2023-09-24T23:17:05,663 Created temporary directory: /tmp/pip-build-tracker-27xs9jgf
2023-09-24T23:17:05,664 Initialized build tracking at /tmp/pip-build-tracker-27xs9jgf
2023-09-24T23:17:05,665 Created build tracker: /tmp/pip-build-tracker-27xs9jgf
2023-09-24T23:17:05,665 Entered build tracker: /tmp/pip-build-tracker-27xs9jgf
2023-09-24T23:17:05,666 Created temporary directory: /tmp/pip-wheel-rkfe8393
2023-09-24T23:17:05,669 Created temporary directory: /tmp/pip-ephem-wheel-cache-w4ikbzbg
2023-09-24T23:17:05,690 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-24T23:17:05,694 2 location(s) to search for versions of pmx-biobb:
2023-09-24T23:17:05,694 * https://pypi.org/simple/pmx-biobb/
2023-09-24T23:17:05,694 * https://www.piwheels.org/simple/pmx-biobb/
2023-09-24T23:17:05,695 Fetching project page and analyzing links: https://pypi.org/simple/pmx-biobb/
2023-09-24T23:17:05,695 Getting page https://pypi.org/simple/pmx-biobb/
2023-09-24T23:17:05,697 Found index url https://pypi.org/simple/
2023-09-24T23:17:05,919 Fetched page https://pypi.org/simple/pmx-biobb/ as application/vnd.pypi.simple.v1+json
2023-09-24T23:17:05,924   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/ea/0e/652070bd7d0ca56047ee9da48bdce6ad248973b822b5fe7d931c07a93625/pmx_biobb-1.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T23:17:05,925   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T23:17:05,926   Skipping link: 1.0.0 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T23:17:05,926   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/5b/2f2f6e34ed256b51485f1313f89aeb9647a2df056fad635dc6c69354a142/pmx_biobb-1.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T23:17:05,927   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T23:17:05,928   Skipping link: 1.0.1 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T23:17:05,928   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/dc/26/88efc470b39ed04650850696ca8d4c1777e1f1788960a41b063c4f9f64cc/pmx_biobb-2.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:05,929   Found link https://files.pythonhosted.org/packages/32/7c/dd656cd2d785a7b9815e0ca54fb9bec35c258cdc058d9450726e65bc201c/pmx_biobb-2.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 2.0.0
2023-09-24T23:17:05,930   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/73/a2/51564515b8b81b725a8aa81b962e040e66d59ce4637be894cf02315fc403/pmx_biobb-3.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:05,931   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/e7/93/4fac73a6fe156e0940953662d457f0424e847a9546db1c10a7bbad5d3642/pmx_biobb-3.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:05,932   Found link https://files.pythonhosted.org/packages/3c/b8/7dcc8b482f02b8ff26aa1a9819fd389f9cc01087954d968e156a073ea4ac/pmx_biobb-3.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.1
2023-09-24T23:17:05,933   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/c4/2a/c00053a2535945c6900b99621be5c40437e939c64f36ea7d14e3bb5febbe/pmx_biobb-3.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:05,934   Found link https://files.pythonhosted.org/packages/8a/0b/e7b469ecf2b337e713cafe136f826f79709c9940a4d3a1eb00a669657af0/pmx_biobb-3.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.2
2023-09-24T23:17:05,934   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/8a/70/3744fd3fd4d13d0fcd04c50740aa9584ba6c5b7eb43e1a4dd65a7c223cf2/pmx_biobb-3.0.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:05,935   Found link https://files.pythonhosted.org/packages/6f/b2/61607c93aa5d3c34838e44ed7df748137d3b266a06a32b6d521a19ddedb4/pmx_biobb-3.0.3.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.3
2023-09-24T23:17:05,936   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/34/3e/e0a91c21ec82ca2108ec1f20c6f9fb0feb3e83b1d9277b2b521b43e77067/pmx_biobb-4.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:05,937   Found link https://files.pythonhosted.org/packages/d3/ee/61a98e8a9a4a1d5ab8ea32a2712cc1dfb3d7326a8404fcbd3347b28fab4d/pmx_biobb-4.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.0
2023-09-24T23:17:05,937   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/cf/d3/2cac189bd5b21c71cb79a57bf2f38121a2ecc930294758e3565302de7d21/pmx_biobb-4.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:05,938   Found link https://files.pythonhosted.org/packages/b9/64/0a7b31944dfae299db2a1da0949f82c4843cbc8ee4abb2f2b3f716d38640/pmx_biobb-4.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.1
2023-09-24T23:17:05,939   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/6d/c32f57cf60dce3b6835df798488a8e6980ca6e2865723f9e1c9551a8bff3/pmx_biobb-4.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:05,940   Found link https://files.pythonhosted.org/packages/1e/f1/377ebcaabe3ae496f4e58c434464cc6899d7a1a6287abea0ac19c9a84f38/pmx_biobb-4.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.2
2023-09-24T23:17:05,940   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/21/d8/92f5da41c0ccee7807122989b44711b075159e3129707c40a469a5333825/pmx_biobb-4.1.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:05,941   Found link https://files.pythonhosted.org/packages/de/e6/7e0419f8305191fb52c09e3f36db33fa8e37e029e6e2d0c361cb384cfefa/pmx_biobb-4.1.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.1.2
2023-09-24T23:17:05,942   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/8f/b7/67894a846ff237417e009dd532d744eff5fd675e98ccb50e27fda4c145e1/pmx_biobb-4.1.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:05,943   Found link https://files.pythonhosted.org/packages/ff/3a/d6a0cec96cc00189a683995a26e729c9d09e503129b35192923c46bd93ed/pmx_biobb-4.1.3.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.1.3
2023-09-24T23:17:05,944 Fetching project page and analyzing links: https://www.piwheels.org/simple/pmx-biobb/
2023-09-24T23:17:05,944 Getting page https://www.piwheels.org/simple/pmx-biobb/
2023-09-24T23:17:05,946 Found index url https://www.piwheels.org/simple/
2023-09-24T23:17:06,106 Fetched page https://www.piwheels.org/simple/pmx-biobb/ as text/html
2023-09-24T23:17:06,119   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp39-cp39-linux_armv7l.whl#sha256=53bd7ffc22fe4dae9200c2f72b9650e77d4ab7809ecb0219685e7429222e7b43 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,120   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp39-cp39-linux_armv6l.whl#sha256=53bd7ffc22fe4dae9200c2f72b9650e77d4ab7809ecb0219685e7429222e7b43 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,120   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp37-cp37m-linux_armv7l.whl#sha256=49e6d6e858b81a9cb06fd1e8dfb1a6813af3e81f6f471e1473a782a4063ca3eb (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,121   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp37-cp37m-linux_armv6l.whl#sha256=49e6d6e858b81a9cb06fd1e8dfb1a6813af3e81f6f471e1473a782a4063ca3eb (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,121   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp39-cp39-linux_armv7l.whl#sha256=5cfda4f30e6f90d0f14fdd9d401fec01a00d3b528b9cd88614bc3161a158087a (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,122   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp39-cp39-linux_armv6l.whl#sha256=5cfda4f30e6f90d0f14fdd9d401fec01a00d3b528b9cd88614bc3161a158087a (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,122   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp37-cp37m-linux_armv7l.whl#sha256=c9442c9129d171b9470330209ab7822af7bdaeaaae306c2c891597b1267bfec5 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,123   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp37-cp37m-linux_armv6l.whl#sha256=c9442c9129d171b9470330209ab7822af7bdaeaaae306c2c891597b1267bfec5 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,123   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp39-cp39-linux_armv7l.whl#sha256=47ab27371c794d3c80f75be7a95551af23c6e6a52f55acc0bf15aca71c443d0b (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,124   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp39-cp39-linux_armv6l.whl#sha256=47ab27371c794d3c80f75be7a95551af23c6e6a52f55acc0bf15aca71c443d0b (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,125   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp37-cp37m-linux_armv7l.whl#sha256=dff92724f2cf8b25319328fe3e99d42581794b289ae551733a6615c659395b84 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,125   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp37-cp37m-linux_armv6l.whl#sha256=dff92724f2cf8b25319328fe3e99d42581794b289ae551733a6615c659395b84 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,126   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp39-cp39-linux_armv7l.whl#sha256=bd751f2807a45f17c0e9676ccda12b6edbbebf475c170e3ec27044838f1d5b82 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,126   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp39-cp39-linux_armv6l.whl#sha256=bd751f2807a45f17c0e9676ccda12b6edbbebf475c170e3ec27044838f1d5b82 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,127   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv7l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,128   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv6l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,128   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp311-cp311-linux_armv7l.whl#sha256=bef6e7259c029c9892522e445c7f1205d39811f71f9a90bf16770566dea86f31 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,128   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp311-cp311-linux_armv6l.whl#sha256=bef6e7259c029c9892522e445c7f1205d39811f71f9a90bf16770566dea86f31 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,129   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv7l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,129   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv6l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,130   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp37-cp37m-linux_armv7l.whl#sha256=a27ba6f102f456ee697a94e3336dc27b59746723f1054ffdd4229bc85b007dd1 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,131   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp37-cp37m-linux_armv6l.whl#sha256=a27ba6f102f456ee697a94e3336dc27b59746723f1054ffdd4229bc85b007dd1 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,131   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp311-cp311-linux_armv7l.whl#sha256=7e73de5f2261d43b7ce076f78698fe893948d8d7cc9c88c7ee3def9a035a4e68 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,132   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp311-cp311-linux_armv6l.whl#sha256=7e73de5f2261d43b7ce076f78698fe893948d8d7cc9c88c7ee3def9a035a4e68 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,132   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp39-cp39-linux_armv7l.whl#sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,133   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp39-cp39-linux_armv6l.whl#sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,134   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv7l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,134   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv6l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,135   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv7l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,135   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv6l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,135   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv7l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,136   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv6l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,136   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp311-cp311-linux_armv7l.whl#sha256=c2f9b6cb2cb584c68d74d0ee760d79c627644692dc8371d1189026b09a9dc068 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,137   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp311-cp311-linux_armv6l.whl#sha256=c2f9b6cb2cb584c68d74d0ee760d79c627644692dc8371d1189026b09a9dc068 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,138   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv7l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,138   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv6l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,139   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv7l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,139   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv6l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,140   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,140   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,141   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,142   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-24T23:17:06,142   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T23:17:06,143   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T23:17:06,143   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T23:17:06,144   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-24T23:17:06,144 Skipping link: not a file: https://www.piwheels.org/simple/pmx-biobb/
2023-09-24T23:17:06,145 Skipping link: not a file: https://pypi.org/simple/pmx-biobb/
2023-09-24T23:17:06,164 Given no hashes to check 1 links for project 'pmx-biobb': discarding no candidates
2023-09-24T23:17:06,182 Collecting pmx-biobb==4.0.1
2023-09-24T23:17:06,185   Created temporary directory: /tmp/pip-unpack-vm5q6f22
2023-09-24T23:17:06,682   Downloading pmx_biobb-4.0.1.tar.gz (3.8 MB)
2023-09-24T23:17:08,565   Added pmx-biobb==4.0.1 from https://files.pythonhosted.org/packages/b9/64/0a7b31944dfae299db2a1da0949f82c4843cbc8ee4abb2f2b3f716d38640/pmx_biobb-4.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-27xs9jgf'
2023-09-24T23:17:08,567   Running setup.py (path:/tmp/pip-wheel-rkfe8393/pmx-biobb_0d5a59c036d7465188a7e5036a0aaad9/setup.py) egg_info for package pmx-biobb
2023-09-24T23:17:08,568   Created temporary directory: /tmp/pip-pip-egg-info-plg65b2g
2023-09-24T23:17:08,569   Preparing metadata (setup.py): started
2023-09-24T23:17:08,570   Running command python setup.py egg_info
2023-09-24T23:17:09,616   running egg_info
2023-09-24T23:17:09,617   creating /tmp/pip-pip-egg-info-plg65b2g/pmx_biobb.egg-info
2023-09-24T23:17:09,641   writing /tmp/pip-pip-egg-info-plg65b2g/pmx_biobb.egg-info/PKG-INFO
2023-09-24T23:17:09,644   writing dependency_links to /tmp/pip-pip-egg-info-plg65b2g/pmx_biobb.egg-info/dependency_links.txt
2023-09-24T23:17:09,646   writing entry points to /tmp/pip-pip-egg-info-plg65b2g/pmx_biobb.egg-info/entry_points.txt
2023-09-24T23:17:09,647   writing requirements to /tmp/pip-pip-egg-info-plg65b2g/pmx_biobb.egg-info/requires.txt
2023-09-24T23:17:09,648   writing top-level names to /tmp/pip-pip-egg-info-plg65b2g/pmx_biobb.egg-info/top_level.txt
2023-09-24T23:17:09,649   writing manifest file '/tmp/pip-pip-egg-info-plg65b2g/pmx_biobb.egg-info/SOURCES.txt'
2023-09-24T23:17:09,720   reading manifest file '/tmp/pip-pip-egg-info-plg65b2g/pmx_biobb.egg-info/SOURCES.txt'
2023-09-24T23:17:09,722   reading manifest template 'MANIFEST.in'
2023-09-24T23:17:09,739   adding license file 'LICENSE'
2023-09-24T23:17:09,748   writing manifest file '/tmp/pip-pip-egg-info-plg65b2g/pmx_biobb.egg-info/SOURCES.txt'
2023-09-24T23:17:09,856   Preparing metadata (setup.py): finished with status 'done'
2023-09-24T23:17:09,860   Source in /tmp/pip-wheel-rkfe8393/pmx-biobb_0d5a59c036d7465188a7e5036a0aaad9 has version 4.0.1, which satisfies requirement pmx-biobb==4.0.1 from https://files.pythonhosted.org/packages/b9/64/0a7b31944dfae299db2a1da0949f82c4843cbc8ee4abb2f2b3f716d38640/pmx_biobb-4.0.1.tar.gz
2023-09-24T23:17:09,860   Removed pmx-biobb==4.0.1 from https://files.pythonhosted.org/packages/b9/64/0a7b31944dfae299db2a1da0949f82c4843cbc8ee4abb2f2b3f716d38640/pmx_biobb-4.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-27xs9jgf'
2023-09-24T23:17:09,866 Created temporary directory: /tmp/pip-unpack-8neoe_ug
2023-09-24T23:17:09,867 Created temporary directory: /tmp/pip-unpack-vjwj13fa
2023-09-24T23:17:09,873 Building wheels for collected packages: pmx-biobb
2023-09-24T23:17:09,877   Created temporary directory: /tmp/pip-wheel-pwv8151j
2023-09-24T23:17:09,878   Building wheel for pmx-biobb (setup.py): started
2023-09-24T23:17:09,879   Destination directory: /tmp/pip-wheel-pwv8151j
2023-09-24T23:17:09,879   Running command python setup.py bdist_wheel
2023-09-24T23:17:10,870   running bdist_wheel
2023-09-24T23:17:10,961   running build
2023-09-24T23:17:10,961   running build_py
2023-09-24T23:17:10,964   creating build
2023-09-24T23:17:10,964   creating build/lib.linux-armv7l-cpython-311
2023-09-24T23:17:10,965   creating build/lib.linux-armv7l-cpython-311/pmx
2023-09-24T23:17:10,966   copying src/pmx/_version.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-24T23:17:10,968   running egg_info
2023-09-24T23:17:11,020   writing src/pmx_biobb.egg-info/PKG-INFO
2023-09-24T23:17:11,022   writing dependency_links to src/pmx_biobb.egg-info/dependency_links.txt
2023-09-24T23:17:11,024   writing entry points to src/pmx_biobb.egg-info/entry_points.txt
2023-09-24T23:17:11,026   writing requirements to src/pmx_biobb.egg-info/requires.txt
2023-09-24T23:17:11,027   writing top-level names to src/pmx_biobb.egg-info/top_level.txt
2023-09-24T23:17:11,053   reading manifest file 'src/pmx_biobb.egg-info/SOURCES.txt'
2023-09-24T23:17:11,059   reading manifest template 'MANIFEST.in'
2023-09-24T23:17:11,072   adding license file 'LICENSE'
2023-09-24T23:17:11,083   writing manifest file 'src/pmx_biobb.egg-info/SOURCES.txt'
2023-09-24T23:17:11,085   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.data' is absent from the `packages` configuration.
2023-09-24T23:17:11,086   !!

2023-09-24T23:17:11,087           ********************************************************************************
2023-09-24T23:17:11,087           ############################
2023-09-24T23:17:11,088           # Package would be ignored #
2023-09-24T23:17:11,088           ############################
2023-09-24T23:17:11,089           Python recognizes 'pmx.data' as an importable package[^1],
2023-09-24T23:17:11,089           but it is absent from setuptools' `packages` configuration.

2023-09-24T23:17:11,090           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-24T23:17:11,091           package, please make sure that 'pmx.data' is explicitly added
2023-09-24T23:17:11,091           to the `packages` configuration field.

2023-09-24T23:17:11,092           Alternatively, you can also rely on setuptools' discovery methods
2023-09-24T23:17:11,093           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-24T23:17:11,094           instead of `find_packages(...)`/`find:`).

2023-09-24T23:17:11,095           You can read more about "package discovery" on setuptools documentation page:

2023-09-24T23:17:11,096           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-24T23:17:11,097           If you don't want 'pmx.data' to be distributed and are
2023-09-24T23:17:11,097           already explicitly excluding 'pmx.data' via
2023-09-24T23:17:11,097           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-24T23:17:11,098           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-24T23:17:11,098           combination with a more fine grained `package-data` configuration.

2023-09-24T23:17:11,099           You can read more about "package data files" on setuptools documentation page:

2023-09-24T23:17:11,100           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-24T23:17:11,101           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-24T23:17:11,101                 even if it does not contain any `.py` files.
2023-09-24T23:17:11,102                 On the other hand, currently there is no concept of package data
2023-09-24T23:17:11,102                 directory, all directories are treated like packages.
2023-09-24T23:17:11,103           ********************************************************************************

2023-09-24T23:17:11,103   !!
2023-09-24T23:17:11,104     check.warn(importable)
2023-09-24T23:17:11,104   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.data.mutff45' is absent from the `packages` configuration.
2023-09-24T23:17:11,105   !!

2023-09-24T23:17:11,105           ********************************************************************************
2023-09-24T23:17:11,106           ############################
2023-09-24T23:17:11,106           # Package would be ignored #
2023-09-24T23:17:11,107           ############################
2023-09-24T23:17:11,107           Python recognizes 'pmx.data.mutff45' as an importable package[^1],
2023-09-24T23:17:11,108           but it is absent from setuptools' `packages` configuration.

2023-09-24T23:17:11,109           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-24T23:17:11,109           package, please make sure that 'pmx.data.mutff45' is explicitly added
2023-09-24T23:17:11,110           to the `packages` configuration field.

2023-09-24T23:17:11,111           Alternatively, you can also rely on setuptools' discovery methods
2023-09-24T23:17:11,111           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-24T23:17:11,112           instead of `find_packages(...)`/`find:`).

2023-09-24T23:17:11,113           You can read more about "package discovery" on setuptools documentation page:

2023-09-24T23:17:11,114           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-24T23:17:11,115           If you don't want 'pmx.data.mutff45' to be distributed and are
2023-09-24T23:17:11,116           already explicitly excluding 'pmx.data.mutff45' via
2023-09-24T23:17:11,116           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-24T23:17:11,117           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-24T23:17:11,117           combination with a more fine grained `package-data` configuration.

2023-09-24T23:17:11,118           You can read more about "package data files" on setuptools documentation page:

2023-09-24T23:17:11,119           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-24T23:17:11,121           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-24T23:17:11,122                 even if it does not contain any `.py` files.
2023-09-24T23:17:11,122                 On the other hand, currently there is no concept of package data
2023-09-24T23:17:11,123                 directory, all directories are treated like packages.
2023-09-24T23:17:11,124           ********************************************************************************

2023-09-24T23:17:11,125   !!
2023-09-24T23:17:11,126     check.warn(importable)
2023-09-24T23:17:11,126   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.data.mutff45dna' is absent from the `packages` configuration.
2023-09-24T23:17:11,126   !!

2023-09-24T23:17:11,127           ********************************************************************************
2023-09-24T23:17:11,128           ############################
2023-09-24T23:17:11,128           # Package would be ignored #
2023-09-24T23:17:11,128           ############################
2023-09-24T23:17:11,129           Python recognizes 'pmx.data.mutff45dna' as an importable package[^1],
2023-09-24T23:17:11,129           but it is absent from setuptools' `packages` configuration.

2023-09-24T23:17:11,130           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-24T23:17:11,130           package, please make sure that 'pmx.data.mutff45dna' is explicitly added
2023-09-24T23:17:11,131           to the `packages` configuration field.

2023-09-24T23:17:11,132           Alternatively, you can also rely on setuptools' discovery methods
2023-09-24T23:17:11,132           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-24T23:17:11,133           instead of `find_packages(...)`/`find:`).

2023-09-24T23:17:11,134           You can read more about "package discovery" on setuptools documentation page:

2023-09-24T23:17:11,134           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-24T23:17:11,135           If you don't want 'pmx.data.mutff45dna' to be distributed and are
2023-09-24T23:17:11,136           already explicitly excluding 'pmx.data.mutff45dna' via
2023-09-24T23:17:11,136           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-24T23:17:11,137           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-24T23:17:11,138           combination with a more fine grained `package-data` configuration.

2023-09-24T23:17:11,139           You can read more about "package data files" on setuptools documentation page:

2023-09-24T23:17:11,140           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-24T23:17:11,142           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-24T23:17:11,143                 even if it does not contain any `.py` files.
2023-09-24T23:17:11,144                 On the other hand, currently there is no concept of package data
2023-09-24T23:17:11,144                 directory, all directories are treated like packages.
2023-09-24T23:17:11,145           ********************************************************************************

2023-09-24T23:17:11,146   !!
2023-09-24T23:17:11,147     check.warn(importable)
2023-09-24T23:17:11,147   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.extensions.pmx' is absent from the `packages` configuration.
2023-09-24T23:17:11,148   !!

2023-09-24T23:17:11,149           ********************************************************************************
2023-09-24T23:17:11,149           ############################
2023-09-24T23:17:11,150           # Package would be ignored #
2023-09-24T23:17:11,151           ############################
2023-09-24T23:17:11,151           Python recognizes 'pmx.extensions.pmx' as an importable package[^1],
2023-09-24T23:17:11,152           but it is absent from setuptools' `packages` configuration.

2023-09-24T23:17:11,153           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-24T23:17:11,154           package, please make sure that 'pmx.extensions.pmx' is explicitly added
2023-09-24T23:17:11,154           to the `packages` configuration field.

2023-09-24T23:17:11,155           Alternatively, you can also rely on setuptools' discovery methods
2023-09-24T23:17:11,156           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-24T23:17:11,157           instead of `find_packages(...)`/`find:`).

2023-09-24T23:17:11,158           You can read more about "package discovery" on setuptools documentation page:

2023-09-24T23:17:11,159           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-24T23:17:11,159           If you don't want 'pmx.extensions.pmx' to be distributed and are
2023-09-24T23:17:11,160           already explicitly excluding 'pmx.extensions.pmx' via
2023-09-24T23:17:11,160           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-24T23:17:11,161           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-24T23:17:11,161           combination with a more fine grained `package-data` configuration.

2023-09-24T23:17:11,162           You can read more about "package data files" on setuptools documentation page:

2023-09-24T23:17:11,163           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-24T23:17:11,164           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-24T23:17:11,165                 even if it does not contain any `.py` files.
2023-09-24T23:17:11,165                 On the other hand, currently there is no concept of package data
2023-09-24T23:17:11,165                 directory, all directories are treated like packages.
2023-09-24T23:17:11,166           ********************************************************************************

2023-09-24T23:17:11,167   !!
2023-09-24T23:17:11,167     check.warn(importable)
2023-09-24T23:17:11,168   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.extensions.xdr' is absent from the `packages` configuration.
2023-09-24T23:17:11,168   !!

2023-09-24T23:17:11,169           ********************************************************************************
2023-09-24T23:17:11,170           ############################
2023-09-24T23:17:11,170           # Package would be ignored #
2023-09-24T23:17:11,171           ############################
2023-09-24T23:17:11,172           Python recognizes 'pmx.extensions.xdr' as an importable package[^1],
2023-09-24T23:17:11,172           but it is absent from setuptools' `packages` configuration.

2023-09-24T23:17:11,173           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-24T23:17:11,174           package, please make sure that 'pmx.extensions.xdr' is explicitly added
2023-09-24T23:17:11,175           to the `packages` configuration field.

2023-09-24T23:17:11,176           Alternatively, you can also rely on setuptools' discovery methods
2023-09-24T23:17:11,177           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-24T23:17:11,177           instead of `find_packages(...)`/`find:`).

2023-09-24T23:17:11,178           You can read more about "package discovery" on setuptools documentation page:

2023-09-24T23:17:11,179           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-24T23:17:11,180           If you don't want 'pmx.extensions.xdr' to be distributed and are
2023-09-24T23:17:11,181           already explicitly excluding 'pmx.extensions.xdr' via
2023-09-24T23:17:11,182           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-24T23:17:11,182           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-24T23:17:11,183           combination with a more fine grained `package-data` configuration.

2023-09-24T23:17:11,184           You can read more about "package data files" on setuptools documentation page:

2023-09-24T23:17:11,185           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-24T23:17:11,187           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-24T23:17:11,187                 even if it does not contain any `.py` files.
2023-09-24T23:17:11,188                 On the other hand, currently there is no concept of package data
2023-09-24T23:17:11,189                 directory, all directories are treated like packages.
2023-09-24T23:17:11,213           ********************************************************************************

2023-09-24T23:17:11,253   !!
2023-09-24T23:17:11,296     check.warn(importable)
2023-09-24T23:17:11,329   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.scripts' is absent from the `packages` configuration.
2023-09-24T23:17:11,356   !!

2023-09-24T23:17:11,388           ********************************************************************************
2023-09-24T23:17:11,391           ############################
2023-09-24T23:17:11,392           # Package would be ignored #
2023-09-24T23:17:11,392           ############################
2023-09-24T23:17:11,393           Python recognizes 'pmx.scripts' as an importable package[^1],
2023-09-24T23:17:11,393           but it is absent from setuptools' `packages` configuration.

2023-09-24T23:17:11,394           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-24T23:17:11,394           package, please make sure that 'pmx.scripts' is explicitly added
2023-09-24T23:17:11,395           to the `packages` configuration field.

2023-09-24T23:17:11,396           Alternatively, you can also rely on setuptools' discovery methods
2023-09-24T23:17:11,396           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-24T23:17:11,397           instead of `find_packages(...)`/`find:`).

2023-09-24T23:17:11,398           You can read more about "package discovery" on setuptools documentation page:

2023-09-24T23:17:11,399           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-24T23:17:11,400           If you don't want 'pmx.scripts' to be distributed and are
2023-09-24T23:17:11,400           already explicitly excluding 'pmx.scripts' via
2023-09-24T23:17:11,401           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-24T23:17:11,403           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-24T23:17:11,403           combination with a more fine grained `package-data` configuration.

2023-09-24T23:17:11,405           You can read more about "package data files" on setuptools documentation page:

2023-09-24T23:17:11,406           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-24T23:17:11,407           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-24T23:17:11,408                 even if it does not contain any `.py` files.
2023-09-24T23:17:11,409                 On the other hand, currently there is no concept of package data
2023-09-24T23:17:11,409                 directory, all directories are treated like packages.
2023-09-24T23:17:11,410           ********************************************************************************

2023-09-24T23:17:11,411   !!
2023-09-24T23:17:11,412     check.warn(importable)
2023-09-24T23:17:11,412   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.scripts.ligands' is absent from the `packages` configuration.
2023-09-24T23:17:11,413   !!

2023-09-24T23:17:11,414           ********************************************************************************
2023-09-24T23:17:11,414           ############################
2023-09-24T23:17:11,415           # Package would be ignored #
2023-09-24T23:17:11,415           ############################
2023-09-24T23:17:11,417           Python recognizes 'pmx.scripts.ligands' as an importable package[^1],
2023-09-24T23:17:11,418           but it is absent from setuptools' `packages` configuration.

2023-09-24T23:17:11,419           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-24T23:17:11,420           package, please make sure that 'pmx.scripts.ligands' is explicitly added
2023-09-24T23:17:11,420           to the `packages` configuration field.

2023-09-24T23:17:11,423           Alternatively, you can also rely on setuptools' discovery methods
2023-09-24T23:17:11,423           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-24T23:17:11,424           instead of `find_packages(...)`/`find:`).

2023-09-24T23:17:11,425           You can read more about "package discovery" on setuptools documentation page:

2023-09-24T23:17:11,426           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-24T23:17:11,427           If you don't want 'pmx.scripts.ligands' to be distributed and are
2023-09-24T23:17:11,427           already explicitly excluding 'pmx.scripts.ligands' via
2023-09-24T23:17:11,428           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-24T23:17:11,428           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-24T23:17:11,429           combination with a more fine grained `package-data` configuration.

2023-09-24T23:17:11,430           You can read more about "package data files" on setuptools documentation page:

2023-09-24T23:17:11,431           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-24T23:17:11,433           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-24T23:17:11,433                 even if it does not contain any `.py` files.
2023-09-24T23:17:11,434                 On the other hand, currently there is no concept of package data
2023-09-24T23:17:11,434                 directory, all directories are treated like packages.
2023-09-24T23:17:11,435           ********************************************************************************

2023-09-24T23:17:11,436   !!
2023-09-24T23:17:11,436     check.warn(importable)
2023-09-24T23:17:11,437   creating build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-24T23:17:11,437   copying src/pmx/data/bbdep.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-24T23:17:11,438   copying src/pmx/data/blosum62_new.mat -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-24T23:17:11,439   copying src/pmx/data/bp.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-24T23:17:11,439   copying src/pmx/data/bp_amber.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-24T23:17:11,440   copying src/pmx/data/bp_charmm.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-24T23:17:11,440   copying src/pmx/data/rna.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-24T23:17:11,441   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-24T23:17:11,441   copying src/pmx/data/mutff45/atommass.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-24T23:17:11,442   copying src/pmx/data/mutff45/elements.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-24T23:17:11,442   copying src/pmx/data/mutff45/spc216.gro -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-24T23:17:11,443   copying src/pmx/data/mutff45/specbond.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-24T23:17:11,443   copying src/pmx/data/mutff45/xlateat.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45
2023-09-24T23:17:11,444   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,444   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,445   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,446   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,447   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,449   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,452   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,475   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,478   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,480   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,482   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,485   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,488   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,490   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,492   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,494   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,547   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,574   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,576   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,578   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,581   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,583   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,586   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,588   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,590   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,592   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,595   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,597   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,599   copying src/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,601   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,602   copying src/pmx/data/mutff45/amber99sbmut.ff/Makefile.am -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,604   copying src/pmx/data/mutff45/amber99sbmut.ff/Makefile.in -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,606   copying src/pmx/data/mutff45/amber99sbmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,608   copying src/pmx/data/mutff45/amber99sbmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,611   copying src/pmx/data/mutff45/amber99sbmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,613   copying src/pmx/data/mutff45/amber99sbmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,615   copying src/pmx/data/mutff45/amber99sbmut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,617   copying src/pmx/data/mutff45/amber99sbmut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,619   copying src/pmx/data/mutff45/amber99sbmut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,621   copying src/pmx/data/mutff45/amber99sbmut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,624   copying src/pmx/data/mutff45/amber99sbmut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,626   copying src/pmx/data/mutff45/amber99sbmut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,627   copying src/pmx/data/mutff45/amber99sbmut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,629   copying src/pmx/data/mutff45/amber99sbmut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,632   copying src/pmx/data/mutff45/amber99sbmut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,635   copying src/pmx/data/mutff45/amber99sbmut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,636   copying src/pmx/data/mutff45/amber99sbmut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,638   copying src/pmx/data/mutff45/amber99sbmut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,640   copying src/pmx/data/mutff45/amber99sbmut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,643   copying src/pmx/data/mutff45/amber99sbmut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,645   copying src/pmx/data/mutff45/amber99sbmut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,647   copying src/pmx/data/mutff45/amber99sbmut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,649   copying src/pmx/data/mutff45/amber99sbmut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:11,651   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,652   copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,654   copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,657   copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,659   copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,660   copying src/pmx/data/mutff45/charmm22starmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,663   copying src/pmx/data/mutff45/charmm22starmut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,665   copying src/pmx/data/mutff45/charmm22starmut.ff/dna.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,667   copying src/pmx/data/mutff45/charmm22starmut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,669   copying src/pmx/data/mutff45/charmm22starmut.ff/dna.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,671   copying src/pmx/data/mutff45/charmm22starmut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,674   copying src/pmx/data/mutff45/charmm22starmut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,678   copying src/pmx/data/mutff45/charmm22starmut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,681   copying src/pmx/data/mutff45/charmm22starmut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,684   copying src/pmx/data/mutff45/charmm22starmut.ff/gb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,685   copying src/pmx/data/mutff45/charmm22starmut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,687   copying src/pmx/data/mutff45/charmm22starmut.ff/lipids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,689   copying src/pmx/data/mutff45/charmm22starmut.ff/lipids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,693   copying src/pmx/data/mutff45/charmm22starmut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,695   copying src/pmx/data/mutff45/charmm22starmut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,697   copying src/pmx/data/mutff45/charmm22starmut.ff/rna.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,699   copying src/pmx/data/mutff45/charmm22starmut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,701   copying src/pmx/data/mutff45/charmm22starmut.ff/rna.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,703   copying src/pmx/data/mutff45/charmm22starmut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,705   copying src/pmx/data/mutff45/charmm22starmut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,708   copying src/pmx/data/mutff45/charmm22starmut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,710   copying src/pmx/data/mutff45/charmm22starmut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,712   copying src/pmx/data/mutff45/charmm22starmut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,715   copying src/pmx/data/mutff45/charmm22starmut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,717   copying src/pmx/data/mutff45/charmm22starmut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,718   copying src/pmx/data/mutff45/charmm22starmut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,720   copying src/pmx/data/mutff45/charmm22starmut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:11,722   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-24T23:17:11,723   copying src/pmx/data/mutff45/charmm36mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff
2023-09-24T23:17:11,726   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna
2023-09-24T23:17:11,726   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,727   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,730   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,733   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,735   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,737   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,739   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,741   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,746   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,748   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,752   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,755   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,778   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,781   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,783   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,785   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,787   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,790   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,792   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,795   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,798   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,799   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,802   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,804   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,851   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,873   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,880   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,884   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,887   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,889   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,891   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,893   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,895   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,898   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,900   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,902   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,904   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,906   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,908   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,910   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,911   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:11,914   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,914   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,917   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,919   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,922   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,923   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,925   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,930   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,932   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,934   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,937   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,940   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,942   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,944   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,947   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,950   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,953   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,955   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,957   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,959   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,961   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,969   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,973   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,976   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,979   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,980   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,983   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,984   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,987   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,989   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,991   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,993   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,995   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,997   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:11,999   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:12,001   copying src/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:12,003   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,004   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,008   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,009   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,012   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,014   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,016   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,018   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,021   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,023   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,025   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,048   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/merged.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,051   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,057   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,062   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/nbfix.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,063   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,065   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,067   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,069   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,071   copying src/pmx/data/mutff45dna/charmm36m-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:12,073   creating build/lib.linux-armv7l-cpython-311/pmx/extensions
2023-09-24T23:17:12,074   creating build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-24T23:17:12,076   copying src/pmx/extensions/pmx/Energy.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-24T23:17:12,079   copying src/pmx/extensions/pmx/Geometry.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-24T23:17:12,083   copying src/pmx/extensions/pmx/Geometry.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-24T23:17:12,086   copying src/pmx/extensions/pmx/cpp_test.cpp -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-24T23:17:12,088   copying src/pmx/extensions/pmx/init.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-24T23:17:12,091   copying src/pmx/extensions/pmx/pmx.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-24T23:17:12,093   copying src/pmx/extensions/pmx/wrap_Geometry.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-24T23:17:12,097   creating build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-24T23:17:12,098   copying src/pmx/extensions/xdr/trr2xtc.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-24T23:17:12,101   copying src/pmx/extensions/xdr/xdrfile.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-24T23:17:12,106   copying src/pmx/extensions/xdr/xdrfile.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-24T23:17:12,109   copying src/pmx/extensions/xdr/xdrfile_c_test.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-24T23:17:12,112   copying src/pmx/extensions/xdr/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-24T23:17:12,116   copying src/pmx/extensions/xdr/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-24T23:17:12,119   copying src/pmx/extensions/xdr/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-24T23:17:12,121   copying src/pmx/extensions/xdr/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-24T23:17:12,124   creating build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-24T23:17:12,125   copying src/pmx/scripts/md_setup.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-24T23:17:12,128   creating build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands
2023-09-24T23:17:12,129   copying src/pmx/scripts/ligands/atoms_to_morph.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands
2023-09-24T23:17:12,134   copying src/pmx/scripts/ligands/atoms_to_morph_rdkit2018.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands
2023-09-24T23:17:12,139   copying src/pmx/scripts/ligands/build_mst_graph.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands
2023-09-24T23:17:12,142   copying src/pmx/scripts/ligands/make_hybrid.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands
2023-09-24T23:17:12,146   copying src/pmx/scripts/ligands/one_ff_file.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands
2023-09-24T23:17:12,150   UPDATING build/lib.linux-armv7l-cpython-311/pmx/_version.py
2023-09-24T23:17:12,151   set build/lib.linux-armv7l-cpython-311/pmx/_version.py to '4.0.1'
2023-09-24T23:17:12,152   running build_ext
2023-09-24T23:17:12,929   building 'pmx._pmx' extension
2023-09-24T23:17:12,929   creating build/temp.linux-armv7l-cpython-311
2023-09-24T23:17:12,930   creating build/temp.linux-armv7l-cpython-311/src
2023-09-24T23:17:12,930   creating build/temp.linux-armv7l-cpython-311/src/pmx
2023-09-24T23:17:12,931   creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions
2023-09-24T23:17:12,932   creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx
2023-09-24T23:17:12,933   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/Energy.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Energy.o
2023-09-24T23:17:14,746   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/Geometry.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Geometry.o
2023-09-24T23:17:15,144   src/pmx/extensions/pmx/Geometry.c: In function ‘spread_atoms_on_grid’:
2023-09-24T23:17:15,145   src/pmx/extensions/pmx/Geometry.c:527:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable]
2023-09-24T23:17:15,145     527 |   int nx, ny, nz;
2023-09-24T23:17:15,146         |               ^~
2023-09-24T23:17:15,147   src/pmx/extensions/pmx/Geometry.c: In function ‘search_neighbors’:
2023-09-24T23:17:15,147   src/pmx/extensions/pmx/Geometry.c:586:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable]
2023-09-24T23:17:15,148     586 |   int nx, ny, nz;
2023-09-24T23:17:15,150         |               ^~
2023-09-24T23:17:17,015   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/init.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/init.o
2023-09-24T23:17:17,437   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/wrap_Geometry.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/wrap_Geometry.o
2023-09-24T23:17:19,017   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Energy.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Geometry.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/init.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/wrap_Geometry.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/pmx/_pmx.cpython-311-arm-linux-gnueabihf.so
2023-09-24T23:17:19,147   building 'pmx._xdrio' extension
2023-09-24T23:17:19,147   creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr
2023-09-24T23:17:19,148   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.11 -c src/pmx/extensions/xdr/xdrfile.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile.o
2023-09-24T23:17:19,407   src/pmx/extensions/xdr/xdrfile.c:5:2: warning: "/*" within comment [-Wcomment]
2023-09-24T23:17:19,408       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-24T23:17:19,408         |
2023-09-24T23:17:19,499   In file included from src/pmx/extensions/xdr/xdrfile.c:60:
2023-09-24T23:17:19,500   src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-24T23:17:19,500       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-24T23:17:19,501         |
2023-09-24T23:17:19,508   src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofint’:
2023-09-24T23:17:19,509   src/pmx/extensions/xdr/xdrfile.c:499:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-24T23:17:19,509     499 |     while (size >= num && num_of_bits < 32)
2023-09-24T23:17:19,510         |                 ^~
2023-09-24T23:17:19,511   src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofints’:
2023-09-24T23:17:19,511   src/pmx/extensions/xdr/xdrfile.c:545:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T23:17:19,512     545 |     while (bytes[num_of_bytes] >= num)
2023-09-24T23:17:19,513         |                                ^~
2023-09-24T23:17:19,514   src/pmx/extensions/xdr/xdrfile.c: In function ‘encodeints’:
2023-09-24T23:17:19,515   src/pmx/extensions/xdr/xdrfile.c:654:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-24T23:17:19,516     654 |     if (num_of_bits >= num_of_bytes * 8)
2023-09-24T23:17:19,517         |                     ^~
2023-09-24T23:17:19,517   src/pmx/extensions/xdr/xdrfile.c:656:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-24T23:17:19,518     656 |                 for (i = 0; i < num_of_bytes; i++)
2023-09-24T23:17:19,519         |                               ^
2023-09-24T23:17:19,520   src/pmx/extensions/xdr/xdrfile.c:664:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-24T23:17:19,520     664 |                 for (i = 0; i < num_of_bytes-1; i++)
2023-09-24T23:17:19,521         |                               ^
2023-09-24T23:17:19,522   src/pmx/extensions/xdr/xdrfile.c: In function ‘decodebits’:
2023-09-24T23:17:19,522   src/pmx/extensions/xdr/xdrfile.c:704:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T23:17:19,523     704 |                 if (lastbits < num_of_bits)
2023-09-24T23:17:19,523         |                              ^
2023-09-24T23:17:19,524   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_float’:
2023-09-24T23:17:19,525   src/pmx/extensions/xdr/xdrfile.c:814:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T23:17:19,525     814 |         if(size3>xfp->buf1size)
2023-09-24T23:17:19,526         |                 ^
2023-09-24T23:17:19,527   src/pmx/extensions/xdr/xdrfile.c:866:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T23:17:19,527     866 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-24T23:17:19,528         |                          ^
2023-09-24T23:17:19,529   src/pmx/extensions/xdr/xdrfile.c:866:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-24T23:17:19,529     866 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-24T23:17:19,530         |                                            ^~~
2023-09-24T23:17:19,530   src/pmx/extensions/xdr/xdrfile.c:792:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-09-24T23:17:19,531     792 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-09-24T23:17:19,531         |                                ^~~~~~
2023-09-24T23:17:19,532   src/pmx/extensions/xdr/xdrfile.c:789:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-09-24T23:17:19,532     789 |         int smallidx, minidx, maxidx;
2023-09-24T23:17:19,533         |                       ^~~~~~
2023-09-24T23:17:19,534   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2023-09-24T23:17:19,534   src/pmx/extensions/xdr/xdrfile.c:1010:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T23:17:19,534    1010 |         if(size3>xfp->buf1size)
2023-09-24T23:17:19,535         |                 ^
2023-09-24T23:17:19,535   src/pmx/extensions/xdr/xdrfile.c:1133:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-24T23:17:19,536    1133 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-09-24T23:17:19,536         |                         ^
2023-09-24T23:17:19,537   src/pmx/extensions/xdr/xdrfile.c:1139:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T23:17:19,538    1139 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-24T23:17:19,538         |                          ^
2023-09-24T23:17:19,539   src/pmx/extensions/xdr/xdrfile.c:1139:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-24T23:17:19,540    1139 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-24T23:17:19,540         |                                            ^~~
2023-09-24T23:17:19,541   src/pmx/extensions/xdr/xdrfile.c:1271:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-24T23:17:19,541    1271 |         if(tmp==(unsigned int)buf2[0])
2023-09-24T23:17:19,542         |               ^~
2023-09-24T23:17:19,542   src/pmx/extensions/xdr/xdrfile.c:999:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-09-24T23:17:19,543     999 |         int errval=1;
2023-09-24T23:17:19,543         |             ^~~~~~
2023-09-24T23:17:19,544   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_double’:
2023-09-24T23:17:19,545   src/pmx/extensions/xdr/xdrfile.c:1311:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T23:17:19,545    1311 |         if(size3>xfp->buf1size)
2023-09-24T23:17:19,546         |                 ^
2023-09-24T23:17:19,547   src/pmx/extensions/xdr/xdrfile.c:1366:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T23:17:19,547    1366 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-24T23:17:19,548         |                          ^
2023-09-24T23:17:19,549   src/pmx/extensions/xdr/xdrfile.c:1366:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-24T23:17:19,550    1366 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-24T23:17:19,551         |                                            ^~~
2023-09-24T23:17:19,553   src/pmx/extensions/xdr/xdrfile.c:1288:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-09-24T23:17:19,553    1288 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-09-24T23:17:19,553         |                                ^~~~~~
2023-09-24T23:17:19,554   src/pmx/extensions/xdr/xdrfile.c:1285:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-09-24T23:17:19,554    1285 |         int smallidx, minidx, maxidx;
2023-09-24T23:17:19,555         |                       ^~~~~~
2023-09-24T23:17:19,555   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2023-09-24T23:17:19,556   src/pmx/extensions/xdr/xdrfile.c:1502:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T23:17:19,557    1502 |         if(size3>xfp->buf1size) {
2023-09-24T23:17:19,557         |                 ^
2023-09-24T23:17:19,564   src/pmx/extensions/xdr/xdrfile.c:1617:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-24T23:17:19,565    1617 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-09-24T23:17:19,565         |                         ^
2023-09-24T23:17:19,566   src/pmx/extensions/xdr/xdrfile.c:1622:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-24T23:17:19,567    1622 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-24T23:17:19,567         |                          ^
2023-09-24T23:17:19,568   src/pmx/extensions/xdr/xdrfile.c:1622:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-24T23:17:19,569    1622 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-24T23:17:19,570         |                                            ^~~
2023-09-24T23:17:19,575   src/pmx/extensions/xdr/xdrfile.c:1732:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-24T23:17:19,576    1732 |         if(tmp==(unsigned int)buf2[0])
2023-09-24T23:17:19,577         |               ^~
2023-09-24T23:17:19,578   src/pmx/extensions/xdr/xdrfile.c:1492:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-09-24T23:17:19,578    1492 |         int errval=1;
2023-09-24T23:17:19,579         |             ^~~~~~
2023-09-24T23:17:22,159   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.11 -c src/pmx/extensions/xdr/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_trr.o
2023-09-24T23:17:22,200   src/pmx/extensions/xdr/xdrfile_trr.c:5:2: warning: "/*" within comment [-Wcomment]
2023-09-24T23:17:22,201       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-24T23:17:22,201         |
2023-09-24T23:17:22,240   In file included from src/pmx/extensions/xdr/xdrfile_trr.c:41:
2023-09-24T23:17:22,241   src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-24T23:17:22,242       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-24T23:17:22,242         |
2023-09-24T23:17:22,243   In file included from src/pmx/extensions/xdr/xdrfile_trr.c:42:
2023-09-24T23:17:22,244   src/pmx/extensions/xdr/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-24T23:17:22,245       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-24T23:17:22,245         |
2023-09-24T23:17:22,247   src/pmx/extensions/xdr/xdrfile_trr.c: In function ‘do_trnheader’:
2023-09-24T23:17:22,247   src/pmx/extensions/xdr/xdrfile_trr.c:108:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-24T23:17:22,248     108 |         if (slen != strlen(version)+1)
2023-09-24T23:17:22,248         |                  ^~
2023-09-24T23:17:22,249   src/pmx/extensions/xdr/xdrfile_trr.c:118:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-24T23:17:22,249     118 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2023-09-24T23:17:22,250         |                                              ^~
2023-09-24T23:17:22,939   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.11 -c src/pmx/extensions/xdr/xdrfile_xtc.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_xtc.o
2023-09-24T23:17:23,011   In file included from src/pmx/extensions/xdr/xdrfile_xtc.c:31:
2023-09-24T23:17:23,012   src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-24T23:17:23,012       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-24T23:17:23,013         |
2023-09-24T23:17:23,013   In file included from src/pmx/extensions/xdr/xdrfile_xtc.c:32:
2023-09-24T23:17:23,014   src/pmx/extensions/xdr/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-24T23:17:23,014       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-24T23:17:23,015         |
2023-09-24T23:17:23,016   src/pmx/extensions/xdr/xdrfile_xtc.c: In function ‘xtc_coord’:
2023-09-24T23:17:23,017   src/pmx/extensions/xdr/xdrfile_xtc.c:66:15: warning: unused variable ‘j’ [-Wunused-variable]
2023-09-24T23:17:23,018      66 |         int i,j,result;
2023-09-24T23:17:23,018         |               ^
2023-09-24T23:17:23,019   src/pmx/extensions/xdr/xdrfile_xtc.c:66:13: warning: unused variable ‘i’ [-Wunused-variable]
2023-09-24T23:17:23,020      66 |         int i,j,result;
2023-09-24T23:17:23,020         |             ^
2023-09-24T23:17:23,131   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_trr.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_xtc.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so
2023-09-24T23:17:23,259   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-24T23:17:23,259   !!

2023-09-24T23:17:23,260           ********************************************************************************
2023-09-24T23:17:23,261           Please avoid running ``setup.py`` directly.
2023-09-24T23:17:23,262           Instead, use pypa/build, pypa/installer or other
2023-09-24T23:17:23,262           standards-based tools.

2023-09-24T23:17:23,263           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-24T23:17:23,264           ********************************************************************************

2023-09-24T23:17:23,265   !!
2023-09-24T23:17:23,266     self.initialize_options()
2023-09-24T23:17:23,283   installing to build/bdist.linux-armv7l/wheel
2023-09-24T23:17:23,284   running install
2023-09-24T23:17:23,308   running install_lib
2023-09-24T23:17:23,331   creating build/bdist.linux-armv7l
2023-09-24T23:17:23,332   creating build/bdist.linux-armv7l/wheel
2023-09-24T23:17:23,333   creating build/bdist.linux-armv7l/wheel/pmx
2023-09-24T23:17:23,334   copying build/lib.linux-armv7l-cpython-311/pmx/_pmx.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx
2023-09-24T23:17:23,340   creating build/bdist.linux-armv7l/wheel/pmx/data
2023-09-24T23:17:23,341   copying build/lib.linux-armv7l-cpython-311/pmx/data/bp_amber.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-24T23:17:23,345   copying build/lib.linux-armv7l-cpython-311/pmx/data/rna.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-24T23:17:23,348   copying build/lib.linux-armv7l-cpython-311/pmx/data/bp_charmm.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-24T23:17:23,353   copying build/lib.linux-armv7l-cpython-311/pmx/data/blosum62_new.mat -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-24T23:17:23,354   copying build/lib.linux-armv7l-cpython-311/pmx/data/bbdep.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-24T23:17:23,740   copying build/lib.linux-armv7l-cpython-311/pmx/data/bp.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-24T23:17:23,745   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna
2023-09-24T23:17:23,747   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,748   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,750   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,751   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,753   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,755   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,757   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,763   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,784   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,786   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,788   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,790   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,792   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,793   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,795   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,797   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/nbfix.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,799   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,801   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,808   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/merged.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,810   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/charmm36m-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2023-09-24T23:17:23,814   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,815   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,817   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,819   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,820   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,823   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,824   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,826   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,827   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,833   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,834   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,836   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,838   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,840   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,842   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,844   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,848   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,851   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,853   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,855   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,857   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,858   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,860   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,862   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,863   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,866   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,868   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,870   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,873   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,876   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,878   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,880   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,882   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,891   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,893   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,895   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:23,899   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:23,900   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:23,929   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:23,931   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:23,934   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:23,936   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:23,938   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:23,940   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:23,943   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:23,945   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:23,951   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:23,953   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:23,956   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,570   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,576   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,581   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,587   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,644   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,649   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,665   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,748   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,751   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,754   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,757   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,793   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,795   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,798   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,801   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,804   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,807   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,810   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,814   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,821   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,830   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,839   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,844   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,847   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,850   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,860   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,864   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,866   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2023-09-24T23:17:25,871   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-24T23:17:25,874   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-24T23:17:25,875   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm36mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2023-09-24T23:17:25,878   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,879   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,882   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,884   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,886   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,889   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,891   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,893   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/ffnanonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,898   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,902   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,905   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,907   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,914   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/dna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,918   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,922   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/lipids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,926   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,929   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,933   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/rna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,936   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,939   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,941   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,944   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,947   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/lipids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,953   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/dna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,958   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,962   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,965   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,968   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,970   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,972   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,974   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,977   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/charmm22starmut.ff/rna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2023-09-24T23:17:25,979   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/elements.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-24T23:17:25,982   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/specbond.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-24T23:17:25,984   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/atommass.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-24T23:17:25,986   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/xlateat.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-24T23:17:25,990   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:25,991   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,018   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,021   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,023   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,026   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,028   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,030   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,032   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,034   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,035   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,037   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,039   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,041   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,046   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,089   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,091   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,094   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,096   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,174   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,176   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,177   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,179   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,181   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,183   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,185   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,187   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,188   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,190   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2023-09-24T23:17:26,193   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/spc216.gro -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2023-09-24T23:17:26,195   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,196   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,198   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,200   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,202   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,203   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,205   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/Makefile.am -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,207   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,209   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,211   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/Makefile.in -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,221   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,231   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,243   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,252   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,253   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,255   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,257   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,260   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,263   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,266   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,267   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,269   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,271   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,272   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff45/amber99sbmut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2023-09-24T23:17:26,275   copying build/lib.linux-armv7l-cpython-311/pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx
2023-09-24T23:17:26,278   copying build/lib.linux-armv7l-cpython-311/pmx/_version.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-24T23:17:26,281   creating build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-24T23:17:26,281   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/md_setup.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-24T23:17:26,284   creating build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2023-09-24T23:17:26,285   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands/one_ff_file.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2023-09-24T23:17:26,287   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands/make_hybrid.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2023-09-24T23:17:26,290   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands/atoms_to_morph.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2023-09-24T23:17:26,293   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands/atoms_to_morph_rdkit2018.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2023-09-24T23:17:26,297   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligands/build_mst_graph.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2023-09-24T23:17:26,299   creating build/bdist.linux-armv7l/wheel/pmx/extensions
2023-09-24T23:17:26,301   creating build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-24T23:17:26,302   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-24T23:17:26,304   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/trr2xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-24T23:17:26,306   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-24T23:17:26,308   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_c_test.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-24T23:17:26,310   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-24T23:17:26,312   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-24T23:17:26,314   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-24T23:17:26,317   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-24T23:17:26,320   creating build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-24T23:17:26,321   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/wrap_Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-24T23:17:26,323   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/pmx.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-24T23:17:26,325   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/init.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-24T23:17:26,327   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/cpp_test.cpp -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-24T23:17:26,329   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-24T23:17:26,331   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Energy.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-24T23:17:26,333   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Geometry.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-24T23:17:26,335   running install_egg_info
2023-09-24T23:17:26,365   Copying src/pmx_biobb.egg-info to build/bdist.linux-armv7l/wheel/pmx_biobb-4.0.1-py3.11.egg-info
2023-09-24T23:17:26,379   running install_scripts
2023-09-24T23:17:26,430   creating build/bdist.linux-armv7l/wheel/pmx_biobb-4.0.1.dist-info/WHEEL
2023-09-24T23:17:26,432   creating '/tmp/pip-wheel-pwv8151j/pmx_biobb-4.0.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-24T23:17:26,468   adding 'pmx/_pmx.cpython-311-arm-linux-gnueabihf.so'
2023-09-24T23:17:26,470   adding 'pmx/_version.py'
2023-09-24T23:17:26,492   adding 'pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so'
2023-09-24T23:17:28,497   adding 'pmx/data/bbdep.pkl'
2023-09-24T23:17:28,639   adding 'pmx/data/blosum62_new.mat'
2023-09-24T23:17:28,654   adding 'pmx/data/bp.pkl'
2023-09-24T23:17:28,674   adding 'pmx/data/bp_amber.pkl'
2023-09-24T23:17:28,695   adding 'pmx/data/bp_charmm.pkl'
2023-09-24T23:17:28,705   adding 'pmx/data/rna.pkl'
2023-09-24T23:17:28,707   adding 'pmx/data/mutff45/atommass.dat'
2023-09-24T23:17:28,709   adding 'pmx/data/mutff45/elements.dat'
2023-09-24T23:17:28,715   adding 'pmx/data/mutff45/spc216.gro'
2023-09-24T23:17:28,716   adding 'pmx/data/mutff45/specbond.dat'
2023-09-24T23:17:28,717   adding 'pmx/data/mutff45/xlateat.dat'
2023-09-24T23:17:28,719   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb'
2023-09-24T23:17:28,721   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.hdb'
2023-09-24T23:17:28,723   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb'
2023-09-24T23:17:28,724   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.r2b'
2023-09-24T23:17:28,725   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.vsd'
2023-09-24T23:17:28,786   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/backup_mutres'
2023-09-24T23:17:28,797   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.arn'
2023-09-24T23:17:28,798   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.hdb'
2023-09-24T23:17:28,800   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.r2b'
2023-09-24T23:17:28,802   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.rtp'
2023-09-24T23:17:28,806   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffbonded.itp'
2023-09-24T23:17:28,807   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.itp'
2023-09-24T23:17:28,809   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/gbsa.itp'
2023-09-24T23:17:28,815   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ions.itp'
2023-09-24T23:17:28,970   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.mtp'
2023-09-24T23:17:29,052   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.rtp'
2023-09-24T23:17:29,063   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.arn'
2023-09-24T23:17:29,064   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.hdb'
2023-09-24T23:17:29,065   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.r2b'
2023-09-24T23:17:29,068   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.rtp'
2023-09-24T23:17:29,069   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spc.itp'
2023-09-24T23:17:29,070   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spce.itp'
2023-09-24T23:17:29,071   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip3p.itp'
2023-09-24T23:17:29,072   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4p.itp'
2023-09-24T23:17:29,074   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4pew.itp'
2023-09-24T23:17:29,075   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip5p.itp'
2023-09-24T23:17:29,076   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/urea.itp'
2023-09-24T23:17:29,077   adding 'pmx/data/mutff45/amber99sb-star-ildn-mut.ff/watermodels.dat'
2023-09-24T23:17:29,079   adding 'pmx/data/mutff45/amber99sbmut.ff/Makefile.am'
2023-09-24T23:17:29,081   adding 'pmx/data/mutff45/amber99sbmut.ff/Makefile.in'
2023-09-24T23:17:29,083   adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.c.tdb'
2023-09-24T23:17:29,084   adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.hdb'
2023-09-24T23:17:29,085   adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.n.tdb'
2023-09-24T23:17:29,087   adding 'pmx/data/mutff45/amber99sbmut.ff/aminoacids.vsd'
2023-09-24T23:17:29,088   adding 'pmx/data/mutff45/amber99sbmut.ff/dna.arn'
2023-09-24T23:17:29,089   adding 'pmx/data/mutff45/amber99sbmut.ff/dna.hdb'
2023-09-24T23:17:29,090   adding 'pmx/data/mutff45/amber99sbmut.ff/dna.r2b'
2023-09-24T23:17:29,093   adding 'pmx/data/mutff45/amber99sbmut.ff/dna.rtp'
2023-09-24T23:17:29,094   adding 'pmx/data/mutff45/amber99sbmut.ff/gbsa.itp'
2023-09-24T23:17:29,095   adding 'pmx/data/mutff45/amber99sbmut.ff/rna.arn'
2023-09-24T23:17:29,096   adding 'pmx/data/mutff45/amber99sbmut.ff/rna.hdb'
2023-09-24T23:17:29,098   adding 'pmx/data/mutff45/amber99sbmut.ff/rna.r2b'
2023-09-24T23:17:29,100   adding 'pmx/data/mutff45/amber99sbmut.ff/rna.rtp'
2023-09-24T23:17:29,101   adding 'pmx/data/mutff45/amber99sbmut.ff/spc.itp'
2023-09-24T23:17:29,103   adding 'pmx/data/mutff45/amber99sbmut.ff/spce.itp'
2023-09-24T23:17:29,104   adding 'pmx/data/mutff45/amber99sbmut.ff/tip3p.itp'
2023-09-24T23:17:29,105   adding 'pmx/data/mutff45/amber99sbmut.ff/tip4p.itp'
2023-09-24T23:17:29,106   adding 'pmx/data/mutff45/amber99sbmut.ff/tip4pew.itp'
2023-09-24T23:17:29,108   adding 'pmx/data/mutff45/amber99sbmut.ff/tip5p.itp'
2023-09-24T23:17:29,109   adding 'pmx/data/mutff45/amber99sbmut.ff/urea.itp'
2023-09-24T23:17:29,110   adding 'pmx/data/mutff45/amber99sbmut.ff/watermodels.dat'
2023-09-24T23:17:29,112   adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.arn'
2023-09-24T23:17:29,114   adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.c.tdb'
2023-09-24T23:17:29,115   adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.n.tdb'
2023-09-24T23:17:29,116   adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.r2b'
2023-09-24T23:17:29,117   adding 'pmx/data/mutff45/charmm22starmut.ff/aminoacids.vsd'
2023-09-24T23:17:29,119   adding 'pmx/data/mutff45/charmm22starmut.ff/dna.arn'
2023-09-24T23:17:29,120   adding 'pmx/data/mutff45/charmm22starmut.ff/dna.c.tdb'
2023-09-24T23:17:29,121   adding 'pmx/data/mutff45/charmm22starmut.ff/dna.hdb'
2023-09-24T23:17:29,122   adding 'pmx/data/mutff45/charmm22starmut.ff/dna.n.tdb'
2023-09-24T23:17:29,124   adding 'pmx/data/mutff45/charmm22starmut.ff/dna.rtp'
2023-09-24T23:17:29,131   adding 'pmx/data/mutff45/charmm22starmut.ff/ffbonded.itp'
2023-09-24T23:17:29,136   adding 'pmx/data/mutff45/charmm22starmut.ff/ffnanonbonded.itp'
2023-09-24T23:17:29,138   adding 'pmx/data/mutff45/charmm22starmut.ff/forcefield.itp'
2023-09-24T23:17:29,139   adding 'pmx/data/mutff45/charmm22starmut.ff/gb.itp'
2023-09-24T23:17:29,140   adding 'pmx/data/mutff45/charmm22starmut.ff/ions.itp'
2023-09-24T23:17:29,141   adding 'pmx/data/mutff45/charmm22starmut.ff/lipids.hdb'
2023-09-24T23:17:29,145   adding 'pmx/data/mutff45/charmm22starmut.ff/lipids.rtp'
2023-09-24T23:17:29,147   adding 'pmx/data/mutff45/charmm22starmut.ff/mutres.arn'
2023-09-24T23:17:29,148   adding 'pmx/data/mutff45/charmm22starmut.ff/rna.arn'
2023-09-24T23:17:29,149   adding 'pmx/data/mutff45/charmm22starmut.ff/rna.c.tdb'
2023-09-24T23:17:29,150   adding 'pmx/data/mutff45/charmm22starmut.ff/rna.hdb'
2023-09-24T23:17:29,151   adding 'pmx/data/mutff45/charmm22starmut.ff/rna.n.tdb'
2023-09-24T23:17:29,153   adding 'pmx/data/mutff45/charmm22starmut.ff/rna.r2b'
2023-09-24T23:17:29,154   adding 'pmx/data/mutff45/charmm22starmut.ff/rna.rtp'
2023-09-24T23:17:29,156   adding 'pmx/data/mutff45/charmm22starmut.ff/spc.itp'
2023-09-24T23:17:29,157   adding 'pmx/data/mutff45/charmm22starmut.ff/spce.itp'
2023-09-24T23:17:29,158   adding 'pmx/data/mutff45/charmm22starmut.ff/tip3p.itp'
2023-09-24T23:17:29,159   adding 'pmx/data/mutff45/charmm22starmut.ff/tip4p.itp'
2023-09-24T23:17:29,161   adding 'pmx/data/mutff45/charmm22starmut.ff/tip4pew.itp'
2023-09-24T23:17:29,162   adding 'pmx/data/mutff45/charmm22starmut.ff/tip5p.itp'
2023-09-24T23:17:29,163   adding 'pmx/data/mutff45/charmm22starmut.ff/watermodels.dat'
2023-09-24T23:17:29,164   adding 'pmx/data/mutff45/charmm36mut.ff/aminoacids.arn'
2023-09-24T23:17:29,169   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn'
2023-09-24T23:17:29,170   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup'
2023-09-24T23:17:29,171   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb'
2023-09-24T23:17:29,172   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb'
2023-09-24T23:17:29,174   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb'
2023-09-24T23:17:29,175   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b'
2023-09-24T23:17:29,183   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp'
2023-09-24T23:17:29,185   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd'
2023-09-24T23:17:29,187   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp'
2023-09-24T23:17:29,191   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp'
2023-09-24T23:17:29,252   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres'
2023-09-24T23:17:29,266   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp'
2023-09-24T23:17:29,267   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.arn'
2023-09-24T23:17:29,268   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb'
2023-09-24T23:17:29,269   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b'
2023-09-24T23:17:29,272   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp'
2023-09-24T23:17:29,274   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp'
2023-09-24T23:17:29,279   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp'
2023-09-24T23:17:29,281   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp'
2023-09-24T23:17:29,282   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp'
2023-09-24T23:17:29,283   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp'
2023-09-24T23:17:29,284   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ions.itp'
2023-09-24T23:17:29,440   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp'
2023-09-24T23:17:29,522   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp'
2023-09-24T23:17:30,104   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp'
2023-09-24T23:17:30,302   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp'
2023-09-24T23:17:30,765   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp'
2023-09-24T23:17:30,839   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp'
2023-09-24T23:17:30,901   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.arn'
2023-09-24T23:17:30,903   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb'
2023-09-24T23:17:30,906   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b'
2023-09-24T23:17:30,911   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp'
2023-09-24T23:17:30,914   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spc.itp'
2023-09-24T23:17:30,916   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spce.itp'
2023-09-24T23:17:30,918   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp'
2023-09-24T23:17:30,920   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp'
2023-09-24T23:17:30,922   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp'
2023-09-24T23:17:30,924   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp'
2023-09-24T23:17:30,926   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/urea.itp'
2023-09-24T23:17:30,928   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat'
2023-09-24T23:17:30,931   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.arn'
2023-09-24T23:17:30,933   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb'
2023-09-24T23:17:30,936   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.hdb'
2023-09-24T23:17:30,937   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb'
2023-09-24T23:17:30,939   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.r2b'
2023-09-24T23:17:30,956   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.rtp'
2023-09-24T23:17:30,961   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.vsd'
2023-09-24T23:17:30,963   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/atomtypes.atp'
2023-09-24T23:17:30,970   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_ffbonded_for_ildn_test.itp'
2023-09-24T23:17:30,979   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/correct_ffbonded.itp'
2023-09-24T23:17:30,981   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.arn'
2023-09-24T23:17:30,983   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.hdb'
2023-09-24T23:17:30,985   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.r2b'
2023-09-24T23:17:30,989   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.rtp'
2023-09-24T23:17:30,993   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffberger.itp'
2023-09-24T23:17:30,996   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffnonbonded.itp'
2023-09-24T23:17:30,998   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.itp'
2023-09-24T23:17:31,000   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/gbsa.itp'
2023-09-24T23:17:31,002   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ions.itp'
2023-09-24T23:17:31,024   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.mtp'
2023-09-24T23:17:31,033   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.rtp'
2023-09-24T23:17:31,037   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer.itp'
2023-09-24T23:17:31,039   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer_posre.itp'
2023-09-24T23:17:31,041   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.arn'
2023-09-24T23:17:31,042   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.hdb'
2023-09-24T23:17:31,043   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.r2b'
2023-09-24T23:17:31,046   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.rtp'
2023-09-24T23:17:31,047   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spc.itp'
2023-09-24T23:17:31,052   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spce.itp'
2023-09-24T23:17:31,053   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip3p.itp'
2023-09-24T23:17:31,054   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4p.itp'
2023-09-24T23:17:31,056   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4pew.itp'
2023-09-24T23:17:31,057   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip5p.itp'
2023-09-24T23:17:31,058   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/urea.itp'
2023-09-24T23:17:31,059   adding 'pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/watermodels.dat'
2023-09-24T23:17:31,072   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/cmap.itp'
2023-09-24T23:17:31,074   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.itp'
2023-09-24T23:17:31,075   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/gb.itp'
2023-09-24T23:17:31,076   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/ions.itp'
2023-09-24T23:17:31,077   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.arn'
2023-09-24T23:17:31,078   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.c.tdb'
2023-09-24T23:17:31,080   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.hdb'
2023-09-24T23:17:31,081   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.n.tdb'
2023-09-24T23:17:31,082   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.r2b'
2023-09-24T23:17:31,218   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.rtp'
2023-09-24T23:17:31,229   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/merged.vsd'
2023-09-24T23:17:31,247   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.mtp'
2023-09-24T23:17:31,257   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.rtp'
2023-09-24T23:17:31,259   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/nbfix.itp'
2023-09-24T23:17:31,260   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/spc.itp'
2023-09-24T23:17:31,262   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/spce.itp'
2023-09-24T23:17:31,263   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/tip3p.itp'
2023-09-24T23:17:31,264   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/tip4p.itp'
2023-09-24T23:17:31,266   adding 'pmx/data/mutff45dna/charmm36m-mut.ff/watermodels.dat'
2023-09-24T23:17:31,268   adding 'pmx/extensions/pmx/Energy.c'
2023-09-24T23:17:31,271   adding 'pmx/extensions/pmx/Geometry.c'
2023-09-24T23:17:31,274   adding 'pmx/extensions/pmx/Geometry.h'
2023-09-24T23:17:31,276   adding 'pmx/extensions/pmx/cpp_test.cpp'
2023-09-24T23:17:31,277   adding 'pmx/extensions/pmx/init.c'
2023-09-24T23:17:31,278   adding 'pmx/extensions/pmx/pmx.h'
2023-09-24T23:17:31,281   adding 'pmx/extensions/pmx/wrap_Geometry.c'
2023-09-24T23:17:31,283   adding 'pmx/extensions/xdr/trr2xtc.c'
2023-09-24T23:17:31,290   adding 'pmx/extensions/xdr/xdrfile.c'
2023-09-24T23:17:31,293   adding 'pmx/extensions/xdr/xdrfile.h'
2023-09-24T23:17:31,296   adding 'pmx/extensions/xdr/xdrfile_c_test.c'
2023-09-24T23:17:31,298   adding 'pmx/extensions/xdr/xdrfile_trr.c'
2023-09-24T23:17:31,300   adding 'pmx/extensions/xdr/xdrfile_trr.h'
2023-09-24T23:17:31,301   adding 'pmx/extensions/xdr/xdrfile_xtc.c'
2023-09-24T23:17:31,303   adding 'pmx/extensions/xdr/xdrfile_xtc.h'
2023-09-24T23:17:31,306   adding 'pmx/scripts/md_setup.py'
2023-09-24T23:17:31,315   adding 'pmx/scripts/ligands/atoms_to_morph.py'
2023-09-24T23:17:31,325   adding 'pmx/scripts/ligands/atoms_to_morph_rdkit2018.py'
2023-09-24T23:17:31,329   adding 'pmx/scripts/ligands/build_mst_graph.py'
2023-09-24T23:17:31,334   adding 'pmx/scripts/ligands/make_hybrid.py'
2023-09-24T23:17:31,336   adding 'pmx/scripts/ligands/one_ff_file.py'
2023-09-24T23:17:31,339   adding 'pmx_biobb-4.0.1.dist-info/LICENSE'
2023-09-24T23:17:31,340   adding 'pmx_biobb-4.0.1.dist-info/METADATA'
2023-09-24T23:17:31,341   adding 'pmx_biobb-4.0.1.dist-info/WHEEL'
2023-09-24T23:17:31,342   adding 'pmx_biobb-4.0.1.dist-info/entry_points.txt'
2023-09-24T23:17:31,343   adding 'pmx_biobb-4.0.1.dist-info/top_level.txt'
2023-09-24T23:17:31,346   adding 'pmx_biobb-4.0.1.dist-info/RECORD'
2023-09-24T23:17:31,405   removing build/bdist.linux-armv7l/wheel
2023-09-24T23:17:31,619   Building wheel for pmx-biobb (setup.py): finished with status 'done'
2023-09-24T23:17:31,671   Created wheel for pmx-biobb: filename=pmx_biobb-4.0.1-cp311-cp311-linux_armv7l.whl size=4258438 sha256=b0398fae5229f8915a467bfa70ecf4855a9df4be5b25b6846c503634fd819011
2023-09-24T23:17:31,673   Stored in directory: /tmp/pip-ephem-wheel-cache-w4ikbzbg/wheels/0d/4c/e9/25360da5d9f1d9fa051c1cb2043a2a911ea2429c04941df96e
2023-09-24T23:17:31,690 Successfully built pmx-biobb
2023-09-24T23:17:31,835 Removed build tracker: '/tmp/pip-build-tracker-27xs9jgf'