               ^~
2023-09-24T22:52:46,535   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/init.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/init.o
2023-09-24T22:52:46,935   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/wrap_Geometry.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/wrap_Geometry.o
2023-09-24T22:52:48,534   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Energy.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Geometry.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/init.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/wrap_Geometry.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/pmx/_pmx.cpython-311-arm-linux-gnueabihf.so
2023-09-24T22:52:48,661   building 'pmx._xdrio' extension
2023-09-24T22:52:48,662   creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr
2023-09-24T22:52:48,662   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.11 -c src/pmx/extensions/xdr/xdrfile.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile.o
2023-09-24T22:52:48,705   src/pmx/extensions/xdr/xdrfile.c:5:2: warning: "/*" within comment [-Wcomment]
2023-09-24T22:52:48,706       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-24T22:52:48,706         |
2023-09-24T22:52:48,797   In file included from src/pmx/extensions/xdr/xdrfile.c:60:
2023-09-24T22:52:48,797   src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-24T22:52:48,798       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-24T22:52:48,798         |
2023-09-24T22:52:48,807   src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofint’:
2023-09-24T22:52:48,808   src/pmx/extensions/xdr/xdrfile.c:499:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-24T22:52:48,808     499 |     while (size >= num && num_of_bits < 32)
2023-09-24T22:52:48,809         |                 ^~
2023-09-24T22:52:48,810   src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofints’:
2023-09-24T22:52:48,811   src/pmx/extensions/xdr/xdrfile.c:545:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T22:52:48,811     545 |     while (bytes[num_of_bytes] >= num)
2023-09-24T22:52:48,812         |                                ^~
2023-09-24T22:52:48,814   src/pmx/extensions/xdr/xdrfile.c: In function ‘encodeints’:
2023-09-24T22:52:48,815   src/pmx/extensions/xdr/xdrfile.c:654:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-24T22:52:48,815     654 |     if (num_of_bits >= num_of_bytes * 8)
2023-09-24T22:52:48,816         |                     ^~
2023-09-24T22:52:48,816   src/pmx/extensions/xdr/xdrfile.c:656:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-24T22:52:48,817     656 |                 for (i = 0; i < num_of_bytes; i++)
2023-09-24T22:52:48,817         |                               ^
2023-09-24T22:52:48,818   src/pmx/extensions/xdr/xdrfile.c:664:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-24T22:52:48,819     664 |                 for (i = 0; i < num_of_bytes-1; i++)
2023-09-24T22:52:48,819         |                               ^
2023-09-24T22:52:48,820   src/pmx/extensions/xdr/xdrfile.c: In function ‘decodebits’:
2023-09-24T22:52:48,821   src/pmx/extensions/xdr/xdrfile.c:704:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T22:52:48,822     704 |                 if (lastbits < num_of_bits)
2023-09-24T22:52:48,822         |                              ^
2023-09-24T22:52:48,825   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_float’:
2023-09-24T22:52:48,826   src/pmx/extensions/xdr/xdrfile.c:814:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T22:52:48,827     814 |         if(size3>xfp->buf1size)
2023-09-24T22:52:48,827         |                 ^
2023-09-24T22:52:48,830   src/pmx/extensions/xdr/xdrfile.c:866:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T22:52:48,830     866 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-24T22:52:48,831         |                          ^
2023-09-24T22:52:48,832   src/pmx/extensions/xdr/xdrfile.c:866:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-24T22:52:48,832     866 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-24T22:52:48,833         |                                            ^~~
2023-09-24T22:52:48,836   src/pmx/extensions/xdr/xdrfile.c:792:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-09-24T22:52:48,837     792 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-09-24T22:52:48,837         |                                ^~~~~~
2023-09-24T22:52:48,838   src/pmx/extensions/xdr/xdrfile.c:789:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-09-24T22:52:48,839     789 |         int smallidx, minidx, maxidx;
2023-09-24T22:52:48,839         |                       ^~~~~~
2023-09-24T22:52:48,840   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2023-09-24T22:52:48,841   src/pmx/extensions/xdr/xdrfile.c:1010:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T22:52:48,842    1010 |         if(size3>xfp->buf1size)
2023-09-24T22:52:48,843         |                 ^
2023-09-24T22:52:48,849   src/pmx/extensions/xdr/xdrfile.c:1133:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-24T22:52:48,849    1133 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-09-24T22:52:48,850         |                         ^
2023-09-24T22:52:48,851   src/pmx/extensions/xdr/xdrfile.c:1139:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T22:52:48,852    1139 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-24T22:52:48,852         |                          ^
2023-09-24T22:52:48,853   src/pmx/extensions/xdr/xdrfile.c:1139:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-24T22:52:48,854    1139 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-24T22:52:48,854         |                                            ^~~
2023-09-24T22:52:48,859   src/pmx/extensions/xdr/xdrfile.c:1271:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-24T22:52:48,860    1271 |         if(tmp==(unsigned int)buf2[0])
2023-09-24T22:52:48,860         |               ^~
2023-09-24T22:52:48,861   src/pmx/extensions/xdr/xdrfile.c:999:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-09-24T22:52:48,862     999 |         int errval=1;
2023-09-24T22:52:48,862         |             ^~~~~~
2023-09-24T22:52:48,864   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_double’:
2023-09-24T22:52:48,866   src/pmx/extensions/xdr/xdrfile.c:1311:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T22:52:48,866    1311 |         if(size3>xfp->buf1size)
2023-09-24T22:52:48,867         |                 ^
2023-09-24T22:52:48,870   src/pmx/extensions/xdr/xdrfile.c:1366:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T22:52:48,870    1366 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-24T22:52:48,871         |                          ^
2023-09-24T22:52:48,872   src/pmx/extensions/xdr/xdrfile.c:1366:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-24T22:52:48,873    1366 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-24T22:52:48,873         |                                            ^~~
2023-09-24T22:52:48,877   src/pmx/extensions/xdr/xdrfile.c:1288:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-09-24T22:52:48,878    1288 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-09-24T22:52:48,878         |                                ^~~~~~
2023-09-24T22:52:48,880   src/pmx/extensions/xdr/xdrfile.c:1285:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-09-24T22:52:48,880    1285 |         int smallidx, minidx, maxidx;
2023-09-24T22:52:48,881         |                       ^~~~~~
2023-09-24T22:52:48,882   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2023-09-24T22:52:48,884   src/pmx/extensions/xdr/xdrfile.c:1502:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T22:52:48,884    1502 |         if(size3>xfp->buf1size) {
2023-09-24T22:52:48,885         |                 ^
2023-09-24T22:52:48,894   src/pmx/extensions/xdr/xdrfile.c:1617:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-24T22:52:48,895    1617 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-09-24T22:52:48,896         |                         ^
2023-09-24T22:52:48,898   src/pmx/extensions/xdr/xdrfile.c:1622:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T22:52:48,898    1622 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-24T22:52:48,899         |                          ^
2023-09-24T22:52:48,900   src/pmx/extensions/xdr/xdrfile.c:1622:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-24T22:52:48,901    1622 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-24T22:52:48,902         |                                            ^~~
2023-09-24T22:52:48,907   src/pmx/extensions/xdr/xdrfile.c:1732:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-24T22:52:48,907    1732 |         if(tmp==(unsigned int)buf2[0])
2023-09-24T22:52:48,908         |               ^~
2023-09-24T22:52:48,909   src/pmx/extensions/xdr/xdrfile.c:1492:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-09-24T22:52:48,910    1492 |         int errval=1;
2023-09-24T22:52:48,910         |             ^~~~~~
2023-09-24T22:52:51,492   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.11 -c src/pmx/extensions/xdr/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_trr.o
2023-09-24T22:52:51,533   src/pmx/extensions/xdr/xdrfile_trr.c:5:2: warning: "/*" within comment [-Wcomment]
2023-09-24T22:52:51,534       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-24T22:52:51,534         |
2023-09-24T22:52:51,574   In file included from src/pmx/extensions/xdr/xdrfile_trr.c:41:
2023-09-24T22:52:51,574   src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-24T22:52:51,575       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-24T22:52:51,575         |
2023-09-24T22:52:51,577   In file included from src/pmx/extensions/xdr/xdrfile_trr.c:42:
2023-09-24T22:52:51,577   src/pmx/extensions/xdr/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-24T22:52:51,578       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-24T22:52:51,578         |
2023-09-24T22:52:51,580   src/pmx/extensions/xdr/xdrfile_trr.c: In function ‘do_trnheader’:
2023-09-24T22:52:51,581   src/pmx/extensions/xdr/xdrfile_trr.c:108:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-24T22:52:51,581     108 |         if (slen != strlen(version)+1)
2023-09-24T22:52:51,582         |                  ^~
2023-09-24T22:52:51,583   src/pmx/extensions/xdr/xdrfile_trr.c:118:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-24T22:52:51,583     118 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2023-09-24T22:52:51,584         |                                              ^~
2023-09-24T22:52:52,257   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.11 -c src/pmx/extensions/xdr/xdrfile_xtc.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_xtc.o
2023-09-24T22:52:52,329   In file included from src/pmx/extensions/xdr/xdrfile_xtc.c:31:
2023-09-24T22:52:52,329   src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-24T22:52:52,330       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-24T22:52:52,331         |
2023-09-24T22:52:52,331   In file included from src/pmx/extensions/xdr/xdrfile_xtc.c:32:
2023-09-24T22:52:52,332   src/pmx/extensions/xdr/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-24T22:52:52,332       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-24T22:52:52,333         |
2023-09-24T22:52:52,334   src/pmx/extensions/xdr/xdrfile_xtc.c: In function ‘xtc_coord’:
2023-09-24T22:52:52,334   src/pmx/extensions/xdr/xdrfile_xtc.c:66:15: warning: unused variable ‘j’ [-Wunused-variable]
2023-09-24T22:52:52,335      66 |         int i,j,result;
2023-09-24T22:52:52,336         |               ^
2023-09-24T22:52:52,337   src/pmx/extensions/xdr/xdrfile_xtc.c:66:13: warning: unused variable ‘i’ [-Wunused-variable]
2023-09-24T22:52:52,337      66 |         int i,j,result;
2023-09-24T22:52:52,338         |             ^
2023-09-24T22:52:52,450   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_trr.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_xtc.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so
2023-09-24T22:52:52,579   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-24T22:52:52,580   !!

2023-09-24T22:52:52,581           ********************************************************************************
2023-09-24T22:52:52,582           Please avoid running ``setup.py`` directly.
2023-09-24T22:52:52,583           Instead, use pypa/build, pypa/installer or other
2023-09-24T22:52:52,584           standards-based tools.

2023-09-24T22:52:52,585           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-24T22:52:52,585           ********************************************************************************

2023-09-24T22:52:52,586   !!
2023-09-24T22:52:52,586     self.initialize_options()
2023-09-24T22:52:52,604   installing to build/bdist.linux-armv7l/wheel
2023-09-24T22:52:52,605   running install
2023-09-24T22:52:52,629   running install_lib
2023-09-24T22:52:52,655   creating build/bdist.linux-armv7l
2023-09-24T22:52:52,655   creating build/bdist.linux-armv7l/wheel
2023-09-24T22:52:52,656   creating build/bdist.linux-armv7l/wheel/pmx
2023-09-24T22:52:52,658   creating build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-24T22:52:52,659   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/md_setup.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-24T22:52:52,662   creating build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2023-09-24T22:52:52,662   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands/build_mst_graph.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2023-09-24T22:52:52,665   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands/atoms_to_morph_rdkit2018.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2023-09-24T22:52:52,668   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands/one_ff_file.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2023-09-24T22:52:52,670   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands/make_hybrid.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2023-09-24T22:52:52,673   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands/atoms_to_morph.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2023-09-24T22:52:52,676   copying build/lib.linux-armv7l-cpython-311/pmx/_pmx.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx
2023-09-24T22:52:52,682   copying build/lib.linux-armv7l-cpython-311/pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx
2023-09-24T22:52:52,686   copying build/lib.linux-armv7l-cpython-311/pmx/_version.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-24T22:52:52,689   creating build/bdist.linux-armv7l/wheel/pmx/extensions
2023-09-24T22:52:52,690   creating build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-24T22:52:52,691   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/trr2xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-24T22:52:52,693   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-24T22:52:52,695   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-24T22:52:52,697   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-24T22:52:52,699   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_c_test.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-24T22:52:52,701   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-24T22:52:52,704   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-24T22:52:52,707   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-24T22:52:52,710   creating build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-24T22:52:52,711   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/pmx.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-24T22:52:52,713   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-24T22:52:52,716   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/wrap_Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-24T22:52:52,719   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/cpp_test.cpp -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-24T22:52:52,720   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Energy.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-24T22:52:52,723   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/init.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-24T22:52:52,724   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Geometry.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-24T22:52:52,727   creating build/bdist.linux-armv7l/wheel/pmx/data
2023-09-24T22:52:52,728   copying build/lib.linux-armv7l-cpython-311/pmx/data/bbdep.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-24T22:52:52,996   copying build/lib.linux-armv7l-cpython-311/pmx/data/blosum62_new.mat -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-24T22:52:52,999   copying build/lib.linux-armv7l-cpython-311/pmx/data/bp.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-24T22:52:53,003   copying build/lib.linux-armv7l-cpython-311/pmx/data/bp_charmm.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-24T22:52:53,008   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-24T22:52:53,009   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/xlateat.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-24T22:52:53,011   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/elements.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-24T22:52:53,013   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,014   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,016   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,018   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,020   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,021   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,023   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,025   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,027   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,030   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,032   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,051   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,053   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,056   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,058   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,060   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,062   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,108   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,110   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,112   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,114   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,116   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,118   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,139   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,142   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,144   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,145   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,147   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,149   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,152   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,153   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,155   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,157   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/rna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,159   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/dna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,161   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,162   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,164   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,166   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,168   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,169   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,171   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,173   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,174   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/rna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,176   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,178   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,180   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,182   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,184   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,186   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,188   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/lipids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,191   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/lipids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,193   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,195   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,197   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/ffnanonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,200   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,203   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/dna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,205   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,207   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,208   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,210   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,212   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T22:52:53,214   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/atommass.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-24T22:52:53,216   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-24T22:52:53,217   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-24T22:52:53,220   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,221   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,222   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,225   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/Makefile.in -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,227   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,229   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,231   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,233   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,235   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,237   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,239   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,241   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,243   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,246   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,248   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,252   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,257   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,259   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,261   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,262   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,264   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,266   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,268   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,269   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/Makefile.am -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T22:52:53,271   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/specbond.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-24T22:52:53,273   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/spc216.gro -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-24T22:52:53,275   copying build/lib.linux-armv7l-cpython-311/pmx/data/rna.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-24T22:52:53,279   copying build/lib.linux-armv7l-cpython-311/pmx/data/bp_amber.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-24T22:52:53,284   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna
2023-09-24T22:52:53,286   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,287   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,289   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,291   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,293   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,295   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,297   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,299   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,303   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,306   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,309   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,310   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,312   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,334   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,335   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,338   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,340   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,342   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,345   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,347   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,349   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,397   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,405   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,408   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,410   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,412   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,416   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,418   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,420   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,422   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,424   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,449   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,452   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,454   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,455   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,458   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,459   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,462   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,464   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,466   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,467   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T22:52:53,470   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,471   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,473   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,475   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,477   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,481   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,483   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,485   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,487   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,489   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,508   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,510   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,512   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,513   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,515   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,524   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,526   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,531   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/nbfix.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,533   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,535   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T22:52:53,538   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,539   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,541   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,543   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,545   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,547   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,549   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,551   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,556   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,559   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,560   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,562   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,564   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,566   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,569   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,571   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,574   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,576   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,578   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,580   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,588   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,591   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,593   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,595   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,601   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,603   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,605   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,607   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,609   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,611   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,614   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,615   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,618   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,620   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,622   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,624   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T22:52:53,625   running install_egg_info
2023-09-24T22:52:53,653   Copying src/pmx_biobb.egg-info to build/bdist.linux-armv7l/wheel/pmx_biobb-4.0.0-py3.11.egg-info
2023-09-24T22:52:53,668   running install_scripts
2023-09-24T22:52:53,700   adding license file "LICENSE" (matched pattern "LICENSE")
2023-09-24T22:52:53,723   creating build/bdist.linux-armv7l/wheel/pmx_biobb-4.0.0.dist-info/WHEEL
2023-09-24T22:52:53,725   creating '/tmp/pip-wheel-vo80ehfj/pmx_biobb-4.0.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-24T22:52:53,762   adding 'pmx/_pmx.cpython-311-arm-linux-gnueabihf.so'
2023-09-24T22:52:53,765   adding 'pmx/_version.py'
2023-09-24T22:52:53,786   adding 'pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so'
2023-09-24T22:52:55,588   adding 'pmx/data/bbdep.pkl'
2023-09-24T22:52:55,730   adding 'pmx/data/blosum62_new.mat'
2023-09-24T22:52:55,745   adding 'pmx/data/bp.pkl'
2023-09-24T22:52:55,766   adding 'pmx/data/bp_amber.pkl'
2023-09-24T22:52:55,787   adding 'pmx/data/bp_charmm.pkl'
2023-09-24T22:52:55,796   adding 'pmx/data/rna.pkl'
2023-09-24T22:52:55,799   adding 'pmx/data/mutff45/atommass.dat'
2023-09-24T22:52:55,800   adding 'pmx/data/mutff45/elements.dat'
2023-09-24T22:52:55,807   adding 'pmx/data/mutff45/spc216.gro'
2023-09-24T22:52:55,808   adding 'pmx/data/mutff45/specbond.dat'
2023-09-24T22:52:55,810   adding 'pmx/data/mutff45/xlateat.dat'
2023-09-24T22:52:55,812   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb'
2023-09-24T22:52:55,813   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.hdb'
2023-09-24T22:52:55,814   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb'
2023-09-24T22:52:55,816   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.r2b'
2023-09-24T22:52:55,817   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.vsd'
2023-09-24T22:52:55,879   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/backup_mutres'
2023-09-24T22:52:55,890   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.arn'
2023-09-24T22:52:55,891   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.hdb'
2023-09-24T22:52:55,892   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.r2b'
2023-09-24T22:52:55,895   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.rtp'
2023-09-24T22:52:55,899   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffbonded.itp'
2023-09-24T22:52:55,901   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.itp'
2023-09-24T22:52:55,902   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/gbsa.itp'
2023-09-24T22:52:55,903   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ions.itp'
2023-09-24T22:52:56,058   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.mtp'
2023-09-24T22:52:56,141   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.rtp'
2023-09-24T22:52:56,151   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.arn'
2023-09-24T22:52:56,153   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.hdb'
2023-09-24T22:52:56,154   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.r2b'
2023-09-24T22:52:56,156   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.rtp'
2023-09-24T22:52:56,158   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spc.itp'
2023-09-24T22:52:56,159   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spce.itp'
2023-09-24T22:52:56,160   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip3p.itp'
2023-09-24T22:52:56,161   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4p.itp'
2023-09-24T22:52:56,163   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4pew.itp'
2023-09-24T22:52:56,164   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip5p.itp'
2023-09-24T22:52:56,165   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/urea.itp'
2023-09-24T22:52:56,166   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/watermodels.dat'
2023-09-24T22:52:56,168   adding 'pmx/data/mutff45/amber99sbmut.ff/Makefile.am'
2023-09-24T22:52:56,170   adding 'pmx/data/mutff45/amber99sbmut.ff/Makefile.in'
2023-09-24T22:52:56,171   adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.c.tdb'
2023-09-24T22:52:56,173   adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.hdb'
2023-09-24T22:52:56,174   adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.n.tdb'
2023-09-24T22:52:56,176   adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.vsd'
2023-09-24T22:52:56,177   adding 'pmx/data/mutff45/amber99sbmut.ff/dna.arn'
2023-09-24T22:52:56,178   adding 'pmx/data/mutff45/amber99sbmut.ff/dna.hdb'
2023-09-24T22:52:56,179   adding 'pmx/data/mutff45/amber99sbmut.ff/dna.r2b'
2023-09-24T22:52:56,182   adding 'pmx/data/mutff45/amber99sbmut.ff/dna.rtp'
2023-09-24T22:52:56,184   adding 'pmx/data/mutff45/amber99sbmut.ff/gbsa.itp'
2023-09-24T22:52:56,185   adding 'pmx/data/mutff45/amber99sbmut.ff/rna.arn'
2023-09-24T22:52:56,186   adding 'pmx/data/mutff45/amber99sbmut.ff/rna.hdb'
2023-09-24T22:52:56,187   adding 'pmx/data/mutff45/amber99sbmut.ff/rna.r2b'
2023-09-24T22:52:56,189   adding 'pmx/data/mutff45/amber99sbmut.ff/rna.rtp'
2023-09-24T22:52:56,191   adding 'pmx/data/mutff45/amber99sbmut.ff/spc.itp'
2023-09-24T22:52:56,192   adding 'pmx/data/mutff45/amber99sbmut.ff/spce.itp'
2023-09-24T22:52:56,193   adding 'pmx/data/mutff45/amber99sbmut.ff/tip3p.itp'
2023-09-24T22:52:56,195   adding 'pmx/data/mutff45/amber99sbmut.ff/tip4p.itp'
2023-09-24T22:52:56,196   adding 'pmx/data/mutff45/amber99sbmut.ff/tip4pew.itp'
2023-09-24T22:52:56,197   adding 'pmx/data/mutff45/amber99sbmut.ff/tip5p.itp'
2023-09-24T22:52:56,198   adding 'pmx/data/mutff45/amber99sbmut.ff/urea.itp'
2023-09-24T22:52:56,200   adding 'pmx/data/mutff45/amber99sbmut.ff/watermodels.dat'
2023-09-24T22:52:56,202   adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.arn'
2023-09-24T22:52:56,203   adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.c.tdb'
2023-09-24T22:52:56,204   adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.n.tdb'
2023-09-24T22:52:56,206   adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.r2b'
2023-09-24T22:52:56,207   adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.vsd'
2023-09-24T22:52:56,208   adding 'pmx/data/mutff45/charmm22starmut.ff/dna.arn'
2023-09-24T22:52:56,209   adding 'pmx/data/mutff45/charmm22starmut.ff/dna.c.tdb'
2023-09-24T22:52:56,211   adding 'pmx/data/mutff45/charmm22starmut.ff/dna.hdb'
2023-09-24T22:52:56,212   adding 'pmx/data/mutff45/charmm22starmut.ff/dna.n.tdb'
2023-09-24T22:52:56,214   adding 'pmx/data/mutff45/charmm22starmut.ff/dna.rtp'
2023-09-24T22:52:56,221   adding 'pmx/data/mutff45/charmm22starmut.ff/ffbonded.itp'
2023-09-24T22:52:56,226   adding 'pmx/data/mutff45/charmm22starmut.ff/ffnanonbonded.itp'
2023-09-24T22:52:56,227   adding 'pmx/data/mutff45/charmm22starmut.ff/forcefield.itp'
2023-09-24T22:52:56,229   adding 'pmx/data/mutff45/charmm22starmut.ff/gb.itp'
2023-09-24T22:52:56,230   adding 'pmx/data/mutff45/charmm22starmut.ff/ions.itp'
2023-09-24T22:52:56,231   adding 'pmx/data/mutff45/charmm22starmut.ff/lipids.hdb'
2023-09-24T22:52:56,236   adding 'pmx/data/mutff45/charmm22starmut.ff/lipids.rtp'
2023-09-24T22:52:56,237   adding 'pmx/data/mutff45/charmm22starmut.ff/mutres.arn'
2023-09-24T22:52:56,238   adding 'pmx/data/mutff45/charmm22starmut.ff/rna.arn'
2023-09-24T22:52:56,239   adding 'pmx/data/mutff45/charmm22starmut.ff/rna.c.tdb'
2023-09-24T22:52:56,241   adding 'pmx/data/mutff45/charmm22starmut.ff/rna.hdb'
2023-09-24T22:52:56,242   adding 'pmx/data/mutff45/charmm22starmut.ff/rna.n.tdb'
2023-09-24T22:52:56,243   adding 'pmx/data/mutff45/charmm22starmut.ff/rna.r2b'
2023-09-24T22:52:56,245   adding 'pmx/data/mutff45/charmm22starmut.ff/rna.rtp'
2023-09-24T22:52:56,246   adding 'pmx/data/mutff45/charmm22starmut.ff/spc.itp'
2023-09-24T22:52:56,248   adding 'pmx/data/mutff45/charmm22starmut.ff/spce.itp'
2023-09-24T22:52:56,249   adding 'pmx/data/mutff45/charmm22starmut.ff/tip3p.itp'
2023-09-24T22:52:56,250   adding 'pmx/data/mutff45/charmm22starmut.ff/tip4p.itp'
2023-09-24T22:52:56,251   adding 'pmx/data/mutff45/charmm22starmut.ff/tip4pew.itp'
2023-09-24T22:52:56,253   adding 'pmx/data/mutff45/charmm22starmut.ff/tip5p.itp'
2023-09-24T22:52:56,254   adding 'pmx/data/mutff45/charmm22starmut.ff/watermodels.dat'
2023-09-24T22:52:56,256   adding 'pmx/data/mutff45/charmm36mut.ff/aminoacids.arn'
2023-09-24T22:52:56,260   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn'
2023-09-24T22:52:56,261   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup'
2023-09-24T22:52:56,262   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb'
2023-09-24T22:52:56,264   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb'
2023-09-24T22:52:56,265   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb'
2023-09-24T22:52:56,266   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b'
2023-09-24T22:52:56,274   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp'
2023-09-24T22:52:56,277   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd'
2023-09-24T22:52:56,279   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp'
2023-09-24T22:52:56,283   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp'
2023-09-24T22:52:56,344   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres'
2023-09-24T22:52:56,358   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp'
2023-09-24T22:52:56,359   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.arn'
2023-09-24T22:52:56,361   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb'
2023-09-24T22:52:56,362   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b'
2023-09-24T22:52:56,365   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp'
2023-09-24T22:52:56,367   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp'
2023-09-24T22:52:56,372   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp'
2023-09-24T22:52:56,374   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp'
2023-09-24T22:52:56,375   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp'
2023-09-24T22:52:56,377   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp'
2023-09-24T22:52:56,378   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ions.itp'
2023-09-24T22:52:56,533   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp'
2023-09-24T22:52:56,615   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp'
2023-09-24T22:52:56,643   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp'
2023-09-24T22:52:56,653   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp'
2023-09-24T22:52:56,656   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp'
2023-09-24T22:52:56,659   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp'
2023-09-24T22:52:56,660   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.arn'
2023-09-24T22:52:56,661   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb'
2023-09-24T22:52:56,662   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b'
2023-09-24T22:52:56,665   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp'
2023-09-24T22:52:56,666   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spc.itp'
2023-09-24T22:52:56,667   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spce.itp'
2023-09-24T22:52:56,668   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp'
2023-09-24T22:52:56,670   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp'
2023-09-24T22:52:56,671   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp'
2023-09-24T22:52:56,672   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp'
2023-09-24T22:52:56,673   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/urea.itp'
2023-09-24T22:52:56,674   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat'
2023-09-24T22:52:56,677   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.arn'
2023-09-24T22:52:56,678   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb'
2023-09-24T22:52:56,679   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.hdb'
2023-09-24T22:52:56,680   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb'
2023-09-24T22:52:56,682   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.r2b'
2023-09-24T22:52:56,690   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.rtp'
2023-09-24T22:52:56,692   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.vsd'
2023-09-24T22:52:56,694   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/atomtypes.atp'
2023-09-24T22:52:56,698   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_ffbonded_for_ildn_test.itp'
2023-09-24T22:52:56,702   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/correct_ffbonded.itp'
2023-09-24T22:52:56,703   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.arn'
2023-09-24T22:52:56,704   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.hdb'
2023-09-24T22:52:56,706   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.r2b'
2023-09-24T22:52:56,708   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.rtp'
2023-09-24T22:52:56,710   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffberger.itp'
2023-09-24T22:52:56,712   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffnonbonded.itp'
2023-09-24T22:52:56,713   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.itp'
2023-09-24T22:52:56,714   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/gbsa.itp'
2023-09-24T22:52:56,716   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ions.itp'
2023-09-24T22:52:56,734   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.mtp'
2023-09-24T22:52:56,744   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.rtp'
2023-09-24T22:52:56,748   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer.itp'
2023-09-24T22:52:56,750   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer_posre.itp'
2023-09-24T22:52:56,752   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.arn'
2023-09-24T22:52:56,753   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.hdb'
2023-09-24T22:52:56,754   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.r2b'
2023-09-24T22:52:56,756   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.rtp'
2023-09-24T22:52:56,758   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spc.itp'
2023-09-24T22:52:56,759   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spce.itp'
2023-09-24T22:52:56,761   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip3p.itp'
2023-09-24T22:52:56,762   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4p.itp'
2023-09-24T22:52:56,763   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4pew.itp'
2023-09-24T22:52:56,764   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip5p.itp'
2023-09-24T22:52:56,766   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/urea.itp'
2023-09-24T22:52:56,767   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/watermodels.dat'
2023-09-24T22:52:56,780   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/cmap.itp'
2023-09-24T22:52:56,782   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.itp'
2023-09-24T22:52:56,784   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/gb.itp'
2023-09-24T22:52:56,785   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/ions.itp'
2023-09-24T22:52:56,786   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.arn'
2023-09-24T22:52:56,787   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.c.tdb'
2023-09-24T22:52:56,789   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.hdb'
2023-09-24T22:52:56,791   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.n.tdb'
2023-09-24T22:52:56,792   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.r2b'
2023-09-24T22:52:56,928   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.rtp'
2023-09-24T22:52:56,939   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.vsd'
2023-09-24T22:52:56,956   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.mtp'
2023-09-24T22:52:56,966   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.rtp'
2023-09-24T22:52:56,969   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/nbfix.itp'
2023-09-24T22:52:56,970   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/spc.itp'
2023-09-24T22:52:56,971   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/spce.itp'
2023-09-24T22:52:56,972   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/tip3p.itp'
2023-09-24T22:52:56,974   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/tip4p.itp'
2023-09-24T22:52:56,975   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/watermodels.dat'
2023-09-24T22:52:56,978   adding 'pmx/extensions/pmx/Energy.c'
2023-09-24T22:52:56,981   adding 'pmx/extensions/pmx/Geometry.c'
2023-09-24T22:52:56,984   adding 'pmx/extensions/pmx/Geometry.h'
2023-09-24T22:52:56,985   adding 'pmx/extensions/pmx/cpp_test.cpp'
2023-09-24T22:52:56,987   adding 'pmx/extensions/pmx/init.c'
2023-09-24T22:52:56,988   adding 'pmx/extensions/pmx/pmx.h'
2023-09-24T22:52:56,990   adding 'pmx/extensions/pmx/wrap_Geometry.c'
2023-09-24T22:52:56,993   adding 'pmx/extensions/xdr/trr2xtc.c'
2023-09-24T22:52:57,000   adding 'pmx/extensions/xdr/xdrfile.c'
2023-09-24T22:52:57,003   adding 'pmx/extensions/xdr/xdrfile.h'
2023-09-24T22:52:57,005   adding 'pmx/extensions/xdr/xdrfile_c_test.c'
2023-09-24T22:52:57,007   adding 'pmx/extensions/xdr/xdrfile_trr.c'
2023-09-24T22:52:57,009   adding 'pmx/extensions/xdr/xdrfile_trr.h'
2023-09-24T22:52:57,010   adding 'pmx/extensions/xdr/xdrfile_xtc.c'
2023-09-24T22:52:57,012   adding 'pmx/extensions/xdr/xdrfile_xtc.h'
2023-09-24T22:52:57,015   adding 'pmx/scripts/md_setup.py'
2023-09-24T22:52:57,024   adding 'pmx/scripts/ligands/atoms_to_morph.py'
2023-09-24T22:52:57,034   adding 'pmx/scripts/ligands/atoms_to_morph_rdkit2018.py'
2023-09-24T22:52:57,038   adding 'pmx/scripts/ligands/build_mst_graph.py'
2023-09-24T22:52:57,044   adding 'pmx/scripts/ligands/make_hybrid.py'
2023-09-24T22:52:57,046   adding 'pmx/scripts/ligands/one_ff_file.py'
2023-09-24T22:52:57,049   adding 'pmx_biobb-4.0.0.dist-info/LICENSE'
2023-09-24T22:52:57,051   adding 'pmx_biobb-4.0.0.dist-info/METADATA'
2023-09-24T22:52:57,052   adding 'pmx_biobb-4.0.0.dist-info/WHEEL'
2023-09-24T22:52:57,053   adding 'pmx_biobb-4.0.0.dist-info/entry_points.txt'
2023-09-24T22:52:57,055   adding 'pmx_biobb-4.0.0.dist-info/top_level.txt'
2023-09-24T22:52:57,059   adding 'pmx_biobb-4.0.0.dist-info/RECORD'
2023-09-24T22:52:57,113   removing build/bdist.linux-armv7l/wheel
2023-09-24T22:52:57,324   Building wheel for pmx-biobb (setup.py): finished with status 'done'
2023-09-24T22:52:57,377   Created wheel for pmx-biobb: filename=pmx_biobb-4.0.0-cp311-cp311-linux_armv7l.whl size=4258426 sha256=bef6e7259c029c9892522e445c7f1205d39811f71f9a90bf16770566dea86f31
2023-09-24T22:52:57,378   Stored in directory: /tmp/pip-ephem-wheel-cache-2uvzqzoi/wheels/0f/c3/fb/2aed39d2fa8f510f23894e089a77f34f5df68e75a5c5b243ee
2023-09-24T22:52:57,396 Successfully built pmx-biobb
2023-09-24T22:52:57,516 Removed build tracker: '/tmp/pip-build-tracker-sam1d2wy'