2023-09-25T12:25:58,932 Created temporary directory: /tmp/pip-build-tracker-wrgghu5f
2023-09-25T12:25:58,933 Initialized build tracking at /tmp/pip-build-tracker-wrgghu5f
2023-09-25T12:25:58,934 Created build tracker: /tmp/pip-build-tracker-wrgghu5f
2023-09-25T12:25:58,934 Entered build tracker: /tmp/pip-build-tracker-wrgghu5f
2023-09-25T12:25:58,935 Created temporary directory: /tmp/pip-wheel-b54t0xnn
2023-09-25T12:25:58,938 Created temporary directory: /tmp/pip-ephem-wheel-cache-au4xzqr1
2023-09-25T12:25:58,960 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-25T12:25:58,964 2 location(s) to search for versions of pmx-biobb:
2023-09-25T12:25:58,964 * https://pypi.org/simple/pmx-biobb/
2023-09-25T12:25:58,964 * https://www.piwheels.org/simple/pmx-biobb/
2023-09-25T12:25:58,965 Fetching project page and analyzing links: https://pypi.org/simple/pmx-biobb/
2023-09-25T12:25:58,965 Getting page https://pypi.org/simple/pmx-biobb/
2023-09-25T12:25:58,967 Found index url https://pypi.org/simple/
2023-09-25T12:25:59,188 Fetched page https://pypi.org/simple/pmx-biobb/ as application/vnd.pypi.simple.v1+json
2023-09-25T12:25:59,193   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/ea/0e/652070bd7d0ca56047ee9da48bdce6ad248973b822b5fe7d931c07a93625/pmx_biobb-1.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-25T12:25:59,194   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-25T12:25:59,195   Skipping link: 1.0.0 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-25T12:25:59,195   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/5b/2f2f6e34ed256b51485f1313f89aeb9647a2df056fad635dc6c69354a142/pmx_biobb-1.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-25T12:25:59,196   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-25T12:25:59,197   Skipping link: 1.0.1 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-25T12:25:59,197   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/dc/26/88efc470b39ed04650850696ca8d4c1777e1f1788960a41b063c4f9f64cc/pmx_biobb-2.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,198   Found link https://files.pythonhosted.org/packages/32/7c/dd656cd2d785a7b9815e0ca54fb9bec35c258cdc058d9450726e65bc201c/pmx_biobb-2.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 2.0.0
2023-09-25T12:25:59,199   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/73/a2/51564515b8b81b725a8aa81b962e040e66d59ce4637be894cf02315fc403/pmx_biobb-3.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,200   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/e7/93/4fac73a6fe156e0940953662d457f0424e847a9546db1c10a7bbad5d3642/pmx_biobb-3.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,200   Found link https://files.pythonhosted.org/packages/3c/b8/7dcc8b482f02b8ff26aa1a9819fd389f9cc01087954d968e156a073ea4ac/pmx_biobb-3.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.1
2023-09-25T12:25:59,201   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/c4/2a/c00053a2535945c6900b99621be5c40437e939c64f36ea7d14e3bb5febbe/pmx_biobb-3.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,202   Found link https://files.pythonhosted.org/packages/8a/0b/e7b469ecf2b337e713cafe136f826f79709c9940a4d3a1eb00a669657af0/pmx_biobb-3.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.2
2023-09-25T12:25:59,203   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/8a/70/3744fd3fd4d13d0fcd04c50740aa9584ba6c5b7eb43e1a4dd65a7c223cf2/pmx_biobb-3.0.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,204   Found link https://files.pythonhosted.org/packages/6f/b2/61607c93aa5d3c34838e44ed7df748137d3b266a06a32b6d521a19ddedb4/pmx_biobb-3.0.3.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.3
2023-09-25T12:25:59,204   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/34/3e/e0a91c21ec82ca2108ec1f20c6f9fb0feb3e83b1d9277b2b521b43e77067/pmx_biobb-4.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,205   Found link https://files.pythonhosted.org/packages/d3/ee/61a98e8a9a4a1d5ab8ea32a2712cc1dfb3d7326a8404fcbd3347b28fab4d/pmx_biobb-4.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.0
2023-09-25T12:25:59,206   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/cf/d3/2cac189bd5b21c71cb79a57bf2f38121a2ecc930294758e3565302de7d21/pmx_biobb-4.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,207   Found link https://files.pythonhosted.org/packages/b9/64/0a7b31944dfae299db2a1da0949f82c4843cbc8ee4abb2f2b3f716d38640/pmx_biobb-4.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.1
2023-09-25T12:25:59,207   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/6d/c32f57cf60dce3b6835df798488a8e6980ca6e2865723f9e1c9551a8bff3/pmx_biobb-4.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,208   Found link https://files.pythonhosted.org/packages/1e/f1/377ebcaabe3ae496f4e58c434464cc6899d7a1a6287abea0ac19c9a84f38/pmx_biobb-4.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.2
2023-09-25T12:25:59,209   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/21/d8/92f5da41c0ccee7807122989b44711b075159e3129707c40a469a5333825/pmx_biobb-4.1.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,210   Found link https://files.pythonhosted.org/packages/de/e6/7e0419f8305191fb52c09e3f36db33fa8e37e029e6e2d0c361cb384cfefa/pmx_biobb-4.1.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.1.2
2023-09-25T12:25:59,210   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/8f/b7/67894a846ff237417e009dd532d744eff5fd675e98ccb50e27fda4c145e1/pmx_biobb-4.1.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,211   Found link https://files.pythonhosted.org/packages/ff/3a/d6a0cec96cc00189a683995a26e729c9d09e503129b35192923c46bd93ed/pmx_biobb-4.1.3.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.1.3
2023-09-25T12:25:59,212 Fetching project page and analyzing links: https://www.piwheels.org/simple/pmx-biobb/
2023-09-25T12:25:59,213 Getting page https://www.piwheels.org/simple/pmx-biobb/
2023-09-25T12:25:59,215 Found index url https://www.piwheels.org/simple/
2023-09-25T12:25:59,390 Fetched page https://www.piwheels.org/simple/pmx-biobb/ as text/html
2023-09-25T12:25:59,404   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp39-cp39-linux_armv7l.whl#sha256=53bd7ffc22fe4dae9200c2f72b9650e77d4ab7809ecb0219685e7429222e7b43 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,404   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp39-cp39-linux_armv6l.whl#sha256=53bd7ffc22fe4dae9200c2f72b9650e77d4ab7809ecb0219685e7429222e7b43 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,405   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp37-cp37m-linux_armv7l.whl#sha256=49e6d6e858b81a9cb06fd1e8dfb1a6813af3e81f6f471e1473a782a4063ca3eb (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,406   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp37-cp37m-linux_armv6l.whl#sha256=49e6d6e858b81a9cb06fd1e8dfb1a6813af3e81f6f471e1473a782a4063ca3eb (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,406   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp39-cp39-linux_armv7l.whl#sha256=5cfda4f30e6f90d0f14fdd9d401fec01a00d3b528b9cd88614bc3161a158087a (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,407   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp39-cp39-linux_armv6l.whl#sha256=5cfda4f30e6f90d0f14fdd9d401fec01a00d3b528b9cd88614bc3161a158087a (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,407   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp37-cp37m-linux_armv7l.whl#sha256=c9442c9129d171b9470330209ab7822af7bdaeaaae306c2c891597b1267bfec5 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,408   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp37-cp37m-linux_armv6l.whl#sha256=c9442c9129d171b9470330209ab7822af7bdaeaaae306c2c891597b1267bfec5 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,409   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp39-cp39-linux_armv7l.whl#sha256=47ab27371c794d3c80f75be7a95551af23c6e6a52f55acc0bf15aca71c443d0b (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,409   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp39-cp39-linux_armv6l.whl#sha256=47ab27371c794d3c80f75be7a95551af23c6e6a52f55acc0bf15aca71c443d0b (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,410   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp37-cp37m-linux_armv7l.whl#sha256=dff92724f2cf8b25319328fe3e99d42581794b289ae551733a6615c659395b84 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,410   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp37-cp37m-linux_armv6l.whl#sha256=dff92724f2cf8b25319328fe3e99d42581794b289ae551733a6615c659395b84 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,411   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp311-cp311-linux_armv7l.whl#sha256=b0398fae5229f8915a467bfa70ecf4855a9df4be5b25b6846c503634fd819011 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,411   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp311-cp311-linux_armv6l.whl#sha256=b0398fae5229f8915a467bfa70ecf4855a9df4be5b25b6846c503634fd819011 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,412   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp39-cp39-linux_armv7l.whl#sha256=bd751f2807a45f17c0e9676ccda12b6edbbebf475c170e3ec27044838f1d5b82 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,412   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp39-cp39-linux_armv6l.whl#sha256=bd751f2807a45f17c0e9676ccda12b6edbbebf475c170e3ec27044838f1d5b82 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,413   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv7l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,413   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv6l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,414   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp311-cp311-linux_armv7l.whl#sha256=bef6e7259c029c9892522e445c7f1205d39811f71f9a90bf16770566dea86f31 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,414   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp311-cp311-linux_armv6l.whl#sha256=bef6e7259c029c9892522e445c7f1205d39811f71f9a90bf16770566dea86f31 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,415   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv7l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,416   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv6l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,416   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp37-cp37m-linux_armv7l.whl#sha256=a27ba6f102f456ee697a94e3336dc27b59746723f1054ffdd4229bc85b007dd1 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,417   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp37-cp37m-linux_armv6l.whl#sha256=a27ba6f102f456ee697a94e3336dc27b59746723f1054ffdd4229bc85b007dd1 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,417   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp311-cp311-linux_armv7l.whl#sha256=7e73de5f2261d43b7ce076f78698fe893948d8d7cc9c88c7ee3def9a035a4e68 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,418   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp311-cp311-linux_armv6l.whl#sha256=7e73de5f2261d43b7ce076f78698fe893948d8d7cc9c88c7ee3def9a035a4e68 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,419   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp39-cp39-linux_armv7l.whl#sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,419   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp39-cp39-linux_armv6l.whl#sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,420   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv7l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,420   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv6l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,421   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv7l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,421   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv6l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,422   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv7l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,422   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv6l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,423   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp311-cp311-linux_armv7l.whl#sha256=c2f9b6cb2cb584c68d74d0ee760d79c627644692dc8371d1189026b09a9dc068 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,423   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp311-cp311-linux_armv6l.whl#sha256=c2f9b6cb2cb584c68d74d0ee760d79c627644692dc8371d1189026b09a9dc068 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,424   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv7l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,424   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv6l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,425   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv7l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,426   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv6l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,426   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,427   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,427   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,428   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2023-09-25T12:25:59,429   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-25T12:25:59,429   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-25T12:25:59,430   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-25T12:25:59,430   Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2023-09-25T12:25:59,431 Skipping link: not a file: https://www.piwheels.org/simple/pmx-biobb/
2023-09-25T12:25:59,432 Skipping link: not a file: https://pypi.org/simple/pmx-biobb/
2023-09-25T12:25:59,451 Given no hashes to check 1 links for project 'pmx-biobb': discarding no candidates
2023-09-25T12:25:59,469 Collecting pmx-biobb==4.1.3
2023-09-25T12:25:59,471   Created temporary directory: /tmp/pip-unpack-fftlsfm4
2023-09-25T12:25:59,694   Downloading pmx_biobb-4.1.3.tar.gz (5.4 MB)
2023-09-25T12:26:02,578   Added pmx-biobb==4.1.3 from https://files.pythonhosted.org/packages/ff/3a/d6a0cec96cc00189a683995a26e729c9d09e503129b35192923c46bd93ed/pmx_biobb-4.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-wrgghu5f'
2023-09-25T12:26:02,581   Running setup.py (path:/tmp/pip-wheel-b54t0xnn/pmx-biobb_b1aa20db5a1c45f4ab27da90c39643e9/setup.py) egg_info for package pmx-biobb
2023-09-25T12:26:02,581   Created temporary directory: /tmp/pip-pip-egg-info-dnfrpeww
2023-09-25T12:26:02,582   Preparing metadata (setup.py): started
2023-09-25T12:26:02,584   Running command python setup.py egg_info
2023-09-25T12:26:03,733   running egg_info
2023-09-25T12:26:03,734   creating /tmp/pip-pip-egg-info-dnfrpeww/pmx_biobb.egg-info
2023-09-25T12:26:03,759   writing /tmp/pip-pip-egg-info-dnfrpeww/pmx_biobb.egg-info/PKG-INFO
2023-09-25T12:26:03,762   writing dependency_links to /tmp/pip-pip-egg-info-dnfrpeww/pmx_biobb.egg-info/dependency_links.txt
2023-09-25T12:26:03,764   writing entry points to /tmp/pip-pip-egg-info-dnfrpeww/pmx_biobb.egg-info/entry_points.txt
2023-09-25T12:26:03,765   writing requirements to /tmp/pip-pip-egg-info-dnfrpeww/pmx_biobb.egg-info/requires.txt
2023-09-25T12:26:03,766   writing top-level names to /tmp/pip-pip-egg-info-dnfrpeww/pmx_biobb.egg-info/top_level.txt
2023-09-25T12:26:03,767   writing manifest file '/tmp/pip-pip-egg-info-dnfrpeww/pmx_biobb.egg-info/SOURCES.txt'
2023-09-25T12:26:03,841   reading manifest file '/tmp/pip-pip-egg-info-dnfrpeww/pmx_biobb.egg-info/SOURCES.txt'
2023-09-25T12:26:03,843   reading manifest template 'MANIFEST.in'
2023-09-25T12:26:03,865   adding license file 'LICENSE'
2023-09-25T12:26:03,876   writing manifest file '/tmp/pip-pip-egg-info-dnfrpeww/pmx_biobb.egg-info/SOURCES.txt'
2023-09-25T12:26:03,988   Preparing metadata (setup.py): finished with status 'done'
2023-09-25T12:26:03,992   Source in /tmp/pip-wheel-b54t0xnn/pmx-biobb_b1aa20db5a1c45f4ab27da90c39643e9 has version 4.1.3, which satisfies requirement pmx-biobb==4.1.3 from https://files.pythonhosted.org/packages/ff/3a/d6a0cec96cc00189a683995a26e729c9d09e503129b35192923c46bd93ed/pmx_biobb-4.1.3.tar.gz
2023-09-25T12:26:03,993   Removed pmx-biobb==4.1.3 from https://files.pythonhosted.org/packages/ff/3a/d6a0cec96cc00189a683995a26e729c9d09e503129b35192923c46bd93ed/pmx_biobb-4.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-wrgghu5f'
2023-09-25T12:26:03,999 Created temporary directory: /tmp/pip-unpack-4kythmtq
2023-09-25T12:26:04,000 Created temporary directory: /tmp/pip-unpack-j8yar6eo
2023-09-25T12:26:04,006 Building wheels for collected packages: pmx-biobb
2023-09-25T12:26:04,010   Created temporary directory: /tmp/pip-wheel-swu1mwxo
2023-09-25T12:26:04,011   Building wheel for pmx-biobb (setup.py): started
2023-09-25T12:26:04,012   Destination directory: /tmp/pip-wheel-swu1mwxo
2023-09-25T12:26:04,013   Running command python setup.py bdist_wheel
2023-09-25T12:26:05,029   running bdist_wheel
2023-09-25T12:26:05,123   running build
2023-09-25T12:26:05,123   running build_py
2023-09-25T12:26:05,126   creating build
2023-09-25T12:26:05,127   creating build/lib.linux-armv7l-cpython-311
2023-09-25T12:26:05,128   creating build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,129   copying src/pmx/__init__.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,131   copying src/pmx/atom.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,133   copying src/pmx/chain.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,136   copying src/pmx/analysis.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,139   copying src/pmx/rotamer.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,141   copying src/pmx/rosetta_analyze.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,144   copying src/pmx/rosetta.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,146   copying src/pmx/mutdb.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,149   copying src/pmx/estimators.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,151   copying src/pmx/library.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,156   copying src/pmx/summary.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,158   copying src/pmx/utils.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,160   copying src/pmx/ffparser.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,163   copying src/pmx/gmx.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,166   copying src/pmx/jobscript.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,168   copying src/pmx/atomselection.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,170   copying src/pmx/geometry.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,172   copying src/pmx/parser.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,174   copying src/pmx/model.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,177   copying src/pmx/_version.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,179   copying src/pmx/options.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,181   copying src/pmx/builder.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,183   copying src/pmx/molecule.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,186   copying src/pmx/xdrfile.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,188   copying src/pmx/alchemy.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,191   copying src/pmx/forcefield.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,195   copying src/pmx/ligand_alchemy.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,200   copying src/pmx/xtc.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,202   copying src/pmx/AbsRestraints.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,204   copying src/pmx/ndx.py -> build/lib.linux-armv7l-cpython-311/pmx
2023-09-25T12:26:05,206   running egg_info
2023-09-25T12:26:05,260   writing src/pmx_biobb.egg-info/PKG-INFO
2023-09-25T12:26:05,263   writing dependency_links to src/pmx_biobb.egg-info/dependency_links.txt
2023-09-25T12:26:05,264   writing entry points to src/pmx_biobb.egg-info/entry_points.txt
2023-09-25T12:26:05,266   writing requirements to src/pmx_biobb.egg-info/requires.txt
2023-09-25T12:26:05,267   writing top-level names to src/pmx_biobb.egg-info/top_level.txt
2023-09-25T12:26:05,295   reading manifest file 'src/pmx_biobb.egg-info/SOURCES.txt'
2023-09-25T12:26:05,303   reading manifest template 'MANIFEST.in'
2023-09-25T12:26:05,319   adding license file 'LICENSE'
2023-09-25T12:26:05,334   writing manifest file 'src/pmx_biobb.egg-info/SOURCES.txt'
2023-09-25T12:26:05,338   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.data' is absent from the `packages` configuration.
2023-09-25T12:26:05,339   !!

2023-09-25T12:26:05,340           ********************************************************************************
2023-09-25T12:26:05,340           ############################
2023-09-25T12:26:05,341           # Package would be ignored #
2023-09-25T12:26:05,341           ############################
2023-09-25T12:26:05,342           Python recognizes 'pmx.data' as an importable package[^1],
2023-09-25T12:26:05,342           but it is absent from setuptools' `packages` configuration.

2023-09-25T12:26:05,344           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-25T12:26:05,344           package, please make sure that 'pmx.data' is explicitly added
2023-09-25T12:26:05,345           to the `packages` configuration field.

2023-09-25T12:26:05,346           Alternatively, you can also rely on setuptools' discovery methods
2023-09-25T12:26:05,346           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-25T12:26:05,346           instead of `find_packages(...)`/`find:`).

2023-09-25T12:26:05,347           You can read more about "package discovery" on setuptools documentation page:

2023-09-25T12:26:05,348           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-25T12:26:05,349           If you don't want 'pmx.data' to be distributed and are
2023-09-25T12:26:05,350           already explicitly excluding 'pmx.data' via
2023-09-25T12:26:05,350           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-25T12:26:05,351           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-25T12:26:05,351           combination with a more fine grained `package-data` configuration.

2023-09-25T12:26:05,353           You can read more about "package data files" on setuptools documentation page:

2023-09-25T12:26:05,354           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-25T12:26:05,355           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-25T12:26:05,355                 even if it does not contain any `.py` files.
2023-09-25T12:26:05,356                 On the other hand, currently there is no concept of package data
2023-09-25T12:26:05,356                 directory, all directories are treated like packages.
2023-09-25T12:26:05,357           ********************************************************************************

2023-09-25T12:26:05,357   !!
2023-09-25T12:26:05,358     check.warn(importable)
2023-09-25T12:26:05,358   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.data.mutff' is absent from the `packages` configuration.
2023-09-25T12:26:05,358   !!

2023-09-25T12:26:05,359           ********************************************************************************
2023-09-25T12:26:05,360           ############################
2023-09-25T12:26:05,360           # Package would be ignored #
2023-09-25T12:26:05,360           ############################
2023-09-25T12:26:05,361           Python recognizes 'pmx.data.mutff' as an importable package[^1],
2023-09-25T12:26:05,361           but it is absent from setuptools' `packages` configuration.

2023-09-25T12:26:05,362           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-25T12:26:05,363           package, please make sure that 'pmx.data.mutff' is explicitly added
2023-09-25T12:26:05,363           to the `packages` configuration field.

2023-09-25T12:26:05,364           Alternatively, you can also rely on setuptools' discovery methods
2023-09-25T12:26:05,364           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-25T12:26:05,365           instead of `find_packages(...)`/`find:`).

2023-09-25T12:26:05,366           You can read more about "package discovery" on setuptools documentation page:

2023-09-25T12:26:05,367           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-25T12:26:05,367           If you don't want 'pmx.data.mutff' to be distributed and are
2023-09-25T12:26:05,368           already explicitly excluding 'pmx.data.mutff' via
2023-09-25T12:26:05,368           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-25T12:26:05,369           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-25T12:26:05,369           combination with a more fine grained `package-data` configuration.

2023-09-25T12:26:05,370           You can read more about "package data files" on setuptools documentation page:

2023-09-25T12:26:05,371           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-25T12:26:05,372           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-25T12:26:05,373                 even if it does not contain any `.py` files.
2023-09-25T12:26:05,373                 On the other hand, currently there is no concept of package data
2023-09-25T12:26:05,374                 directory, all directories are treated like packages.
2023-09-25T12:26:05,374           ********************************************************************************

2023-09-25T12:26:05,375   !!
2023-09-25T12:26:05,376     check.warn(importable)
2023-09-25T12:26:05,376   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.extensions.pmx' is absent from the `packages` configuration.
2023-09-25T12:26:05,377   !!

2023-09-25T12:26:05,378           ********************************************************************************
2023-09-25T12:26:05,378           ############################
2023-09-25T12:26:05,379           # Package would be ignored #
2023-09-25T12:26:05,379           ############################
2023-09-25T12:26:05,380           Python recognizes 'pmx.extensions.pmx' as an importable package[^1],
2023-09-25T12:26:05,380           but it is absent from setuptools' `packages` configuration.

2023-09-25T12:26:05,381           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-25T12:26:05,382           package, please make sure that 'pmx.extensions.pmx' is explicitly added
2023-09-25T12:26:05,382           to the `packages` configuration field.

2023-09-25T12:26:05,383           Alternatively, you can also rely on setuptools' discovery methods
2023-09-25T12:26:05,383           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-25T12:26:05,384           instead of `find_packages(...)`/`find:`).

2023-09-25T12:26:05,385           You can read more about "package discovery" on setuptools documentation page:

2023-09-25T12:26:05,386           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-25T12:26:05,389           If you don't want 'pmx.extensions.pmx' to be distributed and are
2023-09-25T12:26:05,390           already explicitly excluding 'pmx.extensions.pmx' via
2023-09-25T12:26:05,391           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-25T12:26:05,391           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-25T12:26:05,392           combination with a more fine grained `package-data` configuration.

2023-09-25T12:26:05,402           You can read more about "package data files" on setuptools documentation page:

2023-09-25T12:26:05,403           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-25T12:26:05,405           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-25T12:26:05,405                 even if it does not contain any `.py` files.
2023-09-25T12:26:05,406                 On the other hand, currently there is no concept of package data
2023-09-25T12:26:05,406                 directory, all directories are treated like packages.
2023-09-25T12:26:05,407           ********************************************************************************

2023-09-25T12:26:05,407   !!
2023-09-25T12:26:05,408     check.warn(importable)
2023-09-25T12:26:05,408   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.extensions.xdr' is absent from the `packages` configuration.
2023-09-25T12:26:05,409   !!

2023-09-25T12:26:05,410           ********************************************************************************
2023-09-25T12:26:05,411           ############################
2023-09-25T12:26:05,411           # Package would be ignored #
2023-09-25T12:26:05,412           ############################
2023-09-25T12:26:05,412           Python recognizes 'pmx.extensions.xdr' as an importable package[^1],
2023-09-25T12:26:05,413           but it is absent from setuptools' `packages` configuration.

2023-09-25T12:26:05,414           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-25T12:26:05,414           package, please make sure that 'pmx.extensions.xdr' is explicitly added
2023-09-25T12:26:05,415           to the `packages` configuration field.

2023-09-25T12:26:05,416           Alternatively, you can also rely on setuptools' discovery methods
2023-09-25T12:26:05,417           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-25T12:26:05,417           instead of `find_packages(...)`/`find:`).

2023-09-25T12:26:05,418           You can read more about "package discovery" on setuptools documentation page:

2023-09-25T12:26:05,419           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-25T12:26:05,420           If you don't want 'pmx.extensions.xdr' to be distributed and are
2023-09-25T12:26:05,421           already explicitly excluding 'pmx.extensions.xdr' via
2023-09-25T12:26:05,421           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-25T12:26:05,422           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-25T12:26:05,422           combination with a more fine grained `package-data` configuration.

2023-09-25T12:26:05,424           You can read more about "package data files" on setuptools documentation page:

2023-09-25T12:26:05,425           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-25T12:26:05,426           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-25T12:26:05,426                 even if it does not contain any `.py` files.
2023-09-25T12:26:05,427                 On the other hand, currently there is no concept of package data
2023-09-25T12:26:05,427                 directory, all directories are treated like packages.
2023-09-25T12:26:05,428           ********************************************************************************

2023-09-25T12:26:05,428   !!
2023-09-25T12:26:05,429     check.warn(importable)
2023-09-25T12:26:05,429   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.scripts' is absent from the `packages` configuration.
2023-09-25T12:26:05,430   !!

2023-09-25T12:26:05,431           ********************************************************************************
2023-09-25T12:26:05,431           ############################
2023-09-25T12:26:05,432           # Package would be ignored #
2023-09-25T12:26:05,432           ############################
2023-09-25T12:26:05,433           Python recognizes 'pmx.scripts' as an importable package[^1],
2023-09-25T12:26:05,433           but it is absent from setuptools' `packages` configuration.

2023-09-25T12:26:05,434           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-25T12:26:05,435           package, please make sure that 'pmx.scripts' is explicitly added
2023-09-25T12:26:05,435           to the `packages` configuration field.

2023-09-25T12:26:05,436           Alternatively, you can also rely on setuptools' discovery methods
2023-09-25T12:26:05,437           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-25T12:26:05,437           instead of `find_packages(...)`/`find:`).

2023-09-25T12:26:05,438           You can read more about "package discovery" on setuptools documentation page:

2023-09-25T12:26:05,439           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-25T12:26:05,441           If you don't want 'pmx.scripts' to be distributed and are
2023-09-25T12:26:05,441           already explicitly excluding 'pmx.scripts' via
2023-09-25T12:26:05,442           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-25T12:26:05,442           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-25T12:26:05,443           combination with a more fine grained `package-data` configuration.

2023-09-25T12:26:05,444           You can read more about "package data files" on setuptools documentation page:

2023-09-25T12:26:05,445           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-25T12:26:05,446           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-25T12:26:05,447                 even if it does not contain any `.py` files.
2023-09-25T12:26:05,447                 On the other hand, currently there is no concept of package data
2023-09-25T12:26:05,448                 directory, all directories are treated like packages.
2023-09-25T12:26:05,449           ********************************************************************************

2023-09-25T12:26:05,450   !!
2023-09-25T12:26:05,450     check.warn(importable)
2023-09-25T12:26:05,451   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pmx.scripts.icolos_entrypoints' is absent from the `packages` configuration.
2023-09-25T12:26:05,451   !!

2023-09-25T12:26:05,452           ********************************************************************************
2023-09-25T12:26:05,453           ############################
2023-09-25T12:26:05,454           # Package would be ignored #
2023-09-25T12:26:05,454           ############################
2023-09-25T12:26:05,454           Python recognizes 'pmx.scripts.icolos_entrypoints' as an importable package[^1],
2023-09-25T12:26:05,455           but it is absent from setuptools' `packages` configuration.

2023-09-25T12:26:05,456           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-25T12:26:05,456           package, please make sure that 'pmx.scripts.icolos_entrypoints' is explicitly added
2023-09-25T12:26:05,457           to the `packages` configuration field.

2023-09-25T12:26:05,458           Alternatively, you can also rely on setuptools' discovery methods
2023-09-25T12:26:05,458           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-25T12:26:05,459           instead of `find_packages(...)`/`find:`).

2023-09-25T12:26:05,459           You can read more about "package discovery" on setuptools documentation page:

2023-09-25T12:26:05,460           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-25T12:26:05,461           If you don't want 'pmx.scripts.icolos_entrypoints' to be distributed and are
2023-09-25T12:26:05,462           already explicitly excluding 'pmx.scripts.icolos_entrypoints' via
2023-09-25T12:26:05,462           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-25T12:26:05,462           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-25T12:26:05,463           combination with a more fine grained `package-data` configuration.

2023-09-25T12:26:05,464           You can read more about "package data files" on setuptools documentation page:

2023-09-25T12:26:05,465           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-25T12:26:05,466           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-25T12:26:05,467                 even if it does not contain any `.py` files.
2023-09-25T12:26:05,467                 On the other hand, currently there is no concept of package data
2023-09-25T12:26:05,468                 directory, all directories are treated like packages.
2023-09-25T12:26:05,468           ********************************************************************************

2023-09-25T12:26:05,469   !!
2023-09-25T12:26:05,470     check.warn(importable)
2023-09-25T12:26:05,470   creating build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-25T12:26:05,471   copying src/pmx/data/aminoacids.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-25T12:26:05,472   copying src/pmx/data/bbdep.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-25T12:26:05,653   copying src/pmx/data/blosum62_new.mat -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-25T12:26:05,655   copying src/pmx/data/bp.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-25T12:26:05,660   copying src/pmx/data/bp_amber.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-25T12:26:05,665   copying src/pmx/data/bp_charmm.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-25T12:26:05,669   copying src/pmx/data/rna.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2023-09-25T12:26:05,673   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-25T12:26:05,674   copying src/pmx/data/mutff/atommass.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-25T12:26:05,676   copying src/pmx/data/mutff/elements.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-25T12:26:05,678   copying src/pmx/data/mutff/residuetypes.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-25T12:26:05,680   copying src/pmx/data/mutff/spc216.gro -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-25T12:26:05,683   copying src/pmx/data/mutff/specbond.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-25T12:26:05,685   copying src/pmx/data/mutff/vdwradii.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-25T12:26:05,687   copying src/pmx/data/mutff/xlateat.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2023-09-25T12:26:05,688   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,689   copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.am -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,691   copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.in -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,694   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,696   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,698   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,701   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,703   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,705   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,709   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,711   copying src/pmx/data/mutff/amber14sbmut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,713   copying src/pmx/data/mutff/amber14sbmut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,716   copying src/pmx/data/mutff/amber14sbmut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,718   copying src/pmx/data/mutff/amber14sbmut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,720   copying src/pmx/data/mutff/amber14sbmut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,723   copying src/pmx/data/mutff/amber14sbmut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,727   copying src/pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,729   copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,731   copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,733   copying src/pmx/data/mutff/amber14sbmut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,735   copying src/pmx/data/mutff/amber14sbmut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,737   copying src/pmx/data/mutff/amber14sbmut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,798   copying src/pmx/data/mutff/amber14sbmut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,825   copying src/pmx/data/mutff/amber14sbmut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,828   copying src/pmx/data/mutff/amber14sbmut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,830   copying src/pmx/data/mutff/amber14sbmut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,832   copying src/pmx/data/mutff/amber14sbmut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,835   copying src/pmx/data/mutff/amber14sbmut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,837   copying src/pmx/data/mutff/amber14sbmut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,839   copying src/pmx/data/mutff/amber14sbmut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,841   copying src/pmx/data/mutff/amber14sbmut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,843   copying src/pmx/data/mutff/amber14sbmut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,845   copying src/pmx/data/mutff/amber14sbmut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,847   copying src/pmx/data/mutff/amber14sbmut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,849   copying src/pmx/data/mutff/amber14sbmut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:05,850   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,851   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,855   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,857   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,858   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,861   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,863   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,865   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,869   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,871   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,874   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,877   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,898   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,900   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,903   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,905   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,907   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,910   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,913   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,916   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,918   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,920   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,922   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,924   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,926   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:05,981   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:06,004   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:06,011   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:06,015   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:06,018   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:06,021   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:06,023   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:06,026   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:06,028   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:06,031   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:06,034   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:06,036   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:06,038   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:06,041   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:06,043   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:06,046   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:06,048   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:06,050   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,051   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,054   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,056   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,059   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,061   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,064   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,068   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,071   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,074   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,077   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,104   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,107   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,109   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,111   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,113   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,116   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,119   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,121   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,124   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,126   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,128   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,130   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,132   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,178   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,200   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,207   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,212   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,214   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,217   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,219   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,221   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,223   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,226   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,229   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,231   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,233   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,235   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,237   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,239   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,241   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:06,243   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,244   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,247   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,249   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,251   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,253   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,255   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,259   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,262   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,264   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,266   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,268   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,270   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,273   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,277   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,280   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,282   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,284   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,286   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,289   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,350   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,376   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,378   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,381   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,383   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,386   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,388   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,390   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,392   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,395   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,397   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,414   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,416   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:06,418   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,419   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,421   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,423   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,426   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,428   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,430   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,433   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,435   copying src/pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,438   copying src/pmx/data/mutff/charmm22star-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,441   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,443   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,445   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,447   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,449   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,452   copying src/pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,456   copying src/pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,460   copying src/pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,465   copying src/pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,518   copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,523   copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,525   copying src/pmx/data/mutff/charmm22star-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,527   copying src/pmx/data/mutff/charmm22star-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,529   copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,532   copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,537   copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,543   copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,595   copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,615   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,617   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,619   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,621   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,623   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,625   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,627   copying src/pmx/data/mutff/charmm22star-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,629   copying src/pmx/data/mutff/charmm22star-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,631   copying src/pmx/data/mutff/charmm22star-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,633   copying src/pmx/data/mutff/charmm22star-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,635   copying src/pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,637   copying src/pmx/data/mutff/charmm22star-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,639   copying src/pmx/data/mutff/charmm22star-mut.ff/tips3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,641   copying src/pmx/data/mutff/charmm22star-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:06,643   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,644   copying src/pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,647   copying src/pmx/data/mutff/charmm36m-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,651   copying src/pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,690   copying src/pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,729   copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,732   copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,735   copying src/pmx/data/mutff/charmm36m-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,738   copying src/pmx/data/mutff/charmm36m-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,740   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,743   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,745   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,748   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,751   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,753   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,772   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,775   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,777   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,821   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,842   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,850   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,854   copying src/pmx/data/mutff/charmm36m-mut.ff/nbfix.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,856   copying src/pmx/data/mutff/charmm36m-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,858   copying src/pmx/data/mutff/charmm36m-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,860   copying src/pmx/data/mutff/charmm36m-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,862   copying src/pmx/data/mutff/charmm36m-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,864   copying src/pmx/data/mutff/charmm36m-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:06,866   creating build/lib.linux-armv7l-cpython-311/pmx/extensions
2023-09-25T12:26:06,867   creating build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-25T12:26:06,868   copying src/pmx/extensions/pmx/Energy.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-25T12:26:06,871   copying src/pmx/extensions/pmx/Geometry.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-25T12:26:06,874   copying src/pmx/extensions/pmx/Geometry.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-25T12:26:06,877   copying src/pmx/extensions/pmx/cpp_test.cpp -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-25T12:26:06,879   copying src/pmx/extensions/pmx/init.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-25T12:26:06,881   copying src/pmx/extensions/pmx/pmx.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-25T12:26:06,883   copying src/pmx/extensions/pmx/wrap_Geometry.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2023-09-25T12:26:06,886   creating build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-25T12:26:06,887   copying src/pmx/extensions/xdr/trr2xtc.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-25T12:26:06,889   copying src/pmx/extensions/xdr/xdrfile.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-25T12:26:06,893   copying src/pmx/extensions/xdr/xdrfile.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-25T12:26:06,896   copying src/pmx/extensions/xdr/xdrfile_c_test.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-25T12:26:06,898   copying src/pmx/extensions/xdr/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-25T12:26:06,901   copying src/pmx/extensions/xdr/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-25T12:26:06,903   copying src/pmx/extensions/xdr/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-25T12:26:06,905   copying src/pmx/extensions/xdr/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2023-09-25T12:26:06,907   creating build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-25T12:26:06,908   copying src/pmx/scripts/__init__.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-25T12:26:06,910   copying src/pmx/scripts/analyze_dhdl.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-25T12:26:06,913   copying src/pmx/scripts/atomMapping.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-25T12:26:06,916   copying src/pmx/scripts/build_cyclic_top.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-25T12:26:06,918   copying src/pmx/scripts/cli.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-25T12:26:06,921   copying src/pmx/scripts/gen_abs_restraints.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-25T12:26:06,923   copying src/pmx/scripts/generate_hybrid_residue.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-25T12:26:06,927   copying src/pmx/scripts/generate_hybrid_topology.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-25T12:26:06,930   copying src/pmx/scripts/ligandHybrid.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-25T12:26:06,933   copying src/pmx/scripts/make_double_box.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-25T12:26:06,935   copying src/pmx/scripts/md_setup.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-25T12:26:06,938   copying src/pmx/scripts/mutate.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-25T12:26:06,941   copying src/pmx/scripts/parameterize_ligands.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-25T12:26:06,944   copying src/pmx/scripts/prepare_crooks_runs.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-25T12:26:06,947   copying src/pmx/scripts/set_gmxlib.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-25T12:26:06,949   copying src/pmx/scripts/setup_abfe.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2023-09-25T12:26:06,952   creating build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints
2023-09-25T12:26:06,953   copying src/pmx/scripts/icolos_entrypoints/__init__.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints
2023-09-25T12:26:06,955   copying src/pmx/scripts/icolos_entrypoints/assemble_systems.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints
2023-09-25T12:26:06,959   UPDATING build/lib.linux-armv7l-cpython-311/pmx/_version.py
2023-09-25T12:26:06,960   set build/lib.linux-armv7l-cpython-311/pmx/_version.py to '4.1.3'
2023-09-25T12:26:06,960   running build_ext
2023-09-25T12:26:07,543   building 'pmx._pmx' extension
2023-09-25T12:26:07,544   creating build/temp.linux-armv7l-cpython-311
2023-09-25T12:26:07,544   creating build/temp.linux-armv7l-cpython-311/src
2023-09-25T12:26:07,545   creating build/temp.linux-armv7l-cpython-311/src/pmx
2023-09-25T12:26:07,546   creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions
2023-09-25T12:26:07,546   creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx
2023-09-25T12:26:07,547   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/Energy.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Energy.o
2023-09-25T12:26:08,635   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/Geometry.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Geometry.o
2023-09-25T12:26:09,031   src/pmx/extensions/pmx/Geometry.c: In function ‘spread_atoms_on_grid’:
2023-09-25T12:26:09,031   src/pmx/extensions/pmx/Geometry.c:527:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable]
2023-09-25T12:26:09,032     527 |   int nx, ny, nz;
2023-09-25T12:26:09,033         |               ^~
2023-09-25T12:26:09,033   src/pmx/extensions/pmx/Geometry.c: In function ‘search_neighbors’:
2023-09-25T12:26:09,034   src/pmx/extensions/pmx/Geometry.c:586:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable]
2023-09-25T12:26:09,035     586 |   int nx, ny, nz;
2023-09-25T12:26:09,035         |               ^~
2023-09-25T12:26:10,904   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/init.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/init.o
2023-09-25T12:26:11,312   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/wrap_Geometry.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/wrap_Geometry.o
2023-09-25T12:26:12,914   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Energy.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Geometry.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/init.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/wrap_Geometry.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/pmx/_pmx.cpython-311-arm-linux-gnueabihf.so
2023-09-25T12:26:13,043   building 'pmx._xdrio' extension
2023-09-25T12:26:13,044   creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr
2023-09-25T12:26:13,045   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.11 -c src/pmx/extensions/xdr/xdrfile.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile.o
2023-09-25T12:26:13,088   src/pmx/extensions/xdr/xdrfile.c:5:2: warning: "/*" within comment [-Wcomment]
2023-09-25T12:26:13,088       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-25T12:26:13,089         |
2023-09-25T12:26:13,195   In file included from src/pmx/extensions/xdr/xdrfile.c:60:
2023-09-25T12:26:13,196   src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-25T12:26:13,196       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-25T12:26:13,197         |
2023-09-25T12:26:13,204   src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofint’:
2023-09-25T12:26:13,204   src/pmx/extensions/xdr/xdrfile.c:499:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-25T12:26:13,205     499 |     while (size >= num && num_of_bits < 32)
2023-09-25T12:26:13,205         |                 ^~
2023-09-25T12:26:13,206   src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofints’:
2023-09-25T12:26:13,206   src/pmx/extensions/xdr/xdrfile.c:545:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-25T12:26:13,207     545 |     while (bytes[num_of_bytes] >= num)
2023-09-25T12:26:13,208         |                                ^~
2023-09-25T12:26:13,208   src/pmx/extensions/xdr/xdrfile.c: In function ‘encodeints’:
2023-09-25T12:26:13,208   src/pmx/extensions/xdr/xdrfile.c:654:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-25T12:26:13,209     654 |     if (num_of_bits >= num_of_bytes * 8)
2023-09-25T12:26:13,209         |                     ^~
2023-09-25T12:26:13,210   src/pmx/extensions/xdr/xdrfile.c:656:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-25T12:26:13,211     656 |                 for (i = 0; i < num_of_bytes; i++)
2023-09-25T12:26:13,211         |                               ^
2023-09-25T12:26:13,212   src/pmx/extensions/xdr/xdrfile.c:664:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-25T12:26:13,213     664 |                 for (i = 0; i < num_of_bytes-1; i++)
2023-09-25T12:26:13,213         |                               ^
2023-09-25T12:26:13,214   src/pmx/extensions/xdr/xdrfile.c: In function ‘decodebits’:
2023-09-25T12:26:13,215   src/pmx/extensions/xdr/xdrfile.c:704:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-25T12:26:13,215     704 |                 if (lastbits < num_of_bits)
2023-09-25T12:26:13,216         |                              ^
2023-09-25T12:26:13,217   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_float’:
2023-09-25T12:26:13,218   src/pmx/extensions/xdr/xdrfile.c:814:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-25T12:26:13,218     814 |         if(size3>xfp->buf1size)
2023-09-25T12:26:13,219         |                 ^
2023-09-25T12:26:13,220   src/pmx/extensions/xdr/xdrfile.c:866:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-25T12:26:13,220     866 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-25T12:26:13,221         |                          ^
2023-09-25T12:26:13,221   src/pmx/extensions/xdr/xdrfile.c:866:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-25T12:26:13,222     866 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-25T12:26:13,223         |                                            ^~~
2023-09-25T12:26:13,223   src/pmx/extensions/xdr/xdrfile.c:792:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-09-25T12:26:13,224     792 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-09-25T12:26:13,225         |                                ^~~~~~
2023-09-25T12:26:13,225   src/pmx/extensions/xdr/xdrfile.c:789:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-09-25T12:26:13,226     789 |         int smallidx, minidx, maxidx;
2023-09-25T12:26:13,227         |                       ^~~~~~
2023-09-25T12:26:13,228   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2023-09-25T12:26:13,228   src/pmx/extensions/xdr/xdrfile.c:1010:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-25T12:26:13,229    1010 |         if(size3>xfp->buf1size)
2023-09-25T12:26:13,229         |                 ^
2023-09-25T12:26:13,232   src/pmx/extensions/xdr/xdrfile.c:1133:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-25T12:26:13,233    1133 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-09-25T12:26:13,233         |                         ^
2023-09-25T12:26:13,233   src/pmx/extensions/xdr/xdrfile.c:1139:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-25T12:26:13,234    1139 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-25T12:26:13,234         |                          ^
2023-09-25T12:26:13,235   src/pmx/extensions/xdr/xdrfile.c:1139:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-25T12:26:13,235    1139 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-25T12:26:13,236         |                                            ^~~
2023-09-25T12:26:13,239   src/pmx/extensions/xdr/xdrfile.c:1271:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-25T12:26:13,240    1271 |         if(tmp==(unsigned int)buf2[0])
2023-09-25T12:26:13,240         |               ^~
2023-09-25T12:26:13,241   src/pmx/extensions/xdr/xdrfile.c:999:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-09-25T12:26:13,241     999 |         int errval=1;
2023-09-25T12:26:13,242         |             ^~~~~~
2023-09-25T12:26:13,242   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_double’:
2023-09-25T12:26:13,243   src/pmx/extensions/xdr/xdrfile.c:1311:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-25T12:26:13,244    1311 |         if(size3>xfp->buf1size)
2023-09-25T12:26:13,244         |                 ^
2023-09-25T12:26:13,246   src/pmx/extensions/xdr/xdrfile.c:1366:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-25T12:26:13,247    1366 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-25T12:26:13,247         |                          ^
2023-09-25T12:26:13,248   src/pmx/extensions/xdr/xdrfile.c:1366:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-25T12:26:13,249    1366 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-25T12:26:13,249         |                                            ^~~
2023-09-25T12:26:13,252   src/pmx/extensions/xdr/xdrfile.c:1288:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-09-25T12:26:13,253    1288 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-09-25T12:26:13,253         |                                ^~~~~~
2023-09-25T12:26:13,254   src/pmx/extensions/xdr/xdrfile.c:1285:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-09-25T12:26:13,255    1285 |         int smallidx, minidx, maxidx;
2023-09-25T12:26:13,255         |                       ^~~~~~
2023-09-25T12:26:13,256   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2023-09-25T12:26:13,257   src/pmx/extensions/xdr/xdrfile.c:1502:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-25T12:26:13,257    1502 |         if(size3>xfp->buf1size) {
2023-09-25T12:26:13,259         |                 ^
2023-09-25T12:26:13,265   src/pmx/extensions/xdr/xdrfile.c:1617:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-25T12:26:13,265    1617 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-09-25T12:26:13,266         |                         ^
2023-09-25T12:26:13,267   src/pmx/extensions/xdr/xdrfile.c:1622:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-25T12:26:13,267    1622 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-25T12:26:13,267         |                          ^
2023-09-25T12:26:13,268   src/pmx/extensions/xdr/xdrfile.c:1622:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-25T12:26:13,269    1622 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-25T12:26:13,269         |                                            ^~~
2023-09-25T12:26:13,273   src/pmx/extensions/xdr/xdrfile.c:1732:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-25T12:26:13,274    1732 |         if(tmp==(unsigned int)buf2[0])
2023-09-25T12:26:13,274         |               ^~
2023-09-25T12:26:13,275   src/pmx/extensions/xdr/xdrfile.c:1492:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-09-25T12:26:13,276    1492 |         int errval=1;
2023-09-25T12:26:13,276         |             ^~~~~~
2023-09-25T12:26:15,824   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.11 -c src/pmx/extensions/xdr/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_trr.o
2023-09-25T12:26:15,865   src/pmx/extensions/xdr/xdrfile_trr.c:5:2: warning: "/*" within comment [-Wcomment]
2023-09-25T12:26:15,866       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-25T12:26:15,866         |
2023-09-25T12:26:15,906   In file included from src/pmx/extensions/xdr/xdrfile_trr.c:41:
2023-09-25T12:26:15,906   src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-25T12:26:15,907       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-25T12:26:15,907         |
2023-09-25T12:26:15,909   In file included from src/pmx/extensions/xdr/xdrfile_trr.c:42:
2023-09-25T12:26:15,909   src/pmx/extensions/xdr/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-25T12:26:15,910       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-25T12:26:15,911         |
2023-09-25T12:26:15,912   src/pmx/extensions/xdr/xdrfile_trr.c: In function ‘do_trnheader’:
2023-09-25T12:26:15,913   src/pmx/extensions/xdr/xdrfile_trr.c:108:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-25T12:26:15,913     108 |         if (slen != strlen(version)+1)
2023-09-25T12:26:15,914         |                  ^~
2023-09-25T12:26:15,915   src/pmx/extensions/xdr/xdrfile_trr.c:118:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-25T12:26:15,915     118 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2023-09-25T12:26:15,916         |                                              ^~
2023-09-25T12:26:16,621   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.11 -c src/pmx/extensions/xdr/xdrfile_xtc.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_xtc.o
2023-09-25T12:26:16,695   In file included from src/pmx/extensions/xdr/xdrfile_xtc.c:31:
2023-09-25T12:26:16,696   src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-25T12:26:16,696       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-25T12:26:16,697         |
2023-09-25T12:26:16,697   In file included from src/pmx/extensions/xdr/xdrfile_xtc.c:32:
2023-09-25T12:26:16,698   src/pmx/extensions/xdr/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-25T12:26:16,698       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-25T12:26:16,699         |
2023-09-25T12:26:16,700   src/pmx/extensions/xdr/xdrfile_xtc.c: In function ‘xtc_coord’:
2023-09-25T12:26:16,701   src/pmx/extensions/xdr/xdrfile_xtc.c:66:15: warning: unused variable ‘j’ [-Wunused-variable]
2023-09-25T12:26:16,701      66 |         int i,j,result;
2023-09-25T12:26:16,702         |               ^
2023-09-25T12:26:16,703   src/pmx/extensions/xdr/xdrfile_xtc.c:66:13: warning: unused variable ‘i’ [-Wunused-variable]
2023-09-25T12:26:16,703      66 |         int i,j,result;
2023-09-25T12:26:16,704         |             ^
2023-09-25T12:26:16,814   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_trr.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_xtc.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so
2023-09-25T12:26:16,947   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-25T12:26:16,948   !!

2023-09-25T12:26:16,949           ********************************************************************************
2023-09-25T12:26:16,949           Please avoid running ``setup.py`` directly.
2023-09-25T12:26:16,950           Instead, use pypa/build, pypa/installer or other
2023-09-25T12:26:16,951           standards-based tools.

2023-09-25T12:26:16,952           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-25T12:26:16,953           ********************************************************************************

2023-09-25T12:26:16,954   !!
2023-09-25T12:26:16,954     self.initialize_options()
2023-09-25T12:26:16,973   installing to build/bdist.linux-armv7l/wheel
2023-09-25T12:26:16,974   running install
2023-09-25T12:26:16,998   running install_lib
2023-09-25T12:26:17,022   creating build/bdist.linux-armv7l
2023-09-25T12:26:17,023   creating build/bdist.linux-armv7l/wheel
2023-09-25T12:26:17,025   creating build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:17,026   creating build/bdist.linux-armv7l/wheel/pmx/data
2023-09-25T12:26:17,027   copying build/lib.linux-armv7l-cpython-311/pmx/data/blosum62_new.mat -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-25T12:26:17,030   copying build/lib.linux-armv7l-cpython-311/pmx/data/bp_amber.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-25T12:26:17,034   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-25T12:26:17,035   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/specbond.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-25T12:26:17,038   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/spc216.gro -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-25T12:26:17,041   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,042   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,044   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,047   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,049   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,051   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,053   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,055   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,057   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,061   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,064   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,066   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,067   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,069   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,071   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,074   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,076   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,078   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,080   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,082   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,084   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,086   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,089   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,148   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,150   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,152   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,154   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,156   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,158   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,160   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,162   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,164   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,188   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2023-09-25T12:26:17,189   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/vdwradii.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-25T12:26:17,191   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/residuetypes.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-25T12:26:17,194   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,195   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,197   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,199   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,202   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,203   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,206   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,208   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,210   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,212   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,214   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,218   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,221   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,241   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,244   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,246   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,247   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,250   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,252   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,255   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,257   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,260   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,263   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,265   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,268   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,270   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,273   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,328   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,335   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,337   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,339   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,341   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,343   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,345   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,347   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,349   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,351   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,356   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,359   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,361   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,362   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,385   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2023-09-25T12:26:17,387   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/elements.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-25T12:26:17,390   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,391   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,393   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,395   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/nbfix.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,397   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,418   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,420   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,421   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,424   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,448   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,452   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,470   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,524   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,526   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,537   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,538   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,541   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,543   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,545   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,546   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,548   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,550   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,553   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,554   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,559   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,561   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,582   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2023-09-25T12:26:17,585   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,586   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,589   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,591   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,595   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,597   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,600   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,603   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,605   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,607   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,610   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,614   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,618   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,645   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,648   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,650   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,653   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,656   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,659   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,662   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,665   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,668   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,671   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,674   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,677   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,680   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,683   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,750   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,759   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,762   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,764   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,766   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,769   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,771   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,774   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,777   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,784   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,787   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,789   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,790   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,810   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2023-09-25T12:26:17,812   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/atommass.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-25T12:26:17,815   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,816   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,818   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,821   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,822   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,825   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,826   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,828   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,830   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,833   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,837   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,838   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,840   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,842   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,844   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,846   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,848   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,850   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,853   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,855   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/Makefile.am -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,856   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,859   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,861   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,863   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,917   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/Makefile.in -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,920   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,921   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,923   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,925   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,927   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,929   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,931   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,933   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,935   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,960   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2023-09-25T12:26:17,962   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/xlateat.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff
2023-09-25T12:26:17,965   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:17,966   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:17,968   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:17,971   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:17,974   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:17,976   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:17,978   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:17,981   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/lipids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:17,983   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:17,986   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:17,991   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:17,993   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:17,995   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:17,997   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,000   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,002   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,004   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,010   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,013   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,015   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,018   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,020   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tips3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,023   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,025   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,027   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,029   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,082   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,084   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,086   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,087   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/lipids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,090   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,094   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,095   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,097   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,099   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,101   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,104   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,105   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,107   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,109   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,128   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,129   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2023-09-25T12:26:18,133   copying build/lib.linux-armv7l-cpython-311/pmx/data/bp.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-25T12:26:18,137   copying build/lib.linux-armv7l-cpython-311/pmx/data/rna.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-25T12:26:18,141   copying build/lib.linux-armv7l-cpython-311/pmx/data/aminoacids.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-25T12:26:18,147   copying build/lib.linux-armv7l-cpython-311/pmx/data/bp_charmm.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-25T12:26:18,152   copying build/lib.linux-armv7l-cpython-311/pmx/data/bbdep.pkl -> build/bdist.linux-armv7l/wheel/pmx/data
2023-09-25T12:26:18,423   copying build/lib.linux-armv7l-cpython-311/pmx/__init__.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,425   copying build/lib.linux-armv7l-cpython-311/pmx/atom.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,428   copying build/lib.linux-armv7l-cpython-311/pmx/chain.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,431   copying build/lib.linux-armv7l-cpython-311/pmx/analysis.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,433   copying build/lib.linux-armv7l-cpython-311/pmx/rotamer.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,436   copying build/lib.linux-armv7l-cpython-311/pmx/rosetta_analyze.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,438   copying build/lib.linux-armv7l-cpython-311/pmx/rosetta.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,441   copying build/lib.linux-armv7l-cpython-311/pmx/mutdb.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,443   copying build/lib.linux-armv7l-cpython-311/pmx/estimators.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,447   creating build/bdist.linux-armv7l/wheel/pmx/extensions
2023-09-25T12:26:18,448   creating build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-25T12:26:18,450   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/trr2xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-25T12:26:18,453   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-25T12:26:18,456   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_c_test.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-25T12:26:18,459   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-25T12:26:18,461   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-25T12:26:18,465   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-25T12:26:18,467   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-25T12:26:18,470   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2023-09-25T12:26:18,472   creating build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-25T12:26:18,473   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Geometry.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-25T12:26:18,476   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/wrap_Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-25T12:26:18,479   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Energy.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-25T12:26:18,481   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-25T12:26:18,484   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/init.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-25T12:26:18,486   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/pmx.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-25T12:26:18,488   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/cpp_test.cpp -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2023-09-25T12:26:18,490   copying build/lib.linux-armv7l-cpython-311/pmx/library.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,496   copying build/lib.linux-armv7l-cpython-311/pmx/_pmx.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,502   copying build/lib.linux-armv7l-cpython-311/pmx/summary.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,505   copying build/lib.linux-armv7l-cpython-311/pmx/utils.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,508   copying build/lib.linux-armv7l-cpython-311/pmx/ffparser.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,510   copying build/lib.linux-armv7l-cpython-311/pmx/gmx.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,513   copying build/lib.linux-armv7l-cpython-311/pmx/jobscript.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,516   creating build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-25T12:26:18,517   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-25T12:26:18,519   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/parameterize_ligands.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-25T12:26:18,522   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/cli.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-25T12:26:18,524   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/mutate.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-25T12:26:18,527   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/set_gmxlib.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-25T12:26:18,529   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/atomMapping.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-25T12:26:18,532   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/analyze_dhdl.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-25T12:26:18,536   creating build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints
2023-09-25T12:26:18,537   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints
2023-09-25T12:26:18,539   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints/assemble_systems.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints
2023-09-25T12:26:18,541   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligandHybrid.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-25T12:26:18,544   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/build_cyclic_top.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-25T12:26:18,547   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/gen_abs_restraints.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-25T12:26:18,549   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/make_double_box.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-25T12:26:18,551   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/prepare_crooks_runs.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-25T12:26:18,553   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/setup_abfe.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-25T12:26:18,556   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/generate_hybrid_topology.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-25T12:26:18,559   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/md_setup.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-25T12:26:18,561   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/generate_hybrid_residue.py -> build/bdist.linux-armv7l/wheel/pmx/scripts
2023-09-25T12:26:18,565   copying build/lib.linux-armv7l-cpython-311/pmx/atomselection.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,567   copying build/lib.linux-armv7l-cpython-311/pmx/geometry.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,570   copying build/lib.linux-armv7l-cpython-311/pmx/parser.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,572   copying build/lib.linux-armv7l-cpython-311/pmx/model.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,575   copying build/lib.linux-armv7l-cpython-311/pmx/_version.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,576   copying build/lib.linux-armv7l-cpython-311/pmx/options.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,579   copying build/lib.linux-armv7l-cpython-311/pmx/builder.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,581   copying build/lib.linux-armv7l-cpython-311/pmx/molecule.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,584   copying build/lib.linux-armv7l-cpython-311/pmx/xdrfile.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,586   copying build/lib.linux-armv7l-cpython-311/pmx/alchemy.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,589   copying build/lib.linux-armv7l-cpython-311/pmx/forcefield.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,593   copying build/lib.linux-armv7l-cpython-311/pmx/ligand_alchemy.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,597   copying build/lib.linux-armv7l-cpython-311/pmx/xtc.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,599   copying build/lib.linux-armv7l-cpython-311/pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,603   copying build/lib.linux-armv7l-cpython-311/pmx/AbsRestraints.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,606   copying build/lib.linux-armv7l-cpython-311/pmx/ndx.py -> build/bdist.linux-armv7l/wheel/pmx
2023-09-25T12:26:18,608   running install_egg_info
2023-09-25T12:26:18,640   Copying src/pmx_biobb.egg-info to build/bdist.linux-armv7l/wheel/pmx_biobb-4.1.3-py3.11.egg-info
2023-09-25T12:26:18,655   running install_scripts
2023-09-25T12:26:18,706   creating build/bdist.linux-armv7l/wheel/pmx_biobb-4.1.3.dist-info/WHEEL
2023-09-25T12:26:18,709   creating '/tmp/pip-wheel-swu1mwxo/pmx_biobb-4.1.3-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-25T12:26:18,714   adding 'pmx/AbsRestraints.py'
2023-09-25T12:26:18,716   adding 'pmx/__init__.py'
2023-09-25T12:26:18,750   adding 'pmx/_pmx.cpython-311-arm-linux-gnueabihf.so'
2023-09-25T12:26:18,753   adding 'pmx/_version.py'
2023-09-25T12:26:18,775   adding 'pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so'
2023-09-25T12:26:18,783   adding 'pmx/alchemy.py'
2023-09-25T12:26:18,786   adding 'pmx/analysis.py'
2023-09-25T12:26:18,788   adding 'pmx/atom.py'
2023-09-25T12:26:18,790   adding 'pmx/atomselection.py'
2023-09-25T12:26:18,793   adding 'pmx/builder.py'
2023-09-25T12:26:18,796   adding 'pmx/chain.py'
2023-09-25T12:26:18,800   adding 'pmx/estimators.py'
2023-09-25T12:26:18,803   adding 'pmx/ffparser.py'
2023-09-25T12:26:18,812   adding 'pmx/forcefield.py'
2023-09-25T12:26:18,814   adding 'pmx/geometry.py'
2023-09-25T12:26:18,816   adding 'pmx/gmx.py'
2023-09-25T12:26:18,818   adding 'pmx/jobscript.py'
2023-09-25T12:26:18,826   adding 'pmx/library.py'
2023-09-25T12:26:18,839   adding 'pmx/ligand_alchemy.py'
2023-09-25T12:26:18,845   adding 'pmx/model.py'
2023-09-25T12:26:18,848   adding 'pmx/molecule.py'
2023-09-25T12:26:18,850   adding 'pmx/mutdb.py'
2023-09-25T12:26:18,852   adding 'pmx/ndx.py'
2023-09-25T12:26:18,854   adding 'pmx/options.py'
2023-09-25T12:26:18,856   adding 'pmx/parser.py'
2023-09-25T12:26:18,859   adding 'pmx/rosetta.py'
2023-09-25T12:26:18,861   adding 'pmx/rosetta_analyze.py'
2023-09-25T12:26:18,863   adding 'pmx/rotamer.py'
2023-09-25T12:26:18,865   adding 'pmx/summary.py'
2023-09-25T12:26:18,868   adding 'pmx/utils.py'
2023-09-25T12:26:18,870   adding 'pmx/xdrfile.py'
2023-09-25T12:26:18,871   adding 'pmx/xtc.py'
2023-09-25T12:26:18,897   adding 'pmx/data/aminoacids.pkl'
2023-09-25T12:26:20,710   adding 'pmx/data/bbdep.pkl'
2023-09-25T12:26:20,850   adding 'pmx/data/blosum62_new.mat'
2023-09-25T12:26:20,865   adding 'pmx/data/bp.pkl'
2023-09-25T12:26:20,885   adding 'pmx/data/bp_amber.pkl'
2023-09-25T12:26:20,906   adding 'pmx/data/bp_charmm.pkl'
2023-09-25T12:26:20,915   adding 'pmx/data/rna.pkl'
2023-09-25T12:26:20,918   adding 'pmx/data/mutff/atommass.dat'
2023-09-25T12:26:20,920   adding 'pmx/data/mutff/elements.dat'
2023-09-25T12:26:20,921   adding 'pmx/data/mutff/residuetypes.dat'
2023-09-25T12:26:20,928   adding 'pmx/data/mutff/spc216.gro'
2023-09-25T12:26:20,929   adding 'pmx/data/mutff/specbond.dat'
2023-09-25T12:26:20,930   adding 'pmx/data/mutff/vdwradii.dat'
2023-09-25T12:26:20,931   adding 'pmx/data/mutff/xlateat.dat'
2023-09-25T12:26:20,934   adding 'pmx/data/mutff/amber14sbmut.ff/Makefile.am'
2023-09-25T12:26:20,936   adding 'pmx/data/mutff/amber14sbmut.ff/Makefile.in'
2023-09-25T12:26:20,938   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.arn'
2023-09-25T12:26:20,939   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb'
2023-09-25T12:26:20,940   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb'
2023-09-25T12:26:20,941   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb'
2023-09-25T12:26:20,943   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b'
2023-09-25T12:26:20,949   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp'
2023-09-25T12:26:20,951   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd'
2023-09-25T12:26:20,953   adding 'pmx/data/mutff/amber14sbmut.ff/atomtypes.atp'
2023-09-25T12:26:20,954   adding 'pmx/data/mutff/amber14sbmut.ff/dna.arn'
2023-09-25T12:26:20,956   adding 'pmx/data/mutff/amber14sbmut.ff/dna.hdb'
2023-09-25T12:26:20,957   adding 'pmx/data/mutff/amber14sbmut.ff/dna.r2b'
2023-09-25T12:26:20,959   adding 'pmx/data/mutff/amber14sbmut.ff/dna.rtp'
2023-09-25T12:26:20,966   adding 'pmx/data/mutff/amber14sbmut.ff/ffbonded.itp'
2023-09-25T12:26:20,969   adding 'pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp'
2023-09-25T12:26:20,970   adding 'pmx/data/mutff/amber14sbmut.ff/forcefield.doc'
2023-09-25T12:26:20,971   adding 'pmx/data/mutff/amber14sbmut.ff/forcefield.itp'
2023-09-25T12:26:20,973   adding 'pmx/data/mutff/amber14sbmut.ff/gbsa.itp'
2023-09-25T12:26:20,974   adding 'pmx/data/mutff/amber14sbmut.ff/ions.itp'
2023-09-25T12:26:21,151   adding 'pmx/data/mutff/amber14sbmut.ff/mutres.mtp'
2023-09-25T12:26:21,240   adding 'pmx/data/mutff/amber14sbmut.ff/mutres.rtp'
2023-09-25T12:26:21,251   adding 'pmx/data/mutff/amber14sbmut.ff/rna.arn'
2023-09-25T12:26:21,253   adding 'pmx/data/mutff/amber14sbmut.ff/rna.hdb'
2023-09-25T12:26:21,254   adding 'pmx/data/mutff/amber14sbmut.ff/rna.r2b'
2023-09-25T12:26:21,256   adding 'pmx/data/mutff/amber14sbmut.ff/rna.rtp'
2023-09-25T12:26:21,257   adding 'pmx/data/mutff/amber14sbmut.ff/spc.itp'
2023-09-25T12:26:21,258   adding 'pmx/data/mutff/amber14sbmut.ff/spce.itp'
2023-09-25T12:26:21,260   adding 'pmx/data/mutff/amber14sbmut.ff/tip3p.itp'
2023-09-25T12:26:21,261   adding 'pmx/data/mutff/amber14sbmut.ff/tip4p.itp'
2023-09-25T12:26:21,262   adding 'pmx/data/mutff/amber14sbmut.ff/tip4pew.itp'
2023-09-25T12:26:21,263   adding 'pmx/data/mutff/amber14sbmut.ff/tip5p.itp'
2023-09-25T12:26:21,265   adding 'pmx/data/mutff/amber14sbmut.ff/urea.itp'
2023-09-25T12:26:21,266   adding 'pmx/data/mutff/amber14sbmut.ff/watermodels.dat'
2023-09-25T12:26:21,270   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn'
2023-09-25T12:26:21,271   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup'
2023-09-25T12:26:21,273   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb'
2023-09-25T12:26:21,274   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb'
2023-09-25T12:26:21,275   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb'
2023-09-25T12:26:21,277   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b'
2023-09-25T12:26:21,285   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp'
2023-09-25T12:26:21,287   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd'
2023-09-25T12:26:21,289   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp'
2023-09-25T12:26:21,293   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp'
2023-09-25T12:26:21,354   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres'
2023-09-25T12:26:21,368   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp'
2023-09-25T12:26:21,370   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn'
2023-09-25T12:26:21,371   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb'
2023-09-25T12:26:21,372   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b'
2023-09-25T12:26:21,375   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp'
2023-09-25T12:26:21,377   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp'
2023-09-25T12:26:21,381   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp'
2023-09-25T12:26:21,383   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp'
2023-09-25T12:26:21,385   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc'
2023-09-25T12:26:21,386   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp'
2023-09-25T12:26:21,387   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp'
2023-09-25T12:26:21,389   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp'
2023-09-25T12:26:21,547   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp'
2023-09-25T12:26:21,631   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp'
2023-09-25T12:26:21,658   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp'
2023-09-25T12:26:21,668   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp'
2023-09-25T12:26:21,671   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp'
2023-09-25T12:26:21,674   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp'
2023-09-25T12:26:21,675   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn'
2023-09-25T12:26:21,677   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb'
2023-09-25T12:26:21,678   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b'
2023-09-25T12:26:21,680   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp'
2023-09-25T12:26:21,682   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp'
2023-09-25T12:26:21,683   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp'
2023-09-25T12:26:21,684   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp'
2023-09-25T12:26:21,686   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp'
2023-09-25T12:26:21,687   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp'
2023-09-25T12:26:21,688   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp'
2023-09-25T12:26:21,689   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp'
2023-09-25T12:26:21,690   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat'
2023-09-25T12:26:21,693   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn'
2023-09-25T12:26:21,694   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb'
2023-09-25T12:26:21,695   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb'
2023-09-25T12:26:21,697   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb'
2023-09-25T12:26:21,698   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b'
2023-09-25T12:26:21,706   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp'
2023-09-25T12:26:21,709   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd'
2023-09-25T12:26:21,710   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp'
2023-09-25T12:26:21,714   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp'
2023-09-25T12:26:21,775   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres'
2023-09-25T12:26:21,789   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp'
2023-09-25T12:26:21,790   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn'
2023-09-25T12:26:21,791   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb'
2023-09-25T12:26:21,792   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b'
2023-09-25T12:26:21,795   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp'
2023-09-25T12:26:21,797   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp'
2023-09-25T12:26:21,801   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp'
2023-09-25T12:26:21,803   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp'
2023-09-25T12:26:21,804   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc'
2023-09-25T12:26:21,805   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp'
2023-09-25T12:26:21,806   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp'
2023-09-25T12:26:21,808   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp'
2023-09-25T12:26:21,962   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp'
2023-09-25T12:26:22,044   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp'
2023-09-25T12:26:22,071   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp'
2023-09-25T12:26:22,080   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp'
2023-09-25T12:26:22,084   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp'
2023-09-25T12:26:22,086   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp'
2023-09-25T12:26:22,088   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn'
2023-09-25T12:26:22,089   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb'
2023-09-25T12:26:22,090   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b'
2023-09-25T12:26:22,092   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp'
2023-09-25T12:26:22,094   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp'
2023-09-25T12:26:22,095   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp'
2023-09-25T12:26:22,096   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp'
2023-09-25T12:26:22,097   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp'
2023-09-25T12:26:22,099   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp'
2023-09-25T12:26:22,100   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp'
2023-09-25T12:26:22,102   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp'
2023-09-25T12:26:22,103   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat'
2023-09-25T12:26:22,106   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn'
2023-09-25T12:26:22,107   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb'
2023-09-25T12:26:22,108   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb'
2023-09-25T12:26:22,109   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb'
2023-09-25T12:26:22,110   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b'
2023-09-25T12:26:22,119   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp'
2023-09-25T12:26:22,121   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd'
2023-09-25T12:26:22,122   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp'
2023-09-25T12:26:22,124   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn'
2023-09-25T12:26:22,125   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb'
2023-09-25T12:26:22,126   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b'
2023-09-25T12:26:22,128   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp'
2023-09-25T12:26:22,132   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp'
2023-09-25T12:26:22,134   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp'
2023-09-25T12:26:22,136   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc'
2023-09-25T12:26:22,137   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp'
2023-09-25T12:26:22,138   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp'
2023-09-25T12:26:22,139   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp'
2023-09-25T12:26:22,324   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp'
2023-09-25T12:26:22,422   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp'
2023-09-25T12:26:22,434   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn'
2023-09-25T12:26:22,436   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb'
2023-09-25T12:26:22,437   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b'
2023-09-25T12:26:22,439   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp'
2023-09-25T12:26:22,441   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp'
2023-09-25T12:26:22,442   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp'
2023-09-25T12:26:22,443   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp'
2023-09-25T12:26:22,444   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp'
2023-09-25T12:26:22,446   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp'
2023-09-25T12:26:22,447   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp'
2023-09-25T12:26:22,448   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp'
2023-09-25T12:26:22,450   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat'
2023-09-25T12:26:22,452   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn'
2023-09-25T12:26:22,453   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb'
2023-09-25T12:26:22,455   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb'
2023-09-25T12:26:22,456   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb'
2023-09-25T12:26:22,457   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b'
2023-09-25T12:26:22,461   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp'
2023-09-25T12:26:22,463   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd'
2023-09-25T12:26:22,465   adding 'pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp'
2023-09-25T12:26:22,470   adding 'pmx/data/mutff/charmm22star-mut.ff/cmap.itp'
2023-09-25T12:26:22,471   adding 'pmx/data/mutff/charmm22star-mut.ff/dna.arn'
2023-09-25T12:26:22,472   adding 'pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb'
2023-09-25T12:26:22,474   adding 'pmx/data/mutff/charmm22star-mut.ff/dna.hdb'
2023-09-25T12:26:22,475   adding 'pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb'
2023-09-25T12:26:22,477   adding 'pmx/data/mutff/charmm22star-mut.ff/dna.rtp'
2023-09-25T12:26:22,484   adding 'pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp'
2023-09-25T12:26:22,491   adding 'pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp'
2023-09-25T12:26:22,496   adding 'pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp'
2023-09-25T12:26:22,508   adding 'pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp'
2023-09-25T12:26:22,511   adding 'pmx/data/mutff/charmm22star-mut.ff/forcefield.doc'
2023-09-25T12:26:22,512   adding 'pmx/data/mutff/charmm22star-mut.ff/forcefield.itp'
2023-09-25T12:26:22,513   adding 'pmx/data/mutff/charmm22star-mut.ff/gb.itp'
2023-09-25T12:26:22,514   adding 'pmx/data/mutff/charmm22star-mut.ff/ions.itp'
2023-09-25T12:26:22,516   adding 'pmx/data/mutff/charmm22star-mut.ff/lipids.hdb'
2023-09-25T12:26:22,520   adding 'pmx/data/mutff/charmm22star-mut.ff/lipids.rtp'
2023-09-25T12:26:22,521   adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.arn'
2023-09-25T12:26:22,673   adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.mtp'
2023-09-25T12:26:22,756   adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.rtp'
2023-09-25T12:26:22,767   adding 'pmx/data/mutff/charmm22star-mut.ff/rna.arn'
2023-09-25T12:26:22,768   adding 'pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb'
2023-09-25T12:26:22,769   adding 'pmx/data/mutff/charmm22star-mut.ff/rna.hdb'
2023-09-25T12:26:22,770   adding 'pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb'
2023-09-25T12:26:22,771   adding 'pmx/data/mutff/charmm22star-mut.ff/rna.r2b'
2023-09-25T12:26:22,773   adding 'pmx/data/mutff/charmm22star-mut.ff/rna.rtp'
2023-09-25T12:26:22,774   adding 'pmx/data/mutff/charmm22star-mut.ff/spc.itp'
2023-09-25T12:26:22,775   adding 'pmx/data/mutff/charmm22star-mut.ff/spce.itp'
2023-09-25T12:26:22,777   adding 'pmx/data/mutff/charmm22star-mut.ff/tip3p.itp'
2023-09-25T12:26:22,778   adding 'pmx/data/mutff/charmm22star-mut.ff/tip4p.itp'
2023-09-25T12:26:22,779   adding 'pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp'
2023-09-25T12:26:22,781   adding 'pmx/data/mutff/charmm22star-mut.ff/tip5p.itp'
2023-09-25T12:26:22,782   adding 'pmx/data/mutff/charmm22star-mut.ff/tips3p.itp'
2023-09-25T12:26:22,783   adding 'pmx/data/mutff/charmm22star-mut.ff/watermodels.dat'
2023-09-25T12:26:22,787   adding 'pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp'
2023-09-25T12:26:22,799   adding 'pmx/data/mutff/charmm36m-mut.ff/cmap.itp'
2023-09-25T12:26:22,882   adding 'pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp'
2023-09-25T12:26:23,010   adding 'pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp'
2023-09-25T12:26:23,025   adding 'pmx/data/mutff/charmm36m-mut.ff/forcefield.doc'
2023-09-25T12:26:23,026   adding 'pmx/data/mutff/charmm36m-mut.ff/forcefield.itp'
2023-09-25T12:26:23,027   adding 'pmx/data/mutff/charmm36m-mut.ff/gb.itp'
2023-09-25T12:26:23,029   adding 'pmx/data/mutff/charmm36m-mut.ff/ions.itp'
2023-09-25T12:26:23,030   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.arn'
2023-09-25T12:26:23,031   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb'
2023-09-25T12:26:23,033   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.hdb'
2023-09-25T12:26:23,034   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb'
2023-09-25T12:26:23,036   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.r2b'
2023-09-25T12:26:23,172   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.rtp'
2023-09-25T12:26:23,183   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.vsd'
2023-09-25T12:26:23,184   adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.arn'
2023-09-25T12:26:23,348   adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.mtp'
2023-09-25T12:26:23,436   adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.rtp'
2023-09-25T12:26:23,464   adding 'pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp'
2023-09-25T12:26:23,473   adding 'pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp'
2023-09-25T12:26:23,476   adding 'pmx/data/mutff/charmm36m-mut.ff/nbfix.itp'
2023-09-25T12:26:23,477   adding 'pmx/data/mutff/charmm36m-mut.ff/spc.itp'
2023-09-25T12:26:23,478   adding 'pmx/data/mutff/charmm36m-mut.ff/spce.itp'
2023-09-25T12:26:23,479   adding 'pmx/data/mutff/charmm36m-mut.ff/tip3p.itp'
2023-09-25T12:26:23,481   adding 'pmx/data/mutff/charmm36m-mut.ff/tip4p.itp'
2023-09-25T12:26:23,482   adding 'pmx/data/mutff/charmm36m-mut.ff/watermodels.dat'
2023-09-25T12:26:23,485   adding 'pmx/extensions/pmx/Energy.c'
2023-09-25T12:26:23,487   adding 'pmx/extensions/pmx/Geometry.c'
2023-09-25T12:26:23,490   adding 'pmx/extensions/pmx/Geometry.h'
2023-09-25T12:26:23,491   adding 'pmx/extensions/pmx/cpp_test.cpp'
2023-09-25T12:26:23,492   adding 'pmx/extensions/pmx/init.c'
2023-09-25T12:26:23,494   adding 'pmx/extensions/pmx/pmx.h'
2023-09-25T12:26:23,496   adding 'pmx/extensions/pmx/wrap_Geometry.c'
2023-09-25T12:26:23,498   adding 'pmx/extensions/xdr/trr2xtc.c'
2023-09-25T12:26:23,505   adding 'pmx/extensions/xdr/xdrfile.c'
2023-09-25T12:26:23,508   adding 'pmx/extensions/xdr/xdrfile.h'
2023-09-25T12:26:23,510   adding 'pmx/extensions/xdr/xdrfile_c_test.c'
2023-09-25T12:26:23,512   adding 'pmx/extensions/xdr/xdrfile_trr.c'
2023-09-25T12:26:23,514   adding 'pmx/extensions/xdr/xdrfile_trr.h'
2023-09-25T12:26:23,515   adding 'pmx/extensions/xdr/xdrfile_xtc.c'
2023-09-25T12:26:23,517   adding 'pmx/extensions/xdr/xdrfile_xtc.h'
2023-09-25T12:26:23,518   adding 'pmx/scripts/__init__.py'
2023-09-25T12:26:23,521   adding 'pmx/scripts/analyze_dhdl.py'
2023-09-25T12:26:23,524   adding 'pmx/scripts/atomMapping.py'
2023-09-25T12:26:23,526   adding 'pmx/scripts/build_cyclic_top.py'
2023-09-25T12:26:23,528   adding 'pmx/scripts/cli.py'
2023-09-25T12:26:23,529   adding 'pmx/scripts/gen_abs_restraints.py'
2023-09-25T12:26:23,536   adding 'pmx/scripts/generate_hybrid_residue.py'
2023-09-25T12:26:23,538   adding 'pmx/scripts/generate_hybrid_topology.py'
2023-09-25T12:26:23,540   adding 'pmx/scripts/ligandHybrid.py'
2023-09-25T12:26:23,542   adding 'pmx/scripts/make_double_box.py'
2023-09-25T12:26:23,544   adding 'pmx/scripts/md_setup.py'
2023-09-25T12:26:23,547   adding 'pmx/scripts/mutate.py'
2023-09-25T12:26:23,552   adding 'pmx/scripts/parameterize_ligands.py'
2023-09-25T12:26:23,554   adding 'pmx/scripts/prepare_crooks_runs.py'
2023-09-25T12:26:23,555   adding 'pmx/scripts/set_gmxlib.py'
2023-09-25T12:26:23,557   adding 'pmx/scripts/setup_abfe.py'
2023-09-25T12:26:23,559   adding 'pmx/scripts/icolos_entrypoints/__init__.py'
2023-09-25T12:26:23,561   adding 'pmx/scripts/icolos_entrypoints/assemble_systems.py'
2023-09-25T12:26:23,563   adding 'pmx_biobb-4.1.3.dist-info/LICENSE'
2023-09-25T12:26:23,565   adding 'pmx_biobb-4.1.3.dist-info/METADATA'
2023-09-25T12:26:23,566   adding 'pmx_biobb-4.1.3.dist-info/WHEEL'
2023-09-25T12:26:23,567   adding 'pmx_biobb-4.1.3.dist-info/entry_points.txt'
2023-09-25T12:26:23,568   adding 'pmx_biobb-4.1.3.dist-info/top_level.txt'
2023-09-25T12:26:23,573   adding 'pmx_biobb-4.1.3.dist-info/RECORD'
2023-09-25T12:26:23,642   removing build/bdist.linux-armv7l/wheel
2023-09-25T12:26:23,881   Building wheel for pmx-biobb (setup.py): finished with status 'done'
2023-09-25T12:26:23,954   Created wheel for pmx-biobb: filename=pmx_biobb-4.1.3-cp311-cp311-linux_armv7l.whl size=5930751 sha256=c8756d69d71e4ca7d72f84df02cf29e97e8b7ed8f41949404774e3ba7accb428
2023-09-25T12:26:23,955   Stored in directory: /tmp/pip-ephem-wheel-cache-au4xzqr1/wheels/80/3e/fe/e2e3e04ccfc1b9852ff12a9282f31797a7c9a0a73638110889
2023-09-25T12:26:23,975 Successfully built pmx-biobb
2023-09-25T12:26:24,150 Removed build tracker: '/tmp/pip-build-tracker-wrgghu5f'